Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274940 | XP_013462674.1 | 96.403 | 139 | 5 | 0 | 1 | 139 | 1 | 139 | 1.19e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274940 | sp|P93092|ACP1_CASGL | 66.187 | 139 | 43 | 2 | 1 | 139 | 1 | 135 | 7.07e-55 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0274940 | 0.815296 | 9.943823e-52 | -8.615850e-47 |
| Msa0003330 | Msa0274940 | 0.817488 | 3.212643e-52 | -8.615850e-47 |
| Msa0016440 | Msa0274940 | 0.803832 | 2.887851e-49 | -8.615850e-47 |
| Msa0021290 | Msa0274940 | 0.812647 | 3.816196e-51 | -8.615850e-47 |
| Msa0021320 | Msa0274940 | 0.806741 | 7.098228e-50 | -8.615850e-47 |
| Msa0025690 | Msa0274940 | -0.821565 | 3.773504e-53 | -8.615850e-47 |
| Msa0027590 | Msa0274940 | 0.815986 | 6.979269e-52 | -8.615850e-47 |
| Msa0027610 | Msa0274940 | -0.813212 | 2.869217e-51 | -8.615850e-47 |
| Msa0029730 | Msa0274940 | 0.859602 | 3.692166e-63 | -8.615850e-47 |
| Msa0037230 | Msa0274940 | 0.849227 | 3.702996e-60 | -8.615850e-47 |
| Msa0042510 | Msa0274940 | 0.828203 | 1.024612e-54 | -8.615850e-47 |
| Msa0044010 | Msa0274940 | 0.807825 | 4.184197e-50 | -8.615850e-47 |
| Msa0050320 | Msa0274940 | -0.815332 | 9.762539e-52 | -8.615850e-47 |
| Msa0071640 | Msa0274940 | 0.839218 | 1.807467e-57 | -8.615850e-47 |
| Msa0072570 | Msa0274940 | 0.805147 | 1.536104e-49 | -8.615850e-47 |
| Msa0075370 | Msa0274940 | -0.811108 | 8.254199e-51 | -8.615850e-47 |
| Msa0079560 | Msa0274940 | 0.815929 | 7.185536e-52 | -8.615850e-47 |
| Msa0089540 | Msa0274940 | 0.843203 | 1.619171e-58 | -8.615850e-47 |
| Msa0094210 | Msa0274940 | 0.807984 | 3.868937e-50 | -8.615850e-47 |
| Msa0099090 | Msa0274940 | -0.826840 | 2.175456e-54 | -8.615850e-47 |
| Msa0127230 | Msa0274940 | 0.804967 | 1.675313e-49 | -8.615850e-47 |
| Msa0148000 | Msa0274940 | -0.813328 | 2.705614e-51 | -8.615850e-47 |
| Msa0154720 | Msa0274940 | -0.814053 | 1.874065e-51 | -8.615850e-47 |
| Msa0167800 | Msa0274940 | -0.820709 | 5.942005e-53 | -8.615850e-47 |
| Msa0167860 | Msa0274940 | 0.821531 | 3.842385e-53 | -8.615850e-47 |
| Msa0168320 | Msa0274940 | 0.836740 | 7.836811e-57 | -8.615850e-47 |
| Msa0169710 | Msa0274940 | 0.878585 | 2.494092e-69 | -8.615850e-47 |
| Msa0177940 | Msa0274940 | 0.828929 | 6.839189e-55 | -8.615850e-47 |
| Msa0182100 | Msa0274940 | 0.808783 | 2.613830e-50 | -8.615850e-47 |
| Msa0183840 | Msa0274940 | 0.843700 | 1.192432e-58 | -8.615850e-47 |
| Msa0188740 | Msa0274940 | 0.854778 | 9.810089e-62 | -8.615850e-47 |
| Msa0192050 | Msa0274940 | 0.807992 | 3.854638e-50 | -8.615850e-47 |
| Msa0192300 | Msa0274940 | 0.863722 | 2.032611e-64 | -8.615850e-47 |
| Msa0195030 | Msa0274940 | 0.974862 | 6.553219e-139 | -8.615850e-47 |
| Msa0225370 | Msa0274940 | -0.819024 | 1.442631e-52 | -8.615850e-47 |
| Msa0233550 | Msa0274940 | 0.822312 | 2.533848e-53 | -8.615850e-47 |
| Msa0237180 | Msa0274940 | 0.974318 | 6.033969e-138 | -8.615850e-47 |
| Msa0239420 | Msa0274940 | 0.871898 | 4.810223e-67 | -8.615850e-47 |
| Msa0266380 | Msa0274940 | -0.846841 | 1.685281e-59 | -8.615850e-47 |
| Msa0270160 | Msa0274940 | 0.847696 | 9.818817e-60 | -8.615850e-47 |
| Msa0274940 | Msa0281330 | 0.817789 | 2.747808e-52 | -8.615850e-47 |
| Msa0274940 | Msa0281370 | 0.852528 | 4.352510e-61 | -8.615850e-47 |
| Msa0274940 | Msa0301250 | 0.857952 | 1.149170e-62 | -8.615850e-47 |
| Msa0274940 | Msa0313060 | 0.871703 | 5.583985e-67 | -8.615850e-47 |
| Msa0274940 | Msa0315660 | 0.978758 | 1.683834e-146 | -8.615850e-47 |
| Msa0274940 | Msa0317300 | 0.811382 | 7.198033e-51 | -8.615850e-47 |
| Msa0274940 | Msa0340560 | 0.801996 | 6.917228e-49 | -8.615850e-47 |
| Msa0274940 | Msa0341860 | -0.853147 | 2.894975e-61 | -8.615850e-47 |
| Msa0274940 | Msa0370350 | -0.839339 | 1.681518e-57 | -8.615850e-47 |
| Msa0274940 | Msa0371490 | 0.846174 | 2.563742e-59 | -8.615850e-47 |
| Msa0274940 | Msa0376850 | 0.868409 | 6.669495e-66 | -8.615850e-47 |
| Msa0274940 | Msa0377370 | 0.808445 | 3.085809e-50 | -8.615850e-47 |
| Msa0274940 | Msa0377520 | 0.836720 | 7.930081e-57 | -8.615850e-47 |
| Msa0274940 | Msa0378620 | -0.846587 | 1.978069e-59 | -8.615850e-47 |
| Msa0274940 | Msa0380590 | 0.841281 | 5.226958e-58 | -8.615850e-47 |
| Msa0274940 | Msa0382670 | 0.863135 | 3.089941e-64 | -8.615850e-47 |
| Msa0274940 | Msa0385030 | 0.826149 | 3.179135e-54 | -8.615850e-47 |
| Msa0274940 | Msa0387290 | 0.815763 | 7.825976e-52 | -8.615850e-47 |
| Msa0274940 | Msa0388520 | 0.839211 | 1.814276e-57 | -8.615850e-47 |
| Msa0274940 | Msa0389800 | 0.855743 | 5.139880e-62 | -8.615850e-47 |
| Msa0274940 | Msa0416470 | 0.854006 | 1.640071e-61 | -8.615850e-47 |
| Msa0274940 | Msa0417850 | -0.822901 | 1.848001e-53 | -8.615850e-47 |
| Msa0274940 | Msa0425020 | -0.820105 | 8.174789e-53 | -8.615850e-47 |
| Msa0274940 | Msa0426090 | 0.800817 | 1.206312e-48 | -8.615850e-47 |
| Msa0274940 | Msa0426940 | 0.818602 | 1.799609e-52 | -8.615850e-47 |
| Msa0274940 | Msa0430130 | 0.831210 | 1.899229e-55 | -8.615850e-47 |
| Msa0274940 | Msa0432260 | -0.851465 | 8.721961e-61 | -8.615850e-47 |
| Msa0274940 | Msa0436830 | -0.833936 | 4.005555e-56 | -8.615850e-47 |
| Msa0274940 | Msa0467250 | 0.809955 | 1.464682e-50 | -8.615850e-47 |
| Msa0274940 | Msa0468140 | 0.833276 | 5.853994e-56 | -8.615850e-47 |
| Msa0274940 | Msa0472480 | 0.803721 | 3.045008e-49 | -8.615850e-47 |
| Msa0274940 | Msa0476730 | -0.852350 | 4.890310e-61 | -8.615850e-47 |
| Msa0274940 | Msa0480940 | 0.809826 | 1.561841e-50 | -8.615850e-47 |
| Msa0274940 | Msa0482760 | 0.805263 | 1.452651e-49 | -8.615850e-47 |
| Msa0274940 | Msa0485220 | 0.807702 | 4.441962e-50 | -8.615850e-47 |
| Msa0274940 | Msa0500420 | 0.842899 | 1.950411e-58 | -8.615850e-47 |
| Msa0274940 | Msa0511760 | 0.844778 | 6.122327e-59 | -8.615850e-47 |
| Msa0274940 | Msa0516830 | 0.867316 | 1.496979e-65 | -8.615850e-47 |
| Msa0274940 | Msa0521100 | -0.828025 | 1.130665e-54 | -8.615850e-47 |
| Msa0274940 | Msa0521730 | 0.824988 | 5.987463e-54 | -8.615850e-47 |
| Msa0274940 | Msa0526490 | -0.812612 | 3.884584e-51 | -8.615850e-47 |
| Msa0274940 | Msa0540160 | -0.847237 | 1.313336e-59 | -8.615850e-47 |
| Msa0274940 | Msa0547920 | 0.820536 | 6.512168e-53 | -8.615850e-47 |
| Msa0274940 | Msa0573550 | 0.875831 | 2.258707e-68 | -8.615850e-47 |
| Msa0274940 | Msa0574780 | 0.842506 | 2.480386e-58 | -8.615850e-47 |
| Msa0274940 | Msa0597240 | 0.832810 | 7.644994e-56 | -8.615850e-47 |
| Msa0274940 | Msa0602900 | 0.827015 | 1.975621e-54 | -8.615850e-47 |
| Msa0274940 | Msa0604890 | -0.801246 | 9.858936e-49 | -8.615850e-47 |
| Msa0274940 | Msa0605890 | 0.804255 | 2.358135e-49 | -8.615850e-47 |
| Msa0274940 | Msa0609120 | 0.828462 | 8.871108e-55 | -8.615850e-47 |
| Msa0274940 | Msa0619230 | 0.846295 | 2.376528e-59 | -8.615850e-47 |
| Msa0274940 | Msa0621190 | 0.856331 | 3.457835e-62 | -8.615850e-47 |
| Msa0274940 | Msa0643960 | 0.825015 | 5.901984e-54 | -8.615850e-47 |
| Msa0274940 | Msa0646180 | -0.820385 | 7.054146e-53 | -8.615850e-47 |
| Msa0274940 | Msa0656450 | 0.813078 | 3.070994e-51 | -8.615850e-47 |
| Msa0274940 | Msa0659020 | -0.802020 | 6.840146e-49 | -8.615850e-47 |
| Msa0274940 | Msa0686550 | 0.803115 | 4.065556e-49 | -8.615850e-47 |
| Msa0274940 | Msa0691760 | 0.838482 | 2.801166e-57 | -8.615850e-47 |
| Msa0274940 | Msa0709380 | 0.814970 | 1.174346e-51 | -8.615850e-47 |
| Msa0274940 | Msa0733240 | -0.802604 | 5.184871e-49 | -8.615850e-47 |
| Msa0274940 | Msa0758420 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa0274940 | Msa0790450 | 0.854887 | 9.125517e-62 | -8.615850e-47 |
| Msa0274940 | Msa0818900 | 0.801663 | 8.097196e-49 | -8.615850e-47 |
| Msa0274940 | Msa0834220 | 0.812314 | 4.511251e-51 | -8.615850e-47 |
| Msa0274940 | Msa0846900 | 0.816592 | 5.108929e-52 | -8.615850e-47 |
| Msa0274940 | Msa0880050 | 0.857127 | 2.016540e-62 | -8.615850e-47 |
| Msa0274940 | Msa0881240 | 0.829870 | 4.041037e-55 | -8.615850e-47 |
| Msa0274940 | Msa0929700 | 0.876552 | 1.275487e-68 | -8.615850e-47 |
| Msa0274940 | Msa0930360 | 0.828389 | 9.238651e-55 | -8.615850e-47 |
| Msa0274940 | Msa0930790 | 0.825640 | 4.199477e-54 | -8.615850e-47 |
| Msa0274940 | Msa0982260 | 0.856504 | 3.077208e-62 | -8.615850e-47 |
| Msa0274940 | Msa1001620 | 0.801514 | 8.685409e-49 | -8.615850e-47 |
| Msa0274940 | Msa1025200 | 0.830331 | 3.118690e-55 | -8.615850e-47 |
| Msa0274940 | Msa1025220 | 0.840996 | 6.208903e-58 | -8.615850e-47 |
| Msa0274940 | Msa1026710 | 0.817641 | 2.968343e-52 | -8.615850e-47 |
| Msa0274940 | Msa1041830 | 0.830709 | 2.521008e-55 | -8.615850e-47 |
| Msa0274940 | Msa1047020 | 0.821366 | 4.194628e-53 | -8.615850e-47 |
| Msa0274940 | Msa1075840 | -0.804219 | 2.399788e-49 | -8.615850e-47 |
| Msa0274940 | Msa1076200 | 0.811554 | 6.607022e-51 | -8.615850e-47 |
| Msa0274940 | Msa1078480 | 0.827783 | 1.292711e-54 | -8.615850e-47 |
| Msa0274940 | Msa1078640 | 0.832909 | 7.221970e-56 | -8.615850e-47 |
| Msa0274940 | Msa1082050 | 0.804143 | 2.488289e-49 | -8.615850e-47 |
| Msa0274940 | Msa1093190 | -0.804446 | 2.151479e-49 | -8.615850e-47 |
| Msa0274940 | Msa1102090 | 0.838402 | 2.938543e-57 | -8.615850e-47 |
| Msa0274940 | Msa1116940 | 0.806948 | 6.418538e-50 | -8.615850e-47 |
| Msa0274940 | Msa1124980 | 0.858531 | 7.725841e-63 | -8.615850e-47 |
| Msa0274940 | Msa1126690 | 0.826011 | 3.427745e-54 | -8.615850e-47 |
| Msa0274940 | Msa1152860 | 0.821448 | 4.016035e-53 | -8.615850e-47 |
| Msa0274940 | Msa1156830 | 0.816029 | 6.827313e-52 | -8.615850e-47 |
| Msa0274940 | Msa1163320 | 0.829316 | 5.511384e-55 | -8.615850e-47 |
| Msa0274940 | Msa1167360 | 0.858460 | 8.116238e-63 | -8.615850e-47 |
| Msa0274940 | Msa1207880 | 0.807105 | 5.945343e-50 | -8.615850e-47 |
| Msa0274940 | Msa1220580 | 0.804785 | 1.828079e-49 | -8.615850e-47 |
| Msa0274940 | Msa1225040 | 0.847230 | 1.318571e-59 | -8.615850e-47 |
| Msa0274940 | Msa1235950 | 0.846986 | 1.538400e-59 | -8.615850e-47 |
| Msa0274940 | Msa1235980 | 0.851132 | 1.082818e-60 | -8.615850e-47 |
| Msa0274940 | Msa1237040 | 0.853366 | 2.505842e-61 | -8.615850e-47 |
| Msa0274940 | Msa1239870 | 0.803390 | 3.566815e-49 | -8.615850e-47 |
| Msa0274940 | Msa1261970 | 0.822472 | 2.326120e-53 | -8.615850e-47 |
| Msa0274940 | Msa1284800 | 0.828417 | 9.097500e-55 | -8.615850e-47 |
| Msa0274940 | Msa1296090 | 0.804189 | 2.434624e-49 | -8.615850e-47 |
| Msa0274940 | Msa1307730 | 0.854662 | 1.059869e-61 | -8.615850e-47 |
| Msa0274940 | Msa1316100 | 0.824315 | 8.629459e-54 | -8.615850e-47 |
| Msa0274940 | Msa1317390 | 0.841971 | 3.437651e-58 | -8.615850e-47 |
| Msa0274940 | Msa1329930 | 0.805809 | 1.115577e-49 | -8.615850e-47 |
| Msa0274940 | Msa1334560 | 0.812380 | 4.365111e-51 | -8.615850e-47 |
| Msa0274940 | Msa1347610 | 0.827862 | 1.237158e-54 | -8.615850e-47 |
| Msa0274940 | Msa1349870 | 0.809709 | 1.655102e-50 | -8.615850e-47 |
| Msa0274940 | Msa1351020 | 0.837936 | 3.873641e-57 | -8.615850e-47 |
| Msa0274940 | Msa1359880 | -0.819011 | 1.452687e-52 | -8.615850e-47 |
| Msa0274940 | Msa1363270 | -0.812152 | 4.894989e-51 | -8.615850e-47 |
| Msa0274940 | Msa1363910 | 0.811637 | 6.337750e-51 | -8.615850e-47 |
| Msa0274940 | Msa1387750 | 0.826963 | 2.032599e-54 | -8.615850e-47 |
| Msa0274940 | Msa1389340 | 0.810525 | 1.103972e-50 | -8.615850e-47 |
| Msa0274940 | Msa1390760 | 0.849672 | 2.781482e-60 | -8.615850e-47 |
| Msa0274940 | Msa1398310 | -0.810759 | 9.824721e-51 | -8.615850e-47 |
| Msa0274940 | Msa1403520 | 0.831594 | 1.527730e-55 | -8.615850e-47 |
| Msa0274940 | Msa1407550 | 0.831160 | 1.954147e-55 | -8.615850e-47 |
| Msa0274940 | Msa1413570 | 0.816016 | 6.871663e-52 | -8.615850e-47 |
| Msa0274940 | Msa1423050 | 0.853722 | 1.980723e-61 | -8.615850e-47 |
| Msa0274940 | Msa1432310 | 0.812991 | 3.208739e-51 | -8.615850e-47 |
| Msa0274940 | Msa1446510 | 0.831847 | 1.323180e-55 | -8.615850e-47 |
| Msa0274940 | Msa1448840 | -0.824725 | 6.907747e-54 | -8.615850e-47 |
| Msa0274940 | Msa1450560 | 0.854552 | 1.141153e-61 | -8.615850e-47 |
| Msa0274940 | Msa1465700 | 0.857912 | 1.181277e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274940 | MtrunA17_Chr2g0286471 | 96.403 | 139 | 5 | 0 | 1 | 139 | 1 | 139 | 1.09e-95 | 271 |
| Msa0274940 | MtrunA17_Chr2g0286481 | 94.245 | 139 | 8 | 0 | 1 | 139 | 1 | 139 | 1.37e-84 | 243 |
| Msa0274940 | MtrunA17_Chr8g0385881 | 46.853 | 143 | 66 | 4 | 1 | 138 | 1 | 138 | 6.85e-37 | 123 |
| Msa0274940 | MtrunA17_Chr1g0191251 | 66.667 | 78 | 21 | 2 | 58 | 133 | 12 | 86 | 3.14e-25 | 92.0 |
| Msa0274940 | MtrunA17_Chr4g0066661 | 80.435 | 46 | 9 | 0 | 94 | 139 | 25 | 70 | 2.72e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0274940 | AT4G25050.1 | 54.348 | 138 | 56 | 2 | 1 | 138 | 1 | 131 | 3.38e-40 | 131 |
| Msa0274940 | AT1G54630.1 | 51.049 | 143 | 58 | 3 | 1 | 139 | 1 | 135 | 6.24e-37 | 123 |
| Msa0274940 | AT4G25050.2 | 50.000 | 150 | 56 | 3 | 1 | 138 | 1 | 143 | 2.93e-36 | 122 |
| Msa0274940 | AT1G54580.1 | 58.333 | 108 | 37 | 1 | 32 | 139 | 36 | 135 | 5.53e-36 | 120 |
| Msa0274940 | AT5G27200.1 | 64.773 | 88 | 31 | 0 | 51 | 138 | 50 | 137 | 2.28e-34 | 117 |
| Msa0274940 | AT3G05020.1 | 53.571 | 112 | 44 | 2 | 27 | 138 | 33 | 136 | 5.13e-34 | 116 |
| Msa0274940 | AT1G54630.2 | 45.000 | 100 | 49 | 2 | 1 | 99 | 1 | 95 | 1.38e-16 | 70.9 |
Find 62 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTTTCCCTTTCAATTA+AGG | 0.142430 | 2_3:+6803069 | Msa0274940:CDS |
| ACAGCAAATACTTGTGATTT+AGG | 0.200469 | 2_3:-6805473 | None:intergenic |
| GAGGCCTTACATGTCTATTT+TGG | 0.213090 | 2_3:+6805303 | Msa0274940:three_prime_UTR |
| ATGGGACTTGAGGAGGAATT+TGG | 0.306245 | 2_3:+6805177 | Msa0274940:CDS |
| CTTGAACGGTGGTGATGCTC+TGG | 0.312374 | 2_3:-6805224 | None:intergenic |
| TCAGATGATTCAACTGTTAC+TGG | 0.317385 | 2_3:+6803918 | Msa0274940:CDS |
| ACACTGAAGAATGTATTTAT+AGG | 0.333834 | 2_3:-6802575 | None:intergenic |
| GTATTATTGTAATTCTAATA+TGG | 0.336412 | 2_3:-6805401 | None:intergenic |
| CTCCCTCTCCAACCAATCTA+TGG | 0.340875 | 2_3:+6802720 | Msa0274940:CDS |
| CTCTTTGCTAGTTTAAGCCT+TGG | 0.348527 | 2_3:-6805280 | None:intergenic |
| TCAGTTTCCCTTTCAATTAA+GGG | 0.366831 | 2_3:+6803070 | Msa0274940:CDS |
| CACACCTTCTGCACAGTCTC+TGG | 0.366899 | 2_3:-6803867 | None:intergenic |
| GTTTCTTGTGCTAGGATCTC+TGG | 0.370772 | 2_3:+6803040 | Msa0274940:CDS |
| TAGTACAGTGTTTGTTGGTT+TGG | 0.374925 | 2_3:-6802542 | None:intergenic |
| ACATGAAACCGACGTCCTTT+TGG | 0.380510 | 2_3:-6803121 | None:intergenic |
| TTTGGCTGCAAAGCAATAGA+TGG | 0.381361 | 2_3:-6803103 | None:intergenic |
| CATTATAGTACAGTGTTTGT+TGG | 0.411296 | 2_3:-6802547 | None:intergenic |
| TATTGCAGCATACCATAGAT+TGG | 0.430088 | 2_3:-6802732 | None:intergenic |
| ATTGAAAGGGAAACTGAACT+TGG | 0.450513 | 2_3:-6803064 | None:intergenic |
| GTTCCTTCCCTTAATTGAAA+GGG | 0.468703 | 2_3:-6803077 | None:intergenic |
| GAGTCTAAATTTACCGCACT+TGG | 0.469359 | 2_3:+6803942 | Msa0274940:CDS |
| AGTTCCTTCCCTTAATTGAA+AGG | 0.475850 | 2_3:-6803078 | None:intergenic |
| AGACATGGAGGTTGTGGTGA+TGG | 0.479192 | 2_3:-6802692 | None:intergenic |
| AGATCTCTCTCTCTTTCCAA+TGG | 0.488563 | 2_3:+6802666 | Msa0274940:exon |
| TCTATTGCTTTGCAGCCAAA+AGG | 0.491642 | 2_3:+6803106 | Msa0274940:CDS |
| ACTCTGATTCGATACTTTCG+AGG | 0.498922 | 2_3:-6802497 | None:intergenic |
| TGACATAGTCAAGAAACAAT+TGG | 0.515237 | 2_3:+6803890 | Msa0274940:CDS |
| AACTCCAAAATAGACATGTA+AGG | 0.521710 | 2_3:-6805307 | None:intergenic |
| GCAGCATACCATAGATTGGT+TGG | 0.525411 | 2_3:-6802728 | None:intergenic |
| GATGAGAGACATGGAGGTTG+TGG | 0.526450 | 2_3:-6802698 | None:intergenic |
| TTGAACGGTGGTGATGCTCT+GGG | 0.536178 | 2_3:-6805223 | None:intergenic |
| GTGCAGGTTGAGATTGTGAT+GGG | 0.538445 | 2_3:+6805159 | Msa0274940:intron |
| AGTGTTTGTTGGTTTGGTTG+AGG | 0.538737 | 2_3:-6802536 | None:intergenic |
| CGAAAGTATCGAATCAGAGT+TGG | 0.541133 | 2_3:+6802500 | Msa0274940:five_prime_UTR |
| TAACAGTTGAATCATCTGAC+AGG | 0.543284 | 2_3:-6803914 | None:intergenic |
| ATCTGAGATCTAAGAAAGGA+CGG | 0.544965 | 2_3:-6802647 | None:intergenic |
| TAACAAACACTCACACGTGC+CGG | 0.545966 | 2_3:+6802474 | Msa0274940:five_prime_UTR |
| TGTGCAGGTTGAGATTGTGA+TGG | 0.550404 | 2_3:+6805158 | Msa0274940:intron |
| TTTCCCTTTCAATTAAGGGA+AGG | 0.563082 | 2_3:+6803074 | Msa0274940:CDS |
| TGACAAGCTTCTTGAGACCA+AGG | 0.563747 | 2_3:+6805263 | Msa0274940:CDS |
| TACCATAGATTGGTTGGAGA+GGG | 0.564538 | 2_3:-6802722 | None:intergenic |
| GAGGGAGATGAGAGACATGG+AGG | 0.574209 | 2_3:-6802704 | None:intergenic |
| GGAGGAATTTGGCATTAGTG+TGG | 0.577421 | 2_3:+6805188 | Msa0274940:CDS |
| AGAGATCTGAGATCTAAGAA+AGG | 0.577757 | 2_3:-6802651 | None:intergenic |
| CATGTCAGCAGCTTCTTGAA+CGG | 0.584545 | 2_3:-6805238 | None:intergenic |
| GGAGAGGGAGATGAGAGACA+TGG | 0.587645 | 2_3:-6802707 | None:intergenic |
| GTCAGCAGCTTCTTGAACGG+TGG | 0.593457 | 2_3:-6805235 | None:intergenic |
| TGAGATTGTGATGGGACTTG+AGG | 0.596018 | 2_3:+6805167 | Msa0274940:CDS |
| TAAACCAGAGACTGTGCAGA+AGG | 0.602913 | 2_3:+6803863 | Msa0274940:CDS |
| TGATTCGATACTTTCGAGGC+CGG | 0.603111 | 2_3:-6802493 | None:intergenic |
| GATTGTGATGGGACTTGAGG+AGG | 0.609784 | 2_3:+6805170 | Msa0274940:CDS |
| GGCTTAAACTAGCAAAGAGG+AGG | 0.615054 | 2_3:+6805284 | Msa0274940:exon |
| TTGAAAGGGAAACTGAACTT+GGG | 0.615907 | 2_3:-6803063 | None:intergenic |
| CTTTGCAGCCAAAAGGACGT+CGG | 0.624330 | 2_3:+6803113 | Msa0274940:CDS |
| TGGAGCTGATTCTCTTGACA+CGG | 0.626251 | 2_3:+6803962 | Msa0274940:CDS |
| ATACCATAGATTGGTTGGAG+AGG | 0.645014 | 2_3:-6802723 | None:intergenic |
| AACAGTTGAATCATCTGACA+GGG | 0.652394 | 2_3:-6803913 | None:intergenic |
| CAAGGCTTAAACTAGCAAAG+AGG | 0.660316 | 2_3:+6805281 | Msa0274940:exon |
| GTTGTGGTGATGGAAGCCAT+TGG | 0.668457 | 2_3:-6802682 | None:intergenic |
| AAGAGAATCAGCTCCAAGTG+CGG | 0.701784 | 2_3:-6803955 | None:intergenic |
| ATGGTCCAGAAAATATCTAG+CGG | 0.709404 | 2_3:-6805382 | None:intergenic |
| TCGGTTTCATGTCACATGCG+CGG | 0.715418 | 2_3:+6803132 | Msa0274940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAGTATTTTGTAAAAAA+AGG | - | chr2_3:6804878-6804897 | None:intergenic | 10.0% |
| !! | AAAGATTAAGAAAATGAAAA+GGG | - | chr2_3:6802760-6802779 | None:intergenic | 15.0% |
| !! | AAAAGATTAAGAAAATGAAA+AGG | - | chr2_3:6802761-6802780 | None:intergenic | 15.0% |
| !! | AGAACTAAAACAAAATTATT+GGG | + | chr2_3:6803760-6803779 | Msa0274940:intron | 15.0% |
| !! | TTATATAGATTACATGAAAA+TGG | + | chr2_3:6804787-6804806 | Msa0274940:intron | 15.0% |
| !! | TTGAAATGTAAGTAAATAAT+CGG | - | chr2_3:6805134-6805153 | None:intergenic | 15.0% |
| !! | GTATTATTGTAATTCTAATA+TGG | - | chr2_3:6805404-6805423 | None:intergenic | 15.0% |
| !! | AAGATTAAGAAAATGAAAAG+GGG | - | chr2_3:6802759-6802778 | None:intergenic | 20.0% |
| !!! | TTTTAGTGGTTAGATTAATT+TGG | + | chr2_3:6802989-6803008 | Msa0274940:intron | 20.0% |
| !!! | TAGATTAATTTGGTTATTGT+TGG | + | chr2_3:6802999-6803018 | Msa0274940:intron | 20.0% |
| !! | ATACAACTCTATAAAGATTA+TGG | - | chr2_3:6803170-6803189 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTGACATGTT+TGG | + | chr2_3:6803258-6803277 | Msa0274940:intron | 20.0% |
| !! | CAATAGTTATTATAACCATA+AGG | - | chr2_3:6803719-6803738 | None:intergenic | 20.0% |
| !!! | ATAATTTTGTTTTAGTTCTC+TGG | - | chr2_3:6803759-6803778 | None:intergenic | 20.0% |
| !! | GAGAACTAAAACAAAATTAT+TGG | + | chr2_3:6803759-6803778 | Msa0274940:intron | 20.0% |
| !! | ATCATCTTAAATATCACAAA+AGG | - | chr2_3:6803811-6803830 | None:intergenic | 20.0% |
| !! | TTAAGATGATATAACAAGAA+TGG | + | chr2_3:6803821-6803840 | Msa0274940:intron | 20.0% |
| !! | AACATAAGTATTTGATGTTA+TGG | + | chr2_3:6804349-6804368 | Msa0274940:intron | 20.0% |
| !!! | TTTAGTTTTTTTTCTTTCCT+TGG | + | chr2_3:6804606-6804625 | Msa0274940:intron | 20.0% |
| !!! | CTATATAAGCTATTTTCATA+AGG | - | chr2_3:6804775-6804794 | None:intergenic | 20.0% |
| !! | TGAAATGTAAGTAAATAATC+GGG | - | chr2_3:6805133-6805152 | None:intergenic | 20.0% |
| ! | ACACTGAAGAATGTATTTAT+AGG | - | chr2_3:6802578-6802597 | None:intergenic | 25.0% |
| !! | AATTATTCACCCTTGTTTAT+TGG | + | chr2_3:6802789-6802808 | Msa0274940:intron | 25.0% |
| ! | TTAACAGATCCAATAAACAA+GGG | - | chr2_3:6802801-6802820 | None:intergenic | 25.0% |
| ! | TTTAACAGATCCAATAAACA+AGG | - | chr2_3:6802802-6802821 | None:intergenic | 25.0% |
| !! | ATCACTAATCATAATTTGTC+AGG | - | chr2_3:6802936-6802955 | None:intergenic | 25.0% |
| ! | TTAGTGATGTGTAATGTTTA+TGG | + | chr2_3:6802948-6802967 | Msa0274940:intron | 25.0% |
| !!! | TGATCCTAATTATGTTTTAG+TGG | + | chr2_3:6802975-6802994 | Msa0274940:intron | 25.0% |
| ! | CTAACCACTAAAACATAATT+AGG | - | chr2_3:6802982-6803001 | None:intergenic | 25.0% |
| ! | ATAATTGATCTTGACATGTT+TGG | + | chr2_3:6803188-6803207 | Msa0274940:intron | 25.0% |
| ! | AAAATTGATCTTGACATGTT+TGG | + | chr2_3:6803223-6803242 | Msa0274940:intron | 25.0% |
| ! | ATATACATTCATGTAAGAGT+GGG | - | chr2_3:6803397-6803416 | None:intergenic | 25.0% |
| ! | TATATACATTCATGTAAGAG+TGG | - | chr2_3:6803398-6803417 | None:intergenic | 25.0% |
| ! | AGATGATATAACTAAGTGTT+TGG | - | chr2_3:6803513-6803532 | None:intergenic | 25.0% |
| !! | ATTTTGTAATGCAGATAACT+CGG | - | chr2_3:6803638-6803657 | None:intergenic | 25.0% |
| !! | TTGAAGATTTTCATTTCTGT+TGG | + | chr2_3:6803679-6803698 | Msa0274940:intron | 25.0% |
| ! | TTATCTACTAATTACTGTAG+TGG | + | chr2_3:6803999-6804018 | Msa0274940:intron | 25.0% |
| ! | TGTATAGTTCAAATATCAAG+TGG | - | chr2_3:6804106-6804125 | None:intergenic | 25.0% |
| ! | AGAAACTAATAACCACTAAA+AGG | - | chr2_3:6804324-6804343 | None:intergenic | 25.0% |
| !!! | AAAATGGATTGACTTGTTAT+TGG | + | chr2_3:6804803-6804822 | Msa0274940:intron | 25.0% |
| ! | GTGATTATTTGATTCATATC+AGG | + | chr2_3:6805066-6805085 | Msa0274940:intron | 25.0% |
| !!! | TTTTTTTGTTATGCGATCTT+CGG | + | chr2_3:6805330-6805349 | Msa0274940:three_prime_UTR | 25.0% |
| !! | AGGAGCAAATTTCATTTTAT+AGG | - | chr2_3:6805456-6805475 | None:intergenic | 25.0% |
| CATTATAGTACAGTGTTTGT+TGG | - | chr2_3:6802550-6802569 | None:intergenic | 30.0% | |
| !!! | TTATCTGTTTTGATGCTTGT+CGG | + | chr2_3:6802861-6802880 | Msa0274940:intron | 30.0% |
| TTGGATGTGAAAACAAAAAC+AGG | + | chr2_3:6803018-6803037 | Msa0274940:intron | 30.0% | |
| TTCAGTTTCCCTTTCAATTA+AGG | + | chr2_3:6803069-6803088 | Msa0274940:CDS | 30.0% | |
| TCAGTTTCCCTTTCAATTAA+GGG | + | chr2_3:6803070-6803089 | Msa0274940:CDS | 30.0% | |
| TTCTAACTTGAAGCTAGAAT+TGG | + | chr2_3:6803324-6803343 | Msa0274940:intron | 30.0% | |
| TGGGCTAATCTATAAATTTG+AGG | - | chr2_3:6803378-6803397 | None:intergenic | 30.0% | |
| !! | CATTTTTCGTCTTTAGTTTC+TGG | + | chr2_3:6803591-6803610 | Msa0274940:intron | 30.0% |
| TCAACAGATAACAACAAAAC+AGG | - | chr2_3:6803663-6803682 | None:intergenic | 30.0% | |
| TGACATAGTCAAGAAACAAT+TGG | + | chr2_3:6803890-6803909 | Msa0274940:CDS | 30.0% | |
| AGAGACAAAAATAACAGGAA+GGG | - | chr2_3:6804162-6804181 | None:intergenic | 30.0% | |
| AGAAGAGAGACAAAAATAAC+AGG | - | chr2_3:6804167-6804186 | None:intergenic | 30.0% | |
| TAAGTTCTCATATTTGACCA+TGG | + | chr2_3:6804259-6804278 | Msa0274940:intron | 30.0% | |
| ! | ACTTCAGTACTGAAATAAAC+TGG | + | chr2_3:6804393-6804412 | Msa0274940:intron | 30.0% |
| !! | GCTATTTTCATAAGGTATCT+AGG | - | chr2_3:6804767-6804786 | None:intergenic | 30.0% |
| TAAAAAACATCATGTCAAGC+AGG | - | chr2_3:6804945-6804964 | None:intergenic | 30.0% | |
| !!! | TTACATTTCAAGTTTTGTGC+AGG | + | chr2_3:6805143-6805162 | Msa0274940:intron | 30.0% |
| AACTCCAAAATAGACATGTA+AGG | - | chr2_3:6805310-6805329 | None:intergenic | 30.0% | |
| ACAGCAAATACTTGTGATTT+AGG | - | chr2_3:6805476-6805495 | None:intergenic | 30.0% | |
| ! | TAGTACAGTGTTTGTTGGTT+TGG | - | chr2_3:6802545-6802564 | None:intergenic | 35.0% |
| ! | ATCTGAGATCTAAGAAAGGA+CGG | - | chr2_3:6802650-6802669 | None:intergenic | 35.0% |
| ! | AGAGATCTGAGATCTAAGAA+AGG | - | chr2_3:6802654-6802673 | None:intergenic | 35.0% |
| TATTGCAGCATACCATAGAT+TGG | - | chr2_3:6802735-6802754 | None:intergenic | 35.0% | |
| TCGGTGTAATTTGGATATGT+TGG | + | chr2_3:6802880-6802899 | Msa0274940:intron | 35.0% | |
| AAAAACAGGTTTCTTGTGCT+AGG | + | chr2_3:6803032-6803051 | Msa0274940:intron | 35.0% | |
| TTGAAAGGGAAACTGAACTT+GGG | - | chr2_3:6803066-6803085 | None:intergenic | 35.0% | |
| ATTGAAAGGGAAACTGAACT+TGG | - | chr2_3:6803067-6803086 | None:intergenic | 35.0% | |
| TTTCCCTTTCAATTAAGGGA+AGG | + | chr2_3:6803074-6803093 | Msa0274940:CDS | 35.0% | |
| GTTCCTTCCCTTAATTGAAA+GGG | - | chr2_3:6803080-6803099 | None:intergenic | 35.0% | |
| AGTTCCTTCCCTTAATTGAA+AGG | - | chr2_3:6803081-6803100 | None:intergenic | 35.0% | |
| TTGAGGCTCAAATTCAATTG+TGG | - | chr2_3:6803361-6803380 | None:intergenic | 35.0% | |
| AGTATCTTTATGCTTAGCCT+GGG | + | chr2_3:6803549-6803568 | Msa0274940:intron | 35.0% | |
| CAGATAACTCGGTACAAATA+TGG | - | chr2_3:6803627-6803646 | None:intergenic | 35.0% | |
| GAGTTATCAATGATGCCTTA+TGG | + | chr2_3:6803701-6803720 | Msa0274940:intron | 35.0% | |
| ATTATTGGGCAGTTGTAATG+TGG | + | chr2_3:6803774-6803793 | Msa0274940:intron | 35.0% | |
| ! | AATGGACGTTAATTTTGTGC+AGG | + | chr2_3:6803839-6803858 | Msa0274940:intron | 35.0% |
| AACAGTTGAATCATCTGACA+GGG | - | chr2_3:6803916-6803935 | None:intergenic | 35.0% | |
| TAACAGTTGAATCATCTGAC+AGG | - | chr2_3:6803917-6803936 | None:intergenic | 35.0% | |
| TCAGATGATTCAACTGTTAC+TGG | + | chr2_3:6803918-6803937 | Msa0274940:CDS | 35.0% | |
| GAGAGACAAAAATAACAGGA+AGG | - | chr2_3:6804163-6804182 | None:intergenic | 35.0% | |
| ! | TCTCTCTTCTCATGATTTGT+TGG | + | chr2_3:6804177-6804196 | Msa0274940:intron | 35.0% |
| AAAGGATGATCATGGATTTC+AGG | - | chr2_3:6804306-6804325 | None:intergenic | 35.0% | |
| ! | ATCCATGATCATCCTTTTAG+TGG | + | chr2_3:6804309-6804328 | Msa0274940:intron | 35.0% |
| AACCACTAAAAGGATGATCA+TGG | - | chr2_3:6804314-6804333 | None:intergenic | 35.0% | |
| ATCAGAGACGCAACAAATAT+AGG | - | chr2_3:6804495-6804514 | None:intergenic | 35.0% | |
| GTACGGGCATATAGAAATAT+AGG | - | chr2_3:6804996-6805015 | None:intergenic | 35.0% | |
| TCATATAGCTCAAGCAGTAA+GGG | - | chr2_3:6805028-6805047 | None:intergenic | 35.0% | |
| ATCATATAGCTCAAGCAGTA+AGG | - | chr2_3:6805029-6805048 | None:intergenic | 35.0% | |
| GCTTGAGCTATATGATCAAA+TGG | + | chr2_3:6805033-6805052 | Msa0274940:intron | 35.0% | |
| AGGAAAATCAAAACAGTGTC+TGG | + | chr2_3:6805086-6805105 | Msa0274940:intron | 35.0% | |
| ! | TGTAACCGCTAGATATTTTC+TGG | + | chr2_3:6805377-6805396 | Msa0274940:three_prime_UTR | 35.0% |
| ATGGTCCAGAAAATATCTAG+CGG | - | chr2_3:6805385-6805404 | None:intergenic | 35.0% | |
| ! | ACTCTGATTCGATACTTTCG+AGG | - | chr2_3:6802500-6802519 | None:intergenic | 40.0% |
| !! | CGAAAGTATCGAATCAGAGT+TGG | + | chr2_3:6802500-6802519 | Msa0274940:five_prime_UTR | 40.0% |
| !!! | TTGGTTTGGTTGAGGTTTTG+AGG | - | chr2_3:6802531-6802550 | None:intergenic | 40.0% |
| !! | AGTGTTTGTTGGTTTGGTTG+AGG | - | chr2_3:6802539-6802558 | None:intergenic | 40.0% |
| AGATCTCTCTCTCTTTCCAA+TGG | + | chr2_3:6802666-6802685 | Msa0274940:exon | 40.0% | |
| ! | TACCATAGATTGGTTGGAGA+GGG | - | chr2_3:6802725-6802744 | None:intergenic | 40.0% |
| ! | ATACCATAGATTGGTTGGAG+AGG | - | chr2_3:6802726-6802745 | None:intergenic | 40.0% |
| TGATGCTTGTCGGTGTAATT+TGG | + | chr2_3:6802871-6802890 | Msa0274940:intron | 40.0% | |
| TTTGGCTGCAAAGCAATAGA+TGG | - | chr2_3:6803106-6803125 | None:intergenic | 40.0% | |
| TCTATTGCTTTGCAGCCAAA+AGG | + | chr2_3:6803106-6803125 | Msa0274940:CDS | 40.0% | |
| AGGCTCAAATTCAATTGTGG+AGG | - | chr2_3:6803358-6803377 | None:intergenic | 40.0% | |
| GAGTATCTTTATGCTTAGCC+TGG | + | chr2_3:6803548-6803567 | Msa0274940:intron | 40.0% | |
| ! | TTTATGCTTAGCCTGGGTTT+TGG | + | chr2_3:6803555-6803574 | Msa0274940:intron | 40.0% |
| GAGTCTAAATTTACCGCACT+TGG | + | chr2_3:6803942-6803961 | Msa0274940:CDS | 40.0% | |
| !! | TCATGATTTGTTGGAGCAAG+AGG | + | chr2_3:6804186-6804205 | Msa0274940:intron | 40.0% |
| TTTCTTTCCTTGGTTGTCTG+AGG | + | chr2_3:6804616-6804635 | Msa0274940:intron | 40.0% | |
| TTCTTTCCTTGGTTGTCTGA+GGG | + | chr2_3:6804617-6804636 | Msa0274940:intron | 40.0% | |
| TGTTTATCCAAACAGAGTCC+TGG | + | chr2_3:6804912-6804931 | Msa0274940:intron | 40.0% | |
| AGTAAGGGTCGTGTAATGTA+CGG | - | chr2_3:6805013-6805032 | None:intergenic | 40.0% | |
| ! | CTCTTTGCTAGTTTAAGCCT+TGG | - | chr2_3:6805283-6805302 | None:intergenic | 40.0% |
| CAAGGCTTAAACTAGCAAAG+AGG | + | chr2_3:6805281-6805300 | Msa0274940:exon | 40.0% | |
| ! | GAGGCCTTACATGTCTATTT+TGG | + | chr2_3:6805303-6805322 | Msa0274940:three_prime_UTR | 40.0% |
| TAACAAACACTCACACGTGC+CGG | + | chr2_3:6802474-6802493 | Msa0274940:five_prime_UTR | 45.0% | |
| TGATTCGATACTTTCGAGGC+CGG | - | chr2_3:6802496-6802515 | None:intergenic | 45.0% | |
| GCAGCATACCATAGATTGGT+TGG | - | chr2_3:6802731-6802750 | None:intergenic | 45.0% | |
| GTTTCTTGTGCTAGGATCTC+TGG | + | chr2_3:6803040-6803059 | Msa0274940:CDS | 45.0% | |
| ! | ACATGAAACCGACGTCCTTT+TGG | - | chr2_3:6803124-6803143 | None:intergenic | 45.0% |
| !!! | TTAGCCTGGGTTTTGGATTG+TGG | + | chr2_3:6803562-6803581 | Msa0274940:intron | 45.0% |
| TAAACCAGAGACTGTGCAGA+AGG | + | chr2_3:6803863-6803882 | Msa0274940:CDS | 45.0% | |
| AAGAGAATCAGCTCCAAGTG+CGG | - | chr2_3:6803958-6803977 | None:intergenic | 45.0% | |
| ! | TGGAGCTGATTCTCTTGACA+CGG | + | chr2_3:6803962-6803981 | Msa0274940:CDS | 45.0% |
| GAGACTCGATTGACAATCAG+TGG | - | chr2_3:6804529-6804548 | None:intergenic | 45.0% | |
| AAAATGCCCTCAGACAACCA+AGG | - | chr2_3:6804626-6804645 | None:intergenic | 45.0% | |
| !!! | TTGGTTGTCTGAGGGCATTT+TGG | + | chr2_3:6804625-6804644 | Msa0274940:intron | 45.0% |
| ATACAGACCAGGACTCTGTT+TGG | - | chr2_3:6804922-6804941 | None:intergenic | 45.0% | |
| GTAAGGGTCGTGTAATGTAC+GGG | - | chr2_3:6805012-6805031 | None:intergenic | 45.0% | |
| ! | TGTGCAGGTTGAGATTGTGA+TGG | + | chr2_3:6805158-6805177 | Msa0274940:intron | 45.0% |
| ! | GTGCAGGTTGAGATTGTGAT+GGG | + | chr2_3:6805159-6805178 | Msa0274940:intron | 45.0% |
| ! | TGAGATTGTGATGGGACTTG+AGG | + | chr2_3:6805167-6805186 | Msa0274940:CDS | 45.0% |
| ATGGGACTTGAGGAGGAATT+TGG | + | chr2_3:6805177-6805196 | Msa0274940:CDS | 45.0% | |
| GGAGGAATTTGGCATTAGTG+TGG | + | chr2_3:6805188-6805207 | Msa0274940:CDS | 45.0% | |
| CATGTCAGCAGCTTCTTGAA+CGG | - | chr2_3:6805241-6805260 | None:intergenic | 45.0% | |
| TGACAAGCTTCTTGAGACCA+AGG | + | chr2_3:6805263-6805282 | Msa0274940:CDS | 45.0% | |
| GGCTTAAACTAGCAAAGAGG+AGG | + | chr2_3:6805284-6805303 | Msa0274940:exon | 45.0% | |
| !! | GTTGTGGTGATGGAAGCCAT+TGG | - | chr2_3:6802685-6802704 | None:intergenic | 50.0% |
| AGACATGGAGGTTGTGGTGA+TGG | - | chr2_3:6802695-6802714 | None:intergenic | 50.0% | |
| GATGAGAGACATGGAGGTTG+TGG | - | chr2_3:6802701-6802720 | None:intergenic | 50.0% | |
| CTCCCTCTCCAACCAATCTA+TGG | + | chr2_3:6802720-6802739 | Msa0274940:CDS | 50.0% | |
| CTTTGCAGCCAAAAGGACGT+CGG | + | chr2_3:6803113-6803132 | Msa0274940:CDS | 50.0% | |
| TCGGTTTCATGTCACATGCG+CGG | + | chr2_3:6803132-6803151 | Msa0274940:CDS | 50.0% | |
| CTCTCCACAATCCAAAACCC+AGG | - | chr2_3:6803569-6803588 | None:intergenic | 50.0% | |
| TTGACCATGGCATCCTGTGA+TGG | + | chr2_3:6804272-6804291 | Msa0274940:intron | 50.0% | |
| TGACCATGGCATCCTGTGAT+GGG | + | chr2_3:6804273-6804292 | Msa0274940:intron | 50.0% | |
| AATCCCATCACAGGATGCCA+TGG | - | chr2_3:6804279-6804298 | None:intergenic | 50.0% | |
| TCAGGAGAGAATCCCATCAC+AGG | - | chr2_3:6804288-6804307 | None:intergenic | 50.0% | |
| TGTCAAGCAGGATACAGACC+AGG | - | chr2_3:6804933-6804952 | None:intergenic | 50.0% | |
| ! | GATTGTGATGGGACTTGAGG+AGG | + | chr2_3:6805170-6805189 | Msa0274940:CDS | 50.0% |
| ! | TTGAACGGTGGTGATGCTCT+GGG | - | chr2_3:6805226-6805245 | None:intergenic | 50.0% |
| GAGGGAGATGAGAGACATGG+AGG | - | chr2_3:6802707-6802726 | None:intergenic | 55.0% | |
| GGAGAGGGAGATGAGAGACA+TGG | - | chr2_3:6802710-6802729 | None:intergenic | 55.0% | |
| CACACCTTCTGCACAGTCTC+TGG | - | chr2_3:6803870-6803889 | None:intergenic | 55.0% | |
| ! | CTTGAACGGTGGTGATGCTC+TGG | - | chr2_3:6805227-6805246 | None:intergenic | 55.0% |
| GTCAGCAGCTTCTTGAACGG+TGG | - | chr2_3:6805238-6805257 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 6802472 | 6805515 | 6802472 | ID=Msa0274940;Name=Msa0274940 |
| chr2_3 | mRNA | 6802472 | 6805515 | 6802472 | ID=Msa0274940-mRNA-1;Parent=Msa0274940;Name=Msa0274940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=213|1|1|1|1|1|4|225|139 |
| chr2_3 | exon | 6802472 | 6802741 | 6802472 | ID=Msa0274940-mRNA-1:exon:3222;Parent=Msa0274940-mRNA-1 |
| chr2_3 | exon | 6803040 | 6803153 | 6803040 | ID=Msa0274940-mRNA-1:exon:3223;Parent=Msa0274940-mRNA-1 |
| chr2_3 | exon | 6803861 | 6803983 | 6803861 | ID=Msa0274940-mRNA-1:exon:3224;Parent=Msa0274940-mRNA-1 |
| chr2_3 | exon | 6805165 | 6805515 | 6805165 | ID=Msa0274940-mRNA-1:exon:3225;Parent=Msa0274940-mRNA-1 |
| chr2_3 | five_prime_UTR | 6802472 | 6802684 | 6802472 | ID=Msa0274940-mRNA-1:five_prime_utr;Parent=Msa0274940-mRNA-1 |
| chr2_3 | CDS | 6802685 | 6802741 | 6802685 | ID=Msa0274940-mRNA-1:cds;Parent=Msa0274940-mRNA-1 |
| chr2_3 | CDS | 6803040 | 6803153 | 6803040 | ID=Msa0274940-mRNA-1:cds;Parent=Msa0274940-mRNA-1 |
| chr2_3 | CDS | 6803861 | 6803983 | 6803861 | ID=Msa0274940-mRNA-1:cds;Parent=Msa0274940-mRNA-1 |
| chr2_3 | CDS | 6805165 | 6805290 | 6805165 | ID=Msa0274940-mRNA-1:cds;Parent=Msa0274940-mRNA-1 |
| chr2_3 | three_prime_UTR | 6805291 | 6805515 | 6805291 | ID=Msa0274940-mRNA-1:three_prime_utr;Parent=Msa0274940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
