AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025690 MtrunA17_Chr1g0180531 90.417 240 11 4 1 232 1 236 3.84e-154 427
Msa0025690 MtrunA17_Chr6g0463871 93.750 48 3 0 131 178 1 48 8.14e-29 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025690 AT2G36895.2 61.317 243 71 5 1 232 1 231 1.27e-100 292
Msa0025690 AT2G36895.1 61.066 244 71 6 1 232 1 232 5.91e-99 288
Msa0025690 AT2G36895.3 54.982 271 71 7 1 232 1 259 9.06e-93 273

Find 76 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCCAGGGACTTGATA+TGG 0.196375 1_1:-49062791 Msa0025690:intron
TAATTCATGAATGATTAATT+TGG 0.227552 1_1:+49064574 None:intergenic
CTCTCTTTCGCTTTCTTCAA+TGG 0.255026 1_1:-49064495 Msa0025690:exon
GGAGGATGAATGAGTTGCTT+TGG 0.300368 1_1:+49064319 None:intergenic
ACTTTCTGTAGATATATTCT+AGG 0.300646 1_1:-49060825 Msa0025690:exon
GAGGATGAATGAGTTGCTTT+GGG 0.320392 1_1:+49064320 None:intergenic
CTGTTGCAGTACCATTACTA+TGG 0.322047 1_1:-49060930 Msa0025690:CDS
AAGAGAATCTGAATCTGAAT+AGG 0.338244 1_1:+49064459 None:intergenic
TTTGGAAGAAGGAGAATTGA+TGG 0.338602 1_1:+49064418 None:intergenic
CCACAATAAATTGTTGGTTC+TGG 0.338888 1_1:-49060659 Msa0025690:three_prime_UTR
GAACCATGTTGCCTCCGATT+TGG 0.352718 1_1:+49063634 None:intergenic
CCTGGTGTTAAATTTCCATT+TGG 0.375756 1_1:-49060582 Msa0025690:three_prime_UTR
GTTGTTGAATGAGAAAGATT+TGG 0.383770 1_1:+49064400 None:intergenic
ATCCAATTGTCCATTCTATC+TGG 0.389015 1_1:-49060682 Msa0025690:three_prime_UTR
GACTTCTCACAGAAATTCAA+TGG 0.398474 1_1:-49063701 Msa0025690:intron
AGACGAGGATGAGAGGTAGA+AGG 0.399868 1_1:+49064356 None:intergenic
AATGAGAAAGATTTGGAAGA+AGG 0.401645 1_1:+49064407 None:intergenic
TTTATTGTGGCCAGATAGAA+TGG 0.413219 1_1:+49060672 None:intergenic
ACCTAGACAAAGGCCTTGAT+TGG 0.415493 1_1:+49062911 None:intergenic
AGAAATTCAATGGGTTTCTC+AGG 0.422443 1_1:-49063691 Msa0025690:CDS
ATCTGGCCACAATAAATTGT+TGG 0.424160 1_1:-49060665 Msa0025690:three_prime_UTR
TCTTTCCAGGGACTTGATAT+GGG 0.428716 1_1:-49062790 Msa0025690:intron
TATACAGAGTGCACAAAGAA+TGG 0.442953 1_1:+49060794 None:intergenic
GAAGGAATCGTTGTTGTTGT+TGG 0.444342 1_1:+49064298 None:intergenic
CCTTGGTCGGACGATGATAA+CGG 0.450041 1_1:-49064266 Msa0025690:intron
AGAGAATCTGAATCTGAATA+GGG 0.461673 1_1:+49064460 None:intergenic
TGGAGGAGGAATTGTAGAGA+AGG 0.473722 1_1:-49060863 Msa0025690:CDS
CTTCGAATTCTTCCCTTGGT+CGG 0.474734 1_1:-49064279 Msa0025690:CDS
GGCCAGATAGAATGGACAAT+TGG 0.475499 1_1:+49060680 None:intergenic
AGGCGAAGTGTCTCAGAAGC+TGG 0.476255 1_1:+49060898 None:intergenic
ATTCCTTCGAATTCTTCCCT+TGG 0.488876 1_1:-49064283 Msa0025690:CDS
GAATTGTAGAGAAGGTCTAT+TGG 0.491347 1_1:-49060855 Msa0025690:CDS
CAGTCCGTCAGTGGTGAAGA+AGG 0.505748 1_1:+49063659 None:intergenic
TTTACCTTCTTCACCACTGA+CGG 0.518009 1_1:-49063663 Msa0025690:CDS
ACTTCTCACAGAAATTCAAT+GGG 0.519019 1_1:-49063700 Msa0025690:intron
CCTAGACAAAGGCCTTGATT+GGG 0.524442 1_1:+49062912 None:intergenic
AACTACATGGATCCCAATCA+AGG 0.527063 1_1:-49062924 Msa0025690:CDS
TGTTGCAGTACCATTACTAT+GGG 0.529593 1_1:-49060929 Msa0025690:CDS
GAATTGATGGAATTGTTGAA+TGG 0.545063 1_1:+49064431 None:intergenic
ACTGACGGACTGATCCAAAT+CGG 0.552411 1_1:-49063648 Msa0025690:CDS
GGAATCGTTGTTGTTGTTGG+AGG 0.553086 1_1:+49064301 None:intergenic
CGCCTAGCTGTTAAAAGTGG+AGG 0.555989 1_1:-49060880 Msa0025690:CDS
CCGTTATCATCGTCCGACCA+AGG 0.556516 1_1:+49064266 None:intergenic
CCCAATCAAGGCCTTTGTCT+AGG 0.561143 1_1:-49062912 Msa0025690:CDS
CCAAATGGAAATTTAACACC+AGG 0.562686 1_1:+49060582 None:intergenic
ACAGGTGATTGCCGCAGAGA+AGG 0.564927 1_1:-49060989 Msa0025690:intron
CGTTATCATCGTCCGACCAA+GGG 0.566245 1_1:+49064267 None:intergenic
GAGAGGTAGAAGGAGAAACA+TGG 0.567327 1_1:+49064366 None:intergenic
CTCATGTTTCACAGAAGCAA+GGG 0.567711 1_1:-49062989 Msa0025690:intron
GTATCATGAGAGCAACTACA+TGG 0.569947 1_1:-49062937 Msa0025690:CDS
TTGATGGAATTGTTGAATGG+TGG 0.570204 1_1:+49064434 None:intergenic
CTAGCTGTTAAAAGTGGAGG+AGG 0.572051 1_1:-49060877 Msa0025690:CDS
CTTCGCCTAGCTGTTAAAAG+TGG 0.572780 1_1:-49060883 Msa0025690:CDS
ACGAAGAAGACGAGGATGAG+AGG 0.584511 1_1:+49064349 None:intergenic
TCTCATGTTTCACAGAAGCA+AGG 0.584656 1_1:-49062990 Msa0025690:intron
GGATGAATGAGTTGCTTTGG+GGG 0.591611 1_1:+49064322 None:intergenic
AATATATGATATATCTGCCC+TGG 0.593288 1_1:-49060600 Msa0025690:three_prime_UTR
TCAGAAGACTTGACGCGACG+AGG 0.594267 1_1:+49063612 None:intergenic
GGAGGAACGCCCCATAGTAA+TGG 0.596217 1_1:+49060919 None:intergenic
TAATGGTACTGCAACAGTCA+TGG 0.597221 1_1:+49060936 None:intergenic
GCCGCAGAGAAGGCAAGCAG+AGG 0.602339 1_1:-49060979 Msa0025690:CDS
GATCCAAATCGGAGGCAACA+TGG 0.621305 1_1:-49063637 Msa0025690:CDS
GAATTACTTATATATACGTG+TGG 0.626562 1_1:-49064557 Msa0025690:five_prime_UTR
AGGATGAATGAGTTGCTTTG+GGG 0.628164 1_1:+49064321 None:intergenic
CCAGAACCAACAATTTATTG+TGG 0.629526 1_1:+49060659 None:intergenic
CAAAGAGTGCACCTAGACAA+AGG 0.629542 1_1:+49062901 None:intergenic
CGACCAAGGGAAGAATTCGA+AGG 0.640632 1_1:+49064280 None:intergenic
GATTGAGATGCTTAGTGATG+TGG 0.643100 1_1:-49062734 Msa0025690:CDS
GATTTGGATCAGTCCGTCAG+TGG 0.643323 1_1:+49063650 None:intergenic
CACTAAGCATCTCAATCGAG+CGG 0.647776 1_1:+49062740 None:intergenic
GGGGAGAAACGAAGAAGACG+AGG 0.670848 1_1:+49064341 None:intergenic
CGAAGTGTCTCAGAAGCTGG+AGG 0.672033 1_1:+49060901 None:intergenic
GACGGACTGATCCAAATCGG+AGG 0.686153 1_1:-49063645 Msa0025690:CDS
ACCTCTGCTTGCCTTCTCTG+CGG 0.691246 1_1:+49060978 None:intergenic
CAAATGGAAATTTAACACCA+GGG 0.691425 1_1:+49060583 None:intergenic
GTTGCAGTACCATTACTATG+GGG 0.768312 1_1:-49060928 Msa0025690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTAAGTAAAGATTTT+GGG + chr1_1:49061691-49061710 None:intergenic 10.0%
!!! TTTATTTTAAGTAAAGATTT+TGG + chr1_1:49061692-49061711 None:intergenic 10.0%
!! AATCTTTACTTAAAATAAAA+TGG - chr1_1:49061693-49061712 Msa0025690:intron 10.0%
!! TAATTCATGAATGATTAATT+TGG + chr1_1:49060591-49060610 None:intergenic 15.0%
!!! TAAATTTCAACATATGTTTT+GGG + chr1_1:49061823-49061842 None:intergenic 15.0%
!!! TTAAATTTCAACATATGTTT+TGG + chr1_1:49061824-49061843 None:intergenic 15.0%
!!! ATGTTGAAATTTAACTTTAT+TGG - chr1_1:49061830-49061849 Msa0025690:intron 15.0%
!!! AAATGTAAATTTTTGTTTTC+TGG - chr1_1:49063150-49063169 Msa0025690:intron 15.0%
!!! AATGTAAATTTTTGTTTTCT+GGG - chr1_1:49063151-49063170 Msa0025690:intron 15.0%
!! AATGTGAAAAATTTGAGAAA+TGG + chr1_1:49060637-49060656 None:intergenic 20.0%
!!! TCAGATAAAATCATTTTAAC+TGG + chr1_1:49061323-49061342 None:intergenic 20.0%
!! ACATAAAAAAAACTATCAGT+AGG + chr1_1:49061602-49061621 None:intergenic 20.0%
!! TTTCTTCAATTGAATACAAA+AGG + chr1_1:49061789-49061808 None:intergenic 20.0%
!! TTAAAAACTTAAGCTGTTAT+TGG - chr1_1:49061906-49061925 Msa0025690:intron 20.0%
!!! AATGGATTTAAACAATAAGA+TGG + chr1_1:49062115-49062134 None:intergenic 20.0%
!!! TTCTTTTAGCTATAAAACAA+TGG - chr1_1:49062507-49062526 Msa0025690:intron 20.0%
!!! TTTTAATGAAACCTGTATTT+TGG - chr1_1:49062648-49062667 Msa0025690:intron 20.0%
!!! TTTAATGAAACCTGTATTTT+GGG - chr1_1:49062649-49062668 Msa0025690:intron 20.0%
!! AAACATAATGAAATTGTGAA+AGG + chr1_1:49062917-49062936 None:intergenic 20.0%
!!! TACGAAATCACTAAAATTTT+AGG - chr1_1:49063040-49063059 Msa0025690:intron 20.0%
!! ATAGAGTATAACATAAAATC+TGG - chr1_1:49063331-49063350 Msa0025690:intron 20.0%
!!! GAATTAGCGTAATTTTTTTT+TGG - chr1_1:49063423-49063442 Msa0025690:intron 20.0%
!!! ATATTATTTTAGGCTAATTC+TGG + chr1_1:49063454-49063473 None:intergenic 20.0%
!!! AAAATGTTTTCAACATAGTA+AGG + chr1_1:49063485-49063504 None:intergenic 20.0%
!! ATAATTCAAATTCCTGTAAT+GGG + chr1_1:49063822-49063841 None:intergenic 20.0%
!! AAGATTAAGATAATTAGCTA+GGG + chr1_1:49063902-49063921 None:intergenic 20.0%
!! TAAGATTAAGATAATTAGCT+AGG + chr1_1:49063903-49063922 None:intergenic 20.0%
!!! CCATATAAAATTAGTTCTAA+TGG + chr1_1:49064150-49064169 None:intergenic 20.0%
!!! CCATTAGAACTAATTTTATA+TGG - chr1_1:49064147-49064166 Msa0025690:intron 20.0%
! GAATTACTTATATATACGTG+TGG - chr1_1:49060605-49060624 Msa0025690:three_prime_UTR 25.0%
! CAAAATCAAGAAAAGAAATC+AGG + chr1_1:49060946-49060965 None:intergenic 25.0%
! TAATCTTTGAATTTAACGTG+TGG + chr1_1:49060973-49060992 None:intergenic 25.0%
! ACACGTTAAATTCAAAGATT+AGG - chr1_1:49060972-49060991 Msa0025690:CDS 25.0%
! CACGTTAAATTCAAAGATTA+GGG - chr1_1:49060973-49060992 Msa0025690:CDS 25.0%
!!! ATTAATTTGCATGTATAGTG+TGG - chr1_1:49061044-49061063 Msa0025690:intron 25.0%
!! TTATCTGAAAGTCTGAATTT+TGG - chr1_1:49061335-49061354 Msa0025690:intron 25.0%
!! TATCTGAAAGTCTGAATTTT+GGG - chr1_1:49061336-49061355 Msa0025690:intron 25.0%
!! AGATTTATTTGCGTTTTTCA+TGG - chr1_1:49061386-49061405 Msa0025690:intron 25.0%
!! AATTATGTACTCGTTCTTTT+TGG - chr1_1:49061944-49061963 Msa0025690:intron 25.0%
!!! GAATCAGCTTTTAACTTTTA+AGG - chr1_1:49062037-49062056 Msa0025690:intron 25.0%
!!! TTCTTTTAGATTAGCTAAGT+AGG - chr1_1:49062148-49062167 Msa0025690:intron 25.0%
!!! CTGATATTTTTTAGCAGTTT+GGG + chr1_1:49062203-49062222 None:intergenic 25.0%
! AAACTGCTAAAAAATATCAG+CGG - chr1_1:49062203-49062222 Msa0025690:intron 25.0%
!!! TTTGAGCTTGTTGTTTAATT+AGG - chr1_1:49062712-49062731 Msa0025690:intron 25.0%
! CAGATAAATAGTTCTTCTAA+TGG + chr1_1:49062791-49062810 None:intergenic 25.0%
! GTCTAAAGGTTATGATAAAT+TGG + chr1_1:49062957-49062976 None:intergenic 25.0%
! TTTACATTTCAGCACAAATT+CGG + chr1_1:49063139-49063158 None:intergenic 25.0%
! AGTATAACATAAAATCTGGT+GGG - chr1_1:49063335-49063354 Msa0025690:intron 25.0%
! TATCTAGTGATAGAAAAATG+TGG - chr1_1:49063364-49063383 Msa0025690:intron 25.0%
! ATCTAGTGATAGAAAAATGT+GGG - chr1_1:49063365-49063384 Msa0025690:intron 25.0%
! AGTTCAATTTCCAATTGTTT+AGG - chr1_1:49063768-49063787 Msa0025690:intron 25.0%
! TTAACAAGATCCTAAACAAT+TGG + chr1_1:49063781-49063800 None:intergenic 25.0%
! TAATTCAAATTCCTGTAATG+GGG + chr1_1:49063821-49063840 None:intergenic 25.0%
! CATAATTCAAATTCCTGTAA+TGG + chr1_1:49063823-49063842 None:intergenic 25.0%
! TCTTAATATTAACAAGTAGC+TGG - chr1_1:49063918-49063937 Msa0025690:intron 25.0%
! ATAACATGTTTGAAAAATCC+TGG - chr1_1:49063955-49063974 Msa0025690:intron 25.0%
! ACTTATTAGCAGCTATTAAA+AGG - chr1_1:49063999-49064018 Msa0025690:intron 25.0%
! ACTTTCTGTAGATATATTCT+AGG - chr1_1:49064337-49064356 Msa0025690:CDS 25.0%
AGAGAATCTGAATCTGAATA+GGG + chr1_1:49060705-49060724 None:intergenic 30.0%
AAGAGAATCTGAATCTGAAT+AGG + chr1_1:49060706-49060725 None:intergenic 30.0%
GAATTGATGGAATTGTTGAA+TGG + chr1_1:49060734-49060753 None:intergenic 30.0%
AATGAGAAAGATTTGGAAGA+AGG + chr1_1:49060758-49060777 None:intergenic 30.0%
GTTGTTGAATGAGAAAGATT+TGG + chr1_1:49060765-49060784 None:intergenic 30.0%
! ATCTGAAAGTCTGAATTTTG+GGG - chr1_1:49061337-49061356 Msa0025690:intron 30.0%
ACTTCTCACAGAAATTCAAT+GGG - chr1_1:49061462-49061481 Msa0025690:intron 30.0%
AATTGAATACAAAAGGAGCT+TGG + chr1_1:49061782-49061801 None:intergenic 30.0%
! AGCTGTTATTGGTGATTATA+AGG - chr1_1:49061917-49061936 Msa0025690:intron 30.0%
TTGTTCTACATGAAAGACTA+AGG + chr1_1:49062001-49062020 None:intergenic 30.0%
AGTCTTTCATGTAGAACAAT+TGG - chr1_1:49062002-49062021 Msa0025690:intron 30.0%
AAGAATCTCTGACATTGAAA+TGG + chr1_1:49062133-49062152 None:intergenic 30.0%
!!! GCTGATATTTTTTAGCAGTT+TGG + chr1_1:49062204-49062223 None:intergenic 30.0%
AATTTGAATTTCCTCTTTCC+AGG - chr1_1:49062359-49062378 Msa0025690:intron 30.0%
ATTTGAATTTCCTCTTTCCA+GGG - chr1_1:49062360-49062379 Msa0025690:intron 30.0%
AAGTGGGATTGTTTATTTAG+TGG + chr1_1:49062589-49062608 None:intergenic 30.0%
!!! AAACCTGTATTTTGGGTTAA+CGG - chr1_1:49062656-49062675 Msa0025690:intron 30.0%
AGAACATCAATTAGCATATG+TGG + chr1_1:49062738-49062757 None:intergenic 30.0%
ATTAAACAAACTCTGATCCT+TGG - chr1_1:49062881-49062900 Msa0025690:intron 30.0%
TTAAACAAACTCTGATCCTT+GGG - chr1_1:49062882-49062901 Msa0025690:intron 30.0%
ATGAAATTGTGAAAGGAAGT+AGG + chr1_1:49062910-49062929 None:intergenic 30.0%
TTAGTATTATGAGGGTCTAA+AGG + chr1_1:49062971-49062990 None:intergenic 30.0%
GTTGGGTTTATATCATCAAT+TGG - chr1_1:49063236-49063255 Msa0025690:intron 30.0%
TATATCATCAATTGGAGATG+TGG - chr1_1:49063244-49063263 Msa0025690:intron 30.0%
GAGTATAACATAAAATCTGG+TGG - chr1_1:49063334-49063353 Msa0025690:intron 30.0%
TCTAGTGATAGAAAAATGTG+GGG - chr1_1:49063366-49063385 Msa0025690:intron 30.0%
! GGCTTAGGACATATTATTTT+AGG + chr1_1:49063464-49063483 None:intergenic 30.0%
! TTTTCAACATAGTAAGGCTT+AGG + chr1_1:49063479-49063498 None:intergenic 30.0%
!!! TCTGCTTTTAGAACATTCAA+AGG - chr1_1:49063544-49063563 Msa0025690:intron 30.0%
TGATGCTACACAAAAAAACT+AGG - chr1_1:49063582-49063601 Msa0025690:intron 30.0%
GATGCTACACAAAAAAACTA+GGG - chr1_1:49063583-49063602 Msa0025690:intron 30.0%
! AAGATCTTAAGGTAGTGTTT+TGG + chr1_1:49063612-49063631 None:intergenic 30.0%
AAACACTACCTTAAGATCTT+TGG - chr1_1:49063612-49063631 Msa0025690:CDS 30.0%
AGATGTAAGTTTAACATGCT+AGG + chr1_1:49063729-49063748 None:intergenic 30.0%
GATAATTAGCTAGGGAAAAT+AGG + chr1_1:49063894-49063913 None:intergenic 30.0%
! ACTAATTTTATATGGCACAC+AGG - chr1_1:49064155-49064174 Msa0025690:intron 30.0%
AATATATGATATATCTGCCC+TGG - chr1_1:49064562-49064581 Msa0025690:five_prime_UTR 30.0%
CAAATGGAAATTTAACACCA+GGG + chr1_1:49064582-49064601 None:intergenic 30.0%
TTGATGGAATTGTTGAATGG+TGG + chr1_1:49060731-49060750 None:intergenic 35.0%
TTTGGAAGAAGGAGAATTGA+TGG + chr1_1:49060747-49060766 None:intergenic 35.0%
TTGTTGCAAAAAACTGCTTG+AGG - chr1_1:49061231-49061250 Msa0025690:intron 35.0%
!! GAATTTTGGGGAAATTGTGT+TGG - chr1_1:49061349-49061368 Msa0025690:intron 35.0%
GACTTCTCACAGAAATTCAA+TGG - chr1_1:49061461-49061480 Msa0025690:intron 35.0%
! AGAAATTCAATGGGTTTCTC+AGG - chr1_1:49061471-49061490 Msa0025690:intron 35.0%
ACTGTTGCAATGTAGCAAAA+AGG + chr1_1:49061644-49061663 None:intergenic 35.0%
! TGCAACAGTTATCTTTTGTC+AGG - chr1_1:49061655-49061674 Msa0025690:intron 35.0%
ACAATAAAAATCTCAGCAGC+TGG + chr1_1:49061726-49061745 None:intergenic 35.0%
CAGCAAACGATAACTCATAA+AGG + chr1_1:49062332-49062351 None:intergenic 35.0%
TGGGATTGTTTATTTAGTGG+TGG + chr1_1:49062586-49062605 None:intergenic 35.0%
GTGTAGCATCAAATCAAAGT+GGG + chr1_1:49062605-49062624 None:intergenic 35.0%
!!! AACCTGTATTTTGGGTTAAC+GGG - chr1_1:49062657-49062676 Msa0025690:intron 35.0%
AGGTTATGATAAATTGGACG+AGG + chr1_1:49062951-49062970 None:intergenic 35.0%
! GGTCTAGCTTAGTATTATGA+GGG + chr1_1:49062979-49062998 None:intergenic 35.0%
! TGGTCTAGCTTAGTATTATG+AGG + chr1_1:49062980-49062999 None:intergenic 35.0%
! GATTTCGTAGAAAAGTGCAT+GGG + chr1_1:49063029-49063048 None:intergenic 35.0%
! TGATTTCGTAGAAAAGTGCA+TGG + chr1_1:49063030-49063049 None:intergenic 35.0%
!!! TTTCTGGGATTGTGCATTTT+TGG - chr1_1:49063166-49063185 Msa0025690:intron 35.0%
!!! ATTGTGCATTTTTGGTTCAG+TGG - chr1_1:49063174-49063193 Msa0025690:intron 35.0%
TATGTAACTGGAGAGACTAA+AGG - chr1_1:49063268-49063287 Msa0025690:intron 35.0%
AGAGTGATTGAGAAGAAGAT+GGG - chr1_1:49063294-49063313 Msa0025690:intron 35.0%
! TACCTTAAGATCTTTGGAGA+GGG - chr1_1:49063618-49063637 Msa0025690:CDS 35.0%
TTTGCTGGAACAGCAAATAA+AGG + chr1_1:49063706-49063725 None:intergenic 35.0%
TGGAAATTGAACTGAAGAAC+TGG + chr1_1:49063761-49063780 None:intergenic 35.0%
GTTTGAAAAATCCTGGAAGT+TGG - chr1_1:49063962-49063981 Msa0025690:intron 35.0%
! AAAAATCCTGGAAGTTGGTT+GGG - chr1_1:49063967-49063986 Msa0025690:intron 35.0%
CAGCTATTAAAAGGTAATGC+TGG - chr1_1:49064008-49064027 Msa0025690:intron 35.0%
TGTTGCAGTACCATTACTAT+GGG - chr1_1:49064233-49064252 Msa0025690:intron 35.0%
GAATTGTAGAGAAGGTCTAT+TGG - chr1_1:49064307-49064326 Msa0025690:CDS 35.0%
TATACAGAGTGCACAAAGAA+TGG + chr1_1:49064371-49064390 None:intergenic 35.0%
ATCCAATTGTCCATTCTATC+TGG - chr1_1:49064480-49064499 Msa0025690:exon 35.0%
TTTATTGTGGCCAGATAGAA+TGG + chr1_1:49064493-49064512 None:intergenic 35.0%
ATCTGGCCACAATAAATTGT+TGG - chr1_1:49064497-49064516 Msa0025690:exon 35.0%
CCAGAACCAACAATTTATTG+TGG + chr1_1:49064506-49064525 None:intergenic 35.0%
!! CCACAATAAATTGTTGGTTC+TGG - chr1_1:49064503-49064522 Msa0025690:five_prime_UTR 35.0%
CCAAATGGAAATTTAACACC+AGG + chr1_1:49064583-49064602 None:intergenic 35.0%
CTCTCTTTCGCTTTCTTCAA+TGG - chr1_1:49060667-49060686 Msa0025690:three_prime_UTR 40.0%
! AGGATGAATGAGTTGCTTTG+GGG + chr1_1:49060844-49060863 None:intergenic 40.0%
! GAGGATGAATGAGTTGCTTT+GGG + chr1_1:49060845-49060864 None:intergenic 40.0%
! GAAGGAATCGTTGTTGTTGT+TGG + chr1_1:49060867-49060886 None:intergenic 40.0%
ATTCCTTCGAATTCTTCCCT+TGG - chr1_1:49060879-49060898 Msa0025690:CDS 40.0%
!! TTGATGCAGAAGCTGTTTTG+TGG - chr1_1:49061103-49061122 Msa0025690:intron 40.0%
TTTACCTTCTTCACCACTGA+CGG - chr1_1:49061499-49061518 Msa0025690:intron 40.0%
! ACAATATCAAAGCATCCGAG+TGG + chr1_1:49061868-49061887 None:intergenic 40.0%
TCTCATGTTTCACAGAAGCA+AGG - chr1_1:49062172-49062191 Msa0025690:intron 40.0%
CTCATGTTTCACAGAAGCAA+GGG - chr1_1:49062173-49062192 Msa0025690:intron 40.0%
GTATCATGAGAGCAACTACA+TGG - chr1_1:49062225-49062244 Msa0025690:intron 40.0%
AACTACATGGATCCCAATCA+AGG - chr1_1:49062238-49062257 Msa0025690:intron 40.0%
TCTTTCCAGGGACTTGATAT+GGG - chr1_1:49062372-49062391 Msa0025690:intron 40.0%
GATTGAGATGCTTAGTGATG+TGG - chr1_1:49062428-49062447 Msa0025690:intron 40.0%
TGGTGGTAAAATGTTGTGCA+TGG + chr1_1:49062569-49062588 None:intergenic 40.0%
CGTGTAGCATCAAATCAAAG+TGG + chr1_1:49062606-49062625 None:intergenic 40.0%
!! GCAAGAGTTCGATTTGTTAG+TGG - chr1_1:49062689-49062708 Msa0025690:intron 40.0%
CATTGTGTGAGTCAGAAAGT+TGG + chr1_1:49063000-49063019 None:intergenic 40.0%
ACTTTCTGACTCACACAATG+AGG - chr1_1:49063000-49063019 Msa0025690:intron 40.0%
ATCACGTATCATTCCTCATC+TGG - chr1_1:49063076-49063095 Msa0025690:intron 40.0%
AGAGGAATTGAAACCAGATG+AGG + chr1_1:49063092-49063111 None:intergenic 40.0%
TTCCTCTTCTGCTGAATCAT+CGG - chr1_1:49063105-49063124 Msa0025690:intron 40.0%
AGTGAGCTATCTGTGAAGTT+GGG - chr1_1:49063219-49063238 Msa0025690:intron 40.0%
TGGAGATGTGGTTATGTAAC+TGG - chr1_1:49063256-49063275 Msa0025690:intron 40.0%
GAGAGTGATTGAGAAGAAGA+TGG - chr1_1:49063293-49063312 Msa0025690:intron 40.0%
GAGTGATTGAGAAGAAGATG+GGG - chr1_1:49063295-49063314 Msa0025690:intron 40.0%
GAAGAAGATGGGGAATGATT+TGG - chr1_1:49063305-49063324 Msa0025690:intron 40.0%
TGATAGAAAAATGTGGGGCA+TGG - chr1_1:49063371-49063390 Msa0025690:intron 40.0%
! CTACCTTAAGATCTTTGGAG+AGG - chr1_1:49063617-49063636 Msa0025690:CDS 40.0%
TACCCTCTCCAAAGATCTTA+AGG + chr1_1:49063623-49063642 None:intergenic 40.0%
! ATTTTCTCCACACATCCACA+AGG - chr1_1:49063652-49063671 Msa0025690:CDS 40.0%
GTTTAACATGCTAGGTTTGC+TGG + chr1_1:49063721-49063740 None:intergenic 40.0%
GCAATAAGTTACCCCATTAC+AGG - chr1_1:49063807-49063826 Msa0025690:intron 40.0%
AACCATTCATTCACCTGCTA+TGG - chr1_1:49063844-49063863 Msa0025690:intron 40.0%
TTCCATAGCAGGTGAATGAA+TGG + chr1_1:49063849-49063868 None:intergenic 40.0%
TACGAAGATTGTTCCATAGC+AGG + chr1_1:49063860-49063879 None:intergenic 40.0%
! ACAAGTAGCTGGAGCTTTTA+TGG - chr1_1:49063929-49063948 Msa0025690:intron 40.0%
! CAAGTAGCTGGAGCTTTTAT+GGG - chr1_1:49063930-49063949 Msa0025690:intron 40.0%
! GAAAAATCCTGGAAGTTGGT+TGG - chr1_1:49063966-49063985 Msa0025690:intron 40.0%
ATGCTGGTAAAACACATGCT+AGG - chr1_1:49064024-49064043 Msa0025690:intron 40.0%
TGCTGGTAAAACACATGCTA+GGG - chr1_1:49064025-49064044 Msa0025690:intron 40.0%
CTAATGGTCACACAGAATTG+AGG + chr1_1:49064134-49064153 None:intergenic 40.0%
TAATGGTACTGCAACAGTCA+TGG + chr1_1:49064229-49064248 None:intergenic 40.0%
CTGTTGCAGTACCATTACTA+TGG - chr1_1:49064232-49064251 Msa0025690:intron 40.0%
GTTGCAGTACCATTACTATG+GGG - chr1_1:49064234-49064253 Msa0025690:intron 40.0%
GAGAGGTAGAAGGAGAAACA+TGG + chr1_1:49060799-49060818 None:intergenic 45.0%
! GGATGAATGAGTTGCTTTGG+GGG + chr1_1:49060843-49060862 None:intergenic 45.0%
GGAGGATGAATGAGTTGCTT+TGG + chr1_1:49060846-49060865 None:intergenic 45.0%
! GGAATCGTTGTTGTTGTTGG+AGG + chr1_1:49060864-49060883 None:intergenic 45.0%
CTTCGAATTCTTCCCTTGGT+CGG - chr1_1:49060883-49060902 Msa0025690:CDS 45.0%
!! ACTGACGGACTGATCCAAAT+CGG - chr1_1:49061514-49061533 Msa0025690:intron 45.0%
CCTAGACAAAGGCCTTGATT+GGG + chr1_1:49062253-49062272 None:intergenic 45.0%
ACCTAGACAAAGGCCTTGAT+TGG + chr1_1:49062254-49062273 None:intergenic 45.0%
! CAAAGAGTGCACCTAGACAA+AGG + chr1_1:49062264-49062283 None:intergenic 45.0%
CATATCAAGTCCCTGGAAAG+AGG + chr1_1:49062373-49062392 None:intergenic 45.0%
CTCTTTCCAGGGACTTGATA+TGG - chr1_1:49062371-49062390 Msa0025690:intron 45.0%
CACTAAGCATCTCAATCGAG+CGG + chr1_1:49062425-49062444 None:intergenic 45.0%
TGTGGTGCAAGATACTGTCT+TGG - chr1_1:49062446-49062465 Msa0025690:intron 45.0%
CAAGATACTGTCTTGGAGCA+TGG - chr1_1:49062453-49062472 Msa0025690:intron 45.0%
ATACTGTCTTGGAGCATGGT+GGG - chr1_1:49062457-49062476 Msa0025690:intron 45.0%
CTCCCGTTAACCCAAAATAC+AGG + chr1_1:49062662-49062681 None:intergenic 45.0%
TTCTCGAGTCTTCTGCAAAC+TGG + chr1_1:49062860-49062879 None:intergenic 45.0%
TGAAAGGAAGTAGGAACCCA+AGG + chr1_1:49062901-49062920 None:intergenic 45.0%
TCCTCTTCTGCTGAATCATC+GGG - chr1_1:49063106-49063125 Msa0025690:intron 45.0%
GAGTGAGCTATCTGTGAAGT+TGG - chr1_1:49063218-49063237 Msa0025690:intron 45.0%
! GAAGATGGGGAATGATTTGG+TGG - chr1_1:49063308-49063327 Msa0025690:intron 45.0%
ATCAGTTCGCAAAGAAGCTG+TGG + chr1_1:49063681-49063700 None:intergenic 45.0%
GCTGGTAAAACACATGCTAG+GGG - chr1_1:49064026-49064045 Msa0025690:intron 45.0%
CTTCGCCTAGCTGTTAAAAG+TGG - chr1_1:49064279-49064298 Msa0025690:CDS 45.0%
!! CTCCTCCACTTTTAACAGCT+AGG + chr1_1:49064287-49064306 None:intergenic 45.0%
CTAGCTGTTAAAAGTGGAGG+AGG - chr1_1:49064285-49064304 Msa0025690:CDS 45.0%
TGGAGGAGGAATTGTAGAGA+AGG - chr1_1:49064299-49064318 Msa0025690:CDS 45.0%
GGCCAGATAGAATGGACAAT+TGG + chr1_1:49064485-49064504 None:intergenic 45.0%
AGACGAGGATGAGAGGTAGA+AGG + chr1_1:49060809-49060828 None:intergenic 50.0%
ACGAAGAAGACGAGGATGAG+AGG + chr1_1:49060816-49060835 None:intergenic 50.0%
CGACCAAGGGAAGAATTCGA+AGG + chr1_1:49060885-49060904 None:intergenic 50.0%
CGTTATCATCGTCCGACCAA+GGG + chr1_1:49060898-49060917 None:intergenic 50.0%
CCTTGGTCGGACGATGATAA+CGG - chr1_1:49060896-49060915 Msa0025690:CDS 50.0%
GATTTGGATCAGTCCGTCAG+TGG + chr1_1:49061515-49061534 None:intergenic 50.0%
GATCCAAATCGGAGGCAACA+TGG - chr1_1:49061525-49061544 Msa0025690:intron 50.0%
GAACCATGTTGCCTCCGATT+TGG + chr1_1:49061531-49061550 None:intergenic 50.0%
! TGGAAGAGTGCGAAACCACT+CGG - chr1_1:49061850-49061869 Msa0025690:intron 50.0%
CCCAATCAAGGCCTTTGTCT+AGG - chr1_1:49062250-49062269 Msa0025690:intron 50.0%
! GGCAGACGACTCTGCATTTT+TGG - chr1_1:49062393-49062412 Msa0025690:intron 50.0%
GATACTGTCTTGGAGCATGG+TGG - chr1_1:49062456-49062475 Msa0025690:intron 50.0%
TACTGTCTTGGAGCATGGTG+GGG - chr1_1:49062458-49062477 Msa0025690:intron 50.0%
CTAGTGTGCAGAAGTGACGT+AGG - chr1_1:49062536-49062555 Msa0025690:intron 50.0%
! TTTGGGTTAACGGGAGCAAG+AGG - chr1_1:49062666-49062685 Msa0025690:intron 50.0%
TTGGGTTAACGGGAGCAAGA+GGG - chr1_1:49062667-49062686 Msa0025690:intron 50.0%
ACCCGATGATTCAGCAGAAG+AGG + chr1_1:49063110-49063129 None:intergenic 50.0%
CTAGTGTGCACAAGTGACAC+AGG + chr1_1:49063404-49063423 None:intergenic 50.0%
AAGAAGCTGTGGCTTCCTTG+TGG + chr1_1:49063670-49063689 None:intergenic 50.0%
! ATCCTGGAAGTTGGTTGGGT+TGG - chr1_1:49063971-49063990 Msa0025690:intron 50.0%
AACCAACCCAACCAACTTCC+AGG + chr1_1:49063976-49063995 None:intergenic 50.0%
!! TGGAAGTTGGTTGGGTTGGT+TGG - chr1_1:49063975-49063994 Msa0025690:intron 50.0%
CGCCTAGCTGTTAAAAGTGG+AGG - chr1_1:49064282-49064301 Msa0025690:CDS 50.0%
GGGGAGAAACGAAGAAGACG+AGG + chr1_1:49060824-49060843 None:intergenic 55.0%
CCGTTATCATCGTCCGACCA+AGG + chr1_1:49060899-49060918 None:intergenic 55.0%
CAGTCCGTCAGTGGTGAAGA+AGG + chr1_1:49061506-49061525 None:intergenic 55.0%
!! GACGGACTGATCCAAATCGG+AGG - chr1_1:49061517-49061536 Msa0025690:intron 55.0%
TCAGAAGACTTGACGCGACG+AGG + chr1_1:49061553-49061572 None:intergenic 55.0%
GTCTGCCCATATCAAGTCCC+TGG + chr1_1:49062380-49062399 None:intergenic 55.0%
GTTCAGTGGAGCCTACCCTT+CGG - chr1_1:49063188-49063207 Msa0025690:intron 55.0%
ACTCAACGACTCCGAAGGGT+AGG + chr1_1:49063202-49063221 None:intergenic 55.0%
GCTCACTCAACGACTCCGAA+GGG + chr1_1:49063206-49063225 None:intergenic 55.0%
AGCTCACTCAACGACTCCGA+AGG + chr1_1:49063207-49063226 None:intergenic 55.0%
GTGGCTTCCTTGTGGATGTG+TGG + chr1_1:49063662-49063681 None:intergenic 55.0%
ACAGGTGATTGCCGCAGAGA+AGG - chr1_1:49064173-49064192 Msa0025690:intron 55.0%
ACCTCTGCTTGCCTTCTCTG+CGG + chr1_1:49064187-49064206 None:intergenic 55.0%
GGAGGAACGCCCCATAGTAA+TGG + chr1_1:49064246-49064265 None:intergenic 55.0%
! CGAAGTGTCTCAGAAGCTGG+AGG + chr1_1:49064264-49064283 None:intergenic 55.0%
! AGGCGAAGTGTCTCAGAAGC+TGG + chr1_1:49064267-49064286 None:intergenic 55.0%
! TGTCTTGGAGCATGGTGGGG+AGG - chr1_1:49062461-49062480 Msa0025690:intron 60.0%
! TTGGAGCATGGTGGGGAGGT+AGG - chr1_1:49062465-49062484 Msa0025690:intron 60.0%
GCCGCAGAGAAGGCAAGCAG+AGG - chr1_1:49064183-49064202 Msa0025690:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49060582 49064602 49060582 ID=Msa0025690;Name=Msa0025690
chr1_1 mRNA 49060582 49064602 49060582 ID=Msa0025690-mRNA-1;Parent=Msa0025690;Name=Msa0025690-mRNA-1;_AED=0.13;_eAED=0.13;_QI=104|0.75|0.8|1|0.75|0.8|5|255|232
chr1_1 exon 49060582 49061007 49060582 ID=Msa0025690-mRNA-1:exon:14132;Parent=Msa0025690-mRNA-1
chr1_1 exon 49062723 49062803 49062723 ID=Msa0025690-mRNA-1:exon:14131;Parent=Msa0025690-mRNA-1
chr1_1 exon 49062884 49062997 49062884 ID=Msa0025690-mRNA-1:exon:14130;Parent=Msa0025690-mRNA-1
chr1_1 exon 49063611 49063711 49063611 ID=Msa0025690-mRNA-1:exon:14129;Parent=Msa0025690-mRNA-1
chr1_1 exon 49064267 49064602 49064267 ID=Msa0025690-mRNA-1:exon:14128;Parent=Msa0025690-mRNA-1
chr1_1 five_prime_UTR 49064499 49064602 49064499 ID=Msa0025690-mRNA-1:five_prime_utr;Parent=Msa0025690-mRNA-1
chr1_1 CDS 49064267 49064498 49064267 ID=Msa0025690-mRNA-1:cds;Parent=Msa0025690-mRNA-1
chr1_1 CDS 49063611 49063711 49063611 ID=Msa0025690-mRNA-1:cds;Parent=Msa0025690-mRNA-1
chr1_1 CDS 49062884 49062997 49062884 ID=Msa0025690-mRNA-1:cds;Parent=Msa0025690-mRNA-1
chr1_1 CDS 49062723 49062803 49062723 ID=Msa0025690-mRNA-1:cds;Parent=Msa0025690-mRNA-1
chr1_1 CDS 49060837 49061007 49060837 ID=Msa0025690-mRNA-1:cds;Parent=Msa0025690-mRNA-1
chr1_1 three_prime_UTR 49060582 49060836 49060582 ID=Msa0025690-mRNA-1:three_prime_utr;Parent=Msa0025690-mRNA-1
Gene Sequence

>Msa0025690

ATGGCTGAAACTTCAACCCTATTCAGATTCAGATTCTCTTCTCCACCATTCAACAATTCCATCAATTCTCCTTCTTCCAAATCTTTCTCATTCAACAACAGCAACTCTTTCCATGTTTCTCCTTCTACCTCTCATCCTCGTCTTCTTCGTTTCTCCCCCAAAGCAACTCATTCATCCTCCAACAACAACAACGATTCCTTCGAATTCTTCCCTTGGTCGGACGATGATAACGAAATTCAATGGGTTTCTCAGGACAAATTTACCTTCTTCACCACTGACGGACTGATCCAAATCGGAGGCAACATGGTTCCTCGTCGCGTCAAGTCTTCTGATAAGCAAGGGAAATCCCAAACTGCTAAAAAATATCAGCGGTATCATGAGAGCAACTACATGGATCCCAATCAAGGCCTTTGTCTAGGTGCACTCTTTGATATTGCAGCTACAAATGGACTTGATATGGGCAGACGACTCTGCATTTTTGGTTTCTGCCGCTCGATTGAGATGCTTAGTGATGTGGTGCAAGATACTGTGATTGCCGCAGAGAAGGCAAGCAGAGGTGATTTGCATGAAAAGCTAACCATGACTGTTGCAGTACCATTACTATGGGGCGTTCCTCCAGCTTCTGAGACACTTCGCCTAGCTGTTAAAAGTGGAGGAGGAATTGTAGAGAAGGTCTATTGGCAATTCGACTTTCTGTAG

Protein sequence

>Msa0025690

MAETSTLFRFRFSSPPFNNSINSPSSKSFSFNNSNSFHVSPSTSHPRLLRFSPKATHSSSNNNNDSFEFFPWSDDDNEIQWVSQDKFTFFTTDGLIQIGGNMVPRRVKSSDKQGKSQTAKKYQRYHESNYMDPNQGLCLGALFDIAATNGLDMGRRLCIFGFCRSIEMLSDVVQDTVIAAEKASRGDLHEKLTMTVAVPLLWGVPPASETLRLAVKSGGGIVEKVYWQFDFL*