Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818900 | XP_003616717.1 | 90.210 | 286 | 21 | 1 | 1 | 286 | 1 | 279 | 5.97e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818900 | G7K795 | 90.210 | 286 | 21 | 1 | 1 | 286 | 1 | 279 | 2.85e-174 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025690 | Msa0818900 | -0.810864 | 9.322008e-51 | -8.615850e-47 |
| Msa0195030 | Msa0818900 | 0.808787 | 2.608646e-50 | -8.615850e-47 |
| Msa0274940 | Msa0818900 | 0.801663 | 8.097196e-49 | -8.615850e-47 |
| Msa0315660 | Msa0818900 | 0.800432 | 1.445443e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818900 | MtrunA17_Chr5g0437771 | 90.210 | 286 | 21 | 1 | 1 | 286 | 1 | 279 | 5.49e-178 | 491 |
| Msa0818900 | MtrunA17_Chr3g0114231 | 58.362 | 293 | 96 | 4 | 1 | 286 | 1 | 274 | 7.99e-105 | 306 |
| Msa0818900 | MtrunA17_Chr2g0332621 | 33.466 | 251 | 155 | 5 | 38 | 286 | 33 | 273 | 9.26e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818900 | AT3G56130.1 | 49.826 | 287 | 133 | 3 | 1 | 285 | 1 | 278 | 1.40e-79 | 242 |
| Msa0818900 | AT3G56130.2 | 62.567 | 187 | 68 | 1 | 101 | 285 | 16 | 202 | 6.04e-73 | 223 |
| Msa0818900 | AT3G56130.4 | 47.761 | 268 | 129 | 3 | 1 | 266 | 1 | 259 | 1.98e-66 | 209 |
| Msa0818900 | AT3G56130.3 | 63.095 | 168 | 60 | 1 | 120 | 285 | 24 | 191 | 5.17e-63 | 197 |
| Msa0818900 | AT3G56130.5 | 46.032 | 252 | 125 | 3 | 1 | 250 | 1 | 243 | 1.94e-58 | 187 |
| Msa0818900 | AT3G15690.2 | 40.526 | 190 | 92 | 4 | 98 | 286 | 91 | 260 | 6.79e-44 | 150 |
| Msa0818900 | AT1G52670.1 | 39.362 | 188 | 100 | 3 | 102 | 286 | 95 | 271 | 1.17e-40 | 142 |
| Msa0818900 | AT3G15690.1 | 37.059 | 170 | 86 | 4 | 98 | 266 | 91 | 240 | 1.84e-33 | 122 |
| Msa0818900 | AT3G15690.3 | 37.059 | 170 | 86 | 4 | 98 | 266 | 93 | 242 | 2.22e-33 | 122 |
Find 94 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGTTGAAGCTACTCTTTC+AGG | 0.214947 | 5_3:+55010314 | Msa0818900:CDS |
| GCGATTGTATTGGGCTAAAT+TGG | 0.223003 | 5_3:+55011149 | Msa0818900:three_prime_UTR |
| AATTGCTGAACTGAAATTAA+AGG | 0.244016 | 5_3:+55008484 | Msa0818900:CDS |
| ATAGGTTATGTGGATCATTT+TGG | 0.256226 | 5_3:+55010177 | Msa0818900:CDS |
| GGGCATTACAAAAGAATCTT+TGG | 0.281639 | 5_3:+55008056 | Msa0818900:CDS |
| GAACAGGTGGTGGTGTAGTT+GGG | 0.291872 | 5_3:-55009336 | None:intergenic |
| TATCACTAATTGCCAAGTTC+TGG | 0.301663 | 5_3:-55006904 | None:intergenic |
| TTATGCGCCGTTTATTTGTT+TGG | 0.302950 | 5_3:+55011013 | Msa0818900:three_prime_UTR |
| TTTACAGAGGCTGTTGGTTA+TGG | 0.306177 | 5_3:+55010916 | Msa0818900:intron |
| ACGATCTTTGCGATTGTATT+GGG | 0.310500 | 5_3:+55011140 | Msa0818900:three_prime_UTR |
| ATTGACAAGATCACCTTAAC+AGG | 0.316099 | 5_3:-55010210 | None:intergenic |
| ACAAATGGATTGGTCTTTGC+TGG | 0.329372 | 5_3:-55009421 | None:intergenic |
| CCTCCAATGCAGCCAACTTT+GGG | 0.332634 | 5_3:-55009465 | None:intergenic |
| TATGCGCCGTTTATTTGTTT+GGG | 0.345687 | 5_3:+55011014 | Msa0818900:three_prime_UTR |
| TGAGATGTGAATTCAGTTTA+CGG | 0.351981 | 5_3:+55011040 | Msa0818900:three_prime_UTR |
| TTGGCTGCATTGGAGGCTTC+TGG | 0.366161 | 5_3:+55009472 | Msa0818900:CDS |
| AACGATCTTTGCGATTGTAT+TGG | 0.368712 | 5_3:+55011139 | Msa0818900:three_prime_UTR |
| GGAACAGGTGGTGGTGTAGT+TGG | 0.368875 | 5_3:-55009337 | None:intergenic |
| ATCAAAGATGGACAAGTTAT+AGG | 0.369619 | 5_3:+55010159 | Msa0818900:CDS |
| GCCTCCAATGCAGCCAACTT+TGG | 0.376654 | 5_3:-55009466 | None:intergenic |
| CTGATCATCAACAGTATGAT+AGG | 0.384466 | 5_3:-55010990 | None:intergenic |
| CAAATAGCATATAGGCATAT+TGG | 0.389128 | 5_3:+55011087 | Msa0818900:three_prime_UTR |
| TGGCACTTCACTCCCTGTTA+AGG | 0.391166 | 5_3:+55010197 | Msa0818900:CDS |
| CCCAAAGTTGGCTGCATTGG+AGG | 0.391550 | 5_3:+55009465 | Msa0818900:CDS |
| TTATAATGCTGCAGCTTCCT+TGG | 0.398291 | 5_3:+55008032 | Msa0818900:intron |
| GTCCCCAAAGTTGGCTGCAT+TGG | 0.405543 | 5_3:+55009462 | Msa0818900:CDS |
| CTATATACCTCAAATCCTTT+CGG | 0.406883 | 5_3:-55008102 | None:intergenic |
| AATCCATGGAAGGGAAGAAA+TGG | 0.409056 | 5_3:-55005766 | None:intergenic |
| ACGTTGTTTCTCACAACAAA+TGG | 0.415124 | 5_3:+55006930 | Msa0818900:CDS |
| ACCATAGGTTTAGTTGGAAC+AGG | 0.416372 | 5_3:-55009352 | None:intergenic |
| TTCCCATTTCTTCCCTTCCA+TGG | 0.421417 | 5_3:+55005763 | Msa0818900:exon |
| TACAATATAGCTTATGCAAC+TGG | 0.422025 | 5_3:-55011226 | None:intergenic |
| TTGACCGTTACTTCCATGAT+TGG | 0.424488 | 5_3:+55011175 | Msa0818900:three_prime_UTR |
| GAATCAACCATAGGTTTAGT+TGG | 0.433056 | 5_3:-55009358 | None:intergenic |
| TCAAATACCTCTTTACAAAC+AGG | 0.442957 | 5_3:-55009688 | None:intergenic |
| AAAGAAAAGTAAACCAATCA+TGG | 0.449383 | 5_3:-55011188 | None:intergenic |
| TAGGAATTTCGTCCAGAACT+TGG | 0.452425 | 5_3:+55006892 | Msa0818900:CDS |
| TCTGAAGTGAGGATTGCATA+TGG | 0.459268 | 5_3:-55006823 | None:intergenic |
| ACCTGTTCCAACTAAACCTA+TGG | 0.465536 | 5_3:+55009351 | Msa0818900:CDS |
| TCATGCGGGTCATTTACAAA+TGG | 0.480948 | 5_3:-55009436 | None:intergenic |
| CTGAAGTGAGGATTGCATAT+GGG | 0.481540 | 5_3:-55006822 | None:intergenic |
| AACATTTCCGAAAGGATTTG+AGG | 0.481889 | 5_3:+55008095 | Msa0818900:CDS |
| CGGGTCATTTACAAATGGAT+TGG | 0.485415 | 5_3:-55009431 | None:intergenic |
| TGGTGTAGTTGGGGAAATGT+TGG | 0.489529 | 5_3:-55009326 | None:intergenic |
| TAATGCTGCAGCTTCCTTGG+AGG | 0.494089 | 5_3:+55008035 | Msa0818900:intron |
| TCAGCTCCCAAACAAATAAA+CGG | 0.496102 | 5_3:-55011020 | None:intergenic |
| GGTTTAGTTGGAACAGGTGG+TGG | 0.497265 | 5_3:-55009346 | None:intergenic |
| CGAAGAGGTAGAACTGTGAA+AGG | 0.503872 | 5_3:+55009652 | Msa0818900:CDS |
| GCTACCTCCTGTTTGTAAAG+AGG | 0.513029 | 5_3:+55009681 | Msa0818900:CDS |
| CACTTGATATCGTGGAATGA+TGG | 0.513270 | 5_3:-55010961 | None:intergenic |
| AATGCTGCAGCTTCCTTGGA+GGG | 0.515928 | 5_3:+55008036 | Msa0818900:intron |
| TCGGATGCAATTTACAAAGT+AGG | 0.519933 | 5_3:+55006873 | Msa0818900:CDS |
| ATCTGCAGCAAATAGCATAT+AGG | 0.523360 | 5_3:+55011079 | Msa0818900:three_prime_UTR |
| CCTTTCGGAAATGTTTGCAA+AGG | 0.528381 | 5_3:-55008087 | None:intergenic |
| GCATGATAAGTCCCCAAAGT+TGG | 0.534082 | 5_3:+55009453 | Msa0818900:CDS |
| TGGACAAGTTATAGGTTATG+TGG | 0.534522 | 5_3:+55010167 | Msa0818900:CDS |
| ATGCATATGAAGAGAAACAT+TGG | 0.535483 | 5_3:+55009283 | Msa0818900:CDS |
| CAGGGTGATATGATCAAAGA+TGG | 0.536711 | 5_3:+55010147 | Msa0818900:intron |
| TCATCAACAGTATGATAGGC+AGG | 0.540144 | 5_3:-55010986 | None:intergenic |
| AACAGGTGGTGGTGTAGTTG+GGG | 0.548272 | 5_3:-55009335 | None:intergenic |
| CTTTGAACGTGAATTAGACC+TGG | 0.551993 | 5_3:-55006848 | None:intergenic |
| AATAGCAGCGGAGGAATCCA+TGG | 0.552179 | 5_3:-55005780 | None:intergenic |
| ATCCATGGAAGGGAAGAAAT+GGG | 0.560614 | 5_3:-55005765 | None:intergenic |
| TAGACCTGGTTTCTGAAGTG+AGG | 0.566390 | 5_3:-55006834 | None:intergenic |
| TGTCTTGGTAGCATCTCCTA+TGG | 0.567149 | 5_3:+55009507 | Msa0818900:CDS |
| TCAAACCTTGCAGTCAGATG+TGG | 0.568833 | 5_3:+55010284 | Msa0818900:intron |
| AACTTTGGGGACTTATCATG+CGG | 0.569638 | 5_3:-55009451 | None:intergenic |
| CCTTTGCAAACATTTCCGAA+AGG | 0.582425 | 5_3:+55008087 | Msa0818900:CDS |
| TAAACCAATCATGGAAGTAA+CGG | 0.584635 | 5_3:-55011179 | None:intergenic |
| AACTGACACTGCTAAGTCTG+AGG | 0.584815 | 5_3:+55006991 | Msa0818900:CDS |
| AAGCTACTCTTTCAGGATGG+AGG | 0.592234 | 5_3:+55010321 | Msa0818900:CDS |
| TTACTGTTTACAGAGGCTGT+TGG | 0.593399 | 5_3:+55010910 | Msa0818900:intron |
| GAAGATGCAGAATCAACCAT+AGG | 0.594413 | 5_3:-55009367 | None:intergenic |
| CTCCAATGCAGCCAACTTTG+GGG | 0.595881 | 5_3:-55009464 | None:intergenic |
| AGAAGATCGAATAGCAGCGG+AGG | 0.596997 | 5_3:-55005789 | None:intergenic |
| GGCAGGCTCACTTGATATCG+TGG | 0.597322 | 5_3:-55010969 | None:intergenic |
| CAATCCTCACTTCAGAAACC+AGG | 0.601417 | 5_3:+55006830 | Msa0818900:CDS |
| GCAGCGGAGGAATCCATGGA+AGG | 0.604117 | 5_3:-55005776 | None:intergenic |
| CTAATTCACGTTCAAAGTGT+CGG | 0.604642 | 5_3:+55006854 | Msa0818900:CDS |
| TTGAAGCTACTCTTTCAGGA+TGG | 0.607934 | 5_3:+55010318 | Msa0818900:CDS |
| GAAGAGGTAGAACTGTGAAA+GGG | 0.618974 | 5_3:+55009653 | Msa0818900:CDS |
| TGCAGATACTAAGAATAACT+AGG | 0.625526 | 5_3:-55011063 | None:intergenic |
| GTGAGAAGATCGAATAGCAG+CGG | 0.629961 | 5_3:-55005792 | None:intergenic |
| ACTTTGGGGACTTATCATGC+GGG | 0.631353 | 5_3:-55009450 | None:intergenic |
| ATAGGTTTAGTTGGAACAGG+TGG | 0.635611 | 5_3:-55009349 | None:intergenic |
| CAGGTTGGTTCATTTCGAAG+AGG | 0.640073 | 5_3:+55009637 | Msa0818900:intron |
| CAGCGGAGGAATCCATGGAA+GGG | 0.645494 | 5_3:-55005775 | None:intergenic |
| GTTGGGGAAATGTTGGACAC+AGG | 0.655764 | 5_3:-55009319 | None:intergenic |
| ACCTTGCAGTCAGATGTGGA+TGG | 0.659433 | 5_3:+55010288 | Msa0818900:intron |
| ACTGACACTGCTAAGTCTGA+GGG | 0.660413 | 5_3:+55006992 | Msa0818900:CDS |
| GGAAATGTTGGACACAGGAG+CGG | 0.662109 | 5_3:-55009314 | None:intergenic |
| CAACAAATGGAATCGAACGT+TGG | 0.669516 | 5_3:+55006943 | Msa0818900:CDS |
| AATACCTCTTTACAAACAGG+AGG | 0.675298 | 5_3:-55009685 | None:intergenic |
| TTGACAAGATCACCTTAACA+GGG | 0.682027 | 5_3:-55010209 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTAGTTATATAAAAA+AGG | - | chr5_3:55006527-55006546 | None:intergenic | 10.0% |
| !!! | TTTATTTTTAATATGGTTAA+AGG | + | chr5_3:55006546-55006565 | Msa0818900:intron | 10.0% |
| !!! | TTATTTTTAATATGGTTAAA+GGG | + | chr5_3:55006547-55006566 | Msa0818900:intron | 10.0% |
| !!! | ATTTTTACAATAAAATTGAA+AGG | - | chr5_3:55006588-55006607 | None:intergenic | 10.0% |
| !! | ACAATTTAAGTATAATTAAA+AGG | + | chr5_3:55008550-55008569 | Msa0818900:intron | 10.0% |
| !! | TTAATTAAAAAAAAAGATTG+TGG | + | chr5_3:55009975-55009994 | Msa0818900:intron | 10.0% |
| !! | TATAAAATATAATAGTAGTT+GGG | - | chr5_3:55010584-55010603 | None:intergenic | 10.0% |
| !!! | AAAAGGTTTAATAAAACTTT+TGG | - | chr5_3:55006510-55006529 | None:intergenic | 15.0% |
| !!! | TATATTTCTATCAATATCAT+CGG | + | chr5_3:55007196-55007215 | Msa0818900:intron | 15.0% |
| !! | TTAAAAAAAAAATACAACGA+AGG | + | chr5_3:55008255-55008274 | Msa0818900:intron | 15.0% |
| !! | ATATATTCTGACATAATAAT+AGG | - | chr5_3:55009075-55009094 | None:intergenic | 15.0% |
| !! | ATTTATATATTACATACCAT+AGG | - | chr5_3:55009526-55009545 | None:intergenic | 15.0% |
| !! | CTATAAAATATAATAGTAGT+TGG | - | chr5_3:55010585-55010604 | None:intergenic | 15.0% |
| !!! | CTATTATATTTTATAGTAGT+TGG | + | chr5_3:55010589-55010608 | Msa0818900:intron | 15.0% |
| !!! | ATGAATGTTTTAACTTATAA+TGG | + | chr5_3:55010783-55010802 | Msa0818900:intron | 15.0% |
| !! | TATCTCTACAAATATCTATT+TGG | - | chr5_3:55006068-55006087 | None:intergenic | 20.0% |
| !!! | ACAATGTTTTTGAATCAATT+CGG | - | chr5_3:55006446-55006465 | None:intergenic | 20.0% |
| !! | CTTATTTGAATAACTTCTAA+AGG | - | chr5_3:55006685-55006704 | None:intergenic | 20.0% |
| !!! | CTTTAGAAGTTATTCAAATA+AGG | + | chr5_3:55006683-55006702 | Msa0818900:intron | 20.0% |
| !!! | TACTGTTAGTTTTTGAATTT+TGG | + | chr5_3:55006782-55006801 | Msa0818900:intron | 20.0% |
| !!! | ACTTATATTTGTGATTTTTG+TGG | + | chr5_3:55007045-55007064 | Msa0818900:intron | 20.0% |
| !! | TTAATTATTATAGAAGTCCT+GGG | + | chr5_3:55007164-55007183 | Msa0818900:intron | 20.0% |
| !!! | TCTTTTTGAGTAATTATACT+TGG | + | chr5_3:55007899-55007918 | Msa0818900:intron | 20.0% |
| !!! | AATAATTTAAAACTGCAGTT+TGG | + | chr5_3:55007956-55007975 | Msa0818900:intron | 20.0% |
| !! | ATATAGCTTACTATTGATAA+AGG | + | chr5_3:55008119-55008138 | Msa0818900:intron | 20.0% |
| !!! | AAACAGAAGTATTTTAATGT+GGG | - | chr5_3:55008341-55008360 | None:intergenic | 20.0% |
| !! | ATTAAAATACTTCTGTTTGA+TGG | + | chr5_3:55008343-55008362 | Msa0818900:intron | 20.0% |
| !! | TTGATAGACATGATTTATAT+AGG | - | chr5_3:55008777-55008796 | None:intergenic | 20.0% |
| !! | AAGAAGACATAAAATAATAC+AGG | - | chr5_3:55008825-55008844 | None:intergenic | 20.0% |
| !!! | AATTTTTTAATAGATGTTGC+TGG | + | chr5_3:55008901-55008920 | Msa0818900:intron | 20.0% |
| !!! | TTTTAGCCTATTGTATATAT+GGG | + | chr5_3:55009205-55009224 | Msa0818900:intron | 20.0% |
| !! | TCGTTCATAAAAAAATAGTA+CGG | + | chr5_3:55010414-55010433 | Msa0818900:intron | 20.0% |
| !!! | TTTTTTCCACTCTTAATTAA+TGG | - | chr5_3:55010473-55010492 | None:intergenic | 20.0% |
| !! | CTATTTATAGACTAATTTGA+AGG | + | chr5_3:55010620-55010639 | Msa0818900:intron | 20.0% |
| ! | TATAAAGTCATACACATGAT+TGG | + | chr5_3:55005912-55005931 | Msa0818900:intron | 25.0% |
| ! | ATTCTATGCATGTGTAAAAT+TGG | + | chr5_3:55006135-55006154 | Msa0818900:intron | 25.0% |
| !!! | TTTTAATTTCTATGCACTGA+CGG | - | chr5_3:55006167-55006186 | None:intergenic | 25.0% |
| ! | ATCATCTGTACATAACAATA+CGG | - | chr5_3:55006191-55006210 | None:intergenic | 25.0% |
| !!! | AACATTTTTTGGTGTAACTA+AGG | - | chr5_3:55006299-55006318 | None:intergenic | 25.0% |
| !!! | ACCAAAAAATGTTTTGAAAC+TGG | + | chr5_3:55006306-55006325 | Msa0818900:intron | 25.0% |
| !!! | ACCAGTTTCAAAACATTTTT+TGG | - | chr5_3:55006310-55006329 | None:intergenic | 25.0% |
| ! | TTGAAAACAATTTCACAGTT+GGG | - | chr5_3:55006333-55006352 | None:intergenic | 25.0% |
| ! | ATTGAAAACAATTTCACAGT+TGG | - | chr5_3:55006334-55006353 | None:intergenic | 25.0% |
| ! | TCAAAAACATTGTTTGTGTT+AGG | + | chr5_3:55006453-55006472 | Msa0818900:intron | 25.0% |
| !! | AACTATTTTACATGCTACAA+TGG | - | chr5_3:55006628-55006647 | None:intergenic | 25.0% |
| ! | GTTAATTATTATAGAAGTCC+TGG | + | chr5_3:55007163-55007182 | Msa0818900:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr5_3:55007501-55007520 | Msa0818900:intron | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr5_3:55007643-55007662 | Msa0818900:intron | 25.0% |
| ! | GTTCTATCATAAACCAAATT+TGG | - | chr5_3:55007683-55007702 | None:intergenic | 25.0% |
| ! | TAAGAAATTCAAATTCGATC+AGG | - | chr5_3:55007791-55007810 | None:intergenic | 25.0% |
| ! | ATACTTGGATGCTTATATTT+AGG | + | chr5_3:55007914-55007933 | Msa0818900:intron | 25.0% |
| ! | AGCATTATAACACTATTATC+AGG | - | chr5_3:55008022-55008041 | None:intergenic | 25.0% |
| !!! | CAAACAGAAGTATTTTAATG+TGG | - | chr5_3:55008342-55008361 | None:intergenic | 25.0% |
| ! | AATTGCTGAACTGAAATTAA+AGG | + | chr5_3:55008484-55008503 | Msa0818900:CDS | 25.0% |
| !!! | GTATCGTTAGTCTTAAAATT+CGG | + | chr5_3:55008654-55008673 | Msa0818900:intron | 25.0% |
| ! | TAGATATGTTATAGCAAATG+TGG | + | chr5_3:55008991-55009010 | Msa0818900:intron | 25.0% |
| !! | CTTTTAGCCTATTGTATATA+TGG | + | chr5_3:55009204-55009223 | Msa0818900:intron | 25.0% |
| ! | TGGTAACAAAAATTATGTCT+TGG | + | chr5_3:55009492-55009511 | Msa0818900:CDS | 25.0% |
| ! | AATTATGTGAATTGTGATCT+AGG | - | chr5_3:55009770-55009789 | None:intergenic | 25.0% |
| ! | GATTAGAAGTAAAATGCAAA+AGG | - | chr5_3:55009800-55009819 | None:intergenic | 25.0% |
| ! | TATCTTGAGTACTTTGATAT+AGG | + | chr5_3:55010013-55010032 | Msa0818900:intron | 25.0% |
| ! | TTGACGTATATATTCTACTA+GGG | + | chr5_3:55010036-55010055 | Msa0818900:intron | 25.0% |
| !!! | TTTTCAATTTTGAAATCCAC+AGG | + | chr5_3:55010128-55010147 | Msa0818900:intron | 25.0% |
| !!! | TTTCAATTTTGAAATCCACA+GGG | + | chr5_3:55010129-55010148 | Msa0818900:intron | 25.0% |
| ! | TTTGAAAGAAAAAGAAAGTC+AGG | - | chr5_3:55010269-55010288 | None:intergenic | 25.0% |
| ! | CGTTCATAAAAAAATAGTAC+GGG | + | chr5_3:55010415-55010434 | Msa0818900:intron | 25.0% |
| ! | AAGAGTGGAAAAAATTATTG+AGG | + | chr5_3:55010479-55010498 | Msa0818900:intron | 25.0% |
| !! | TTTCAGTAAACCATTTTCTT+TGG | - | chr5_3:55010509-55010528 | None:intergenic | 25.0% |
| ! | AAAGAAAAGTAAACCAATCA+TGG | - | chr5_3:55011191-55011210 | None:intergenic | 25.0% |
| GATTAATTTCCATGAACTGA+TGG | + | chr5_3:55006004-55006023 | Msa0818900:intron | 30.0% | |
| TCATCTGTACATAACAATAC+GGG | - | chr5_3:55006190-55006209 | None:intergenic | 30.0% | |
| AAGAGTAATTAATCAGTGTC+TGG | + | chr5_3:55006220-55006239 | Msa0818900:intron | 30.0% | |
| TTCAATTCAGTCCTTATTGT+TGG | + | chr5_3:55006348-55006367 | Msa0818900:intron | 30.0% | |
| TCAATTCAGTCCTTATTGTT+GGG | + | chr5_3:55006349-55006368 | Msa0818900:intron | 30.0% | |
| TTTAATATGACCACTAAGCA+TGG | - | chr5_3:55006742-55006761 | None:intergenic | 30.0% | |
| ATTATCCTGATCGAAGTATA+TGG | + | chr5_3:55007240-55007259 | Msa0818900:intron | 30.0% | |
| AACTTTCCTTTCAACTTAAG+TGG | - | chr5_3:55007302-55007321 | None:intergenic | 30.0% | |
| ! | TTTTCTACCAACTTTTCTAC+TGG | - | chr5_3:55007500-55007519 | None:intergenic | 30.0% |
| AAAATAGGCTTAGATGGTTT+GGG | + | chr5_3:55007516-55007535 | Msa0818900:intron | 30.0% | |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | - | chr5_3:55007626-55007645 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr5_3:55007648-55007667 | None:intergenic | 30.0% |
| AACTACGAATTTATGAGCAT+TGG | - | chr5_3:55007821-55007840 | None:intergenic | 30.0% | |
| ! | AATTTAAAACTGCAGTTTGG+AGG | + | chr5_3:55007959-55007978 | Msa0818900:intron | 30.0% |
| AACACTATTATCAGGTGTTA+AGG | - | chr5_3:55008014-55008033 | None:intergenic | 30.0% | |
| CTATATACCTCAAATCCTTT+CGG | - | chr5_3:55008105-55008124 | None:intergenic | 30.0% | |
| TAAGATATTCACATTCGCAT+TGG | - | chr5_3:55008189-55008208 | None:intergenic | 30.0% | |
| ! | CACTCTTTTTACCAATCTAT+AGG | + | chr5_3:55008301-55008320 | Msa0818900:intron | 30.0% |
| TGTAACTTTGTCCTATAGAT+TGG | - | chr5_3:55008315-55008334 | None:intergenic | 30.0% | |
| ACTGTATGTTTATAACCATG+TGG | + | chr5_3:55008588-55008607 | Msa0818900:intron | 30.0% | |
| ATAATATGTCTATAGCCACA+TGG | - | chr5_3:55008606-55008625 | None:intergenic | 30.0% | |
| ATGTGGCTATAGACATATTA+TGG | + | chr5_3:55008605-55008624 | Msa0818900:intron | 30.0% | |
| !! | AAGTATGCTCAAGTCTTATT+AGG | + | chr5_3:55008708-55008727 | Msa0818900:intron | 30.0% |
| !! | AAGTCTTATTAGGACTATGT+GGG | + | chr5_3:55008718-55008737 | Msa0818900:intron | 30.0% |
| ACAGGTCAAACAATTAAAGA+AGG | - | chr5_3:55008807-55008826 | None:intergenic | 30.0% | |
| !! | ATGATAATGTTGTTTCTGTC+CGG | + | chr5_3:55009017-55009036 | Msa0818900:intron | 30.0% |
| AATGTAAATTCAGGTGCTTT+GGG | + | chr5_3:55009048-55009067 | Msa0818900:intron | 30.0% | |
| ! | CACGTTTCTTTTGATAAACT+GGG | - | chr5_3:55009184-55009203 | None:intergenic | 30.0% |
| ACAAGACCCATATATACAAT+AGG | - | chr5_3:55009214-55009233 | None:intergenic | 30.0% | |
| ATGCATATGAAGAGAAACAT+TGG | + | chr5_3:55009283-55009302 | Msa0818900:CDS | 30.0% | |
| TCATGTCAAAGATGGTAAAT+AGG | - | chr5_3:55009572-55009591 | None:intergenic | 30.0% | |
| TTTCTTCTATCTCTGTTAAC+AGG | + | chr5_3:55009618-55009637 | Msa0818900:intron | 30.0% | |
| TCAAATACCTCTTTACAAAC+AGG | - | chr5_3:55009691-55009710 | None:intergenic | 30.0% | |
| TTGGTCAGCAAACTATAAAT+GGG | - | chr5_3:55009899-55009918 | None:intergenic | 30.0% | |
| GTTGACGTATATATTCTACT+AGG | + | chr5_3:55010035-55010054 | Msa0818900:intron | 30.0% | |
| ATCAAAGATGGACAAGTTAT+AGG | + | chr5_3:55010159-55010178 | Msa0818900:CDS | 30.0% | |
| ! | ATAGGTTATGTGGATCATTT+TGG | + | chr5_3:55010177-55010196 | Msa0818900:CDS | 30.0% |
| !! | TATTTTTGACTCGAGTAGTT+TGG | + | chr5_3:55010387-55010406 | Msa0818900:intron | 30.0% |
| !! | ATTTTTGACTCGAGTAGTTT+GGG | + | chr5_3:55010388-55010407 | Msa0818900:intron | 30.0% |
| ATGCTTCCATTAATTAAGAG+TGG | + | chr5_3:55010464-55010483 | Msa0818900:intron | 30.0% | |
| ATAGACTAATTTGAAGGCTA+TGG | + | chr5_3:55010626-55010645 | Msa0818900:intron | 30.0% | |
| ! | TATAATGGCTCTTTGATGAT+TGG | + | chr5_3:55010798-55010817 | Msa0818900:intron | 30.0% |
| ATATTTGACGAGCAAATTAG+AGG | + | chr5_3:55010847-55010866 | Msa0818900:intron | 30.0% | |
| TGAGATGTGAATTCAGTTTA+CGG | + | chr5_3:55011040-55011059 | Msa0818900:three_prime_UTR | 30.0% | |
| TGCAGATACTAAGAATAACT+AGG | - | chr5_3:55011066-55011085 | None:intergenic | 30.0% | |
| CAAATAGCATATAGGCATAT+TGG | + | chr5_3:55011087-55011106 | Msa0818900:three_prime_UTR | 30.0% | |
| TAAACCAATCATGGAAGTAA+CGG | - | chr5_3:55011182-55011201 | None:intergenic | 30.0% | |
| ! | AGTTTTACACCATCAGTTCA+TGG | - | chr5_3:55006016-55006035 | None:intergenic | 35.0% |
| AACCAGCTAACTTAAAAGAG+TGG | + | chr5_3:55006095-55006114 | Msa0818900:intron | 35.0% | |
| AGTCCTTATTGTTGGGTATA+TGG | + | chr5_3:55006356-55006375 | Msa0818900:intron | 35.0% | |
| ACTCCATATACCCAACAATA+AGG | - | chr5_3:55006362-55006381 | None:intergenic | 35.0% | |
| ATGGAGTTATGAACGATGAT+TGG | + | chr5_3:55006375-55006394 | Msa0818900:intron | 35.0% | |
| ACGATGATTGGAGATGAATA+TGG | + | chr5_3:55006387-55006406 | Msa0818900:intron | 35.0% | |
| CAGTAAGCATCTTATTGCAA+TGG | - | chr5_3:55006767-55006786 | None:intergenic | 35.0% | |
| !! | TTTTTGAATTTTGGTCCCAC+AGG | + | chr5_3:55006791-55006810 | Msa0818900:intron | 35.0% |
| ATATGGGACATAAAACCTGT+GGG | - | chr5_3:55006809-55006828 | None:intergenic | 35.0% | |
| CTAATTCACGTTCAAAGTGT+CGG | + | chr5_3:55006854-55006873 | Msa0818900:CDS | 35.0% | |
| TCGGATGCAATTTACAAAGT+AGG | + | chr5_3:55006873-55006892 | Msa0818900:CDS | 35.0% | |
| TATCACTAATTGCCAAGTTC+TGG | - | chr5_3:55006907-55006926 | None:intergenic | 35.0% | |
| !! | ACGTTGTTTCTCACAACAAA+TGG | + | chr5_3:55006930-55006949 | Msa0818900:CDS | 35.0% |
| ! | TTTGTGATTTTTGTGGCTGT+TGG | + | chr5_3:55007052-55007071 | Msa0818900:intron | 35.0% |
| TGAACAGCATAAAAAGAACG+AGG | - | chr5_3:55007099-55007118 | None:intergenic | 35.0% | |
| !!! | TTGATTTCTAGCTTTTGCTG+TGG | + | chr5_3:55007122-55007141 | Msa0818900:intron | 35.0% |
| !! | AGAGTACCACTTAAGTTGAA+AGG | + | chr5_3:55007293-55007312 | Msa0818900:intron | 35.0% |
| ATTCCTAATCCTATCATGTC+TGG | - | chr5_3:55007446-55007465 | None:intergenic | 35.0% | |
| GATTAGGAATGACACCATTA+GGG | + | chr5_3:55007456-55007475 | Msa0818900:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr5_3:55007510-55007529 | Msa0818900:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr5_3:55007515-55007534 | Msa0818900:intron | 35.0% | |
| TTGATCTACTCTTCTTACCA+CGG | - | chr5_3:55007567-55007586 | None:intergenic | 35.0% | |
| GGTAAGAAGAGTAGATCAAA+TGG | + | chr5_3:55007568-55007587 | Msa0818900:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr5_3:55007571-55007590 | Msa0818900:intron | 35.0% | |
| AGTCAAGTTAAAAGAGGTAG+AGG | + | chr5_3:55007596-55007615 | Msa0818900:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr5_3:55007655-55007674 | Msa0818900:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATT+TGG | + | chr5_3:55007667-55007686 | Msa0818900:intron | 35.0% |
| GTGAATATGTTGACCTGTAA+TGG | + | chr5_3:55007846-55007865 | Msa0818900:intron | 35.0% | |
| GGTAACATGTTATTGCAGTT+TGG | + | chr5_3:55007980-55007999 | Msa0818900:intron | 35.0% | |
| GGGCATTACAAAAGAATCTT+TGG | + | chr5_3:55008056-55008075 | Msa0818900:CDS | 35.0% | |
| AACATTTCCGAAAGGATTTG+AGG | + | chr5_3:55008095-55008114 | Msa0818900:CDS | 35.0% | |
| TTCACATTCGCATTGGAAAA+TGG | - | chr5_3:55008182-55008201 | None:intergenic | 35.0% | |
| AATACAACGAAGGACATACT+TGG | + | chr5_3:55008265-55008284 | Msa0818900:intron | 35.0% | |
| ATACAACGAAGGACATACTT+GGG | + | chr5_3:55008266-55008285 | Msa0818900:intron | 35.0% | |
| !!! | TAACTCTTTTTTCCCTGACT+TGG | + | chr5_3:55008403-55008422 | Msa0818900:intron | 35.0% |
| !!! | TGTCTGGTTTTCTTATGATC+AGG | + | chr5_3:55008430-55008449 | Msa0818900:intron | 35.0% |
| ACACACACAAAAAGGAATTG+TGG | - | chr5_3:55008634-55008653 | None:intergenic | 35.0% | |
| AACGATACACACACACAAAA+AGG | - | chr5_3:55008642-55008661 | None:intergenic | 35.0% | |
| ! | GTCTTAAAATTCGGCCTTTT+AGG | + | chr5_3:55008663-55008682 | Msa0818900:intron | 35.0% |
| !! | CAAGTCTTATTAGGACTATG+TGG | + | chr5_3:55008717-55008736 | Msa0818900:intron | 35.0% |
| !! | AGTCTTATTAGGACTATGTG+GGG | + | chr5_3:55008719-55008738 | Msa0818900:intron | 35.0% |
| ATGAAGAGTAATCCAGTAGT+AGG | - | chr5_3:55008854-55008873 | None:intergenic | 35.0% | |
| AGTTGTCACAGCATATTAGA+GGG | - | chr5_3:55008942-55008961 | None:intergenic | 35.0% | |
| TAGTTGTCACAGCATATTAG+AGG | - | chr5_3:55008943-55008962 | None:intergenic | 35.0% | |
| CTAATATGCTGTGACAACTA+TGG | + | chr5_3:55008943-55008962 | Msa0818900:intron | 35.0% | |
| GAATGTAAATTCAGGTGCTT+TGG | + | chr5_3:55009047-55009066 | Msa0818900:intron | 35.0% | |
| ATGTAAATTCAGGTGCTTTG+GGG | + | chr5_3:55009049-55009068 | Msa0818900:intron | 35.0% | |
| ! | GCACGTTTCTTTTGATAAAC+TGG | - | chr5_3:55009185-55009204 | None:intergenic | 35.0% |
| !! | TTGACTTTTGTTGTCCTAAC+AGG | + | chr5_3:55009246-55009265 | Msa0818900:intron | 35.0% |
| GAATCAACCATAGGTTTAGT+TGG | - | chr5_3:55009361-55009380 | None:intergenic | 35.0% | |
| ! | TTTGCTGGAGATGATTTTGA+TGG | - | chr5_3:55009409-55009428 | None:intergenic | 35.0% |
| TACTTAGCTCATGTCAAAGA+TGG | - | chr5_3:55009580-55009599 | None:intergenic | 35.0% | |
| TTCTATCTCTGTTAACAGGT+TGG | + | chr5_3:55009622-55009641 | Msa0818900:intron | 35.0% | |
| AATACCTCTTTACAAACAGG+AGG | - | chr5_3:55009688-55009707 | None:intergenic | 35.0% | |
| CACACATTACTTACATCTCA+AGG | + | chr5_3:55009855-55009874 | Msa0818900:intron | 35.0% | |
| GTTGGTCAGCAAACTATAAA+TGG | - | chr5_3:55009900-55009919 | None:intergenic | 35.0% | |
| GTATTCTTCAAATGTTTGCC+AGG | + | chr5_3:55010071-55010090 | Msa0818900:intron | 35.0% | |
| TGCAAAAAATACGACAAACC+TGG | - | chr5_3:55010092-55010111 | None:intergenic | 35.0% | |
| TGGACAAGTTATAGGTTATG+TGG | + | chr5_3:55010167-55010186 | Msa0818900:CDS | 35.0% | |
| TTGACAAGATCACCTTAACA+GGG | - | chr5_3:55010212-55010231 | None:intergenic | 35.0% | |
| ATTGACAAGATCACCTTAAC+AGG | - | chr5_3:55010213-55010232 | None:intergenic | 35.0% | |
| TTGAGGAAGACCAAAGAAAA+TGG | + | chr5_3:55010496-55010515 | Msa0818900:intron | 35.0% | |
| !! | TTGCTGTTTACTGTTTACAG+AGG | + | chr5_3:55010903-55010922 | Msa0818900:intron | 35.0% |
| CTGATCATCAACAGTATGAT+AGG | - | chr5_3:55010993-55011012 | None:intergenic | 35.0% | |
| TTATGCGCCGTTTATTTGTT+TGG | + | chr5_3:55011013-55011032 | Msa0818900:three_prime_UTR | 35.0% | |
| TATGCGCCGTTTATTTGTTT+GGG | + | chr5_3:55011014-55011033 | Msa0818900:three_prime_UTR | 35.0% | |
| TCAGCTCCCAAACAAATAAA+CGG | - | chr5_3:55011023-55011042 | None:intergenic | 35.0% | |
| ATCTGCAGCAAATAGCATAT+AGG | + | chr5_3:55011079-55011098 | Msa0818900:three_prime_UTR | 35.0% | |
| AACGATCTTTGCGATTGTAT+TGG | + | chr5_3:55011139-55011158 | Msa0818900:three_prime_UTR | 35.0% | |
| ACGATCTTTGCGATTGTATT+GGG | + | chr5_3:55011140-55011159 | Msa0818900:three_prime_UTR | 35.0% | |
| ATCCATGGAAGGGAAGAAAT+GGG | - | chr5_3:55005768-55005787 | None:intergenic | 40.0% | |
| AATCCATGGAAGGGAAGAAA+TGG | - | chr5_3:55005769-55005788 | None:intergenic | 40.0% | |
| !!! | TGCCACTCTTTTAAGTTAGC+TGG | - | chr5_3:55006100-55006119 | None:intergenic | 40.0% |
| ATCAGTATCACCATGCTTAG+TGG | + | chr5_3:55006729-55006748 | Msa0818900:intron | 40.0% | |
| CATATGGGACATAAAACCTG+TGG | - | chr5_3:55006810-55006829 | None:intergenic | 40.0% | |
| CTGAAGTGAGGATTGCATAT+GGG | - | chr5_3:55006825-55006844 | None:intergenic | 40.0% | |
| ! | TCTGAAGTGAGGATTGCATA+TGG | - | chr5_3:55006826-55006845 | None:intergenic | 40.0% |
| CTTTGAACGTGAATTAGACC+TGG | - | chr5_3:55006851-55006870 | None:intergenic | 40.0% | |
| TAGGAATTTCGTCCAGAACT+TGG | + | chr5_3:55006892-55006911 | Msa0818900:CDS | 40.0% | |
| CAACAAATGGAATCGAACGT+TGG | + | chr5_3:55006943-55006962 | Msa0818900:CDS | 40.0% | |
| !! | TTTTTGTGGCTGTTGGTTGA+AGG | + | chr5_3:55007059-55007078 | Msa0818900:intron | 40.0% |
| GAAATATAAAACTGCTGCCC+AGG | - | chr5_3:55007184-55007203 | None:intergenic | 40.0% | |
| CTTCTCCATATACTTCGATC+AGG | - | chr5_3:55007248-55007267 | None:intergenic | 40.0% | |
| AAGTAAGTGTAGCAGAGATG+AGG | + | chr5_3:55007395-55007414 | Msa0818900:intron | 40.0% | |
| AGACCAGACATGATAGGATT+AGG | + | chr5_3:55007440-55007459 | Msa0818900:intron | 40.0% | |
| GGATTAGGAATGACACCATT+AGG | + | chr5_3:55007455-55007474 | Msa0818900:intron | 40.0% | |
| GAGGAGAGTCAAGTTAAAAG+AGG | + | chr5_3:55007590-55007609 | Msa0818900:intron | 40.0% | |
| AAATGACACACAGCCATTAC+AGG | - | chr5_3:55007862-55007881 | None:intergenic | 40.0% | |
| TTATAATGCTGCAGCTTCCT+TGG | + | chr5_3:55008032-55008051 | Msa0818900:intron | 40.0% | |
| ! | TTCTTTTGTAATGCCCTCCA+AGG | - | chr5_3:55008052-55008071 | None:intergenic | 40.0% |
| CCTTTCGGAAATGTTTGCAA+AGG | - | chr5_3:55008090-55008109 | None:intergenic | 40.0% | |
| CCTTTGCAAACATTTCCGAA+AGG | + | chr5_3:55008087-55008106 | Msa0818900:CDS | 40.0% | |
| GGAAAATGGCGGTTAATGAA+TGG | - | chr5_3:55008168-55008187 | None:intergenic | 40.0% | |
| ACATTCGCATTGGAAAATGG+CGG | - | chr5_3:55008179-55008198 | None:intergenic | 40.0% | |
| ACCAGACATTATCCAAGTCA+GGG | - | chr5_3:55008418-55008437 | None:intergenic | 40.0% | |
| AACCAGACATTATCCAAGTC+AGG | - | chr5_3:55008419-55008438 | None:intergenic | 40.0% | |
| GCAGAAAACAAGAGACTAGA+GGG | - | chr5_3:55008512-55008531 | None:intergenic | 40.0% | |
| AGCAGAAAACAAGAGACTAG+AGG | - | chr5_3:55008513-55008532 | None:intergenic | 40.0% | |
| TTGAGCATACTTCACCTCTT+GGG | - | chr5_3:55008700-55008719 | None:intergenic | 40.0% | |
| ATGACGTCATTTGACTCACA+TGG | - | chr5_3:55008749-55008768 | None:intergenic | 40.0% | |
| CTTCTTGAACTTCCTACTAC+TGG | + | chr5_3:55008839-55008858 | Msa0818900:intron | 40.0% | |
| TTAGAGGGCGATATACATGT+AGG | - | chr5_3:55008927-55008946 | None:intergenic | 40.0% | |
| GAATTTACATTCTGCTACGC+CGG | - | chr5_3:55009039-55009058 | None:intergenic | 40.0% | |
| GCGTAGCAGAATGTAAATTC+AGG | + | chr5_3:55009039-55009058 | Msa0818900:intron | 40.0% | |
| !! | CTTTTGTTGTCCTAACAGGT+TGG | + | chr5_3:55009250-55009269 | Msa0818900:intron | 40.0% |
| ATAGGTTTAGTTGGAACAGG+TGG | - | chr5_3:55009352-55009371 | None:intergenic | 40.0% | |
| ACCTGTTCCAACTAAACCTA+TGG | + | chr5_3:55009351-55009370 | Msa0818900:CDS | 40.0% | |
| ACCATAGGTTTAGTTGGAAC+AGG | - | chr5_3:55009355-55009374 | None:intergenic | 40.0% | |
| GAAGATGCAGAATCAACCAT+AGG | - | chr5_3:55009370-55009389 | None:intergenic | 40.0% | |
| !!! | TTTTGATGGTGATGGTGTAG+AGG | - | chr5_3:55009395-55009414 | None:intergenic | 40.0% |
| !!! | GGAGATGATTTTGATGGTGA+TGG | - | chr5_3:55009403-55009422 | None:intergenic | 40.0% |
| !! | ACAAATGGATTGGTCTTTGC+TGG | - | chr5_3:55009424-55009443 | None:intergenic | 40.0% |
| CGGGTCATTTACAAATGGAT+TGG | - | chr5_3:55009434-55009453 | None:intergenic | 40.0% | |
| TCATGCGGGTCATTTACAAA+TGG | - | chr5_3:55009439-55009458 | None:intergenic | 40.0% | |
| ! | AACTTTGGGGACTTATCATG+CGG | - | chr5_3:55009454-55009473 | None:intergenic | 40.0% |
| GAAGAGGTAGAACTGTGAAA+GGG | + | chr5_3:55009653-55009672 | Msa0818900:CDS | 40.0% | |
| ACCACAATGATAGTAGACAC+GGG | - | chr5_3:55009720-55009739 | None:intergenic | 40.0% | |
| CACCACAATGATAGTAGACA+CGG | - | chr5_3:55009721-55009740 | None:intergenic | 40.0% | |
| TCAGCATATGCATGTTAGCA+AGG | - | chr5_3:55009941-55009960 | None:intergenic | 40.0% | |
| TCTTTGATCATATCACCCTG+TGG | - | chr5_3:55010147-55010166 | None:intergenic | 40.0% | |
| CAGGGTGATATGATCAAAGA+TGG | + | chr5_3:55010147-55010166 | Msa0818900:intron | 40.0% | |
| ! | AGTGTTGAAGCTACTCTTTC+AGG | + | chr5_3:55010314-55010333 | Msa0818900:CDS | 40.0% |
| TTGAAGCTACTCTTTCAGGA+TGG | + | chr5_3:55010318-55010337 | Msa0818900:CDS | 40.0% | |
| TCTGTTGCTCTTTCTTAGCA+TGG | + | chr5_3:55010680-55010699 | Msa0818900:intron | 40.0% | |
| TTACTGTTTACAGAGGCTGT+TGG | + | chr5_3:55010910-55010929 | Msa0818900:intron | 40.0% | |
| ! | TTTACAGAGGCTGTTGGTTA+TGG | + | chr5_3:55010916-55010935 | Msa0818900:intron | 40.0% |
| CACTTGATATCGTGGAATGA+TGG | - | chr5_3:55010964-55010983 | None:intergenic | 40.0% | |
| TCATCAACAGTATGATAGGC+AGG | - | chr5_3:55010989-55011008 | None:intergenic | 40.0% | |
| GCGATTGTATTGGGCTAAAT+TGG | + | chr5_3:55011149-55011168 | Msa0818900:three_prime_UTR | 40.0% | |
| TTGACCGTTACTTCCATGAT+TGG | + | chr5_3:55011175-55011194 | Msa0818900:three_prime_UTR | 40.0% | |
| TTCCCATTTCTTCCCTTCCA+TGG | + | chr5_3:55005763-55005782 | Msa0818900:exon | 45.0% | |
| GTGAGAAGATCGAATAGCAG+CGG | - | chr5_3:55005795-55005814 | None:intergenic | 45.0% | |
| CAATCCTCACTTCAGAAACC+AGG | + | chr5_3:55006830-55006849 | Msa0818900:CDS | 45.0% | |
| !! | TAGACCTGGTTTCTGAAGTG+AGG | - | chr5_3:55006837-55006856 | None:intergenic | 45.0% |
| AACTGACACTGCTAAGTCTG+AGG | + | chr5_3:55006991-55007010 | Msa0818900:CDS | 45.0% | |
| ACTGACACTGCTAAGTCTGA+GGG | + | chr5_3:55006992-55007011 | Msa0818900:CDS | 45.0% | |
| AGTATATGGAGAAGAGCCTC+AGG | + | chr5_3:55007254-55007273 | Msa0818900:intron | 45.0% | |
| GTATATGGAGAAGAGCCTCA+GGG | + | chr5_3:55007255-55007274 | Msa0818900:intron | 45.0% | |
| TATATGGAGAAGAGCCTCAG+GGG | + | chr5_3:55007256-55007275 | Msa0818900:intron | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | + | chr5_3:55007348-55007367 | Msa0818900:intron | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | + | chr5_3:55007349-55007368 | Msa0818900:intron | 45.0% |
| GTGGTAAGACCAGACATGAT+AGG | + | chr5_3:55007434-55007453 | Msa0818900:intron | 45.0% | |
| ACACCATTAGGGAGAGAGTT+GGG | + | chr5_3:55007467-55007486 | Msa0818900:intron | 45.0% | |
| GGTAGCACCAGTAGAAAAGT+TGG | + | chr5_3:55007490-55007509 | Msa0818900:intron | 45.0% | |
| CTTCTTACCACGGCATCTAT+GGG | - | chr5_3:55007557-55007576 | None:intergenic | 45.0% | |
| TCTTCTTACCACGGCATCTA+TGG | - | chr5_3:55007558-55007577 | None:intergenic | 45.0% | |
| AAAGAGGTAGAGGAAGACCT+AGG | + | chr5_3:55007606-55007625 | Msa0818900:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5_3:55007736-55007755 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5_3:55007737-55007756 | None:intergenic | 45.0% |
| !! | TCCCTGACTTGGATAATGTC+TGG | + | chr5_3:55008414-55008433 | Msa0818900:intron | 45.0% |
| !! | TCACCTCTTGGGGTTAGTTA+GGG | - | chr5_3:55008689-55008708 | None:intergenic | 45.0% |
| !! | TTCACCTCTTGGGGTTAGTT+AGG | - | chr5_3:55008690-55008709 | None:intergenic | 45.0% |
| TGAGCATACTTCACCTCTTG+GGG | - | chr5_3:55008699-55008718 | None:intergenic | 45.0% | |
| CTTGAGCATACTTCACCTCT+TGG | - | chr5_3:55008701-55008720 | None:intergenic | 45.0% | |
| CTCAAACTCTCCAACCTGTT+AGG | - | chr5_3:55009263-55009282 | None:intergenic | 45.0% | |
| TGGTGTAGTTGGGGAAATGT+TGG | - | chr5_3:55009329-55009348 | None:intergenic | 45.0% | |
| ! | ACTTTGGGGACTTATCATGC+GGG | - | chr5_3:55009453-55009472 | None:intergenic | 45.0% |
| GCATGATAAGTCCCCAAAGT+TGG | + | chr5_3:55009453-55009472 | Msa0818900:CDS | 45.0% | |
| ! | TGTCTTGGTAGCATCTCCTA+TGG | + | chr5_3:55009507-55009526 | Msa0818900:CDS | 45.0% |
| !! | CAGGTTGGTTCATTTCGAAG+AGG | + | chr5_3:55009637-55009656 | Msa0818900:intron | 45.0% |
| CGAAGAGGTAGAACTGTGAA+AGG | + | chr5_3:55009652-55009671 | Msa0818900:CDS | 45.0% | |
| GCTACCTCCTGTTTGTAAAG+AGG | + | chr5_3:55009681-55009700 | Msa0818900:CDS | 45.0% | |
| TCCCGTGTCTACTATCATTG+TGG | + | chr5_3:55009716-55009735 | Msa0818900:intron | 45.0% | |
| ACCAACCTAAGTCTACTAGC+TGG | + | chr5_3:55009914-55009933 | Msa0818900:intron | 45.0% | |
| TCCAGCTAGTAGACTTAGGT+TGG | - | chr5_3:55009918-55009937 | None:intergenic | 45.0% | |
| AAGGTCCAGCTAGTAGACTT+AGG | - | chr5_3:55009922-55009941 | None:intergenic | 45.0% | |
| GAAAGTCAGGAGCTGTACTT+AGG | - | chr5_3:55010256-55010275 | None:intergenic | 45.0% | |
| TCAAACCTTGCAGTCAGATG+TGG | + | chr5_3:55010284-55010303 | Msa0818900:intron | 45.0% | |
| AAGCTACTCTTTCAGGATGG+AGG | + | chr5_3:55010321-55010340 | Msa0818900:CDS | 45.0% | |
| ! | CAAGTGTTGTTGACAGTAGG+TGG | - | chr5_3:55010754-55010773 | None:intergenic | 45.0% |
| CACCTACTGTCAACAACACT+TGG | + | chr5_3:55010752-55010771 | Msa0818900:intron | 45.0% | |
| ! | GTCCAAGTGTTGTTGACAGT+AGG | - | chr5_3:55010757-55010776 | None:intergenic | 45.0% |
| !!! | TAATTTCTTTATTTTTAATA+TGG | + | chr5_3:55006539-55006558 | Msa0818900:intron | 5.0% |
| !!! | AAATTGTATTTTAAATTTTA+TGG | - | chr5_3:55008537-55008556 | None:intergenic | 5.0% |
| AATAGCAGCGGAGGAATCCA+TGG | - | chr5_3:55005783-55005802 | None:intergenic | 50.0% | |
| AGAAGATCGAATAGCAGCGG+AGG | - | chr5_3:55005792-55005811 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_3:55005820-55005839 | None:intergenic | 50.0% | |
| ACACTGCTAAGTCTGAGGGT+GGG | + | chr5_3:55006996-55007015 | Msa0818900:intron | 50.0% | |
| ! | TTGTGGCTGTTGGTTGAAGG+TGG | + | chr5_3:55007062-55007081 | Msa0818900:intron | 50.0% |
| ! | TGTTGGTTGAAGGTGGCAAC+TGG | + | chr5_3:55007069-55007088 | Msa0818900:intron | 50.0% |
| CTTATCGCACAAAACCCCTG+AGG | - | chr5_3:55007273-55007292 | None:intergenic | 50.0% | |
| CTATCAGACAGCAGTCAGAC+CGG | + | chr5_3:55007322-55007341 | Msa0818900:intron | 50.0% | |
| ACCGGCGATGTTGTATGGTA+CGG | + | chr5_3:55007340-55007359 | Msa0818900:intron | 50.0% | |
| TCCGTACCATACAACATCGC+CGG | - | chr5_3:55007344-55007363 | None:intergenic | 50.0% | |
| ! | CAGAGATGAGGATTTTGCGC+TGG | + | chr5_3:55007407-55007426 | Msa0818900:intron | 50.0% |
| ! | AGGATTTTGCGCTGGATGAG+TGG | + | chr5_3:55007415-55007434 | Msa0818900:intron | 50.0% |
| GACACCATTAGGGAGAGAGT+TGG | + | chr5_3:55007466-55007485 | Msa0818900:intron | 50.0% | |
| CACCATTAGGGAGAGAGTTG+GGG | + | chr5_3:55007468-55007487 | Msa0818900:intron | 50.0% | |
| ACCATTAGGGAGAGAGTTGG+GGG | + | chr5_3:55007469-55007488 | Msa0818900:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5_3:55007732-55007751 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5_3:55007738-55007757 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5_3:55007735-55007754 | Msa0818900:intron | 50.0% | |
| TAATGCTGCAGCTTCCTTGG+AGG | + | chr5_3:55008035-55008054 | Msa0818900:intron | 50.0% | |
| AATGCTGCAGCTTCCTTGGA+GGG | + | chr5_3:55008036-55008055 | Msa0818900:intron | 50.0% | |
| ACTAAAAGCTCGCAGTCGCA+GGG | - | chr5_3:55008217-55008236 | None:intergenic | 50.0% | |
| TACTAAAAGCTCGCAGTCGC+AGG | - | chr5_3:55008218-55008237 | None:intergenic | 50.0% | |
| !! | GGGGTTAGTTAGGGCCTAAA+AGG | - | chr5_3:55008680-55008699 | None:intergenic | 50.0% |
| GGAAATGTTGGACACAGGAG+CGG | - | chr5_3:55009317-55009336 | None:intergenic | 50.0% | |
| GTTGGGGAAATGTTGGACAC+AGG | - | chr5_3:55009322-55009341 | None:intergenic | 50.0% | |
| ! | AACAGGTGGTGGTGTAGTTG+GGG | - | chr5_3:55009338-55009357 | None:intergenic | 50.0% |
| ! | GAACAGGTGGTGGTGTAGTT+GGG | - | chr5_3:55009339-55009358 | None:intergenic | 50.0% |
| GGTTTAGTTGGAACAGGTGG+TGG | - | chr5_3:55009349-55009368 | None:intergenic | 50.0% | |
| CTCCAATGCAGCCAACTTTG+GGG | - | chr5_3:55009467-55009486 | None:intergenic | 50.0% | |
| CCTCCAATGCAGCCAACTTT+GGG | - | chr5_3:55009468-55009487 | None:intergenic | 50.0% | |
| TGGCACTTCACTCCCTGTTA+AGG | + | chr5_3:55010197-55010216 | Msa0818900:CDS | 50.0% | |
| GTCAGGAGCTGTACTTAGGA+AGG | - | chr5_3:55010252-55010271 | None:intergenic | 50.0% | |
| ACCTTGCAGTCAGATGTGGA+TGG | + | chr5_3:55010288-55010307 | Msa0818900:intron | 50.0% | |
| TCCATCCACATCTGACTGCA+AGG | - | chr5_3:55010292-55010311 | None:intergenic | 50.0% | |
| CAGCGGAGGAATCCATGGAA+GGG | - | chr5_3:55005778-55005797 | None:intergenic | 55.0% | |
| GACACTGCTAAGTCTGAGGG+TGG | + | chr5_3:55006995-55007014 | Msa0818900:intron | 55.0% | |
| GTCAGACCGGCGATGTTGTA+TGG | + | chr5_3:55007335-55007354 | Msa0818900:intron | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+CGG | + | chr5_3:55007352-55007371 | Msa0818900:intron | 55.0% |
| ACCCCCAACTCTCTCCCTAA+TGG | - | chr5_3:55007473-55007492 | None:intergenic | 55.0% | |
| GAGAAGACCCATAGATGCCG+TGG | + | chr5_3:55007547-55007566 | Msa0818900:intron | 55.0% | |
| CTAAGTGGGGTCGGCTACAT+GGG | - | chr5_3:55007723-55007742 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5_3:55007724-55007743 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr5_3:55007723-55007742 | Msa0818900:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr5_3:55007724-55007743 | Msa0818900:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_3:55007730-55007749 | Msa0818900:intron | 55.0% | |
| CTAAAAGCTCGCAGTCGCAG+GGG | - | chr5_3:55008216-55008235 | None:intergenic | 55.0% | |
| AGGCCCTAACTAACCCCAAG+AGG | + | chr5_3:55008683-55008702 | Msa0818900:intron | 55.0% | |
| ! | GGAACAGGTGGTGGTGTAGT+TGG | - | chr5_3:55009340-55009359 | None:intergenic | 55.0% |
| GTCCCCAAAGTTGGCTGCAT+TGG | + | chr5_3:55009462-55009481 | Msa0818900:CDS | 55.0% | |
| CCCAAAGTTGGCTGCATTGG+AGG | + | chr5_3:55009465-55009484 | Msa0818900:CDS | 55.0% | |
| GCCTCCAATGCAGCCAACTT+TGG | - | chr5_3:55009469-55009488 | None:intergenic | 55.0% | |
| TTGGCTGCATTGGAGGCTTC+TGG | + | chr5_3:55009472-55009491 | Msa0818900:CDS | 55.0% | |
| GTGTACTCGCATCGCTATGC+AGG | - | chr5_3:55009830-55009849 | None:intergenic | 55.0% | |
| GGCAGGCTCACTTGATATCG+TGG | - | chr5_3:55010972-55010991 | None:intergenic | 55.0% | |
| GCAGCGGAGGAATCCATGGA+AGG | - | chr5_3:55005779-55005798 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55005740 | 55011240 | 55005740 | ID=Msa0818900;Name=Msa0818900 |
| chr5_3 | mRNA | 55005740 | 55011240 | 55005740 | ID=Msa0818900-mRNA-1;Parent=Msa0818900;Name=Msa0818900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=42|1|1|1|1|1|9|256|286 |
| chr5_3 | exon | 55005740 | 55005815 | 55005740 | ID=Msa0818900-mRNA-1:exon:16665;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55006813 | 55007013 | 55006813 | ID=Msa0818900-mRNA-1:exon:16666;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55008046 | 55008116 | 55008046 | ID=Msa0818900-mRNA-1:exon:16667;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55008452 | 55008505 | 55008452 | ID=Msa0818900-mRNA-1:exon:16668;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55009268 | 55009528 | 55009268 | ID=Msa0818900-mRNA-1:exon:16669;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55009640 | 55009702 | 55009640 | ID=Msa0818900-mRNA-1:exon:16670;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55010150 | 55010218 | 55010150 | ID=Msa0818900-mRNA-1:exon:16671;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55010297 | 55010342 | 55010297 | ID=Msa0818900-mRNA-1:exon:16672;Parent=Msa0818900-mRNA-1 |
| chr5_3 | exon | 55010923 | 55011240 | 55010923 | ID=Msa0818900-mRNA-1:exon:16673;Parent=Msa0818900-mRNA-1 |
| chr5_3 | five_prime_UTR | 55005740 | 55005781 | 55005740 | ID=Msa0818900-mRNA-1:five_prime_utr;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55005782 | 55005815 | 55005782 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55006813 | 55007013 | 55006813 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55008046 | 55008116 | 55008046 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55008452 | 55008505 | 55008452 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55009268 | 55009528 | 55009268 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55009640 | 55009702 | 55009640 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55010150 | 55010218 | 55010150 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55010297 | 55010342 | 55010297 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | CDS | 55010923 | 55010984 | 55010923 | ID=Msa0818900-mRNA-1:cds;Parent=Msa0818900-mRNA-1 |
| chr5_3 | three_prime_UTR | 55010985 | 55011240 | 55010985 | ID=Msa0818900-mRNA-1:three_prime_utr;Parent=Msa0818900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
