AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031340 MtrunA17_Chr1g0189371 88.560 507 7 3 1 457 1 506 0.0 886
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031340 AT5G16260.1 62.560 414 144 6 47 456 111 517 1.20e-166 479

Find 148 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTACCATACCTTATT+TGG 0.067713 1_1:-58065807 Msa0031340:three_prime_UTR
TTCAGTTGTTTCTTCCTTTA+TGG 0.114821 1_1:+58069843 None:intergenic
TGACAGTTGGTTTGAATTAA+AGG 0.162229 1_1:-58069596 Msa0031340:CDS
CTGGTAGCGCTTTGCCTTAT+GGG 0.205690 1_1:-58069975 Msa0031340:CDS
TCTGGTAGCGCTTTGCCTTA+TGG 0.229159 1_1:-58069976 Msa0031340:CDS
TTTCAAGGCCTGGACTTATT+AGG 0.251138 1_1:+58065969 None:intergenic
ATAAGTGGGATAAGAGTCTT+AGG 0.253904 1_1:-58071264 Msa0031340:CDS
GGCTCTAGCAATCCAACTTT+TGG 0.263833 1_1:-58068466 Msa0031340:CDS
AACTTCCTCTTCTTTCAAAA+AGG 0.285902 1_1:+58069939 None:intergenic
TGTATCATTGGAAAAGAAAA+AGG 0.296817 1_1:-58065857 Msa0031340:three_prime_UTR
AAAACGATGAATTCTGAAAA+TGG 0.309280 1_1:-58072180 Msa0031340:exon
CGTAGTAATCCATGAGCTTC+GGG 0.311556 1_1:+58065934 None:intergenic
TATTAGTTCTCTTGTATCAT+TGG 0.313605 1_1:-58065869 Msa0031340:three_prime_UTR
TCATCCTCAGGGTGTTGTTT+TGG 0.326001 1_1:-58066679 Msa0031340:CDS
CTTATTAGGAACTGTGAATC+TGG 0.330266 1_1:+58065983 None:intergenic
GATGTTGGATGGTACGTTCT+TGG 0.346116 1_1:-58072033 Msa0031340:CDS
ATTGTCTTTGTCAGCTTGCT+TGG 0.355106 1_1:+58068217 None:intergenic
GTGTTATAATACTCATGATT+TGG 0.385876 1_1:+58065755 None:intergenic
AATACACATGTTTATGTCAC+TGG 0.389054 1_1:-58069571 Msa0031340:CDS
GGGGTTCTTGCAATATTTCA+AGG 0.390159 1_1:+58065954 None:intergenic
CAAGTGGAAGCTTCGGAATT+CGG 0.399608 1_1:-58071373 Msa0031340:CDS
CTTTCTGCTGAAATTTAGCC+AGG 0.400350 1_1:+58068397 None:intergenic
GGCATATAAGCGGGTTCCTC+AGG 0.404098 1_1:-58071242 Msa0031340:intron
TGTTTCTGCAACTTCCATAA+AGG 0.417508 1_1:-58069857 Msa0031340:CDS
AACTTGAAGGTGAATGAGTT+AGG 0.421155 1_1:-58066020 Msa0031340:exon
GCTAAGCGATTGGAGCAGTT+TGG 0.425973 1_1:-58066048 Msa0031340:CDS
ACGTAGTAATCCATGAGCTT+CGG 0.430518 1_1:+58065933 None:intergenic
ACTAGAAGAAGATGTTAAAG+AGG 0.441572 1_1:-58066946 Msa0031340:CDS
GTAAATTCTTCTTCACCATC+AGG 0.442135 1_1:+58071304 None:intergenic
GTTAAATTCAAGGACAGAAA+AGG 0.445666 1_1:-58066657 Msa0031340:CDS
TAATTAACCATGCCACAGTC+CGG 0.453104 1_1:-58066086 Msa0031340:CDS
ATTTGGAAAATTGCGACATT+CGG 0.457076 1_1:-58065790 Msa0031340:three_prime_UTR
ATCTTATCACCAGGCCGAAA+AGG 0.458485 1_1:+58068435 None:intergenic
AATTAAACCATCGTCTTCAC+TGG 0.462591 1_1:+58066104 None:intergenic
TGATAGGAGGAGGCCACGTC+TGG 0.466721 1_1:-58069994 Msa0031340:intron
ACTACCTTGACTGCATCTAT+AGG 0.470187 1_1:+58066906 None:intergenic
TAGCGAAGGACAACAGTTGT+TGG 0.472530 1_1:+58067346 None:intergenic
CCTCCCGCCCGTGCGTGGAT+CGG 0.473912 1_1:+58072300 None:intergenic
GTCATCTCTTCAACCCCATA+AGG 0.479721 1_1:+58069961 None:intergenic
CACAATCAACCGCAACCTAC+TGG 0.481272 1_1:-58072147 Msa0031340:intron
AAAGAGGAATGCACGAAGCT+TGG 0.484045 1_1:-58066930 Msa0031340:CDS
CAGTAGGTTGCGGTTGATTG+TGG 0.484700 1_1:+58072148 None:intergenic
TTTAATTCAAACCAACTGTC+AGG 0.485198 1_1:+58069598 None:intergenic
GGTTTATTTATCAGGTTTGG+TGG 0.486619 1_1:-58066141 Msa0031340:intron
CTCTATGTTGATAAAGAGAC+AGG 0.489825 1_1:-58068617 Msa0031340:CDS
GGTATGTGATAATCATCCTC+AGG 0.490183 1_1:-58066691 Msa0031340:CDS
AAGGCGCACCATCCAAAAGT+TGG 0.491090 1_1:+58068454 None:intergenic
CCATGGAACATTAACGCCAT+TGG 0.492816 1_1:-58065569 Msa0031340:three_prime_UTR
TGAGGCACAAGTGGAAGCTT+CGG 0.494353 1_1:-58071380 Msa0031340:CDS
GATTCCGATGTCTGTCTCCC+TGG 0.495254 1_1:-58068415 Msa0031340:CDS
TCTTGCAATATTTCAAGGCC+TGG 0.496929 1_1:+58065959 None:intergenic
GCTTCGGAATTCGGTGGTGG+TGG 0.497213 1_1:-58071364 Msa0031340:CDS
CAAGTATGGAATTATAAAAG+AGG 0.501539 1_1:-58069426 Msa0031340:intron
AATTTAATTAGTAGTCGAAT+GGG 0.502642 1_1:-58065699 Msa0031340:three_prime_UTR
TGGAAGACAAAATGCTTGGA+TGG 0.504268 1_1:-58068169 Msa0031340:CDS
AATACCAGTGTGGTAGCTGT+TGG 0.507660 1_1:-58069814 Msa0031340:CDS
GAATGCTAATCTCACATCAC+AGG 0.509001 1_1:+58065535 None:intergenic
AATTAACCATGCCACAGTCC+GGG 0.512168 1_1:-58066085 Msa0031340:CDS
CAAGGAGGCTGAGGCACAAG+TGG 0.512405 1_1:-58071389 Msa0031340:CDS
CTAATAAACCTCCTGACAGT+TGG 0.516022 1_1:-58069609 Msa0031340:CDS
TTCGGTGGTGGTGGTGCAGT+AGG 0.516044 1_1:-58071355 Msa0031340:CDS
ATACCAGTGTGGTAGCTGTT+GGG 0.517744 1_1:-58069813 Msa0031340:CDS
TGCAAGAACCCCGAAGCTCA+TGG 0.518989 1_1:-58065943 Msa0031340:three_prime_UTR
GAATTTAATTAGTAGTCGAA+TGG 0.519758 1_1:-58065700 Msa0031340:three_prime_UTR
ACGTTCCTCCCGCCCGTGCG+TGG 0.522795 1_1:+58072295 None:intergenic
GAAGAATTTACTGATGATGA+TGG 0.523794 1_1:-58071292 Msa0031340:CDS
CAAGGACAGAAAAGGTGCTC+AGG 0.526794 1_1:-58066649 Msa0031340:CDS
AAAATGGCAAAAGGAGATCA+AGG 0.529432 1_1:-58071407 Msa0031340:CDS
CAGTTTGGTGAGGAACTTGA+AGG 0.531731 1_1:-58066033 Msa0031340:CDS
GGTGAAAATGTCGCAGATGT+TGG 0.532231 1_1:-58072048 Msa0031340:CDS
ATATCAACCCTCATTTCAGC+AGG 0.537601 1_1:+58067313 None:intergenic
TCACCATCAGGCGGTGTCGA+AGG 0.539318 1_1:+58071316 None:intergenic
TCATCAATAGTAACATCCTC+AGG 0.539668 1_1:+58069544 None:intergenic
TGCACCTCAGAGAAGACATA+AGG 0.541988 1_1:+58071988 None:intergenic
GTGTGGTAGCTGTTGGGAAG+AGG 0.542110 1_1:-58069807 Msa0031340:CDS
TGTTCAGTCCTGCTGAAATG+AGG 0.543568 1_1:-58067321 Msa0031340:CDS
AGATAAACCAGAAGAAAAGA+AGG 0.544575 1_1:-58069776 Msa0031340:intron
AGAGGAAGATGCTAAGCGAT+TGG 0.545342 1_1:-58066058 Msa0031340:CDS
GGAAGACAAAATGCTTGGAT+GGG 0.546076 1_1:-58068168 Msa0031340:CDS
TAGCCGATCCACGCACGGGC+GGG 0.546321 1_1:-58072303 Msa0031340:five_prime_UTR
CTGGCTAAATTTCAGCAGAA+AGG 0.546970 1_1:-58068396 Msa0031340:intron
TATACTGTTGCATTAGATGA+TGG 0.551989 1_1:-58065655 Msa0031340:three_prime_UTR
TAGCATCTTCCTCTAGATCC+CGG 0.556991 1_1:+58066067 None:intergenic
TGGTAGCGCTTTGCCTTATG+GGG 0.557580 1_1:-58069974 Msa0031340:CDS
GAAGCTTCGGAATTCGGTGG+TGG 0.562716 1_1:-58071367 Msa0031340:CDS
AAAGGAGATCAAGGAGGCTG+AGG 0.569311 1_1:-58071398 Msa0031340:CDS
GAGTCTTAGGGCATATAAGC+GGG 0.570694 1_1:-58071251 Msa0031340:CDS
CCGATCCACGCACGGGCGGG+AGG 0.571792 1_1:-58072300 Msa0031340:five_prime_UTR
CAGTAGGAGAAGACGTTGAG+AGG 0.571940 1_1:-58071339 Msa0031340:CDS
CCAATGGCGTTAATGTTCCA+TGG 0.573495 1_1:+58065569 None:intergenic
AGGCCTTCGACACCGCCTGA+TGG 0.575661 1_1:-58071319 Msa0031340:CDS
AAGAATTTACTGATGATGAT+GGG 0.578013 1_1:-58071291 Msa0031340:CDS
AAGTTGGAAGACAAAATGCT+TGG 0.578949 1_1:-58068173 Msa0031340:CDS
ATGATGATGGGACATATAAG+TGG 0.580341 1_1:-58071279 Msa0031340:CDS
CTAGATCCCGGACTGTGGCA+TGG 0.581437 1_1:+58066079 None:intergenic
TAGAATTGATGAATGGAAGA+TGG 0.583366 1_1:-58066620 Msa0031340:intron
GCATCAGAATCAGTTACTAT+CGG 0.583746 1_1:+58069913 None:intergenic
TAGCGTGTACCAGTAGGTTG+CGG 0.584652 1_1:+58072138 None:intergenic
TCACAGTTCCTAATAAGTCC+AGG 0.585329 1_1:-58065977 Msa0031340:three_prime_UTR
TGCATTGGTTACATATCTCA+AGG 0.589361 1_1:-58068579 Msa0031340:intron
ATACACATGTTTATGTCACT+GGG 0.589425 1_1:-58069570 Msa0031340:CDS
AATTGTAGCCGATCCACGCA+CGG 0.590738 1_1:-58072308 None:intergenic
AAGCTGACAAAGACAATAGA+CGG 0.593819 1_1:-58068211 Msa0031340:CDS
GCGTGCATAGAATTGATGAA+TGG 0.595667 1_1:-58066627 Msa0031340:CDS
TATGTCTTCTCTGAGGTGCA+AGG 0.604699 1_1:-58071985 Msa0031340:intron
GAAGACAAAATGCTTGGATG+GGG 0.605978 1_1:-58068167 Msa0031340:intron
GTAGCCGATCCACGCACGGG+CGG 0.606414 1_1:-58072304 Msa0031340:five_prime_UTR
GCGATTGGAGCAGTTTGGTG+AGG 0.606680 1_1:-58066043 Msa0031340:CDS
AGGCAAAGCGCTACCAGACG+TGG 0.611672 1_1:+58069981 None:intergenic
GGAGAGAATCAACAACAACT+TGG 0.615030 1_1:-58072012 Msa0031340:CDS
ATTGTAGCCGATCCACGCAC+GGG 0.615763 1_1:-58072307 None:intergenic
GACATCGGAATCTTATCACC+AGG 0.616948 1_1:+58068426 None:intergenic
TGGATTGCTAGAGCCACTGA+TGG 0.618240 1_1:+58068474 None:intergenic
TTATGCTGAGGCTGAAGATG+TGG 0.619425 1_1:-58071440 Msa0031340:CDS
TGGACCTATAGATGCAGTCA+AGG 0.623091 1_1:-58066910 Msa0031340:intron
TTGTTATGTAGTTTATGCTG+AGG 0.623808 1_1:-58071452 Msa0031340:intron
TTCCTCTAGATCCCGGACTG+TGG 0.624191 1_1:+58066074 None:intergenic
TGCCACAGTCCGGGATCTAG+AGG 0.625882 1_1:-58066076 Msa0031340:CDS
TGGTCCTTATGTCTTCTCTG+AGG 0.627862 1_1:-58071992 Msa0031340:CDS
ATCAACATAGAGCTTAACAC+GGG 0.630935 1_1:+58068628 None:intergenic
AATTCAAACCAACTGTCAGG+AGG 0.631486 1_1:+58069601 None:intergenic
TATTCGCTACAGTGGCAGCA+AGG 0.632781 1_1:+58072225 None:intergenic
TTATGTCACTGGGTTGCCTG+AGG 0.633023 1_1:-58069560 Msa0031340:CDS
GTTCAGTCCTGCTGAAATGA+GGG 0.634321 1_1:-58067320 Msa0031340:intron
AGAGTCTTAGGGCATATAAG+CGG 0.635019 1_1:-58071252 Msa0031340:CDS
TCGTCGTCTCTAGAAACCAC+GGG 0.636897 1_1:-58072273 Msa0031340:five_prime_UTR
TGTATATCAGGAACCATCAG+TGG 0.638535 1_1:-58068487 Msa0031340:intron
ACAGGGTCAATCAACACCAA+TGG 0.642531 1_1:+58065553 None:intergenic
AAAATGTCGCAGATGTTGGA+TGG 0.645277 1_1:-58072044 Msa0031340:CDS
TAAGTGGGATAAGAGTCTTA+GGG 0.645357 1_1:-58071263 Msa0031340:CDS
TTTCTGCTGAAATTTAGCCA+GGG 0.652648 1_1:+58068398 None:intergenic
CTTCCCAACAGCTACCACAC+TGG 0.656887 1_1:+58069810 None:intergenic
CAGGACTGAACATATAGCGA+AGG 0.659719 1_1:+58067332 None:intergenic
GTATGTGATAATCATCCTCA+GGG 0.661661 1_1:-58066690 Msa0031340:CDS
GTCGTCGTCTCTAGAAACCA+CGG 0.668195 1_1:-58072274 Msa0031340:five_prime_UTR
AATGCTAATCTCACATCACA+GGG 0.669904 1_1:+58065536 None:intergenic
TGGGTTTCTATTCGCTACAG+TGG 0.670571 1_1:+58072217 None:intergenic
GTGGAAGCTTCGGAATTCGG+TGG 0.677746 1_1:-58071370 Msa0031340:CDS
TTAGCCAGGGAGACAGACAT+CGG 0.680304 1_1:+58068411 None:intergenic
AATTCTTCTTCACCATCAGG+CGG 0.682237 1_1:+58071307 None:intergenic
TATCAACATAGAGCTTAACA+CGG 0.691544 1_1:+58068627 None:intergenic
TGATGATGGGACATATAAGT+GGG 0.715635 1_1:-58071278 Msa0031340:CDS
ATGCAATGAAAGAGTGCCCG+TGG 0.722032 1_1:+58072257 None:intergenic
TTAACCAAAACAACACCCTG+AGG 0.735800 1_1:+58066675 None:intergenic
GTAGTAATCCATGAGCTTCG+GGG 0.736991 1_1:+58065935 None:intergenic
ATACATGCCAGTGAAGACGA+TGG 0.748904 1_1:-58066111 Msa0031340:CDS
ATGGCAAAAGGAGATCAAGG+AGG 0.759277 1_1:-58071404 Msa0031340:CDS
TCAACATAGAGCTTAACACG+GGG 0.786913 1_1:+58068629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAATTTATTTGCTTT+TGG - chr1_1:58066296-58066315 Msa0031340:intron 10.0%
!!! TTTAAAATTTATTTGCTTTT+GGG - chr1_1:58066297-58066316 Msa0031340:intron 10.0%
!! TAAAATTAATACTTTATGTT+TGG - chr1_1:58067039-58067058 Msa0031340:intron 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG + chr1_1:58067511-58067530 None:intergenic 10.0%
!! AAAAAAAAAAGTTCATTATA+AGG - chr1_1:58069037-58069056 Msa0031340:intron 10.0%
!! AATCTATATTAAATGAAAAA+GGG + chr1_1:58069757-58069776 None:intergenic 10.0%
!! AAATCTATATTAAATGAAAA+AGG + chr1_1:58069758-58069777 None:intergenic 10.0%
!!! TTTGTTATTATTATTTACTG+TGG - chr1_1:58066323-58066342 Msa0031340:intron 15.0%
!! TTTCAATAAAATAAAACCTA+GGG + chr1_1:58067717-58067736 None:intergenic 15.0%
!!! TGTTTTTCTATTTTTTCTTT+TGG - chr1_1:58067776-58067795 Msa0031340:intron 15.0%
!!! GTTTTTCTATTTTTTCTTTT+GGG - chr1_1:58067777-58067796 Msa0031340:intron 15.0%
!!! GTTCATCTTATTTATATAAA+TGG - chr1_1:58068078-58068097 Msa0031340:intron 15.0%
!!! AAATATAACAGATACTTTTA+AGG + chr1_1:58068503-58068522 None:intergenic 15.0%
!! GTATCTGTTATATTTAATTA+AGG - chr1_1:58068508-58068527 Msa0031340:intron 15.0%
!!! TGATAATATGCAATATATTT+TGG + chr1_1:58068600-58068619 None:intergenic 15.0%
!! AAATCCTCATAAAAAATATA+TGG + chr1_1:58068688-58068707 None:intergenic 15.0%
!!! ATATATTTTTTATGAGGATT+TGG - chr1_1:58068687-58068706 Msa0031340:intron 15.0%
!!! TATATTTTTTATGAGGATTT+GGG - chr1_1:58068688-58068707 Msa0031340:intron 15.0%
!! GATATACACAAATATATAAT+TGG + chr1_1:58069317-58069336 None:intergenic 15.0%
!! ATTATATATTTGTGTATATC+AGG - chr1_1:58069317-58069336 Msa0031340:intron 15.0%
!! ATCTATATTAAATGAAAAAG+GGG + chr1_1:58069756-58069775 None:intergenic 15.0%
!!! TTACTTTTAACAATTATAGT+AGG - chr1_1:58070714-58070733 Msa0031340:intron 15.0%
!!! TCAATTACATTAATCTTTTA+AGG + chr1_1:58070948-58070967 None:intergenic 15.0%
!! TTAATTTCAACATAAACACA+AGG + chr1_1:58065890-58065909 None:intergenic 20.0%
!!! ATAAAAGTGTATTTTCTGAT+AGG + chr1_1:58065967-58065986 None:intergenic 20.0%
!!! TATCAGAAAATACACTTTTA+TGG - chr1_1:58065966-58065985 Msa0031340:three_prime_UTR 20.0%
!! GTAAAAATTCTTTACACTAA+TGG - chr1_1:58066234-58066253 Msa0031340:intron 20.0%
!! TATTATGATTAACATGAGAT+AGG - chr1_1:58066662-58066681 Msa0031340:CDS 20.0%
!! GGTTATAAAATTGATAGAAA+AGG + chr1_1:58067611-58067630 None:intergenic 20.0%
!!! TTTTATAACCAAAACTTTGA+TGG - chr1_1:58067621-58067640 Msa0031340:intron 20.0%
!! GTTTCAATAAAATAAAACCT+AGG + chr1_1:58067718-58067737 None:intergenic 20.0%
!!! GTTTTATTTTATTGAAACCA+AGG - chr1_1:58067720-58067739 Msa0031340:intron 20.0%
!! TAATGAAATTGTTATGTGAT+AGG - chr1_1:58067806-58067825 Msa0031340:intron 20.0%
!! AAAGATGAGAAAAAATAAGT+GGG + chr1_1:58068110-58068129 None:intergenic 20.0%
!! AAAGGAATATAGGAATAAAA+AGG + chr1_1:58068418-58068437 None:intergenic 20.0%
!!! TTGATTTTACAATTCAACAA+AGG + chr1_1:58068436-58068455 None:intergenic 20.0%
!! AAAATCAAACTATAATGCTT+AGG - chr1_1:58068448-58068467 Msa0031340:CDS 20.0%
!! TATAATGCTTAGGTATATAT+CGG - chr1_1:58068458-58068477 Msa0031340:CDS 20.0%
!!! ATATTTTTTATGAGGATTTG+GGG - chr1_1:58068689-58068708 Msa0031340:intron 20.0%
!! AAAAAAAGTTCATTATAAGG+TGG - chr1_1:58069040-58069059 Msa0031340:intron 20.0%
!!! AGTGTTTTTATAATTGTACT+TGG - chr1_1:58069476-58069495 Msa0031340:intron 20.0%
!! AAAATCAACTTGAATAAAGT+TGG + chr1_1:58069687-58069706 None:intergenic 20.0%
!!! TTTATTCAAGTTGATTTTTC+AGG - chr1_1:58069689-58069708 Msa0031340:intron 20.0%
!! AGATGCAAAAATTGATATAA+AGG + chr1_1:58070022-58070041 None:intergenic 20.0%
!! AGATTCATATTTCATAAGTT+AGG - chr1_1:58070089-58070108 Msa0031340:intron 20.0%
!!! TATGTTTAGTTTAGAGTTTT+TGG - chr1_1:58070326-58070345 Msa0031340:intron 20.0%
!! ACAAAAAAAATCCTGAAAAT+AGG + chr1_1:58070999-58071018 None:intergenic 20.0%
!!! TATTTTAATAGTACCTAAAC+TGG + chr1_1:58071382-58071401 None:intergenic 20.0%
!! ATGACAAAAGTTAATATTCT+CGG + chr1_1:58071646-58071665 None:intergenic 20.0%
!! GAAAAGAAAAAGGAAATTAT+AGG - chr1_1:58071969-58071988 Msa0031340:intron 20.0%
!! AATTTAATTAGTAGTCGAAT+GGG - chr1_1:58072117-58072136 Msa0031340:intron 20.0%
!! AAAACGATGAATTCTGAAAA+TGG - chr1_1:58065636-58065655 Msa0031340:three_prime_UTR 25.0%
!! ATTTCAGAGCATTTCTTAAA+TGG - chr1_1:58065938-58065957 Msa0031340:three_prime_UTR 25.0%
! AATTGAGAAATTGAAGACAA+AGG + chr1_1:58066016-58066035 None:intergenic 25.0%
! TGTCTTCAATTTCTCAATTA+TGG - chr1_1:58066017-58066036 Msa0031340:exon 25.0%
! GTCTTCAATTTCTCAATTAT+GGG - chr1_1:58066018-58066037 Msa0031340:exon 25.0%
!! GATTTGAAATTTGTATCTTG+AGG - chr1_1:58066193-58066212 Msa0031340:intron 25.0%
! ATTATTATTTACTGTGGACT+TGG - chr1_1:58066329-58066348 Msa0031340:intron 25.0%
!! AAGAATTTACTGATGATGAT+GGG - chr1_1:58066525-58066544 Msa0031340:intron 25.0%
!!! TTAACTAAATTTTGATGCCT+AGG - chr1_1:58066693-58066712 Msa0031340:CDS 25.0%
! GCATAATAGTTAAAACTCTA+AGG + chr1_1:58066749-58066768 None:intergenic 25.0%
! ACCTGATTTATTGAATACAT+TGG - chr1_1:58066824-58066843 Msa0031340:intron 25.0%
! ACCAATGTATTCAATAAATC+AGG + chr1_1:58066828-58066847 None:intergenic 25.0%
!!! TCTTGTTTTAGATTTTGCAT+AGG - chr1_1:58066863-58066882 Msa0031340:intron 25.0%
!!! AGTTACTAGTTAGTTTGTTA+CGG + chr1_1:58067002-58067021 None:intergenic 25.0%
!!! AGATTTTTTGAGAACTAGTT+TGG + chr1_1:58067260-58067279 None:intergenic 25.0%
!!! AAGTCCGAAACAATTTTTTT+AGG - chr1_1:58067314-58067333 Msa0031340:intron 25.0%
!!! AGTCCGAAACAATTTTTTTA+GGG - chr1_1:58067315-58067334 Msa0031340:intron 25.0%
! ACACCCTAAAAAAATTGTTT+CGG + chr1_1:58067321-58067340 None:intergenic 25.0%
! ATATGGATACATTTCCTTAA+GGG + chr1_1:58067578-58067597 None:intergenic 25.0%
! TTAAGGAAATGTATCCATAT+GGG - chr1_1:58067578-58067597 Msa0031340:intron 25.0%
!! ACTATCTTCAACAATTTTTG+AGG + chr1_1:58067928-58067947 None:intergenic 25.0%
! TAAATAAGATGAACAGATAG+CGG + chr1_1:58068072-58068091 None:intergenic 25.0%
! AAGATGAGAAAAAATAAGTG+GGG + chr1_1:58068109-58068128 None:intergenic 25.0%
! CAAAGATGAGAAAAAATAAG+TGG + chr1_1:58068111-58068130 None:intergenic 25.0%
! CAATGAATATAAGTAGTTTC+AGG + chr1_1:58068326-58068345 None:intergenic 25.0%
! CTGAAACTACTTATATTCAT+TGG - chr1_1:58068324-58068343 Msa0031340:intron 25.0%
! ATTCATTGGAAAAACTAACA+TGG - chr1_1:58068338-58068357 Msa0031340:intron 25.0%
! TTCATTGGAAAAACTAACAT+GGG - chr1_1:58068339-58068358 Msa0031340:intron 25.0%
!! CTCTTTTATAATTCCATACT+TGG + chr1_1:58068392-58068411 None:intergenic 25.0%
! CAAGTATGGAATTATAAAAG+AGG - chr1_1:58068390-58068409 Msa0031340:intron 25.0%
! ACAATTCAACAAAGGAATAT+AGG + chr1_1:58068428-58068447 None:intergenic 25.0%
!!! TATATCGGTTTTTCATGTTT+AGG - chr1_1:58068473-58068492 Msa0031340:CDS 25.0%
! TTAATTAAGGAAAACACAGT+CGG - chr1_1:58068521-58068540 Msa0031340:intron 25.0%
! AAAGTATATTGCCAAAAGTA+TGG - chr1_1:58068550-58068569 Msa0031340:intron 25.0%
!!! ATCACATGAAAGCATTTAAA+AGG + chr1_1:58068630-58068649 None:intergenic 25.0%
!!! ATGGCCATATATTTTTTATG+AGG - chr1_1:58068681-58068700 Msa0031340:intron 25.0%
! TATAATACACCAAAAATGGT+GGG + chr1_1:58068886-58068905 None:intergenic 25.0%
! GAAAAAGAAAACGAAAAAGT+TGG - chr1_1:58069627-58069646 Msa0031340:intron 25.0%
! GCTAAAATTAAGATGAATTG+GGG + chr1_1:58069727-58069746 None:intergenic 25.0%
! GGCTAAAATTAAGATGAATT+GGG + chr1_1:58069728-58069747 None:intergenic 25.0%
! AGGCTAAAATTAAGATGAAT+TGG + chr1_1:58069729-58069748 None:intergenic 25.0%
! TTAAATGAAAAAGGGGAATT+AGG + chr1_1:58069749-58069768 None:intergenic 25.0%
! TTGGAAAAATATCTACAAGA+AGG + chr1_1:58069782-58069801 None:intergenic 25.0%
!! TATTTTTCCAATTTACCAGA+TGG - chr1_1:58069791-58069810 Msa0031340:CDS 25.0%
! ACATTTCCATAAATACTGAT+AGG - chr1_1:58069933-58069952 Msa0031340:CDS 25.0%
!! TCTTTTCCTATCAGTATTTA+TGG + chr1_1:58069942-58069961 None:intergenic 25.0%
! ACTTATGAAAAAGATAGATG+AGG + chr1_1:58070063-58070082 None:intergenic 25.0%
! AACTAAACATAAATCTGAGA+TGG + chr1_1:58070317-58070336 None:intergenic 25.0%
!!! TTTAGAGTTTTTGGATGATT+TGG - chr1_1:58070335-58070354 Msa0031340:intron 25.0%
!! CTAATGTGATTTTCATTGTA+TGG - chr1_1:58070413-58070432 Msa0031340:intron 25.0%
! TATAACCAAATCCAAAATGA+TGG + chr1_1:58070600-58070619 None:intergenic 25.0%
! TAATATTGCTTAATCTGTTC+AGG - chr1_1:58070825-58070844 Msa0031340:intron 25.0%
! AAAATCCTGAAAATAGGATA+TGG + chr1_1:58070993-58071012 None:intergenic 25.0%
!!! TGTTGTTTTGGTTAAATTCA+AGG - chr1_1:58071149-58071168 Msa0031340:intron 25.0%
! ATAATGACTAAAACAAGATC+TGG + chr1_1:58071355-58071374 None:intergenic 25.0%
!!! AATAGTAACGTAACTTGTTT+TGG - chr1_1:58071398-58071417 Msa0031340:CDS 25.0%
! TGACAAAAGTTAATATTCTC+GGG + chr1_1:58071645-58071664 None:intergenic 25.0%
!!! AACTTTTGTCATACTTTTTC+TGG - chr1_1:58071654-58071673 Msa0031340:intron 25.0%
!!! CTTTTTCTGGTTTATTTATC+AGG - chr1_1:58071667-58071686 Msa0031340:intron 25.0%
!! TATTAGTTCTCTTGTATCAT+TGG - chr1_1:58071947-58071966 Msa0031340:intron 25.0%
! TGTATCATTGGAAAAGAAAA+AGG - chr1_1:58071959-58071978 Msa0031340:intron 25.0%
! AAGAAAAAGGAAATTATAGG+AGG - chr1_1:58071972-58071991 Msa0031340:intron 25.0%
! GTGTTATAATACTCATGATT+TGG + chr1_1:58072064-58072083 None:intergenic 25.0%
! GAATTTAATTAGTAGTCGAA+TGG - chr1_1:58072116-58072135 Msa0031340:intron 25.0%
! TTCAGAATTCATCGTTTTCT+TGG + chr1_1:58065634-58065653 None:intergenic 30.0%
AGTTAAAACAGAAATTGCTG+CGG + chr1_1:58065734-58065753 None:intergenic 30.0%
!! CTCTGAAATGTAAATTAGCA+AGG + chr1_1:58065927-58065946 None:intergenic 30.0%
! AATACACTTTTATGGTCTGA+AGG - chr1_1:58065974-58065993 Msa0031340:three_prime_UTR 30.0%
TTGTATCTTGAGGTTATGAT+TGG - chr1_1:58066203-58066222 Msa0031340:intron 30.0%
TTGTTATGTAGTTTATGCTG+AGG - chr1_1:58066364-58066383 Msa0031340:intron 30.0%
! GAAGAATTTACTGATGATGA+TGG - chr1_1:58066524-58066543 Msa0031340:intron 30.0%
!! AAATTTTGATGCCTAGGATT+TGG - chr1_1:58066699-58066718 Msa0031340:intron 30.0%
!! AATTTTGATGCCTAGGATTT+GGG - chr1_1:58066700-58066719 Msa0031340:intron 30.0%
!!! TACATTGGTTTTGAAATGAC+AGG - chr1_1:58066839-58066858 Msa0031340:intron 30.0%
!!! AGGGAAATTTTTAGCAATAG+GGG + chr1_1:58066975-58066994 None:intergenic 30.0%
!!! GAGGGAAATTTTTAGCAATA+GGG + chr1_1:58066976-58066995 None:intergenic 30.0%
CAAAAAGACACTGCTATAAA+GGG - chr1_1:58067284-58067303 Msa0031340:intron 30.0%
!!! CAATTTTTTTAGGGTGTGTT+TGG - chr1_1:58067324-58067343 Msa0031340:CDS 30.0%
CATATGGATACATTTCCTTA+AGG + chr1_1:58067579-58067598 None:intergenic 30.0%
CTTAAGGAAATGTATCCATA+TGG - chr1_1:58067577-58067596 Msa0031340:intron 30.0%
GAAAAGGAAATATTCCCATA+TGG + chr1_1:58067595-58067614 None:intergenic 30.0%
! TGCTTTATCCATCAAAGTTT+TGG + chr1_1:58067632-58067651 None:intergenic 30.0%
GTATTAATCTCAATTTCCCT+AGG - chr1_1:58067698-58067717 Msa0031340:intron 30.0%
TGAAATTGTTATGTGATAGG+AGG - chr1_1:58067809-58067828 Msa0031340:intron 30.0%
AACTTCCTCTTCTTTCAAAA+AGG + chr1_1:58067880-58067899 None:intergenic 30.0%
!! TTCAGTTGTTTCTTCCTTTA+TGG + chr1_1:58067976-58067995 None:intergenic 30.0%
AGATAAACCAGAAGAAAAGA+AGG - chr1_1:58068040-58068059 Msa0031340:intron 30.0%
! TTAGAAATGAGTACCTCTTT+TGG - chr1_1:58068141-58068160 Msa0031340:intron 30.0%
! TAGAAATGAGTACCTCTTTT+GGG - chr1_1:58068142-58068161 Msa0031340:intron 30.0%
! TGTCATTTATTTCCCAAAAG+AGG + chr1_1:58068157-58068176 None:intergenic 30.0%
TTTAATTCAAACCAACTGTC+AGG + chr1_1:58068221-58068240 None:intergenic 30.0%
!! TGACAGTTGGTTTGAATTAA+AGG - chr1_1:58068220-58068239 Msa0031340:CDS 30.0%
AATACACATGTTTATGTCAC+TGG - chr1_1:58068245-58068264 Msa0031340:intron 30.0%
ATACACATGTTTATGTCACT+GGG - chr1_1:58068246-58068265 Msa0031340:intron 30.0%
! GACATGTTAATCCATACTTT+TGG + chr1_1:58068564-58068583 None:intergenic 30.0%
!!! GTGTTATTTATTTTCGGTCA+AGG + chr1_1:58068753-58068772 None:intergenic 30.0%
GACCGAAAATAAATAACACA+AGG - chr1_1:58068754-58068773 Msa0031340:intron 30.0%
!!! GGCCTTGTGTTATTTATTTT+CGG + chr1_1:58068759-58068778 None:intergenic 30.0%
TGTCTTGCCAAAGATTAAAA+GGG - chr1_1:58068812-58068831 Msa0031340:intron 30.0%
GTATAATACACCAAAAATGG+TGG + chr1_1:58068887-58068906 None:intergenic 30.0%
TGCGTATAATACACCAAAAA+TGG + chr1_1:58068890-58068909 None:intergenic 30.0%
TATCAACATAGAGCTTAACA+CGG + chr1_1:58069192-58069211 None:intergenic 30.0%
TAAAGAGACAGGAAGAAAAA+AGG - chr1_1:58069210-58069229 Msa0031340:intron 30.0%
AAAGAGACAGGAAGAAAAAA+GGG - chr1_1:58069211-58069230 Msa0031340:intron 30.0%
TATTTAAAGAAAGCTCCATC+AGG + chr1_1:58069559-58069578 None:intergenic 30.0%
ATTTACACCATCTGGTAAAT+TGG + chr1_1:58069801-58069820 None:intergenic 30.0%
AATTTACCAGATGGTGTAAA+TGG - chr1_1:58069800-58069819 Msa0031340:CDS 30.0%
ATGGAAATGTTTATCGAAAC+TGG + chr1_1:58069923-58069942 None:intergenic 30.0%
!! TTGAATTAGCTTTGAGCTTA+TGG + chr1_1:58070145-58070164 None:intergenic 30.0%
GCTCAAAGCTAATTCAAATT+TGG - chr1_1:58070148-58070167 Msa0031340:intron 30.0%
ACTAGAAGAAGATGTTAAAG+AGG - chr1_1:58070870-58070889 Msa0031340:intron 30.0%
TGAAAATAGGATATGGTTAC+AGG + chr1_1:58070986-58071005 None:intergenic 30.0%
! TGTAACCATATCCTATTTTC+AGG - chr1_1:58070985-58071004 Msa0031340:intron 30.0%
GAAAGTAGTATCACTGTTAT+TGG + chr1_1:58071036-58071055 None:intergenic 30.0%
GTTAAATTCAAGGACAGAAA+AGG - chr1_1:58071159-58071178 Msa0031340:intron 30.0%
TAGAATTGATGAATGGAAGA+TGG - chr1_1:58071196-58071215 Msa0031340:intron 30.0%
AAGAAGAAAACGGATAAACA+AGG + chr1_1:58071231-58071250 None:intergenic 30.0%
AGTCATTATTCAACCAGTTT+AGG - chr1_1:58071366-58071385 Msa0031340:CDS 30.0%
!!! AAAACCTTTGAGCTTTTTCA+AGG - chr1_1:58071427-58071446 Msa0031340:CDS 30.0%
!!! AAACCTTTGAGCTTTTTCAA+GGG - chr1_1:58071428-58071447 Msa0031340:CDS 30.0%
! GAAACAAACATTTTTCCTTG+CGG - chr1_1:58071484-58071503 Msa0031340:intron 30.0%
! AAACAAACATTTTTCCTTGC+GGG - chr1_1:58071485-58071504 Msa0031340:intron 30.0%
TCGGGATATGTAAAAATGAA+AGG + chr1_1:58071627-58071646 None:intergenic 30.0%
! TCTGGTTTATTTATCAGGTT+TGG - chr1_1:58071672-58071691 Msa0031340:intron 30.0%
TTTGACTACCATACCTTATT+TGG - chr1_1:58072009-58072028 Msa0031340:CDS 30.0%
! GCAATTTTCCAAATAAGGTA+TGG + chr1_1:58072020-58072039 None:intergenic 30.0%
! ATGTCGCAATTTTCCAAATA+AGG + chr1_1:58072025-58072044 None:intergenic 30.0%
ATTTGGAAAATTGCGACATT+CGG - chr1_1:58072026-58072045 Msa0031340:CDS 30.0%
TATACTGTTGCATTAGATGA+TGG - chr1_1:58072161-58072180 Msa0031340:CDS 30.0%
! GTTTTCTTGGAGCAATTTCT+GGG + chr1_1:58065621-58065640 None:intergenic 35.0%
!! CATAAACACAAGGCTTTGTT+TGG + chr1_1:58065880-58065899 None:intergenic 35.0%
! TGTTTTACACTGTCAGCATA+TGG - chr1_1:58066127-58066146 Msa0031340:CDS 35.0%
AATTTCAAATCACCTCGTGA+CGG + chr1_1:58066184-58066203 None:intergenic 35.0%
ATCTTGAGGTTATGATTGGT+TGG - chr1_1:58066207-58066226 Msa0031340:intron 35.0%
ATGTGGACGAGTTTGAAAAA+TGG - chr1_1:58066393-58066412 Msa0031340:intron 35.0%
CGAGTTTGAAAAATGGCAAA+AGG - chr1_1:58066400-58066419 Msa0031340:intron 35.0%
AAAATGGCAAAAGGAGATCA+AGG - chr1_1:58066409-58066428 Msa0031340:intron 35.0%
GTAAATTCTTCTTCACCATC+AGG + chr1_1:58066515-58066534 None:intergenic 35.0%
!! ATGATGATGGGACATATAAG+TGG - chr1_1:58066537-58066556 Msa0031340:intron 35.0%
!! TGATGATGGGACATATAAGT+GGG - chr1_1:58066538-58066557 Msa0031340:intron 35.0%
ATAAGTGGGATAAGAGTCTT+AGG - chr1_1:58066552-58066571 Msa0031340:intron 35.0%
TAAGTGGGATAAGAGTCTTA+GGG - chr1_1:58066553-58066572 Msa0031340:intron 35.0%
!! ATTTTGATGCCTAGGATTTG+GGG - chr1_1:58066701-58066720 Msa0031340:intron 35.0%
TATTATGCTCGAAGCTTATG+TGG - chr1_1:58066761-58066780 Msa0031340:intron 35.0%
! AGATTTTGCATAGGTCACAT+AGG - chr1_1:58066872-58066891 Msa0031340:intron 35.0%
! ACATTGAAGGTGTATTAACG+TGG - chr1_1:58066930-58066949 Msa0031340:CDS 35.0%
!!! GGAGGGAAATTTTTAGCAAT+AGG + chr1_1:58066977-58066996 None:intergenic 35.0%
!! ACTAGTTAGTTTGTTACGGA+GGG + chr1_1:58066998-58067017 None:intergenic 35.0%
!! TACTAGTTAGTTTGTTACGG+AGG + chr1_1:58066999-58067018 None:intergenic 35.0%
TGTTTGGCATCTTGTCAAAT+TGG - chr1_1:58067055-58067074 Msa0031340:intron 35.0%
TAAAGCACAGACAGTACATT+TGG - chr1_1:58067090-58067109 Msa0031340:intron 35.0%
! CCTTTATAGCAGTGTCTTTT+TGG + chr1_1:58067286-58067305 None:intergenic 35.0%
CCAAAAAGACACTGCTATAA+AGG - chr1_1:58067283-58067302 Msa0031340:intron 35.0%
ATTCAGAGAATCAACAACCT+TGG + chr1_1:58067740-58067759 None:intergenic 35.0%
AATTGTTATGTGATAGGAGG+AGG - chr1_1:58067812-58067831 Msa0031340:intron 35.0%
!! GATGACCTTTTTGAAAGAAG+AGG - chr1_1:58067872-58067891 Msa0031340:intron 35.0%
GCATCAGAATCAGTTACTAT+CGG + chr1_1:58067906-58067925 None:intergenic 35.0%
! TGTTTCTGCAACTTCCATAA+AGG - chr1_1:58067959-58067978 Msa0031340:intron 35.0%
TGAAGCAAAAAATACCAGTG+TGG - chr1_1:58067992-58068011 Msa0031340:intron 35.0%
TCATCAATAGTAACATCCTC+AGG + chr1_1:58068275-58068294 None:intergenic 35.0%
ACTAACATGGGCAATATTGT+AGG - chr1_1:58068351-58068370 Msa0031340:intron 35.0%
! GTGGAAACATTTTCCAAGTA+TGG - chr1_1:58068376-58068395 Msa0031340:intron 35.0%
TGGATTAACATGTCTACACA+TGG - chr1_1:58068570-58068589 Msa0031340:intron 35.0%
! AATCTTTGGCAAGACACTTT+TGG + chr1_1:58068808-58068827 None:intergenic 35.0%
GTGTCTTGCCAAAGATTAAA+AGG - chr1_1:58068811-58068830 Msa0031340:intron 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr1_1:58068914-58068933 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr1_1:58068914-58068933 Msa0031340:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + chr1_1:58068919-58068938 None:intergenic 35.0%
!!! GAAAACATCAGACTAGCTTT+TGG - chr1_1:58069081-58069100 Msa0031340:intron 35.0%
CATGCAATTCATATGAAGCT+GGG + chr1_1:58069124-58069143 None:intergenic 35.0%
TCATGCAATTCATATGAAGC+TGG + chr1_1:58069125-58069144 None:intergenic 35.0%
! GAACTGATTCTGTTTGAAAC+AGG - chr1_1:58069147-58069166 Msa0031340:intron 35.0%
ATCAACATAGAGCTTAACAC+GGG + chr1_1:58069191-58069210 None:intergenic 35.0%
! CTCTATGTTGATAAAGAGAC+AGG - chr1_1:58069199-58069218 Msa0031340:intron 35.0%
AAGAAAAAAGGGAGATGCAT+TGG - chr1_1:58069222-58069241 Msa0031340:intron 35.0%
!! TGCATTGGTTACATATCTCA+AGG - chr1_1:58069237-58069256 Msa0031340:intron 35.0%
AATTCAAAGCTACGTATCAC+AGG + chr1_1:58069283-58069302 None:intergenic 35.0%
!! TACGTAGCTTTGAATTTGTC+AGG - chr1_1:58069287-58069306 Msa0031340:intron 35.0%
!! ACGTAGCTTTGAATTTGTCA+GGG - chr1_1:58069288-58069307 Msa0031340:intron 35.0%
TTTCTGCTGAAATTTAGCCA+GGG + chr1_1:58069421-58069440 None:intergenic 35.0%
CTAAATTTCAGCAGAAAGGT+AGG - chr1_1:58069424-58069443 Msa0031340:intron 35.0%
GGAGCTTTCTTTAAATATGC+AGG - chr1_1:58069562-58069581 Msa0031340:CDS 35.0%
AAGCTGACAAAGACAATAGA+CGG - chr1_1:58069605-58069624 Msa0031340:CDS 35.0%
AAGTTGGAAGACAAAATGCT+TGG - chr1_1:58069643-58069662 Msa0031340:intron 35.0%
ATTGATCCATTTACACCATC+TGG + chr1_1:58069809-58069828 None:intergenic 35.0%
CAGAAGCAAATTGGAAAACA+TGG + chr1_1:58070245-58070264 None:intergenic 35.0%
!! CATGTTTTCCAATTTGCTTC+TGG - chr1_1:58070243-58070262 Msa0031340:intron 35.0%
! TTTGGATGATTTGGAGTTTC+TGG - chr1_1:58070344-58070363 Msa0031340:intron 35.0%
! TGATTTTCATTGTATGGCAC+AGG - chr1_1:58070419-58070438 Msa0031340:intron 35.0%
CTCTCAGTATTGCAATTTGT+TGG - chr1_1:58070776-58070795 Msa0031340:intron 35.0%
ACTGTTATTGGTACAGGTAT+GGG + chr1_1:58071024-58071043 None:intergenic 35.0%
AGTATCACTGTTATTGGTAC+AGG + chr1_1:58071030-58071049 None:intergenic 35.0%
GTATGTGATAATCATCCTCA+GGG - chr1_1:58071126-58071145 Msa0031340:intron 35.0%
! GTTTATCCGTTTTCTTCTTC+TGG - chr1_1:58071232-58071251 Msa0031340:intron 35.0%
GAAAGTCCAGAAGAAGAAAA+CGG + chr1_1:58071241-58071260 None:intergenic 35.0%
! GTTTTCTTCTTCTGGACTTT+CGG - chr1_1:58071240-58071259 Msa0031340:intron 35.0%
ACTAAAACAAGATCTGGAGA+AGG + chr1_1:58071349-58071368 None:intergenic 35.0%
AAACCCTTGAAAAAGCTCAA+AGG + chr1_1:58071434-58071453 None:intergenic 35.0%
!!! TTTGAGCTTTTTCAAGGGTT+TGG - chr1_1:58071433-58071452 Msa0031340:CDS 35.0%
!! GTTTGGCATTGATATCAGTA+AGG - chr1_1:58071450-58071469 Msa0031340:intron 35.0%
GGTTTATTTATCAGGTTTGG+TGG - chr1_1:58071675-58071694 Msa0031340:intron 35.0%
AATTAAACCATCGTCTTCAC+TGG + chr1_1:58071715-58071734 None:intergenic 35.0%
AACTTGAAGGTGAATGAGTT+AGG - chr1_1:58071796-58071815 Msa0031340:intron 35.0%
CTTATTAGGAACTGTGAATC+TGG + chr1_1:58071836-58071855 None:intergenic 35.0%
AATGCTAATCTCACATCACA+GGG + chr1_1:58072283-58072302 None:intergenic 35.0%
! CGTTTTCTTGGAGCAATTTC+TGG + chr1_1:58065622-58065641 None:intergenic 40.0%
!! TTTAACTGAGCTTGTTACGC+AGG - chr1_1:58065747-58065766 Msa0031340:three_prime_UTR 40.0%
AAAATGTCGCAGATGTTGGA+TGG - chr1_1:58065772-58065791 Msa0031340:three_prime_UTR 40.0%
GGAGAGAATCAACAACAACT+TGG - chr1_1:58065804-58065823 Msa0031340:three_prime_UTR 40.0%
AAGAAGAATTGGGTCTTTGC+GGG + chr1_1:58066054-58066073 None:intergenic 40.0%
GAAGAAGAATTGGGTCTTTG+CGG + chr1_1:58066055-58066074 None:intergenic 40.0%
CCTGCAGTTGAAGAAGAATT+GGG + chr1_1:58066064-58066083 None:intergenic 40.0%
ACCTGCAGTTGAAGAAGAAT+TGG + chr1_1:58066065-58066084 None:intergenic 40.0%
AATTCTTCTTCACCATCAGG+CGG + chr1_1:58066512-58066531 None:intergenic 40.0%
AGAGTCTTAGGGCATATAAG+CGG - chr1_1:58066564-58066583 Msa0031340:intron 40.0%
TAAACCTAACCCCAAATCCT+AGG + chr1_1:58066713-58066732 None:intergenic 40.0%
TCGAAGCTTATGTGGTCATA+GGG - chr1_1:58066769-58066788 Msa0031340:intron 40.0%
! TGAACCTTCTGTCTTGTTGA+TGG - chr1_1:58067133-58067152 Msa0031340:intron 40.0%
! GAACCTTCTGTCTTGTTGAT+GGG - chr1_1:58067134-58067153 Msa0031340:intron 40.0%
AATCCCATCAACAAGACAGA+AGG + chr1_1:58067140-58067159 None:intergenic 40.0%
! TTGAGAACTAGTTTGGCAGT+TGG + chr1_1:58067253-58067272 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - chr1_1:58067331-58067350 Msa0031340:CDS 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr1_1:58067332-58067351 Msa0031340:CDS 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr1_1:58067338-58067357 Msa0031340:CDS 40.0%
GTGTTTGGATTGAGGGTTTA+GGG - chr1_1:58067339-58067358 Msa0031340:CDS 40.0%
TGTTTGGATTGAGGGTTTAG+GGG - chr1_1:58067340-58067359 Msa0031340:CDS 40.0%
! CATTTCCTTAAGGGTGTGTT+TGG + chr1_1:58067569-58067588 None:intergenic 40.0%
! ATAAGATGAACAGATAGCGG+CGG + chr1_1:58068069-58068088 None:intergenic 40.0%
TATTGACCTCATTCTGTTCC+AGG - chr1_1:58068181-58068200 Msa0031340:CDS 40.0%
CTAATAAACCTCCTGACAGT+TGG - chr1_1:58068207-58068226 Msa0031340:CDS 40.0%
AATTCAAACCAACTGTCAGG+AGG + chr1_1:58068218-58068237 None:intergenic 40.0%
ATGGGCAATATTGTAGGTTG+TGG - chr1_1:58068357-58068376 Msa0031340:intron 40.0%
!! GCTAGTTCTAAAGAGTTGCT+TGG + chr1_1:58068780-58068799 None:intergenic 40.0%
! CAGGTTGCCCTTTTAATCTT+TGG + chr1_1:58068822-58068841 None:intergenic 40.0%
CAAAGATTAAAAGGGCAACC+TGG - chr1_1:58068820-58068839 Msa0031340:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr1_1:58068920-58068939 None:intergenic 40.0%
!! TTACACAAGAGGCTGTTTTC+AGG - chr1_1:58068925-58068944 Msa0031340:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr1_1:58068965-58068984 None:intergenic 40.0%
TTACCCTTCTGTCTTGCAAA+AGG - chr1_1:58069004-58069023 Msa0031340:intron 40.0%
! CAACCTTTTGCAAGACAGAA+GGG + chr1_1:58069010-58069029 None:intergenic 40.0%
! ACAACCTTTTGCAAGACAGA+AGG + chr1_1:58069011-58069030 None:intergenic 40.0%
!!! AACATCAGACTAGCTTTTGG+AGG - chr1_1:58069084-58069103 Msa0031340:intron 40.0%
!!! AGACTAGCTTTTGGAGGTTT+TGG - chr1_1:58069090-58069109 Msa0031340:intron 40.0%
TCAACATAGAGCTTAACACG+GGG + chr1_1:58069190-58069209 None:intergenic 40.0%
TGTATATCAGGAACCATCAG+TGG - chr1_1:58069329-58069348 Msa0031340:intron 40.0%
! CTAGCAATCCAACTTTTGGA+TGG - chr1_1:58069354-58069373 Msa0031340:intron 40.0%
CTTTCTGCTGAAATTTAGCC+AGG + chr1_1:58069422-58069441 None:intergenic 40.0%
CTGGCTAAATTTCAGCAGAA+AGG - chr1_1:58069420-58069439 Msa0031340:intron 40.0%
TAGTTAACTATCACTCCTGC+TGG - chr1_1:58069531-58069550 Msa0031340:intron 40.0%
! ATTGTCTTTGTCAGCTTGCT+TGG + chr1_1:58069602-58069621 None:intergenic 40.0%
TGGAAGACAAAATGCTTGGA+TGG - chr1_1:58069647-58069666 Msa0031340:intron 40.0%
GGAAGACAAAATGCTTGGAT+GGG - chr1_1:58069648-58069667 Msa0031340:intron 40.0%
GAAGACAAAATGCTTGGATG+GGG - chr1_1:58069649-58069668 Msa0031340:intron 40.0%
TCAGTGAACTCAAGGATCAA+CGG + chr1_1:58069846-58069865 None:intergenic 40.0%
AAATGCACTCAGTGAACTCA+AGG + chr1_1:58069854-58069873 None:intergenic 40.0%
! TGAGTTCACTGAGTGCATTT+TGG - chr1_1:58069854-58069873 Msa0031340:CDS 40.0%
! TTTTCATTGTATGGCACAGG+TGG - chr1_1:58070422-58070441 Msa0031340:intron 40.0%
ATATCAACCCTCATTTCAGC+AGG + chr1_1:58070506-58070525 None:intergenic 40.0%
! ACCATAGCTGTCCATCATTT+TGG - chr1_1:58070586-58070605 Msa0031340:intron 40.0%
!! TCCAAAATGATGGACAGCTA+TGG + chr1_1:58070590-58070609 None:intergenic 40.0%
! GCTGTCCATCATTTTGGATT+TGG - chr1_1:58070592-58070611 Msa0031340:intron 40.0%
ACTACCTTGACTGCATCTAT+AGG + chr1_1:58070913-58070932 None:intergenic 40.0%
CTGTTATTGGTACAGGTATG+GGG + chr1_1:58071023-58071042 None:intergenic 40.0%
CACTGTTATTGGTACAGGTA+TGG + chr1_1:58071025-58071044 None:intergenic 40.0%
GTCAAACACAACAGAAACAC+AGG + chr1_1:58071069-58071088 None:intergenic 40.0%
CAGCAAACATGGAAATACAG+AGG + chr1_1:58071103-58071122 None:intergenic 40.0%
! TGTATTTCCATGTTTGCTGC+AGG - chr1_1:58071104-58071123 Msa0031340:intron 40.0%
GGTATGTGATAATCATCCTC+AGG - chr1_1:58071125-58071144 Msa0031340:intron 40.0%
TTAACCAAAACAACACCCTG+AGG + chr1_1:58071144-58071163 None:intergenic 40.0%
GCGTGCATAGAATTGATGAA+TGG - chr1_1:58071189-58071208 Msa0031340:intron 40.0%
! GCTATGCTGCTTATATGACA+AGG + chr1_1:58071296-58071315 None:intergenic 40.0%
TATAAGCAGCATAGCCTACT+TGG - chr1_1:58071301-58071320 Msa0031340:CDS 40.0%
!!! GCATGCTGACTTTCTTTTGT+TGG - chr1_1:58071323-58071342 Msa0031340:CDS 40.0%
TTTCCTTGCGGGTAAAGTAT+AGG - chr1_1:58071496-58071515 Msa0031340:intron 40.0%
TTCCTTGCGGGTAAAGTATA+GGG - chr1_1:58071497-58071516 Msa0031340:intron 40.0%
CTGTAACAACAGTGAGAAGA+CGG + chr1_1:58071532-58071551 None:intergenic 40.0%
TAATTAACCATGCCACAGTC+CGG - chr1_1:58071730-58071749 Msa0031340:intron 40.0%
TCACAGTTCCTAATAAGTCC+AGG - chr1_1:58071839-58071858 Msa0031340:intron 40.0%
TTTCAAGGCCTGGACTTATT+AGG + chr1_1:58071850-58071869 None:intergenic 40.0%
TCTTGCAATATTTCAAGGCC+TGG + chr1_1:58071860-58071879 None:intergenic 40.0%
GGGGTTCTTGCAATATTTCA+AGG + chr1_1:58071865-58071884 None:intergenic 40.0%
ACGTAGTAATCCATGAGCTT+CGG + chr1_1:58071886-58071905 None:intergenic 40.0%
AAAAAAGCTGCAACTTGCCA+TGG - chr1_1:58072230-58072249 Msa0031340:five_prime_UTR 40.0%
GAATGCTAATCTCACATCAC+AGG + chr1_1:58072284-58072303 None:intergenic 40.0%
TGGGTTTCTATTCGCTACAG+TGG + chr1_1:58065602-58065621 None:intergenic 45.0%
AGAAGTTAGCGTGTACCAGT+AGG + chr1_1:58065687-58065706 None:intergenic 45.0%
! GCTGCGGATTTGAGATGAAA+AGG + chr1_1:58065718-58065737 None:intergenic 45.0%
GGTGAAAATGTCGCAGATGT+TGG - chr1_1:58065768-58065787 Msa0031340:three_prime_UTR 45.0%
GATGTTGGATGGTACGTTCT+TGG - chr1_1:58065783-58065802 Msa0031340:three_prime_UTR 45.0%
TGGTCCTTATGTCTTCTCTG+AGG - chr1_1:58065824-58065843 Msa0031340:three_prime_UTR 45.0%
TGCACCTCAGAGAAGACATA+AGG + chr1_1:58065831-58065850 None:intergenic 45.0%
!! TATGTCTTCTCTGAGGTGCA+AGG - chr1_1:58065831-58065850 Msa0031340:three_prime_UTR 45.0%
GGTCTGAAGGAAGAACTGAA+TGG - chr1_1:58065987-58066006 Msa0031340:three_prime_UTR 45.0%
CCCAATTCTTCTTCAACTGC+AGG - chr1_1:58066061-58066080 Msa0031340:CDS 45.0%
! ACCATTTTACAACCGTCACG+AGG - chr1_1:58066169-58066188 Msa0031340:intron 45.0%
ACCTCGTGACGGTTGTAAAA+TGG + chr1_1:58066173-58066192 None:intergenic 45.0%
TTATGCTGAGGCTGAAGATG+TGG - chr1_1:58066376-58066395 Msa0031340:intron 45.0%
ATGGCAAAAGGAGATCAAGG+AGG - chr1_1:58066412-58066431 Msa0031340:intron 45.0%
CAAGTGGAAGCTTCGGAATT+CGG - chr1_1:58066443-58066462 Msa0031340:intron 45.0%
GAGTCTTAGGGCATATAAGC+GGG - chr1_1:58066565-58066584 Msa0031340:intron 45.0%
AAAGCTCATGTACCAACCTG+AGG + chr1_1:58066593-58066612 None:intergenic 45.0%
CTCGAAGCTTATGTGGTCAT+AGG - chr1_1:58066768-58066787 Msa0031340:intron 45.0%
!! GTTAGTTTGTTACGGAGGGA+GGG + chr1_1:58066994-58067013 None:intergenic 45.0%
!! AGTTAGTTTGTTACGGAGGG+AGG + chr1_1:58066995-58067014 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+GGG - chr1_1:58067341-58067360 Msa0031340:CDS 45.0%
TTTGGATTGAGGGTTTAGGG+GGG - chr1_1:58067342-58067361 Msa0031340:CDS 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr1_1:58067551-58067570 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr1_1:58067555-58067574 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG + chr1_1:58067561-58067580 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG + chr1_1:58067562-58067581 None:intergenic 45.0%
TCCATCCAAACACACCCTTA+AGG - chr1_1:58067561-58067580 Msa0031340:intron 45.0%
! TCCTTAAGGGTGTGTTTGGA+TGG + chr1_1:58067565-58067584 None:intergenic 45.0%
GTCATCTCTTCAACCCCATA+AGG + chr1_1:58067858-58067877 None:intergenic 45.0%
AATACCAGTGTGGTAGCTGT+TGG - chr1_1:58068002-58068021 Msa0031340:intron 45.0%
ATACCAGTGTGGTAGCTGTT+GGG - chr1_1:58068003-58068022 Msa0031340:intron 45.0%
TAGCTTCCTGGAACAGAATG+AGG + chr1_1:58068190-58068209 None:intergenic 45.0%
! CAGGAGGTTTATTAGCTTCC+TGG + chr1_1:58068202-58068221 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr1_1:58068958-58068977 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr1_1:58068959-58068978 None:intergenic 45.0%
!! GGCTCTAGCAATCCAACTTT+TGG - chr1_1:58069350-58069369 Msa0031340:intron 45.0%
! TTTTGGATGGTGCGCCTTTT+CGG - chr1_1:58069367-58069386 Msa0031340:intron 45.0%
ATCTTATCACCAGGCCGAAA+AGG + chr1_1:58069384-58069403 None:intergenic 45.0%
GACATCGGAATCTTATCACC+AGG + chr1_1:58069393-58069412 None:intergenic 45.0%
ACTCAAGGATCAACGGACAT+GGG + chr1_1:58069839-58069858 None:intergenic 45.0%
AACTCAAGGATCAACGGACA+TGG + chr1_1:58069840-58069859 None:intergenic 45.0%
CACACTCACCAGAAGCAAAT+TGG + chr1_1:58070254-58070273 None:intergenic 45.0%
! TGAAGCAAGAAAGCATGCTG+TGG - chr1_1:58070272-58070291 Msa0031340:intron 45.0%
TAGCGAAGGACAACAGTTGT+TGG + chr1_1:58070473-58070492 None:intergenic 45.0%
CAGGACTGAACATATAGCGA+AGG + chr1_1:58070487-58070506 None:intergenic 45.0%
TGTTCAGTCCTGCTGAAATG+AGG - chr1_1:58070495-58070514 Msa0031340:intron 45.0%
GTTCAGTCCTGCTGAAATGA+GGG - chr1_1:58070496-58070515 Msa0031340:intron 45.0%
AAAGAGGAATGCACGAAGCT+TGG - chr1_1:58070886-58070905 Msa0031340:intron 45.0%
TGGACCTATAGATGCAGTCA+AGG - chr1_1:58070906-58070925 Msa0031340:intron 45.0%
TCACATACCTGCAGCAAACA+TGG + chr1_1:58071114-58071133 None:intergenic 45.0%
!!! TCATCCTCAGGGTGTTGTTT+TGG - chr1_1:58071137-58071156 Msa0031340:intron 45.0%
AGAAAGTCAGCATGCCAAGT+AGG + chr1_1:58071318-58071337 None:intergenic 45.0%
ATCCCTATACTTTACCCGCA+AGG + chr1_1:58071502-58071521 None:intergenic 45.0%
ATACATGCCAGTGAAGACGA+TGG - chr1_1:58071705-58071724 Msa0031340:intron 45.0%
AATTAACCATGCCACAGTCC+GGG - chr1_1:58071731-58071750 Msa0031340:intron 45.0%
TAGCATCTTCCTCTAGATCC+CGG + chr1_1:58071752-58071771 None:intergenic 45.0%
AGAGGAAGATGCTAAGCGAT+TGG - chr1_1:58071758-58071777 Msa0031340:intron 45.0%
! CAGTTTGGTGAGGAACTTGA+AGG - chr1_1:58071783-58071802 Msa0031340:intron 45.0%
GTAGTAATCCATGAGCTTCG+GGG + chr1_1:58071884-58071903 None:intergenic 45.0%
CGTAGTAATCCATGAGCTTC+GGG + chr1_1:58071885-58071904 None:intergenic 45.0%
CTGCAAAACTGCAAAAAGCG+AGG + chr1_1:58071915-58071934 None:intergenic 45.0%
CCAATGGCGTTAATGTTCCA+TGG + chr1_1:58072250-58072269 None:intergenic 45.0%
CCATGGAACATTAACGCCAT+TGG - chr1_1:58072247-58072266 Msa0031340:five_prime_UTR 45.0%
ACAGGGTCAATCAACACCAA+TGG + chr1_1:58072266-58072285 None:intergenic 45.0%
!!! TTTTTTTAATTTTTTATGAA+TGG - chr1_1:58068662-58068681 Msa0031340:intron 5.0%
! GTCGTCGTCTCTAGAAACCA+CGG - chr1_1:58065542-58065561 Msa0031340:three_prime_UTR 50.0%
! TCGTCGTCTCTAGAAACCAC+GGG - chr1_1:58065543-58065562 Msa0031340:three_prime_UTR 50.0%
!! ATGCAATGAAAGAGTGCCCG+TGG + chr1_1:58065562-58065581 None:intergenic 50.0%
TATTCGCTACAGTGGCAGCA+AGG + chr1_1:58065594-58065613 None:intergenic 50.0%
CAGTAGGTTGCGGTTGATTG+TGG + chr1_1:58065671-58065690 None:intergenic 50.0%
CACAATCAACCGCAACCTAC+TGG - chr1_1:58065669-58065688 Msa0031340:three_prime_UTR 50.0%
TAGCGTGTACCAGTAGGTTG+CGG + chr1_1:58065681-58065700 None:intergenic 50.0%
CACTGTCAGCATATGGCATG+AGG - chr1_1:58066134-58066153 Msa0031340:intron 50.0%
AAAGGAGATCAAGGAGGCTG+AGG - chr1_1:58066418-58066437 Msa0031340:intron 50.0%
TGAGGCACAAGTGGAAGCTT+CGG - chr1_1:58066436-58066455 Msa0031340:intron 50.0%
CAGTAGGAGAAGACGTTGAG+AGG - chr1_1:58066477-58066496 Msa0031340:intron 50.0%
! TATAAGCGGGTTCCTCAGGT+TGG - chr1_1:58066578-58066597 Msa0031340:intron 50.0%
! GATGCCTAGGATTTGGGGTT+AGG - chr1_1:58066706-58066725 Msa0031340:intron 50.0%
AGCTTATGTGGTCATAGGGC+TGG - chr1_1:58066773-58066792 Msa0031340:intron 50.0%
AGGTCACATAGGATCCCTGA+AGG - chr1_1:58066883-58066902 Msa0031340:intron 50.0%
AAGGTGTAGCCCAGTGGTAT+GGG - chr1_1:58066902-58066921 Msa0031340:intron 50.0%
ATGTCCCAACCCATACCACT+GGG + chr1_1:58066914-58066933 None:intergenic 50.0%
AATGTCCCAACCCATACCAC+TGG + chr1_1:58066915-58066934 None:intergenic 50.0%
!! GGTATGGGTTGGGACATTGA+AGG - chr1_1:58066917-58066936 Msa0031340:CDS 50.0%
TAGGGGTCGAACACTAGAGT+CGG + chr1_1:58066958-58066977 None:intergenic 50.0%
TTGGATTGAGGGTTTAGGGG+GGG - chr1_1:58067343-58067362 Msa0031340:CDS 50.0%
TTGGATGGAGGGTTTAGGAG+GGG + chr1_1:58067550-58067569 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr1_1:58067552-58067571 None:intergenic 50.0%
! TCTGGTAGCGCTTTGCCTTA+TGG - chr1_1:58067840-58067859 Msa0031340:intron 50.0%
! CTGGTAGCGCTTTGCCTTAT+GGG - chr1_1:58067841-58067860 Msa0031340:intron 50.0%
! TGGTAGCGCTTTGCCTTATG+GGG - chr1_1:58067842-58067861 Msa0031340:intron 50.0%
! GCGGACACCTTCTTTTCTTC+TGG + chr1_1:58068050-58068069 None:intergenic 50.0%
TTATGTCACTGGGTTGCCTG+AGG - chr1_1:58068256-58068275 Msa0031340:intron 50.0%
ATGTGCCCAGAAAAGGGAAG+GGG + chr1_1:58068717-58068736 None:intergenic 50.0%
CATGTGCCCAGAAAAGGGAA+GGG + chr1_1:58068718-58068737 None:intergenic 50.0%
ACATGTGCCCAGAAAAGGGA+AGG + chr1_1:58068719-58068738 None:intergenic 50.0%
GAGCACATGTGCCCAGAAAA+GGG + chr1_1:58068723-58068742 None:intergenic 50.0%
TGAGCACATGTGCCCAGAAA+AGG + chr1_1:58068724-58068743 None:intergenic 50.0%
! AAAATGGTGGGACCCCTTAC+CGG + chr1_1:58068874-58068893 None:intergenic 50.0%
! GTAAGGGGTCCCACCATTTT+TGG - chr1_1:58068874-58068893 Msa0031340:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_1:58068981-58069000 Msa0031340:intron 50.0%
GCAAGACAGAAGGGTAACCT+TGG + chr1_1:58069001-58069020 None:intergenic 50.0%
!!! ACACGGGGCTTTTTGGTTTC+TGG + chr1_1:58069175-58069194 None:intergenic 50.0%
! GAGCTTAACACGGGGCTTTT+TGG + chr1_1:58069182-58069201 None:intergenic 50.0%
TGGATTGCTAGAGCCACTGA+TGG + chr1_1:58069345-58069364 None:intergenic 50.0%
AAGGCGCACCATCCAAAAGT+TGG + chr1_1:58069365-58069384 None:intergenic 50.0%
TTAGCCAGGGAGACAGACAT+CGG + chr1_1:58069408-58069427 None:intergenic 50.0%
ATGCTTGGATGGGGTATGCT+TGG - chr1_1:58069658-58069677 Msa0031340:intron 50.0%
TCACATGTGTAGCGATGCAC+TGG + chr1_1:58070567-58070586 None:intergenic 50.0%
!! CAAGGACAGAAAAGGTGCTC+AGG - chr1_1:58071167-58071186 Msa0031340:intron 50.0%
GCTAAGCGATTGGAGCAGTT+TGG - chr1_1:58071768-58071787 Msa0031340:intron 50.0%
GTGGAAGCTTCGGAATTCGG+TGG - chr1_1:58066446-58066465 Msa0031340:intron 55.0%
! GAAGCTTCGGAATTCGGTGG+TGG - chr1_1:58066449-58066468 Msa0031340:intron 55.0%
! GGCATATAAGCGGGTTCCTC+AGG - chr1_1:58066574-58066593 Msa0031340:intron 55.0%
ACCACTGGGCTACACCTTCA+GGG + chr1_1:58066900-58066919 None:intergenic 55.0%
TACCACTGGGCTACACCTTC+AGG + chr1_1:58066901-58066920 None:intergenic 55.0%
! GAAGGTGTAGCCCAGTGGTA+TGG - chr1_1:58066901-58066920 Msa0031340:intron 55.0%
TGTAGCCCAGTGGTATGGGT+TGG - chr1_1:58066906-58066925 Msa0031340:intron 55.0%
GTAGCCCAGTGGTATGGGTT+GGG - chr1_1:58066907-58066926 Msa0031340:intron 55.0%
AGGGGTCGAACACTAGAGTC+GGG + chr1_1:58066957-58066976 None:intergenic 55.0%
ATTGAGGGTTTAGGGGGGGA+AGG - chr1_1:58067347-58067366 Msa0031340:CDS 55.0%
TTGAGGGTTTAGGGGGGGAA+GGG - chr1_1:58067348-58067367 Msa0031340:CDS 55.0%
TGGAGGGTTTAGGAGGGGAA+GGG + chr1_1:58067545-58067564 None:intergenic 55.0%
ATGGAGGGTTTAGGAGGGGA+AGG + chr1_1:58067546-58067565 None:intergenic 55.0%
CTTCCCAACAGCTACCACAC+TGG + chr1_1:58068009-58068028 None:intergenic 55.0%
GTGTGGTAGCTGTTGGGAAG+AGG - chr1_1:58068009-58068028 Msa0031340:intron 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr1_1:58068846-58068865 Msa0031340:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr1_1:58068847-58068866 Msa0031340:intron 55.0%
AAGGGTAACCTTGGCGCAAC+TGG + chr1_1:58068992-58069011 None:intergenic 55.0%
GATTCCGATGTCTGTCTCCC+TGG - chr1_1:58069401-58069420 Msa0031340:intron 55.0%
TTCCTCTAGATCCCGGACTG+TGG + chr1_1:58071745-58071764 None:intergenic 55.0%
! GCGATTGGAGCAGTTTGGTG+AGG - chr1_1:58071773-58071792 Msa0031340:intron 55.0%
TGCAAGAACCCCGAAGCTCA+TGG - chr1_1:58071873-58071892 Msa0031340:intron 55.0%
CAAGGAGGCTGAGGCACAAG+TGG - chr1_1:58066427-58066446 Msa0031340:intron 60.0%
! GCTTCGGAATTCGGTGGTGG+TGG - chr1_1:58066452-58066471 Msa0031340:intron 60.0%
!! TTCGGTGGTGGTGGTGCAGT+AGG - chr1_1:58066461-58066480 Msa0031340:intron 60.0%
! TCACCATCAGGCGGTGTCGA+AGG + chr1_1:58066503-58066522 None:intergenic 60.0%
! TCCCTGAAGGTGTAGCCCAG+TGG - chr1_1:58066896-58066915 Msa0031340:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr1_1:58067540-58067559 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr1_1:58067541-58067560 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr1_1:58067542-58067561 None:intergenic 60.0%
TGATAGGAGGAGGCCACGTC+TGG - chr1_1:58067822-58067841 Msa0031340:intron 60.0%
! AGGCAAAGCGCTACCAGACG+TGG + chr1_1:58067838-58067857 None:intergenic 60.0%
! GGGAGCCCCTTCCCTTTTCT+GGG - chr1_1:58068709-58068728 Msa0031340:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+AGG + chr1_1:58068841-58068860 None:intergenic 60.0%
TTACCGGACCCTGCGTATGC+GGG + chr1_1:58068858-58068877 None:intergenic 60.0%
CTTACCGGACCCTGCGTATG+CGG + chr1_1:58068859-58068878 None:intergenic 60.0%
GCATACGCAGGGTCCGGTAA+GGG - chr1_1:58068858-58068877 Msa0031340:intron 60.0%
CATACGCAGGGTCCGGTAAG+GGG - chr1_1:58068859-58068878 Msa0031340:intron 60.0%
TCACTCCTGCTGGTGCCTGA+TGG - chr1_1:58069541-58069560 Msa0031340:intron 60.0%
AAGCTCCATCAGGCACCAGC+AGG + chr1_1:58069549-58069568 None:intergenic 60.0%
CTAGATCCCGGACTGTGGCA+TGG + chr1_1:58071740-58071759 None:intergenic 60.0%
TGCCACAGTCCGGGATCTAG+AGG - chr1_1:58071740-58071759 Msa0031340:intron 60.0%
AGGCCTTCGACACCGCCTGA+TGG - chr1_1:58066497-58066516 Msa0031340:intron 65.0%
AGGGTTTAGGGGGGGAAGGG+AGG - chr1_1:58067351-58067370 Msa0031340:CDS 65.0%
GGGTTTAGGGGGGGAAGGGA+GGG - chr1_1:58067352-58067371 Msa0031340:CDS 65.0%
GGTTTAGGGGGGGAAGGGAG+GGG - chr1_1:58067353-58067372 Msa0031340:CDS 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr1_1:58067536-58067555 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr1_1:58067537-58067556 None:intergenic 65.0%
! GGGGAGCCCCTTCCCTTTTC+TGG - chr1_1:58068708-58068727 Msa0031340:intron 65.0%
CGCATACGCAGGGTCCGGTA+AGG - chr1_1:58068857-58068876 Msa0031340:intron 65.0%
! GATGGTGCGCCTTTTCGGCC+TGG - chr1_1:58069372-58069391 Msa0031340:intron 65.0%
TAGGGGGGGAAGGGAGGGGA+TGG - chr1_1:58067357-58067376 Msa0031340:CDS 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_1:58068852-58068871 Msa0031340:intron 70.0%
CCTCCCGCCCGTGCGTGGAT+CGG + chr1_1:58065519-58065538 None:intergenic 75.0%
ACGTTCCTCCCGCCCGTGCG+TGG + chr1_1:58065524-58065543 None:intergenic 75.0%
! CCGATCCACGCACGGGCGGG+AGG - chr1_1:58065516-58065535 Msa0031340:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58065515 58072323 58065515 ID=Msa0031340;Name=Msa0031340
chr1_1 mRNA 58065515 58072323 58065515 ID=Msa0031340-mRNA-1;Parent=Msa0031340;Name=Msa0031340-mRNA-1;_AED=0.16;_eAED=0.16;_QI=127|0.91|1|1|1|1|13|511|457
chr1_1 exon 58065515 58066149 58065515 ID=Msa0031340-mRNA-1:exon:17669;Parent=Msa0031340-mRNA-1
chr1_1 exon 58066621 58066712 58066621 ID=Msa0031340-mRNA-1:exon:17668;Parent=Msa0031340-mRNA-1
chr1_1 exon 58066911 58066991 58066911 ID=Msa0031340-mRNA-1:exon:17667;Parent=Msa0031340-mRNA-1
chr1_1 exon 58067321 58067397 58067321 ID=Msa0031340-mRNA-1:exon:17666;Parent=Msa0031340-mRNA-1
chr1_1 exon 58068168 58068254 58068168 ID=Msa0031340-mRNA-1:exon:17665;Parent=Msa0031340-mRNA-1
chr1_1 exon 58068397 58068499 58068397 ID=Msa0031340-mRNA-1:exon:17664;Parent=Msa0031340-mRNA-1
chr1_1 exon 58068580 58068669 58068580 ID=Msa0031340-mRNA-1:exon:17663;Parent=Msa0031340-mRNA-1
chr1_1 exon 58069427 58069465 58069427 ID=Msa0031340-mRNA-1:exon:17662;Parent=Msa0031340-mRNA-1
chr1_1 exon 58069543 58069635 58069543 ID=Msa0031340-mRNA-1:exon:17661;Parent=Msa0031340-mRNA-1
chr1_1 exon 58069777 58070010 58069777 ID=Msa0031340-mRNA-1:exon:17660;Parent=Msa0031340-mRNA-1
chr1_1 exon 58071243 58071463 58071243 ID=Msa0031340-mRNA-1:exon:17659;Parent=Msa0031340-mRNA-1
chr1_1 exon 58071986 58072069 58071986 ID=Msa0031340-mRNA-1:exon:17658;Parent=Msa0031340-mRNA-1
chr1_1 exon 58072148 58072323 58072148 ID=Msa0031340-mRNA-1:exon:17657;Parent=Msa0031340-mRNA-1
chr1_1 five_prime_UTR 58072197 58072323 58072197 ID=Msa0031340-mRNA-1:five_prime_utr;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58072148 58072196 58072148 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58071986 58072069 58071986 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58071243 58071463 58071243 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58069777 58070010 58069777 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58069543 58069635 58069543 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58069427 58069465 58069427 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58068580 58068669 58068580 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58068397 58068499 58068397 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58068168 58068254 58068168 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58067321 58067397 58067321 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58066911 58066991 58066911 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58066621 58066712 58066621 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 CDS 58066026 58066149 58066026 ID=Msa0031340-mRNA-1:cds;Parent=Msa0031340-mRNA-1
chr1_1 three_prime_UTR 58065515 58066025 58065515 ID=Msa0031340-mRNA-1:three_prime_utr;Parent=Msa0031340-mRNA-1
Gene Sequence

>Msa0031340

ATGAATTCTGAAAATGGCTACGAAAGCCACAATCAACCGCAACCTACTGGTGAAAATGTCGCAGATGTTGGATGGTACGTTCTTGGAGAGAATCAACAACAACTTGGTCCTTATGTCTTCTCTGAGGTGCAAGTTTATGCTGAGGCTGAAGATGTGGACGAGTTTGAAAAATGGCAAAAGGAGATCAAGGAGGCTGAGGCACAAGTGGAAGCTTCGGAATTCGGTGGTGGTGGTGCAGTAGGAGAAGACGTTGAGAGGCCTTCGACACCGCCTGATGGTGAAGAAGAATTTACTGATGATGATGGGACATATAAGTGGGATAAGAGTCTTAGGGCATATAAGCGGGTTCCTCAGGAGGAGGCCACGTCTGGTAGCGCTTTGCCTTATGGGGTTGAAGAGATGACCTTTTTGAAAGAAGAGGAAGTTTTTCCGATAGTAACTGATTCTGATGCCTCAAAAATTGTTGAAGATAGTTCAAAATCGAGTGTTTCTGCAACTTCCATAAAGGAAGAAACAACTGAAGCAAAAAATACCAGTGTGGTAGCTGTTGGGAAGAGGAAGCATTCAGATAAACCAGAAGAAAAGAAGGAAGCTAATAAACCTCCTGACAGTTGGTTTGAATTAAAGGTCAATACACATGTTTATGTCACTGGGTTGCCTGAGGATGTTACTATTGATGAAGTTGTGGAAACATTTTCCAAGTATGGAATTATAAAAGAGGATCCAGAAACCAAAAAGCCCCGTGTTAAGCTCTATGTTGATAAAGAGACAGGAAGAAAAAAGGGAGATGCATTGGTTACATATCTCAAGGAACCATCAGTGGCTCTAGCAATCCAACTTTTGGATGGTGCGCCTTTTCGGCCTGGTGATAAGATTCCGATGTCTGTCTCCCTGGCTAAATTTCAGCAGAAAGGAGAGAAGTTTGTATCCAAGCAAGCTGACAAAGACAATAGACGGAAAAAGAAAACGAAAAAGTTGGAAGACAAAATGCTTGGATGGGGTGGTCGTGATGATTCAAAAGTTTTAATTCCAACAACTGTTGTCCTTCGCTATATGTTCAGTCCTGCTGAAATGAGGGCTGATGAAAATTTGCACTCAGAACTAGAAGAAGATGTTAAAGAGGAATGCACGAAGCTTGGACCTATAGATGCAGTCAAGGTATGTGATAATCATCCTCAGGGTGTTGTTTTGGTTAAATTCAAGGACAGAAAAGGTGCTCAGGCGTGCATAGAATTGATGAATGGAAGATGGTTTGGTGGTAGACAGATACATGCCAGTGAAGACGATGGTTTAATTAACCATGCCACAGTCCGGGATCTAGAGGAAGATGCTAAGCGATTGGAGCAGTTTGGTGAGGAACTTGAAGGTGAATGA

Protein sequence

>Msa0031340

MNSENGYESHNQPQPTGENVADVGWYVLGENQQQLGPYVFSEVQVYAEAEDVDEFEKWQKEIKEAEAQVEASEFGGGGAVGEDVERPSTPPDGEEEFTDDDGTYKWDKSLRAYKRVPQEEATSGSALPYGVEEMTFLKEEEVFPIVTDSDASKIVEDSSKSSVSATSIKEETTEAKNTSVVAVGKRKHSDKPEEKKEANKPPDSWFELKVNTHVYVTGLPEDVTIDEVVETFSKYGIIKEDPETKKPRVKLYVDKETGRKKGDALVTYLKEPSVALAIQLLDGAPFRPGDKIPMSVSLAKFQQKGEKFVSKQADKDNRRKKKTKKLEDKMLGWGGRDDSKVLIPTTVVLRYMFSPAEMRADENLHSELEEDVKEECTKLGPIDAVKVCDNHPQGVVLVKFKDRKGAQACIELMNGRWFGGRQIHASEDDGLINHATVRDLEEDAKRLEQFGEELEGE*