AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171290 MtrunA17_Chr1g0189371 96.450 507 13 2 1 503 1 506 0.0 992
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171290 AT5G16260.1 59.339 514 178 9 13 502 11 517 0.0 563

Find 153 sgRNAs with CRISPR-Local

Find 498 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTTCAATTTCTGAATTA+TGG 0.084752 1_4:-55980481 Msa0171290:CDS
TTCAGTTGTTTCTTCCTTTA+TGG 0.114821 1_4:+55978439 None:intergenic
TTTGACTACCATATCTTATT+TGG 0.126095 1_4:-55974415 Msa0171290:three_prime_UTR
TGACAGTTGGTTTGAATTAA+AGG 0.162229 1_4:-55978192 Msa0171290:CDS
CTGGTAGCGCTTTGCCTTAT+GGG 0.205690 1_4:-55978571 Msa0171290:CDS
ATTTCAGAGCATTTCTTAAA+TGG 0.211617 1_4:-55980560 Msa0171290:intron
TCTGGTAGCGCTTTGCCTTA+TGG 0.229159 1_4:-55978572 Msa0171290:CDS
GTCTTCAATTTCTGAATTAT+GGG 0.244458 1_4:-55980480 Msa0171290:CDS
TTTCAAGGCCTGGACTTATT+AGG 0.251138 1_4:+55974577 None:intergenic
ATAAGTGGGATAAGAGTCTT+AGG 0.253904 1_4:-55979862 Msa0171290:CDS
GGCTCTAGCAATCCAACTTT+TGG 0.263833 1_4:-55977074 Msa0171290:CDS
AACTTCCTCTTCTTTCAAAA+AGG 0.285902 1_4:+55978535 None:intergenic
TGTATCATTGGAAAAGAAAA+AGG 0.296817 1_4:-55974465 Msa0171290:three_prime_UTR
AAAACGATGAATTCTGAAAA+TGG 0.309280 1_4:-55980863 Msa0171290:exon
CGTAGTAATCCATGAGCTTC+GGG 0.311556 1_4:+55974542 None:intergenic
TATTAGTTCTCTTGTATCAT+TGG 0.313605 1_4:-55974477 Msa0171290:three_prime_UTR
TCATCCTCAGGGTGTTGTTT+TGG 0.326001 1_4:-55975287 Msa0171290:CDS
AAAATGGCAAAAGGAGATTA+AGG 0.329467 1_4:-55980005 Msa0171290:CDS
CTTATTAGGAACTGTGAATC+TGG 0.330266 1_4:+55974591 None:intergenic
ACCTGCAGTTGAAGACGAAT+TGG 0.334870 1_4:+55980436 None:intergenic
GATGTTGGATGGTACGTTCT+TGG 0.346116 1_4:-55980716 Msa0171290:CDS
ATTGTCTTTGTCAGCTTGCT+TGG 0.355106 1_4:+55976825 None:intergenic
TTCGGTGGTGGTGGTGTAGT+AGG 0.376500 1_4:-55979953 Msa0171290:CDS
GTGTTATAATACTCATGATT+TGG 0.385876 1_4:+55974363 None:intergenic
AATACACATGTTTATGTCAC+TGG 0.389054 1_4:-55978167 Msa0171290:CDS
GGGGTTCTTGCAATATTTCA+AGG 0.390159 1_4:+55974562 None:intergenic
CAAGTGGAAGCTTCGGAATT+CGG 0.395495 1_4:-55979971 Msa0171290:CDS
CTTTCTGCTGAAATTTAGCC+AGG 0.400350 1_4:+55977005 None:intergenic
GGCATATAAGCGGGTTCCTC+AGG 0.404098 1_4:-55979840 Msa0171290:intron
TGTTTCTGCAACTTCCATAA+AGG 0.417508 1_4:-55978453 Msa0171290:CDS
AACTTGAAGGTGAATGAGTT+AGG 0.421155 1_4:-55974628 Msa0171290:exon
TCACCATCAGGCGGTGTTGA+AGG 0.424907 1_4:+55979914 None:intergenic
GCTAAGCGATTGGAGCAGTT+TGG 0.425973 1_4:-55974656 Msa0171290:CDS
ACGTAGTAATCCATGAGCTT+CGG 0.430518 1_4:+55974541 None:intergenic
ACTAGAAGAAGATGTTAAAG+AGG 0.441572 1_4:-55975554 Msa0171290:CDS
GTAAATTCTTCTTCACCATC+AGG 0.442135 1_4:+55979902 None:intergenic
GTTAAATTCAAGGACAGAAA+AGG 0.445666 1_4:-55975265 Msa0171290:CDS
TAATTAACCATGCCACAGTC+CGG 0.453104 1_4:-55974694 Msa0171290:CDS
ATTTGGAAAATTGCGACATT+CGG 0.457076 1_4:-55974398 Msa0171290:three_prime_UTR
ATCTTATCACCAGGCCGAAA+AGG 0.458485 1_4:+55977043 None:intergenic
GAAGACGAATTGGGTCTTTG+AGG 0.461752 1_4:+55980446 None:intergenic
AAGACGAATTGGGTCTTTGA+GGG 0.462016 1_4:+55980447 None:intergenic
AATTAAACCATCGTCTTCAC+TGG 0.462591 1_4:+55974712 None:intergenic
TGATAGGAGGAGGCCACGTC+TGG 0.466721 1_4:-55978590 Msa0171290:intron
ACTACCTTGACTGCATCTAT+AGG 0.470187 1_4:+55975514 None:intergenic
TAGCGAAGGACAACAGTTGT+TGG 0.472530 1_4:+55975954 None:intergenic
TGAGGCGCAAGTGGAAGCTT+CGG 0.475916 1_4:-55979978 Msa0171290:CDS
GTCATCTCTTCAACCCCATA+AGG 0.479721 1_4:+55978557 None:intergenic
CACAATCAACCGCAACCTAC+TGG 0.481272 1_4:-55980830 Msa0171290:intron
AAAGAGGAATGCACGAAGCT+TGG 0.484045 1_4:-55975538 Msa0171290:CDS
CAGTAGGTTGCGGTTGATTG+TGG 0.484700 1_4:+55980831 None:intergenic
CCCAATTCGTCTTCAACTGC+AGG 0.485119 1_4:-55980437 Msa0171290:intron
TTTAATTCAAACCAACTGTC+AGG 0.485198 1_4:+55978194 None:intergenic
GGTTTATTTATCAGGTTTGG+TGG 0.486619 1_4:-55974749 Msa0171290:intron
CTCTATGTTGATAAAGAGAC+AGG 0.489825 1_4:-55977225 Msa0171290:CDS
GGTATGTGATAATCATCCTC+AGG 0.490183 1_4:-55975299 Msa0171290:CDS
AAGGCGCACCATCCAAAAGT+TGG 0.491090 1_4:+55977062 None:intergenic
CCATGGAACATTAACGCCAT+TGG 0.492816 1_4:-55974177 Msa0171290:three_prime_UTR
CCTGCAGTTGAAGACGAATT+GGG 0.493187 1_4:+55980437 None:intergenic
GATTCCGATGTCTGTCTCCC+TGG 0.495254 1_4:-55977023 Msa0171290:CDS
TCTTGCAATATTTCAAGGCC+TGG 0.496929 1_4:+55974567 None:intergenic
GCTTCGGAATTCGGTGGTGG+TGG 0.497213 1_4:-55979962 Msa0171290:CDS
CAAGTATGGAATTATAAAAG+AGG 0.501539 1_4:-55978022 Msa0171290:intron
AATTTAATTAGTAGTCGAAT+GGG 0.502642 1_4:-55974307 Msa0171290:three_prime_UTR
TGGAAGACAAAATGCTTGGA+TGG 0.504268 1_4:-55976777 Msa0171290:CDS
AATACCAGTGTGGTAGCTGT+TGG 0.507660 1_4:-55978410 Msa0171290:CDS
GAATGCTAATCTCACATCAC+AGG 0.509001 1_4:+55974143 None:intergenic
AATTAACCATGCCACAGTCC+GGG 0.512168 1_4:-55974693 Msa0171290:CDS
CCTCTCGCCCGTGCGTGGAT+CGG 0.515772 1_4:+55980980 None:intergenic
CTAATAAACCTCCTGACAGT+TGG 0.516022 1_4:-55978205 Msa0171290:CDS
ATACCAGTGTGGTAGCTGTT+GGG 0.517744 1_4:-55978409 Msa0171290:CDS
TAAGGAGGCTGAGGCGCAAG+TGG 0.518541 1_4:-55979987 Msa0171290:CDS
TGCAAGAACCCCGAAGCTCA+TGG 0.518989 1_4:-55974551 Msa0171290:three_prime_UTR
GAATTTAATTAGTAGTCGAA+TGG 0.519758 1_4:-55974308 Msa0171290:three_prime_UTR
ACGTTCCTCTCGCCCGTGCG+TGG 0.520312 1_4:+55980975 None:intergenic
GAAGAATTTACTGATGATGA+TGG 0.523794 1_4:-55979890 Msa0171290:CDS
CAAGGACAGAAAAGGTGCTC+AGG 0.526794 1_4:-55975257 Msa0171290:CDS
CAGTTTGGTGAGGAACTTGA+AGG 0.531731 1_4:-55974641 Msa0171290:CDS
GGTGAAAATGTCGCAGATGT+TGG 0.532231 1_4:-55980731 Msa0171290:CDS
ATATCAACCCTCATTTCAGC+AGG 0.537601 1_4:+55975921 None:intergenic
TCATCAATAGTAACATCCTC+AGG 0.539668 1_4:+55978140 None:intergenic
TGCACCTCAGAGAAAACATA+AGG 0.539692 1_4:+55980671 None:intergenic
GTGTGGTAGCTGTTGGGAAG+AGG 0.542110 1_4:-55978403 Msa0171290:CDS
TGTTCAGTCCTGCTGAAATG+AGG 0.543568 1_4:-55975929 Msa0171290:CDS
AGATAAACCAGAAGAAAAGA+AGG 0.544575 1_4:-55978372 Msa0171290:intron
AGAGGAAGATGCTAAGCGAT+TGG 0.545342 1_4:-55974666 Msa0171290:CDS
GGAAGACAAAATGCTTGGAT+GGG 0.546076 1_4:-55976776 Msa0171290:CDS
CTGGCTAAATTTCAGCAGAA+AGG 0.546970 1_4:-55977004 Msa0171290:intron
TATACTGTTGCATTAGATGA+TGG 0.551989 1_4:-55974263 Msa0171290:three_prime_UTR
TAGCATCTTCCTCTAGATCC+CGG 0.556991 1_4:+55974675 None:intergenic
TGGTAGCGCTTTGCCTTATG+GGG 0.557580 1_4:-55978570 Msa0171290:CDS
GAAGCTTCGGAATTCGGTGG+TGG 0.562716 1_4:-55979965 Msa0171290:CDS
GAGTCTTAGGGCATATAAGC+GGG 0.570694 1_4:-55979849 Msa0171290:CDS
CCAATGGCGTTAATGTTCCA+TGG 0.573495 1_4:+55974177 None:intergenic
AAGAATTTACTGATGATGAT+GGG 0.578013 1_4:-55979889 Msa0171290:CDS
AAGTTGGAAGACAAAATGCT+TGG 0.578949 1_4:-55976781 Msa0171290:CDS
ATGATGATGGGACATATAAG+TGG 0.580341 1_4:-55979877 Msa0171290:CDS
CTAGATCCCGGACTGTGGCA+TGG 0.581437 1_4:+55974687 None:intergenic
TAGAATTGATGAATGGAAGA+TGG 0.583366 1_4:-55975228 Msa0171290:intron
GCATCAGAATCAGTTACTAT+CGG 0.583746 1_4:+55978509 None:intergenic
CCGATCCACGCACGGGCGAG+AGG 0.583798 1_4:-55980980 Msa0171290:five_prime_UTR
TAGCGTGTACCAGTAGGTTG+CGG 0.584652 1_4:+55980821 None:intergenic
TCACAGTTCCTAATAAGTCC+AGG 0.585329 1_4:-55974585 Msa0171290:three_prime_UTR
AAAGGAGATTAAGGAGGCTG+AGG 0.585827 1_4:-55979996 Msa0171290:CDS
TGCATTGGTTACATATCTCA+AGG 0.589361 1_4:-55977187 Msa0171290:intron
ATACACATGTTTATGTCACT+GGG 0.589425 1_4:-55978166 Msa0171290:CDS
AATTGTAGCCGATCCACGCA+CGG 0.590738 1_4:-55980988 None:intergenic
AAGCTGACAAAGACAATAGA+CGG 0.593819 1_4:-55976819 Msa0171290:CDS
GCGTGCATAGAATTGATGAA+TGG 0.595667 1_4:-55975235 Msa0171290:CDS
GGAGAAAATCAACAACAACT+TGG 0.602394 1_4:-55980695 Msa0171290:CDS
GAAGACAAAATGCTTGGATG+GGG 0.605978 1_4:-55976775 Msa0171290:intron
GCGATTGGAGCAGTTTGGTG+AGG 0.606680 1_4:-55974651 Msa0171290:CDS
AGGCAAAGCGCTACCAGACG+TGG 0.611672 1_4:+55978577 None:intergenic
ATTGTAGCCGATCCACGCAC+GGG 0.615763 1_4:-55980987 None:intergenic
GACATCGGAATCTTATCACC+AGG 0.616948 1_4:+55977034 None:intergenic
AATTCAGAAATTGAAGACAA+AGG 0.617573 1_4:+55980485 None:intergenic
TGGATTGCTAGAGCCACTGA+TGG 0.618240 1_4:+55977082 None:intergenic
AGACCTTCAACACCGCCTGA+TGG 0.618261 1_4:-55979917 Msa0171290:CDS
TTATGCTGAGGCTGAAGATG+TGG 0.619425 1_4:-55980038 Msa0171290:CDS
TGGACCTATAGATGCAGTCA+AGG 0.623091 1_4:-55975518 Msa0171290:intron
TTGTTATGTAGTTTATGCTG+AGG 0.623808 1_4:-55980050 Msa0171290:intron
TTCCTCTAGATCCCGGACTG+TGG 0.624191 1_4:+55974682 None:intergenic
TGCCACAGTCCGGGATCTAG+AGG 0.625882 1_4:-55974684 Msa0171290:CDS
ATCAACATAGAGCTTAACAC+GGG 0.630935 1_4:+55977236 None:intergenic
AATTCAAACCAACTGTCAGG+AGG 0.631486 1_4:+55978197 None:intergenic
TATTCGCTACAGTGGCAGCA+AGG 0.632781 1_4:+55980908 None:intergenic
TTATGTCACTGGGTTGCCTG+AGG 0.633023 1_4:-55978156 Msa0171290:CDS
GTTCAGTCCTGCTGAAATGA+GGG 0.634321 1_4:-55975928 Msa0171290:intron
AGAGTCTTAGGGCATATAAG+CGG 0.635019 1_4:-55979850 Msa0171290:CDS
TGTATATCAGGAACCATCAG+TGG 0.638535 1_4:-55977095 Msa0171290:intron
ACAGGGTCAATCAACACCAA+TGG 0.642531 1_4:+55974161 None:intergenic
AAAATGTCGCAGATGTTGGA+TGG 0.645277 1_4:-55980727 Msa0171290:CDS
TAAGTGGGATAAGAGTCTTA+GGG 0.645357 1_4:-55979861 Msa0171290:CDS
ACGTCGTCTCTAGAAACCAC+GGG 0.649405 1_4:-55980956 Msa0171290:five_prime_UTR
TTTCTGCTGAAATTTAGCCA+GGG 0.652648 1_4:+55977006 None:intergenic
CTTCCCAACAGCTACCACAC+TGG 0.656887 1_4:+55978406 None:intergenic
CAGGACTGAACATATAGCGA+AGG 0.659719 1_4:+55975940 None:intergenic
GTATGTGATAATCATCCTCA+GGG 0.661661 1_4:-55975298 Msa0171290:CDS
AACGTCGTCTCTAGAAACCA+CGG 0.666904 1_4:-55980957 Msa0171290:five_prime_UTR
AATGCTAATCTCACATCACA+GGG 0.669904 1_4:+55974144 None:intergenic
TGGGTTTCTATTCGCTACAG+TGG 0.670571 1_4:+55980900 None:intergenic
GGTCTGAAGGAAGAACTGAA+TGG 0.672653 1_4:-55980511 Msa0171290:CDS
GTGGAAGCTTCGGAATTCGG+TGG 0.675726 1_4:-55979968 Msa0171290:CDS
TTAGCCAGGGAGACAGACAT+CGG 0.680304 1_4:+55977019 None:intergenic
ATGGCAAAAGGAGATTAAGG+AGG 0.680476 1_4:-55980002 Msa0171290:CDS
AATTCTTCTTCACCATCAGG+CGG 0.682237 1_4:+55979905 None:intergenic
TATCAACATAGAGCTTAACA+CGG 0.691544 1_4:+55977235 None:intergenic
TGATGATGGGACATATAAGT+GGG 0.715635 1_4:-55979876 Msa0171290:CDS
ATGCAATGAAAGAGTGCCCG+TGG 0.722032 1_4:+55980940 None:intergenic
TTAACCAAAACAACACCCTG+AGG 0.735800 1_4:+55975283 None:intergenic
GTAGTAATCCATGAGCTTCG+GGG 0.736991 1_4:+55974543 None:intergenic
ATACATGCCAGTGAAGACGA+TGG 0.748904 1_4:-55974719 Msa0171290:CDS
TCAACATAGAGCTTAACACG+GGG 0.786913 1_4:+55977237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAATTTATTTGCTTT+TGG - chr1_4:55974986-55975005 Msa0171290:intron 10.0%
!!! TTTAAAATTTATTTGCTTTT+GGG - chr1_4:55974987-55975006 Msa0171290:intron 10.0%
!! TAAAATTAATACTTTATGTT+TGG - chr1_4:55975730-55975749 Msa0171290:intron 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG + chr1_4:55976203-55976222 None:intergenic 10.0%
!! AATCTATATTAAATGAAAAA+GGG + chr1_4:55978437-55978456 None:intergenic 10.0%
!! AAATCTATATTAAATGAAAA+AGG + chr1_4:55978438-55978457 None:intergenic 10.0%
!!! TTTGTTATTATTATTTACTG+TGG - chr1_4:55975013-55975032 Msa0171290:intron 15.0%
!! TATTATGATTAACATAAGAT+AGG - chr1_4:55975352-55975371 Msa0171290:intron 15.0%
!! TTTCAATAAAATAAAACCTA+GGG + chr1_4:55976409-55976428 None:intergenic 15.0%
!!! TGTTTTTCTATTTTTTCTTT+TGG - chr1_4:55976468-55976487 Msa0171290:intron 15.0%
!!! GTTTTTCTATTTTTTCTTTT+GGG - chr1_4:55976469-55976488 Msa0171290:intron 15.0%
!!! GTTCATCTTATTTATATAAA+TGG - chr1_4:55976770-55976789 Msa0171290:intron 15.0%
!!! AAATATAACAGATACTTTTA+AGG + chr1_4:55977195-55977214 None:intergenic 15.0%
!! GTATCTGTTATATTTAATTA+AGG - chr1_4:55977200-55977219 Msa0171290:CDS 15.0%
!!! TGATAATATGCAATATATTT+TGG + chr1_4:55977292-55977311 None:intergenic 15.0%
!! AAAAAAAAAAGTTCATTATG+AGG - chr1_4:55977717-55977736 Msa0171290:intron 15.0%
!! GATATACACAAATATATAAT+TGG + chr1_4:55977997-55978016 None:intergenic 15.0%
!! ATTATATATTTGTGTATATC+AGG - chr1_4:55977997-55978016 Msa0171290:intron 15.0%
!! ATCTATATTAAATGAAAAAG+GGG + chr1_4:55978436-55978455 None:intergenic 15.0%
!!! TTACTTTTAACAATTATAGT+AGG - chr1_4:55979394-55979413 Msa0171290:intron 15.0%
!!! TCAATTACATTAATCTTTTA+AGG + chr1_4:55979628-55979647 None:intergenic 15.0%
!! TTAATTTCAACATAAACACA+AGG + chr1_4:55974495-55974514 None:intergenic 20.0%
!!! ATAAAAGTGTATTTTCTGAT+AGG + chr1_4:55974573-55974592 None:intergenic 20.0%
!!! TATCAGAAAATACACTTTTA+TGG - chr1_4:55974572-55974591 Msa0171290:three_prime_UTR 20.0%
!!! AAAAGTTAAGCTTTAATTCA+TGG + chr1_4:55974946-55974965 None:intergenic 20.0%
!! GGTTATAAAATTGATAGAAA+AGG + chr1_4:55976303-55976322 None:intergenic 20.0%
!!! TTTTATAACCAAAACTTTGA+TGG - chr1_4:55976313-55976332 Msa0171290:intron 20.0%
!! GTTTCAATAAAATAAAACCT+AGG + chr1_4:55976410-55976429 None:intergenic 20.0%
!!! GTTTTATTTTATTGAAACCA+AGG - chr1_4:55976412-55976431 Msa0171290:intron 20.0%
!! TAATGAAATTGTTATGTGAT+AGG - chr1_4:55976498-55976517 Msa0171290:intron 20.0%
!! AAAGATGAGAAAAAATAAGT+GGG + chr1_4:55976802-55976821 None:intergenic 20.0%
!! AAAGGAATATAGGAATAAAA+AGG + chr1_4:55977110-55977129 None:intergenic 20.0%
!!! TTGATTTTACAATTCAACAA+AGG + chr1_4:55977128-55977147 None:intergenic 20.0%
!! AAAATCAAACTATAATGCTT+AGG - chr1_4:55977140-55977159 Msa0171290:intron 20.0%
!! TATAATGCTTAGGTATATAT+CGG - chr1_4:55977150-55977169 Msa0171290:intron 20.0%
!! CAAATCCTCATAAAAATATA+TGG + chr1_4:55977370-55977389 None:intergenic 20.0%
!!! CATATATTTTTATGAGGATT+TGG - chr1_4:55977368-55977387 Msa0171290:intron 20.0%
!!! AGTGTTTTTATAATTGTACT+TGG - chr1_4:55978156-55978175 Msa0171290:CDS 20.0%
!! AAAATCAACTTGAATAAAGT+TGG + chr1_4:55978367-55978386 None:intergenic 20.0%
!!! TTTATTCAAGTTGATTTTTC+AGG - chr1_4:55978369-55978388 Msa0171290:intron 20.0%
!! AGATGCAAAAATTGATATAA+AGG + chr1_4:55978702-55978721 None:intergenic 20.0%
!! AGATTCATATTTCATAAGTT+AGG - chr1_4:55978769-55978788 Msa0171290:intron 20.0%
!!! TATGTTTAGTTTAGAGTTTT+TGG - chr1_4:55979006-55979025 Msa0171290:intron 20.0%
!! ACAAAAAAAATCCTGAAAAT+AGG + chr1_4:55979679-55979698 None:intergenic 20.0%
!!! TATTTTAATAGTACCTAAAC+TGG + chr1_4:55980062-55980081 None:intergenic 20.0%
!! ATGACAAAAGTTAATATTCT+CGG + chr1_4:55980326-55980345 None:intergenic 20.0%
!! GAAAAGAAAAAGGAAATTAT+AGG - chr1_4:55980649-55980668 Msa0171290:intron 20.0%
!! AATTTAATTAGTAGTCGAAT+GGG - chr1_4:55980797-55980816 Msa0171290:intron 20.0%
!! AAAACGATGAATTCTGAAAA+TGG - chr1_4:55974241-55974260 Msa0171290:three_prime_UTR 25.0%
!! ATTTCAGAGCATTTCTTAAA+TGG - chr1_4:55974544-55974563 Msa0171290:three_prime_UTR 25.0%
! AATTCAGAAATTGAAGACAA+AGG + chr1_4:55974622-55974641 None:intergenic 25.0%
! TGTCTTCAATTTCTGAATTA+TGG - chr1_4:55974623-55974642 Msa0171290:exon 25.0%
! GTCTTCAATTTCTGAATTAT+GGG - chr1_4:55974624-55974643 Msa0171290:exon 25.0%
! ATCTAACAGATATGATTGAT+TGG - chr1_4:55974900-55974919 Msa0171290:intron 25.0%
! ATTATTATTTACTGTGGACT+TGG - chr1_4:55975019-55975038 Msa0171290:intron 25.0%
!! AAGAATTTACTGATGATGAT+GGG - chr1_4:55975215-55975234 Msa0171290:intron 25.0%
!!! TTAACTAAATTTTGATGCCT+AGG - chr1_4:55975383-55975402 Msa0171290:intron 25.0%
! GCATAATAGTTAAAACTCTA+AGG + chr1_4:55975439-55975458 None:intergenic 25.0%
! ACCTGATTTATTGAATACAT+TGG - chr1_4:55975515-55975534 Msa0171290:intron 25.0%
! ACCAATGTATTCAATAAATC+AGG + chr1_4:55975519-55975538 None:intergenic 25.0%
!!! TCTTGTTTTAGATTTTGCAT+AGG - chr1_4:55975554-55975573 Msa0171290:CDS 25.0%
!!! AGTTACTAGTTAGTTTGTTA+CGG + chr1_4:55975693-55975712 None:intergenic 25.0%
!!! AGATTTTTTGAGAACTAGTT+TGG + chr1_4:55975953-55975972 None:intergenic 25.0%
!!! AAGTCCGAAACAATTTTTTT+AGG - chr1_4:55976007-55976026 Msa0171290:intron 25.0%
!!! AGTCCGAAACAATTTTTTTA+GGG - chr1_4:55976008-55976027 Msa0171290:intron 25.0%
! ACACCCTAAAAAAATTGTTT+CGG + chr1_4:55976014-55976033 None:intergenic 25.0%
! ATATGGATACATTTCCTTAA+GGG + chr1_4:55976270-55976289 None:intergenic 25.0%
! TTAAGGAAATGTATCCATAT+GGG - chr1_4:55976270-55976289 Msa0171290:intron 25.0%
!! ACTATCTTCAACAATTTTTG+AGG + chr1_4:55976620-55976639 None:intergenic 25.0%
! TAAATAAGATGAACAGATAG+CGG + chr1_4:55976764-55976783 None:intergenic 25.0%
! AAGATGAGAAAAAATAAGTG+GGG + chr1_4:55976801-55976820 None:intergenic 25.0%
! CAAAGATGAGAAAAAATAAG+TGG + chr1_4:55976803-55976822 None:intergenic 25.0%
! CAATGAATATAAGTAGTTTC+AGG + chr1_4:55977018-55977037 None:intergenic 25.0%
! CTGAAACTACTTATATTCAT+TGG - chr1_4:55977016-55977035 Msa0171290:CDS 25.0%
! ATTCATTGGAAAAACTAACA+TGG - chr1_4:55977030-55977049 Msa0171290:CDS 25.0%
! TTCATTGGAAAAACTAACAT+GGG - chr1_4:55977031-55977050 Msa0171290:CDS 25.0%
!! CTCTTTTATAATTCCATACT+TGG + chr1_4:55977084-55977103 None:intergenic 25.0%
! CAAGTATGGAATTATAAAAG+AGG - chr1_4:55977082-55977101 Msa0171290:CDS 25.0%
! ACAATTCAACAAAGGAATAT+AGG + chr1_4:55977120-55977139 None:intergenic 25.0%
!!! TATATCGGTTTTTCATGTTT+AGG - chr1_4:55977165-55977184 Msa0171290:intron 25.0%
! TTAATTAAGGAAAACACAGT+CGG - chr1_4:55977213-55977232 Msa0171290:CDS 25.0%
! AAAGTATATTGCCAAAAGTA+TGG - chr1_4:55977242-55977261 Msa0171290:CDS 25.0%
!! GAAATGTTAATCCATACTTT+TGG + chr1_4:55977256-55977275 None:intergenic 25.0%
!!! ATCACATGAAAGCATTTAAA+AGG + chr1_4:55977322-55977341 None:intergenic 25.0%
!!! AATGGCCATATATTTTTATG+AGG - chr1_4:55977362-55977381 Msa0171290:intron 25.0%
! TATAATACACCAAAAATGGT+GGG + chr1_4:55977567-55977586 None:intergenic 25.0%
! AAAAAAAGTTCATTATGAGG+TGG - chr1_4:55977720-55977739 Msa0171290:intron 25.0%
!!! AACTAAACTATGATTTTGAC+AGG + chr1_4:55978196-55978215 None:intergenic 25.0%
! GAAAAAGAAAACGAAAAAGT+TGG - chr1_4:55978307-55978326 Msa0171290:intron 25.0%
! GCTAAAATTAAGATGAATTG+GGG + chr1_4:55978407-55978426 None:intergenic 25.0%
! GGCTAAAATTAAGATGAATT+GGG + chr1_4:55978408-55978427 None:intergenic 25.0%
! AGGCTAAAATTAAGATGAAT+TGG + chr1_4:55978409-55978428 None:intergenic 25.0%
! TTAAATGAAAAAGGGGAATT+AGG + chr1_4:55978429-55978448 None:intergenic 25.0%
! TTGGAAAAATATCTACAAGA+AGG + chr1_4:55978462-55978481 None:intergenic 25.0%
!! TATTTTTCCAATTTACCAGA+TGG - chr1_4:55978471-55978490 Msa0171290:CDS 25.0%
! ACATTTCCATAAATACTGAT+AGG - chr1_4:55978613-55978632 Msa0171290:intron 25.0%
!! TCTTTTCCTATCAGTATTTA+TGG + chr1_4:55978622-55978641 None:intergenic 25.0%
! AACTAAACATAAATCTGAGA+TGG + chr1_4:55978997-55979016 None:intergenic 25.0%
!!! TTTAGAGTTTTTGGATGATT+TGG - chr1_4:55979015-55979034 Msa0171290:intron 25.0%
!! CTAATGTGATTTTCATTGTA+TGG - chr1_4:55979093-55979112 Msa0171290:intron 25.0%
! TATAACCAAATCCAAAATGA+TGG + chr1_4:55979280-55979299 None:intergenic 25.0%
! TAATATTGCTTAATCTGTTC+AGG - chr1_4:55979505-55979524 Msa0171290:intron 25.0%
! AAAATCCTGAAAATAGGATA+TGG + chr1_4:55979673-55979692 None:intergenic 25.0%
!!! TGTTGTTTTGGTTAAATTCA+AGG - chr1_4:55979829-55979848 Msa0171290:intron 25.0%
! ATAATGACTAAAACAAGATC+TGG + chr1_4:55980035-55980054 None:intergenic 25.0%
!!! AATAGTAACGTAACTTGTTT+TGG - chr1_4:55980078-55980097 Msa0171290:intron 25.0%
!! AAACAAACATTTTTCCTTGT+GGG - chr1_4:55980165-55980184 Msa0171290:intron 25.0%
! TTACAGTGTTACAATGAAAT+TGG - chr1_4:55980226-55980245 Msa0171290:intron 25.0%
! TGACAAAAGTTAATATTCTC+GGG + chr1_4:55980325-55980344 None:intergenic 25.0%
!!! AACTTTTGTCATACTTTTTC+TGG - chr1_4:55980334-55980353 Msa0171290:intron 25.0%
!!! CTTTTTCTGGTTTATTTATC+AGG - chr1_4:55980347-55980366 Msa0171290:intron 25.0%
!! TATTAGTTCTCTTGTATCAT+TGG - chr1_4:55980627-55980646 Msa0171290:intron 25.0%
! TGTATCATTGGAAAAGAAAA+AGG - chr1_4:55980639-55980658 Msa0171290:intron 25.0%
! AAGAAAAAGGAAATTATAGG+AGG - chr1_4:55980652-55980671 Msa0171290:intron 25.0%
! TTTGACTACCATATCTTATT+TGG - chr1_4:55980689-55980708 Msa0171290:CDS 25.0%
!! GCAATTTTCCAAATAAGATA+TGG + chr1_4:55980700-55980719 None:intergenic 25.0%
! GTGTTATAATACTCATGATT+TGG + chr1_4:55980744-55980763 None:intergenic 25.0%
! GAATTTAATTAGTAGTCGAA+TGG - chr1_4:55980796-55980815 Msa0171290:intron 25.0%
! TTCAGAATTCATCGTTTTCT+TGG + chr1_4:55974239-55974258 None:intergenic 30.0%
AGTTAAAACAGAAATTGCTG+CGG + chr1_4:55974339-55974358 None:intergenic 30.0%
!!! CATAAACACAAGGTTTTGTT+TGG + chr1_4:55974485-55974504 None:intergenic 30.0%
! AATACACTTTTATGGTCTGA+AGG - chr1_4:55974580-55974599 Msa0171290:three_prime_UTR 30.0%
! GATTTGAAATCTGTATCTTG+AGG - chr1_4:55974799-55974818 Msa0171290:intron 30.0%
TTGTTATGTAGTTTATGCTG+AGG - chr1_4:55975054-55975073 Msa0171290:intron 30.0%
AAAATGGCAAAAGGAGATTA+AGG - chr1_4:55975099-55975118 Msa0171290:intron 30.0%
! GAAGAATTTACTGATGATGA+TGG - chr1_4:55975214-55975233 Msa0171290:intron 30.0%
!! AAATTTTGATGCCTAGGATT+TGG - chr1_4:55975389-55975408 Msa0171290:intron 30.0%
!! AATTTTGATGCCTAGGATTT+GGG - chr1_4:55975390-55975409 Msa0171290:intron 30.0%
!!! TACATTGGTTTTGAAATGAC+AGG - chr1_4:55975530-55975549 Msa0171290:CDS 30.0%
!!! AGGGAAATTTTTAGCAATAG+GGG + chr1_4:55975666-55975685 None:intergenic 30.0%
!!! GAGGGAAATTTTTAGCAATA+GGG + chr1_4:55975667-55975686 None:intergenic 30.0%
!!! TCATTTTTGTCTGCTGTTTT+TGG - chr1_4:55975871-55975890 Msa0171290:intron 30.0%
CAAAAAGACACTGCTATAAA+GGG - chr1_4:55975977-55975996 Msa0171290:CDS 30.0%
!!! CAATTTTTTTAGGGTGTGTT+TGG - chr1_4:55976017-55976036 Msa0171290:intron 30.0%
CATATGGATACATTTCCTTA+AGG + chr1_4:55976271-55976290 None:intergenic 30.0%
CTTAAGGAAATGTATCCATA+TGG - chr1_4:55976269-55976288 Msa0171290:intron 30.0%
GAAAAGGAAATATTCCCATA+TGG + chr1_4:55976287-55976306 None:intergenic 30.0%
! TGCTTTATCCATCAAAGTTT+TGG + chr1_4:55976324-55976343 None:intergenic 30.0%
GTATTAATCTCAATTTCCCT+AGG - chr1_4:55976390-55976409 Msa0171290:intron 30.0%
TGAAATTGTTATGTGATAGG+AGG - chr1_4:55976501-55976520 Msa0171290:intron 30.0%
AACTTCCTCTTCTTTCAAAA+AGG + chr1_4:55976572-55976591 None:intergenic 30.0%
!! TTCAGTTGTTTCTTCCTTTA+TGG + chr1_4:55976668-55976687 None:intergenic 30.0%
AGATAAACCAGAAGAAAAGA+AGG - chr1_4:55976732-55976751 Msa0171290:intron 30.0%
! TTAGAAATGAGTACCTCTTT+TGG - chr1_4:55976833-55976852 Msa0171290:CDS 30.0%
! TAGAAATGAGTACCTCTTTT+GGG - chr1_4:55976834-55976853 Msa0171290:CDS 30.0%
! TGTCATTTATTTCCCAAAAG+AGG + chr1_4:55976849-55976868 None:intergenic 30.0%
TTTAATTCAAACCAACTGTC+AGG + chr1_4:55976913-55976932 None:intergenic 30.0%
!! TGACAGTTGGTTTGAATTAA+AGG - chr1_4:55976912-55976931 Msa0171290:intron 30.0%
AATACACATGTTTATGTCAC+TGG - chr1_4:55976937-55976956 Msa0171290:intron 30.0%
ATACACATGTTTATGTCACT+GGG - chr1_4:55976938-55976957 Msa0171290:intron 30.0%
TGGATTAACATTTCTACACA+TGG - chr1_4:55977262-55977281 Msa0171290:intron 30.0%
!!! GTGTTATTTATTTTCGGTCA+GGG + chr1_4:55977434-55977453 None:intergenic 30.0%
!!! TGTGTTATTTATTTTCGGTC+AGG + chr1_4:55977435-55977454 None:intergenic 30.0%
GACCGAAAATAAATAACACA+AGG - chr1_4:55977435-55977454 Msa0171290:intron 30.0%
!!! GGCCTTGTGTTATTTATTTT+CGG + chr1_4:55977440-55977459 None:intergenic 30.0%
TGTCTTGCCAAAGATTAAAA+GGG - chr1_4:55977493-55977512 Msa0171290:intron 30.0%
GTATAATACACCAAAAATGG+TGG + chr1_4:55977568-55977587 None:intergenic 30.0%
TGCGTATAATACACCAAAAA+TGG + chr1_4:55977571-55977590 None:intergenic 30.0%
TATCAACATAGAGCTTAACA+CGG + chr1_4:55977872-55977891 None:intergenic 30.0%
TAAAGAGACAGGAAGAAAAA+AGG - chr1_4:55977890-55977909 Msa0171290:intron 30.0%
AAAGAGACAGGAAGAAAAAA+GGG - chr1_4:55977891-55977910 Msa0171290:intron 30.0%
!! TAAACTATGATTTTGACAGG+TGG + chr1_4:55978193-55978212 None:intergenic 30.0%
TATTTAAAGAAAGCTCCATC+AGG + chr1_4:55978239-55978258 None:intergenic 30.0%
ATTTACACCATCTGGTAAAT+TGG + chr1_4:55978481-55978500 None:intergenic 30.0%
AATTTACCAGATGGTGTAAA+TGG - chr1_4:55978480-55978499 Msa0171290:CDS 30.0%
ATGGAAATGTTTATCGAAAC+TGG + chr1_4:55978603-55978622 None:intergenic 30.0%
ACTTATGAAAAAGCTAGATG+AGG + chr1_4:55978743-55978762 None:intergenic 30.0%
!! TTGAATTAGCTTTGAGCTTA+TGG + chr1_4:55978825-55978844 None:intergenic 30.0%
GCTCAAAGCTAATTCAAATT+TGG - chr1_4:55978828-55978847 Msa0171290:intron 30.0%
ACTAGAAGAAGATGTTAAAG+AGG - chr1_4:55979550-55979569 Msa0171290:intron 30.0%
TGAAAATAGGATATGGTTAC+AGG + chr1_4:55979666-55979685 None:intergenic 30.0%
! TGTAACCATATCCTATTTTC+AGG - chr1_4:55979665-55979684 Msa0171290:intron 30.0%
GAAAGTAGTATCACTGTTAT+TGG + chr1_4:55979716-55979735 None:intergenic 30.0%
GTTAAATTCAAGGACAGAAA+AGG - chr1_4:55979839-55979858 Msa0171290:intron 30.0%
TAGAATTGATGAATGGAAGA+TGG - chr1_4:55979876-55979895 Msa0171290:CDS 30.0%
AAGAAGAAAACGGATAAACA+AGG + chr1_4:55979911-55979930 None:intergenic 30.0%
AGTCATTATTCAACCAGTTT+AGG - chr1_4:55980046-55980065 Msa0171290:intron 30.0%
! GAAACAAACATTTTTCCTTG+TGG - chr1_4:55980164-55980183 Msa0171290:intron 30.0%
TCGGGATATGTAAAAATGAA+AGG + chr1_4:55980307-55980326 None:intergenic 30.0%
! TCTGGTTTATTTATCAGGTT+TGG - chr1_4:55980352-55980371 Msa0171290:intron 30.0%
ATTTGGAAAATTGCGACATT+CGG - chr1_4:55980706-55980725 Msa0171290:CDS 30.0%
TATACTGTTGCATTAGATGA+TGG - chr1_4:55980841-55980860 Msa0171290:CDS 30.0%
! GTTTTCTTGGAGCAATTTCT+GGG + chr1_4:55974226-55974245 None:intergenic 35.0%
GGAGAAAATCAACAACAACT+TGG - chr1_4:55974409-55974428 Msa0171290:three_prime_UTR 35.0%
GATTTCAAATCACCTCATGA+CGG + chr1_4:55974790-55974809 None:intergenic 35.0%
AAAATTCTTACCACTGAGCT+AGG - chr1_4:55974831-55974850 Msa0171290:intron 35.0%
ATGTGGACGAGTTTGAAAAA+TGG - chr1_4:55975083-55975102 Msa0171290:intron 35.0%
CGAGTTTGAAAAATGGCAAA+AGG - chr1_4:55975090-55975109 Msa0171290:intron 35.0%
GTAAATTCTTCTTCACCATC+AGG + chr1_4:55975205-55975224 None:intergenic 35.0%
!! ATGATGATGGGACATATAAG+TGG - chr1_4:55975227-55975246 Msa0171290:intron 35.0%
!! TGATGATGGGACATATAAGT+GGG - chr1_4:55975228-55975247 Msa0171290:intron 35.0%
ATAAGTGGGATAAGAGTCTT+AGG - chr1_4:55975242-55975261 Msa0171290:CDS 35.0%
TAAGTGGGATAAGAGTCTTA+GGG - chr1_4:55975243-55975262 Msa0171290:CDS 35.0%
!! ATTTTGATGCCTAGGATTTG+GGG - chr1_4:55975391-55975410 Msa0171290:intron 35.0%
TATTATGCTCGAAGCTTATG+TGG - chr1_4:55975451-55975470 Msa0171290:intron 35.0%
! AGATTTTGCATAGGTCACAT+AGG - chr1_4:55975563-55975582 Msa0171290:CDS 35.0%
!!! GGAGGGAAATTTTTAGCAAT+AGG + chr1_4:55975668-55975687 None:intergenic 35.0%
!! ACTAGTTAGTTTGTTACGGA+GGG + chr1_4:55975689-55975708 None:intergenic 35.0%
!! TACTAGTTAGTTTGTTACGG+AGG + chr1_4:55975690-55975709 None:intergenic 35.0%
TGTTTGGCATCTTGTCAAAT+TGG - chr1_4:55975746-55975765 Msa0171290:intron 35.0%
TAAAGCACAGACAGTACATT+TGG - chr1_4:55975783-55975802 Msa0171290:intron 35.0%
! CCTTTATAGCAGTGTCTTTT+TGG + chr1_4:55975979-55975998 None:intergenic 35.0%
CCAAAAAGACACTGCTATAA+AGG - chr1_4:55975976-55975995 Msa0171290:CDS 35.0%
ATTCAGAGAATCAACAACCT+TGG + chr1_4:55976432-55976451 None:intergenic 35.0%
AATTGTTATGTGATAGGAGG+AGG - chr1_4:55976504-55976523 Msa0171290:intron 35.0%
!! GATGACCTTTTTGAAAGAAG+AGG - chr1_4:55976564-55976583 Msa0171290:intron 35.0%
GCATCAGAATCAGTTACTAT+CGG + chr1_4:55976598-55976617 None:intergenic 35.0%
! TGTTTCTGCAACTTCCATAA+AGG - chr1_4:55976651-55976670 Msa0171290:intron 35.0%
TGAAGCAAAAAATACCAGTG+TGG - chr1_4:55976684-55976703 Msa0171290:intron 35.0%
TCATCAATAGTAACATCCTC+AGG + chr1_4:55976967-55976986 None:intergenic 35.0%
ACTAACATGGGCAATATTGT+AGG - chr1_4:55977043-55977062 Msa0171290:CDS 35.0%
! GTGGAAACATTTTCCAAGTA+TGG - chr1_4:55977068-55977087 Msa0171290:CDS 35.0%
! AATCTTTGGCAAGACACTTT+TGG + chr1_4:55977489-55977508 None:intergenic 35.0%
GTGTCTTGCCAAAGATTAAA+AGG - chr1_4:55977492-55977511 Msa0171290:intron 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr1_4:55977595-55977614 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr1_4:55977595-55977614 Msa0171290:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + chr1_4:55977600-55977619 None:intergenic 35.0%
!!! GAAAACATCAGACTAGCTTT+TGG - chr1_4:55977761-55977780 Msa0171290:intron 35.0%
CATGCAATTCATATGAAGCT+GGG + chr1_4:55977804-55977823 None:intergenic 35.0%
TCATGCAATTCATATGAAGC+TGG + chr1_4:55977805-55977824 None:intergenic 35.0%
! GAACTGATTCTGTTTGAAAC+AGG - chr1_4:55977827-55977846 Msa0171290:intron 35.0%
ATCAACATAGAGCTTAACAC+GGG + chr1_4:55977871-55977890 None:intergenic 35.0%
! CTCTATGTTGATAAAGAGAC+AGG - chr1_4:55977879-55977898 Msa0171290:intron 35.0%
AAGAAAAAAGGGAGATGCAT+TGG - chr1_4:55977902-55977921 Msa0171290:intron 35.0%
!! TGCATTGGTTACATATCTCA+AGG - chr1_4:55977917-55977936 Msa0171290:intron 35.0%
AATTCAAAGCTACGTATCAC+AGG + chr1_4:55977963-55977982 None:intergenic 35.0%
!! TACGTAGCTTTGAATTTGTC+AGG - chr1_4:55977967-55977986 Msa0171290:intron 35.0%
!! ACGTAGCTTTGAATTTGTCA+GGG - chr1_4:55977968-55977987 Msa0171290:intron 35.0%
TTTCTGCTGAAATTTAGCCA+GGG + chr1_4:55978101-55978120 None:intergenic 35.0%
GGAGCTTTCTTTAAATATGC+AGG - chr1_4:55978242-55978261 Msa0171290:intron 35.0%
AAGCTGACAAAGACAATAGA+CGG - chr1_4:55978285-55978304 Msa0171290:intron 35.0%
AAGTTGGAAGACAAAATGCT+TGG - chr1_4:55978323-55978342 Msa0171290:intron 35.0%
ATTGATCCATTTACACCATC+TGG + chr1_4:55978489-55978508 None:intergenic 35.0%
CAGAAGCAAATTGGAAAACA+TGG + chr1_4:55978925-55978944 None:intergenic 35.0%
!! CATGTTTTCCAATTTGCTTC+TGG - chr1_4:55978923-55978942 Msa0171290:intron 35.0%
! TTTGGATGATTTGGAGTTTC+TGG - chr1_4:55979024-55979043 Msa0171290:intron 35.0%
! TGATTTTCATTGTATGGCAC+AGG - chr1_4:55979099-55979118 Msa0171290:intron 35.0%
CTCTCAGTATTGCAATTTGT+TGG - chr1_4:55979456-55979475 Msa0171290:intron 35.0%
ACTGTTATTGGTACAGGTAT+GGG + chr1_4:55979704-55979723 None:intergenic 35.0%
AGTATCACTGTTATTGGTAC+AGG + chr1_4:55979710-55979729 None:intergenic 35.0%
GTATGTGATAATCATCCTCA+GGG - chr1_4:55979806-55979825 Msa0171290:intron 35.0%
! GAAAGTGCAGAAGAAGAAAA+CGG + chr1_4:55979921-55979940 None:intergenic 35.0%
! GTTTTCTTCTTCTGCACTTT+CGG - chr1_4:55979920-55979939 Msa0171290:CDS 35.0%
ACTAAAACAAGATCTGGAGA+AGG + chr1_4:55980029-55980048 None:intergenic 35.0%
!!! AAAACCTTTGAGCTTTTTCG+AGG - chr1_4:55980107-55980126 Msa0171290:intron 35.0%
!!! AAACCTTTGAGCTTTTTCGA+GGG - chr1_4:55980108-55980127 Msa0171290:intron 35.0%
!! GTTTGGCATTGATATCAGTA+AGG - chr1_4:55980130-55980149 Msa0171290:intron 35.0%
! TTTCCTTGTGGGTTAAGTAT+AGG - chr1_4:55980176-55980195 Msa0171290:intron 35.0%
! TTCCTTGTGGGTTAAGTATA+GGG - chr1_4:55980177-55980196 Msa0171290:intron 35.0%
GGTTTATTTATCAGGTTTGG+TGG - chr1_4:55980355-55980374 Msa0171290:intron 35.0%
AATTAAACCATCGTCTTCAC+TGG + chr1_4:55980395-55980414 None:intergenic 35.0%
AACTTGAAGGTGAATGAGTT+AGG - chr1_4:55980476-55980495 Msa0171290:CDS 35.0%
CTTATTAGGAACTGTGAATC+TGG + chr1_4:55980516-55980535 None:intergenic 35.0%
AATGCTAATCTCACATCACA+GGG + chr1_4:55980963-55980982 None:intergenic 35.0%
! CGTTTTCTTGGAGCAATTTC+TGG + chr1_4:55974227-55974246 None:intergenic 40.0%
!! TTTAACTGAGCTTGTTACGC+AGG - chr1_4:55974352-55974371 Msa0171290:three_prime_UTR 40.0%
AAAATGTCGCAGATGTTGGA+TGG - chr1_4:55974377-55974396 Msa0171290:three_prime_UTR 40.0%
! TGGTCCTTATGTTTTCTCTG+AGG - chr1_4:55974429-55974448 Msa0171290:three_prime_UTR 40.0%
TGCACCTCAGAGAAAACATA+AGG + chr1_4:55974436-55974455 None:intergenic 40.0%
!!! TATGTTTTCTCTGAGGTGCA+AGG - chr1_4:55974436-55974455 Msa0171290:three_prime_UTR 40.0%
AAGACGAATTGGGTCTTTGA+GGG + chr1_4:55974660-55974679 None:intergenic 40.0%
GACGGTTGTAAAATGGTCAT+TGG + chr1_4:55974772-55974791 None:intergenic 40.0%
! ACCATTTTACAACCGTCATG+AGG - chr1_4:55974775-55974794 Msa0171290:intron 40.0%
ACCTCATGACGGTTGTAAAA+TGG + chr1_4:55974779-55974798 None:intergenic 40.0%
ATGGCAAAAGGAGATTAAGG+AGG - chr1_4:55975102-55975121 Msa0171290:intron 40.0%
AATTCTTCTTCACCATCAGG+CGG + chr1_4:55975202-55975221 None:intergenic 40.0%
AGAGTCTTAGGGCATATAAG+CGG - chr1_4:55975254-55975273 Msa0171290:CDS 40.0%
TAAACCTAACCCCAAATCCT+AGG + chr1_4:55975403-55975422 None:intergenic 40.0%
TCGAAGCTTATGTGGTTCAT+AGG - chr1_4:55975459-55975478 Msa0171290:intron 40.0%
CGAAGCTTATGTGGTTCATA+GGG - chr1_4:55975460-55975479 Msa0171290:intron 40.0%
! ACACTGAAGGTGTATTAAGG+TGG - chr1_4:55975621-55975640 Msa0171290:intron 40.0%
! TGAACCTTCTGTCTTGTTGA+TGG - chr1_4:55975826-55975845 Msa0171290:intron 40.0%
! GAACCTTCTGTCTTGTTGAT+GGG - chr1_4:55975827-55975846 Msa0171290:intron 40.0%
AATCCCATCAACAAGACAGA+AGG + chr1_4:55975833-55975852 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - chr1_4:55976024-55976043 Msa0171290:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr1_4:55976025-55976044 Msa0171290:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr1_4:55976031-55976050 Msa0171290:intron 40.0%
GTGTTTGGATTGAGGGTTTA+GGG - chr1_4:55976032-55976051 Msa0171290:intron 40.0%
TGTTTGGATTGAGGGTTTAG+GGG - chr1_4:55976033-55976052 Msa0171290:intron 40.0%
! CATTTCCTTAAGGGTGTGTT+TGG + chr1_4:55976261-55976280 None:intergenic 40.0%
! ATAAGATGAACAGATAGCGG+CGG + chr1_4:55976761-55976780 None:intergenic 40.0%
TATTGACCTCATTCTGTTCC+AGG - chr1_4:55976873-55976892 Msa0171290:intron 40.0%
CTAATAAACCTCCTGACAGT+TGG - chr1_4:55976899-55976918 Msa0171290:intron 40.0%
AATTCAAACCAACTGTCAGG+AGG + chr1_4:55976910-55976929 None:intergenic 40.0%
ATGGGCAATATTGTAGGTTG+TGG - chr1_4:55977049-55977068 Msa0171290:CDS 40.0%
!! GCTAGTTCTAAAGAGTTGCT+TGG + chr1_4:55977461-55977480 None:intergenic 40.0%
! CAGGTTGCCCTTTTAATCTT+TGG + chr1_4:55977503-55977522 None:intergenic 40.0%
CAAAGATTAAAAGGGCAACC+TGG - chr1_4:55977501-55977520 Msa0171290:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr1_4:55977601-55977620 None:intergenic 40.0%
!! TTACACAAGAGGCTGTTTTC+AGG - chr1_4:55977606-55977625 Msa0171290:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr1_4:55977646-55977665 None:intergenic 40.0%
TTACCCTTCTGTCTTGCAAA+AGG - chr1_4:55977685-55977704 Msa0171290:intron 40.0%
! CAACCTTTTGCAAGACAGAA+GGG + chr1_4:55977691-55977710 None:intergenic 40.0%
! ACAACCTTTTGCAAGACAGA+AGG + chr1_4:55977692-55977711 None:intergenic 40.0%
!!! AACATCAGACTAGCTTTTGG+AGG - chr1_4:55977764-55977783 Msa0171290:intron 40.0%
!!! AGACTAGCTTTTGGAGGTTT+TGG - chr1_4:55977770-55977789 Msa0171290:intron 40.0%
TCAACATAGAGCTTAACACG+GGG + chr1_4:55977870-55977889 None:intergenic 40.0%
TGTATATCAGGAACCATCAG+TGG - chr1_4:55978009-55978028 Msa0171290:intron 40.0%
! CTAGCAATCCAACTTTTGGA+TGG - chr1_4:55978034-55978053 Msa0171290:CDS 40.0%
CTTTCTGCTGAAATTTAGCC+AGG + chr1_4:55978102-55978121 None:intergenic 40.0%
TAGTTAACTATCACTCCTGC+TGG - chr1_4:55978211-55978230 Msa0171290:CDS 40.0%
! ATTGTCTTTGTCAGCTTGCT+TGG + chr1_4:55978282-55978301 None:intergenic 40.0%
TGGAAGACAAAATGCTTGGA+TGG - chr1_4:55978327-55978346 Msa0171290:intron 40.0%
GGAAGACAAAATGCTTGGAT+GGG - chr1_4:55978328-55978347 Msa0171290:intron 40.0%
GAAGACAAAATGCTTGGATG+GGG - chr1_4:55978329-55978348 Msa0171290:intron 40.0%
TCAGTGAACTCAAGGATCAA+CGG + chr1_4:55978526-55978545 None:intergenic 40.0%
AAATGCACTCAGTGAACTCA+AGG + chr1_4:55978534-55978553 None:intergenic 40.0%
! TGAGTTCACTGAGTGCATTT+TGG - chr1_4:55978534-55978553 Msa0171290:CDS 40.0%
! TTTTCATTGTATGGCACAGG+TGG - chr1_4:55979102-55979121 Msa0171290:intron 40.0%
ATATCAACCCTCATTTCAGC+AGG + chr1_4:55979186-55979205 None:intergenic 40.0%
! ACCATAGCTGTCCATCATTT+TGG - chr1_4:55979266-55979285 Msa0171290:intron 40.0%
!! TCCAAAATGATGGACAGCTA+TGG + chr1_4:55979270-55979289 None:intergenic 40.0%
! GCTGTCCATCATTTTGGATT+TGG - chr1_4:55979272-55979291 Msa0171290:intron 40.0%
ACTACCTTGACTGCATCTAT+AGG + chr1_4:55979593-55979612 None:intergenic 40.0%
CTGTTATTGGTACAGGTATG+GGG + chr1_4:55979703-55979722 None:intergenic 40.0%
CACTGTTATTGGTACAGGTA+TGG + chr1_4:55979705-55979724 None:intergenic 40.0%
GTCAAACACAACAGAAACAC+AGG + chr1_4:55979749-55979768 None:intergenic 40.0%
CAGCAAACATGGAAATACAG+AGG + chr1_4:55979783-55979802 None:intergenic 40.0%
! TGTATTTCCATGTTTGCTGC+AGG - chr1_4:55979784-55979803 Msa0171290:intron 40.0%
GGTATGTGATAATCATCCTC+AGG - chr1_4:55979805-55979824 Msa0171290:intron 40.0%
TTAACCAAAACAACACCCTG+AGG + chr1_4:55979824-55979843 None:intergenic 40.0%
GCGTGCATAGAATTGATGAA+TGG - chr1_4:55979869-55979888 Msa0171290:CDS 40.0%
! GCTATGCTGCTTATATGACA+AGG + chr1_4:55979976-55979995 None:intergenic 40.0%
TATAAGCAGCATAGCCTACT+TGG - chr1_4:55979981-55980000 Msa0171290:CDS 40.0%
!!! GCATGCTGACTTTCTTTTGT+TGG - chr1_4:55980003-55980022 Msa0171290:CDS 40.0%
AAACCCTCGAAAAAGCTCAA+AGG + chr1_4:55980114-55980133 None:intergenic 40.0%
!!! TTTGAGCTTTTTCGAGGGTT+TGG - chr1_4:55980113-55980132 Msa0171290:intron 40.0%
ATCCCTATACTTAACCCACA+AGG + chr1_4:55980182-55980201 None:intergenic 40.0%
TAATTAACCATGCCACAGTC+CGG - chr1_4:55980410-55980429 Msa0171290:intron 40.0%
TCACAGTTCCTAATAAGTCC+AGG - chr1_4:55980519-55980538 Msa0171290:CDS 40.0%
TTTCAAGGCCTGGACTTATT+AGG + chr1_4:55980530-55980549 None:intergenic 40.0%
TCTTGCAATATTTCAAGGCC+TGG + chr1_4:55980540-55980559 None:intergenic 40.0%
GGGGTTCTTGCAATATTTCA+AGG + chr1_4:55980545-55980564 None:intergenic 40.0%
ACGTAGTAATCCATGAGCTT+CGG + chr1_4:55980566-55980585 None:intergenic 40.0%
AAAAAAGCTGCAACTTGCCA+TGG - chr1_4:55980910-55980929 Msa0171290:five_prime_UTR 40.0%
GAATGCTAATCTCACATCAC+AGG + chr1_4:55980964-55980983 None:intergenic 40.0%
! AACGTCGTCTCTAGAAACCA+CGG - chr1_4:55974147-55974166 Msa0171290:three_prime_UTR 45.0%
TGGGTTTCTATTCGCTACAG+TGG + chr1_4:55974207-55974226 None:intergenic 45.0%
AGAAGTTAGCGTGTACCAGT+AGG + chr1_4:55974292-55974311 None:intergenic 45.0%
! GCTGCGGATTTGAGATGAAA+AGG + chr1_4:55974323-55974342 None:intergenic 45.0%
GGTGAAAATGTCGCAGATGT+TGG - chr1_4:55974373-55974392 Msa0171290:three_prime_UTR 45.0%
GATGTTGGATGGTACGTTCT+TGG - chr1_4:55974388-55974407 Msa0171290:three_prime_UTR 45.0%
GGTCTGAAGGAAGAACTGAA+TGG - chr1_4:55974593-55974612 Msa0171290:three_prime_UTR 45.0%
GAAGACGAATTGGGTCTTTG+AGG + chr1_4:55974661-55974680 None:intergenic 45.0%
CCTGCAGTTGAAGACGAATT+GGG + chr1_4:55974670-55974689 None:intergenic 45.0%
ACCTGCAGTTGAAGACGAAT+TGG + chr1_4:55974671-55974690 None:intergenic 45.0%
TTATGCTGAGGCTGAAGATG+TGG - chr1_4:55975066-55975085 Msa0171290:intron 45.0%
AAAGGAGATTAAGGAGGCTG+AGG - chr1_4:55975108-55975127 Msa0171290:intron 45.0%
CAAGTGGAAGCTTCGGAATT+CGG - chr1_4:55975133-55975152 Msa0171290:intron 45.0%
GAGTCTTAGGGCATATAAGC+GGG - chr1_4:55975255-55975274 Msa0171290:CDS 45.0%
! GGGACACTGAAGGTGTATTA+AGG - chr1_4:55975618-55975637 Msa0171290:intron 45.0%
!! GTTAGTTTGTTACGGAGGGA+GGG + chr1_4:55975685-55975704 None:intergenic 45.0%
!! AGTTAGTTTGTTACGGAGGG+AGG + chr1_4:55975686-55975705 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+GGG - chr1_4:55976034-55976053 Msa0171290:intron 45.0%
TTTGGATTGAGGGTTTAGGG+GGG - chr1_4:55976035-55976054 Msa0171290:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr1_4:55976243-55976262 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr1_4:55976247-55976266 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG + chr1_4:55976253-55976272 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG + chr1_4:55976254-55976273 None:intergenic 45.0%
TCCATCCAAACACACCCTTA+AGG - chr1_4:55976253-55976272 Msa0171290:intron 45.0%
! TCCTTAAGGGTGTGTTTGGA+TGG + chr1_4:55976257-55976276 None:intergenic 45.0%
GTCATCTCTTCAACCCCATA+AGG + chr1_4:55976550-55976569 None:intergenic 45.0%
AATACCAGTGTGGTAGCTGT+TGG - chr1_4:55976694-55976713 Msa0171290:intron 45.0%
ATACCAGTGTGGTAGCTGTT+GGG - chr1_4:55976695-55976714 Msa0171290:intron 45.0%
TAGCTTCCTGGAACAGAATG+AGG + chr1_4:55976882-55976901 None:intergenic 45.0%
! CAGGAGGTTTATTAGCTTCC+TGG + chr1_4:55976894-55976913 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr1_4:55977639-55977658 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr1_4:55977640-55977659 None:intergenic 45.0%
!! GGCTCTAGCAATCCAACTTT+TGG - chr1_4:55978030-55978049 Msa0171290:CDS 45.0%
! TTTTGGATGGTGCGCCTTTT+CGG - chr1_4:55978047-55978066 Msa0171290:intron 45.0%
ATCTTATCACCAGGCCGAAA+AGG + chr1_4:55978064-55978083 None:intergenic 45.0%
GACATCGGAATCTTATCACC+AGG + chr1_4:55978073-55978092 None:intergenic 45.0%
ACTCAAGGATCAACGGACAT+GGG + chr1_4:55978519-55978538 None:intergenic 45.0%
AACTCAAGGATCAACGGACA+TGG + chr1_4:55978520-55978539 None:intergenic 45.0%
CACACTCACCAGAAGCAAAT+TGG + chr1_4:55978934-55978953 None:intergenic 45.0%
! TGAAGCAAGAAAGCATGCTG+TGG - chr1_4:55978952-55978971 Msa0171290:intron 45.0%
TAGCGAAGGACAACAGTTGT+TGG + chr1_4:55979153-55979172 None:intergenic 45.0%
CAGGACTGAACATATAGCGA+AGG + chr1_4:55979167-55979186 None:intergenic 45.0%
TGTTCAGTCCTGCTGAAATG+AGG - chr1_4:55979175-55979194 Msa0171290:intron 45.0%
GTTCAGTCCTGCTGAAATGA+GGG - chr1_4:55979176-55979195 Msa0171290:intron 45.0%
AAAGAGGAATGCACGAAGCT+TGG - chr1_4:55979566-55979585 Msa0171290:intron 45.0%
TGGACCTATAGATGCAGTCA+AGG - chr1_4:55979586-55979605 Msa0171290:intron 45.0%
TCACATACCTGCAGCAAACA+TGG + chr1_4:55979794-55979813 None:intergenic 45.0%
!!! TCATCCTCAGGGTGTTGTTT+TGG - chr1_4:55979817-55979836 Msa0171290:intron 45.0%
AGAAAGTCAGCATGCCAAGT+AGG + chr1_4:55979998-55980017 None:intergenic 45.0%
ATACATGCCAGTGAAGACGA+TGG - chr1_4:55980385-55980404 Msa0171290:intron 45.0%
AATTAACCATGCCACAGTCC+GGG - chr1_4:55980411-55980430 Msa0171290:intron 45.0%
TAGCATCTTCCTCTAGATCC+CGG + chr1_4:55980432-55980451 None:intergenic 45.0%
AGAGGAAGATGCTAAGCGAT+TGG - chr1_4:55980438-55980457 Msa0171290:CDS 45.0%
! CAGTTTGGTGAGGAACTTGA+AGG - chr1_4:55980463-55980482 Msa0171290:CDS 45.0%
GTAGTAATCCATGAGCTTCG+GGG + chr1_4:55980564-55980583 None:intergenic 45.0%
CGTAGTAATCCATGAGCTTC+GGG + chr1_4:55980565-55980584 None:intergenic 45.0%
CTGCAAAACTGCAAAAAGCG+AGG + chr1_4:55980595-55980614 None:intergenic 45.0%
CCAATGGCGTTAATGTTCCA+TGG + chr1_4:55980930-55980949 None:intergenic 45.0%
CCATGGAACATTAACGCCAT+TGG - chr1_4:55980927-55980946 Msa0171290:five_prime_UTR 45.0%
ACAGGGTCAATCAACACCAA+TGG + chr1_4:55980946-55980965 None:intergenic 45.0%
!!! TTTTTTTAATTTTTTATGAA+TGG - chr1_4:55977344-55977363 Msa0171290:intron 5.0%
! ACGTCGTCTCTAGAAACCAC+GGG - chr1_4:55974148-55974167 Msa0171290:three_prime_UTR 50.0%
!! ATGCAATGAAAGAGTGCCCG+TGG + chr1_4:55974167-55974186 None:intergenic 50.0%
TATTCGCTACAGTGGCAGCA+AGG + chr1_4:55974199-55974218 None:intergenic 50.0%
CAGTAGGTTGCGGTTGATTG+TGG + chr1_4:55974276-55974295 None:intergenic 50.0%
CACAATCAACCGCAACCTAC+TGG - chr1_4:55974274-55974293 Msa0171290:three_prime_UTR 50.0%
TAGCGTGTACCAGTAGGTTG+CGG + chr1_4:55974286-55974305 None:intergenic 50.0%
CCCAATTCGTCTTCAACTGC+AGG - chr1_4:55974667-55974686 Msa0171290:CDS 50.0%
! TATAAGCGGGTTCCTCAGGT+TGG - chr1_4:55975268-55975287 Msa0171290:CDS 50.0%
AAAGCTCGTGTACCAACCTG+AGG + chr1_4:55975283-55975302 None:intergenic 50.0%
! GATGCCTAGGATTTGGGGTT+AGG - chr1_4:55975396-55975415 Msa0171290:intron 50.0%
GCTTATGTGGTTCATAGGGC+TGG - chr1_4:55975464-55975483 Msa0171290:intron 50.0%
AGGTCACATAGGATCCCTGA+AGG - chr1_4:55975574-55975593 Msa0171290:CDS 50.0%
AAGGTGTAGCCCAGTGGTAT+GGG - chr1_4:55975593-55975612 Msa0171290:intron 50.0%
TAGGGGTCGAACACTAGAGT+CGG + chr1_4:55975649-55975668 None:intergenic 50.0%
ATTGAGGGTTTAGGGGGGAA+GGG - chr1_4:55976040-55976059 Msa0171290:intron 50.0%
TTGGATGGAGGGTTTAGGAG+GGG + chr1_4:55976242-55976261 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr1_4:55976244-55976263 None:intergenic 50.0%
! TCTGGTAGCGCTTTGCCTTA+TGG - chr1_4:55976532-55976551 Msa0171290:intron 50.0%
! CTGGTAGCGCTTTGCCTTAT+GGG - chr1_4:55976533-55976552 Msa0171290:intron 50.0%
! TGGTAGCGCTTTGCCTTATG+GGG - chr1_4:55976534-55976553 Msa0171290:intron 50.0%
! GCGGACACCTTCTTTTCTTC+TGG + chr1_4:55976742-55976761 None:intergenic 50.0%
TTATGTCACTGGGTTGCCTG+AGG - chr1_4:55976948-55976967 Msa0171290:intron 50.0%
ATGTGCCCAGAAAAGGGAAG+GGG + chr1_4:55977398-55977417 None:intergenic 50.0%
CATGTGCCCAGAAAAGGGAA+GGG + chr1_4:55977399-55977418 None:intergenic 50.0%
ACATGTGCCCAGAAAAGGGA+AGG + chr1_4:55977400-55977419 None:intergenic 50.0%
GAGCACATGTGCCCAGAAAA+GGG + chr1_4:55977404-55977423 None:intergenic 50.0%
TGAGCACATGTGCCCAGAAA+AGG + chr1_4:55977405-55977424 None:intergenic 50.0%
! AAAATGGTGGGACCCCTTAC+CGG + chr1_4:55977555-55977574 None:intergenic 50.0%
! GTAAGGGGTCCCACCATTTT+TGG - chr1_4:55977555-55977574 Msa0171290:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_4:55977662-55977681 Msa0171290:intron 50.0%
GCAAGACAGAAGGGTAACCT+TGG + chr1_4:55977682-55977701 None:intergenic 50.0%
!!! ACACGGGGCTTTTTGGTTTC+TGG + chr1_4:55977855-55977874 None:intergenic 50.0%
! GAGCTTAACACGGGGCTTTT+TGG + chr1_4:55977862-55977881 None:intergenic 50.0%
TGGATTGCTAGAGCCACTGA+TGG + chr1_4:55978025-55978044 None:intergenic 50.0%
AAGGCGCACCATCCAAAAGT+TGG + chr1_4:55978045-55978064 None:intergenic 50.0%
TTAGCCAGGGAGACAGACAT+CGG + chr1_4:55978088-55978107 None:intergenic 50.0%
ATGCTTGGATGGGGTATGCT+TGG - chr1_4:55978338-55978357 Msa0171290:intron 50.0%
TCACATGTGTAGCGATGCAC+TGG + chr1_4:55979247-55979266 None:intergenic 50.0%
!! CAAGGACAGAAAAGGTGCTC+AGG - chr1_4:55979847-55979866 Msa0171290:CDS 50.0%
GCTAAGCGATTGGAGCAGTT+TGG - chr1_4:55980448-55980467 Msa0171290:CDS 50.0%
CACTGTCAGCATATCGCACG+AGG - chr1_4:55974740-55974759 Msa0171290:intron 55.0%
!! CACTTGCTGTCCTAGCTCAG+TGG + chr1_4:55974844-55974863 None:intergenic 55.0%
TGAGGCGCAAGTGGAAGCTT+CGG - chr1_4:55975126-55975145 Msa0171290:intron 55.0%
GTGGAAGCTTCGGAATTCGG+TGG - chr1_4:55975136-55975155 Msa0171290:intron 55.0%
! GAAGCTTCGGAATTCGGTGG+TGG - chr1_4:55975139-55975158 Msa0171290:intron 55.0%
!! TTCGGTGGTGGTGGTGTAGT+AGG - chr1_4:55975151-55975170 Msa0171290:intron 55.0%
AGACCTTCAACACCGCCTGA+TGG - chr1_4:55975187-55975206 Msa0171290:intron 55.0%
! TCACCATCAGGCGGTGTTGA+AGG + chr1_4:55975193-55975212 None:intergenic 55.0%
! GGCATATAAGCGGGTTCCTC+AGG - chr1_4:55975264-55975283 Msa0171290:CDS 55.0%
ACCACTGGGCTACACCTTCA+GGG + chr1_4:55975591-55975610 None:intergenic 55.0%
TACCACTGGGCTACACCTTC+AGG + chr1_4:55975592-55975611 None:intergenic 55.0%
! GAAGGTGTAGCCCAGTGGTA+TGG - chr1_4:55975592-55975611 Msa0171290:intron 55.0%
TGTAGCCCAGTGGTATGGGT+TGG - chr1_4:55975597-55975616 Msa0171290:intron 55.0%
GTAGCCCAGTGGTATGGGTT+GGG - chr1_4:55975598-55975617 Msa0171290:intron 55.0%
GTGTCCCAACCCATACCACT+GGG + chr1_4:55975605-55975624 None:intergenic 55.0%
AGTGTCCCAACCCATACCAC+TGG + chr1_4:55975606-55975625 None:intergenic 55.0%
!! GGTATGGGTTGGGACACTGA+AGG - chr1_4:55975608-55975627 Msa0171290:intron 55.0%
AGGGGTCGAACACTAGAGTC+GGG + chr1_4:55975648-55975667 None:intergenic 55.0%
GATTGAGGGTTTAGGGGGGA+AGG - chr1_4:55976039-55976058 Msa0171290:intron 55.0%
TGGAGGGTTTAGGAGGGGAA+GGG + chr1_4:55976237-55976256 None:intergenic 55.0%
ATGGAGGGTTTAGGAGGGGA+AGG + chr1_4:55976238-55976257 None:intergenic 55.0%
CTTCCCAACAGCTACCACAC+TGG + chr1_4:55976701-55976720 None:intergenic 55.0%
GTGTGGTAGCTGTTGGGAAG+AGG - chr1_4:55976701-55976720 Msa0171290:intron 55.0%
! GAGAGCCCCTTCCCTTTTCT+GGG - chr1_4:55977390-55977409 Msa0171290:intron 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr1_4:55977527-55977546 Msa0171290:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr1_4:55977528-55977547 Msa0171290:intron 55.0%
AAGGGTAACCTTGGCGCAAC+TGG + chr1_4:55977673-55977692 None:intergenic 55.0%
GATTCCGATGTCTGTCTCCC+TGG - chr1_4:55978081-55978100 Msa0171290:intron 55.0%
TTCCTCTAGATCCCGGACTG+TGG + chr1_4:55980425-55980444 None:intergenic 55.0%
! GCGATTGGAGCAGTTTGGTG+AGG - chr1_4:55980453-55980472 Msa0171290:CDS 55.0%
TGCAAGAACCCCGAAGCTCA+TGG - chr1_4:55980553-55980572 Msa0171290:CDS 55.0%
TAAGGAGGCTGAGGCGCAAG+TGG - chr1_4:55975117-55975136 Msa0171290:intron 60.0%
! GCTTCGGAATTCGGTGGTGG+TGG - chr1_4:55975142-55975161 Msa0171290:intron 60.0%
! TCCCTGAAGGTGTAGCCCAG+TGG - chr1_4:55975587-55975606 Msa0171290:intron 60.0%
AGGGTTTAGGGGGGAAGGGA+GGG - chr1_4:55976044-55976063 Msa0171290:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr1_4:55976232-55976251 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr1_4:55976233-55976252 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr1_4:55976234-55976253 None:intergenic 60.0%
TGATAGGAGGAGGCCACGTC+TGG - chr1_4:55976514-55976533 Msa0171290:intron 60.0%
! AGGCAAAGCGCTACCAGACG+TGG + chr1_4:55976530-55976549 None:intergenic 60.0%
! GGAGAGCCCCTTCCCTTTTC+TGG - chr1_4:55977389-55977408 Msa0171290:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+AGG + chr1_4:55977522-55977541 None:intergenic 60.0%
TTACCGGACCCTGCGTATGC+GGG + chr1_4:55977539-55977558 None:intergenic 60.0%
CTTACCGGACCCTGCGTATG+CGG + chr1_4:55977540-55977559 None:intergenic 60.0%
GCATACGCAGGGTCCGGTAA+GGG - chr1_4:55977539-55977558 Msa0171290:intron 60.0%
CATACGCAGGGTCCGGTAAG+GGG - chr1_4:55977540-55977559 Msa0171290:intron 60.0%
TCACTCCTGCTGGTGCCTGA+TGG - chr1_4:55978221-55978240 Msa0171290:intron 60.0%
AAGCTCCATCAGGCACCAGC+AGG + chr1_4:55978229-55978248 None:intergenic 60.0%
CTAGATCCCGGACTGTGGCA+TGG + chr1_4:55980420-55980439 None:intergenic 60.0%
TGCCACAGTCCGGGATCTAG+AGG - chr1_4:55980420-55980439 Msa0171290:intron 60.0%
GAGGGTTTAGGGGGGAAGGG+AGG - chr1_4:55976043-55976062 Msa0171290:intron 65.0%
GGGTTTAGGGGGGAAGGGAG+GGG - chr1_4:55976045-55976064 Msa0171290:intron 65.0%
TTAGGGGGGAAGGGAGGGGA+TGG - chr1_4:55976049-55976068 Msa0171290:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr1_4:55976228-55976247 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr1_4:55976229-55976248 None:intergenic 65.0%
CGCATACGCAGGGTCCGGTA+AGG - chr1_4:55977538-55977557 Msa0171290:intron 65.0%
! GATGGTGCGCCTTTTCGGCC+TGG - chr1_4:55978052-55978071 Msa0171290:intron 65.0%
CCTCTCGCCCGTGCGTGGAT+CGG + chr1_4:55974127-55974146 None:intergenic 70.0%
ACGTTCCTCTCGCCCGTGCG+TGG + chr1_4:55974132-55974151 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_4:55977533-55977552 Msa0171290:intron 70.0%
CCGATCCACGCACGGGCGAG+AGG - chr1_4:55974124-55974143 Msa0171290:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55974123 55981003 55974123 ID=Msa0171290;Name=Msa0171290
chr1_4 mRNA 55974123 55981003 55974123 ID=Msa0171290-mRNA-1;Parent=Msa0171290;Name=Msa0171290-mRNA-1;_AED=0.14;_eAED=0.14;_QI=124|1|1|1|1|1|14|511|503
chr1_4 exon 55974123 55974757 55974123 ID=Msa0171290-mRNA-1:exon:16835;Parent=Msa0171290-mRNA-1
chr1_4 exon 55975229 55975320 55975229 ID=Msa0171290-mRNA-1:exon:16834;Parent=Msa0171290-mRNA-1
chr1_4 exon 55975519 55975599 55975519 ID=Msa0171290-mRNA-1:exon:16833;Parent=Msa0171290-mRNA-1
chr1_4 exon 55975929 55976005 55975929 ID=Msa0171290-mRNA-1:exon:16832;Parent=Msa0171290-mRNA-1
chr1_4 exon 55976776 55976862 55976776 ID=Msa0171290-mRNA-1:exon:16831;Parent=Msa0171290-mRNA-1
chr1_4 exon 55977005 55977107 55977005 ID=Msa0171290-mRNA-1:exon:16830;Parent=Msa0171290-mRNA-1
chr1_4 exon 55977188 55977277 55977188 ID=Msa0171290-mRNA-1:exon:16829;Parent=Msa0171290-mRNA-1
chr1_4 exon 55978023 55978061 55978023 ID=Msa0171290-mRNA-1:exon:16828;Parent=Msa0171290-mRNA-1
chr1_4 exon 55978139 55978231 55978139 ID=Msa0171290-mRNA-1:exon:16827;Parent=Msa0171290-mRNA-1
chr1_4 exon 55978373 55978606 55978373 ID=Msa0171290-mRNA-1:exon:16826;Parent=Msa0171290-mRNA-1
chr1_4 exon 55979841 55980061 55979841 ID=Msa0171290-mRNA-1:exon:16825;Parent=Msa0171290-mRNA-1
chr1_4 exon 55980438 55980575 55980438 ID=Msa0171290-mRNA-1:exon:16824;Parent=Msa0171290-mRNA-1
chr1_4 exon 55980669 55980752 55980669 ID=Msa0171290-mRNA-1:exon:16823;Parent=Msa0171290-mRNA-1
chr1_4 exon 55980831 55981003 55980831 ID=Msa0171290-mRNA-1:exon:16822;Parent=Msa0171290-mRNA-1
chr1_4 five_prime_UTR 55980880 55981003 55980880 ID=Msa0171290-mRNA-1:five_prime_utr;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55980831 55980879 55980831 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55980669 55980752 55980669 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55980438 55980575 55980438 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55979841 55980061 55979841 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55978373 55978606 55978373 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55978139 55978231 55978139 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55978023 55978061 55978023 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55977188 55977277 55977188 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55977005 55977107 55977005 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55976776 55976862 55976776 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55975929 55976005 55975929 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55975519 55975599 55975519 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55975229 55975320 55975229 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 CDS 55974634 55974757 55974634 ID=Msa0171290-mRNA-1:cds;Parent=Msa0171290-mRNA-1
chr1_4 three_prime_UTR 55974123 55974633 55974123 ID=Msa0171290-mRNA-1:three_prime_utr;Parent=Msa0171290-mRNA-1
Gene Sequence

>Msa0171290

ATGAATTCTGAAAATGGCTACGAAAGCCACAATCAACCGCAACCTACTGGTGAAAATGTCGCAGATGTTGGATGGTACGTTCTTGGAGAAAATCAACAACAACTTGGTCCTTATGTTTTCTCTGAGGTGCAAGAGCATTTCTTAAATGGATACCTATCAGAAAATACACTTTTATGGTCTGAAGGAAGAACTGAATGGCAGCCTTTGTCTTCAATTTCTGAATTATGGGATCAAATTAACCCTCAAAGACCCAATTCGTCTTCAACTGCAGTTTATGCTGAGGCTGAAGATGTGGACGAGTTTGAAAAATGGCAAAAGGAGATTAAGGAGGCTGAGGCGCAAGTGGAAGCTTCGGAATTCGGTGGTGGTGGTGTAGTAGGAGAAGACGTTGAGAGACCTTCAACACCGCCTGATGGTGAAGAAGAATTTACTGATGATGATGGGACATATAAGTGGGATAAGAGTCTTAGGGCATATAAGCGGGTTCCTCAGGAGGAGGCCACGTCTGGTAGCGCTTTGCCTTATGGGGTTGAAGAGATGACCTTTTTGAAAGAAGAGGAAGTTTTTCCGATAGTAACTGATTCTGATGCCTCAAAAATTGTTGAAGATAGTTCAAAATCGAGTGTTTCTGCAACTTCCATAAAGGAAGAAACAACTGAAGCAAAAAATACCAGTGTGGTAGCTGTTGGGAAGAGGAAGCATTCAGATAAACCAGAAGAAAAGAAGGAAGCTAATAAACCTCCTGACAGTTGGTTTGAATTAAAGGTCAATACACATGTTTATGTCACTGGGTTGCCTGAGGATGTTACTATTGATGAAGTTGTGGAAACATTTTCCAAGTATGGAATTATAAAAGAGGATCCAGAAACCAAAAAGCCCCGTGTTAAGCTCTATGTTGATAAAGAGACAGGAAGAAAAAAGGGAGATGCATTGGTTACATATCTCAAGGAACCATCAGTGGCTCTAGCAATCCAACTTTTGGATGGTGCGCCTTTTCGGCCTGGTGATAAGATTCCGATGTCTGTCTCCCTGGCTAAATTTCAGCAGAAAGGAGAGAAGTTTGTATCCAAGCAAGCTGACAAAGACAATAGACGGAAAAAGAAAACGAAAAAGTTGGAAGACAAAATGCTTGGATGGGGTGGTCGTGATGATTCAAAAGTTTTAATTCCAACAACTGTTGTCCTTCGCTATATGTTCAGTCCTGCTGAAATGAGGGCTGATGAAAATTTGCACTCAGAACTAGAAGAAGATGTTAAAGAGGAATGCACGAAGCTTGGACCTATAGATGCAGTCAAGGTATGTGATAATCATCCTCAGGGTGTTGTTTTGGTTAAATTCAAGGACAGAAAAGGTGCTCAGGCGTGCATAGAATTGATGAATGGAAGATGGTTTGGTGGTAGACAGATACATGCCAGTGAAGACGATGGTTTAATTAACCATGCCACAGTCCGGGATCTAGAGGAAGATGCTAAGCGATTGGAGCAGTTTGGTGAGGAACTTGAAGGTGAATGA

Protein sequence

>Msa0171290

MNSENGYESHNQPQPTGENVADVGWYVLGENQQQLGPYVFSEVQEHFLNGYLSENTLLWSEGRTEWQPLSSISELWDQINPQRPNSSSTAVYAEAEDVDEFEKWQKEIKEAEAQVEASEFGGGGVVGEDVERPSTPPDGEEEFTDDDGTYKWDKSLRAYKRVPQEEATSGSALPYGVEEMTFLKEEEVFPIVTDSDASKIVEDSSKSSVSATSIKEETTEAKNTSVVAVGKRKHSDKPEEKKEANKPPDSWFELKVNTHVYVTGLPEDVTIDEVVETFSKYGIIKEDPETKKPRVKLYVDKETGRKKGDALVTYLKEPSVALAIQLLDGAPFRPGDKIPMSVSLAKFQQKGEKFVSKQADKDNRRKKKTKKLEDKMLGWGGRDDSKVLIPTTVVLRYMFSPAEMRADENLHSELEEDVKEECTKLGPIDAVKVCDNHPQGVVLVKFKDRKGAQACIELMNGRWFGGRQIHASEDDGLINHATVRDLEEDAKRLEQFGEELEGE*