Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824740 | XP_024640932.1 | 93.506 | 77 | 5 | 0 | 1 | 77 | 1 | 77 | 1.05e-42 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824740 | G7K4G3 | 94.595 | 74 | 4 | 0 | 4 | 77 | 3 | 76 | 2.51e-41 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0671640 | Msa0824740 | 0.826717 | 2.327533e-54 | -8.615850e-47 |
| Msa0824740 | Msa0863790 | 0.868098 | 8.401997e-66 | -8.615850e-47 |
| Msa0824740 | Msa1041260 | 0.816321 | 5.873366e-52 | -8.615850e-47 |
| Msa0824740 | Msa1165660 | 0.812495 | 4.120569e-51 | -8.615850e-47 |
| Msa0824740 | Msa1366470 | 0.809471 | 1.861889e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824740 | MtrunA17_Chr5g0445581 | 94.595 | 74 | 4 | 0 | 4 | 77 | 3 | 76 | 4.84e-45 | 139 |
| Msa0824740 | MtrunA17_Chr2g0290831 | 42.188 | 64 | 37 | 0 | 3 | 66 | 2 | 65 | 7.58e-11 | 52.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824740 | AT4G05030.2 | 44.444 | 72 | 39 | 1 | 4 | 75 | 3 | 73 | 1.75e-11 | 54.7 |
| Msa0824740 | AT4G05030.1 | 45.070 | 71 | 38 | 1 | 5 | 75 | 37 | 106 | 5.80e-11 | 53.9 |
Find 18 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATAGAGTGGTGATTAA+AGG | 0.272964 | 5_3:-64228524 | Msa0824740:CDS |
| TATACATAGTTATTCATCAT+TGG | 0.378479 | 5_3:+64228424 | None:intergenic |
| AGGTGTTACAATGGTTACTT+TGG | 0.427464 | 5_3:-64228558 | Msa0824740:CDS |
| ACCATCAGCAATGGTACATA+TGG | 0.447473 | 5_3:+64229547 | None:intergenic |
| CAAGGGTGACTGAACGTTTG+AGG | 0.485328 | 5_3:-64228484 | Msa0824740:CDS |
| TACAATGGTTACTTTGGAAA+GGG | 0.497733 | 5_3:-64228552 | Msa0824740:CDS |
| TTACAATGGTTACTTTGGAA+AGG | 0.504948 | 5_3:-64228553 | Msa0824740:CDS |
| AAGGGTGACTGAACGTTTGA+GGG | 0.506906 | 5_3:-64228483 | Msa0824740:CDS |
| ACTAACAAGTCTAGCATGCC+TGG | 0.525033 | 5_3:+64228451 | None:intergenic |
| AAAATGCAAGAAGAAGATAT+TGG | 0.540381 | 5_3:-64229570 | Msa0824740:CDS |
| ATGGTTACTTTGGAAAGGGA+AGG | 0.567959 | 5_3:-64228548 | Msa0824740:CDS |
| GAGAAGATGTTGATGCAGCA+AGG | 0.572875 | 5_3:-64228502 | Msa0824740:CDS |
| AAGGGAAGGAAAAGATAGAG+TGG | 0.595147 | 5_3:-64228534 | Msa0824740:CDS |
| AGAAGATGTTGATGCAGCAA+GGG | 0.596117 | 5_3:-64228501 | Msa0824740:CDS |
| GAATGATATAGGTGTTACAA+TGG | 0.641061 | 5_3:-64228567 | Msa0824740:intron |
| GCCATATGTACCATTGCTGA+TGG | 0.651621 | 5_3:-64229548 | Msa0824740:intron |
| TCAACACATACCATCAGCAA+TGG | 0.657350 | 5_3:+64229538 | None:intergenic |
| GTTTGAGGGAGAAAGTGACC+AGG | 0.682645 | 5_3:-64228469 | Msa0824740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr5_3:64228585-64228604 | Msa0824740:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr5_3:64228584-64228603 | Msa0824740:intron | 0.0% |
| !!! | TAAAATTTATTTTAATTAAA+AGG | - | chr5_3:64228989-64229008 | Msa0824740:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr5_3:64228585-64228604 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr5_3:64228584-64228603 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr5_3:64228585-64228604 | Msa0824740:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr5_3:64228584-64228603 | Msa0824740:intron | 0.0% |
| !!! | TAAAATTTATTTTAATTAAA+AGG | - | chr5_3:64228989-64229008 | Msa0824740:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr5_3:64228585-64228604 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr5_3:64228584-64228603 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr5_3:64228630-64228649 | Msa0824740:intron | 10.0% |
| !! | TATATATATATATATATAGG+GGG | + | chr5_3:64229142-64229161 | None:intergenic | 10.0% |
| !! | ATATATAACAAATATTACAT+TGG | - | chr5_3:64229199-64229218 | Msa0824740:intron | 10.0% |
| !!! | ATTTTTAACTTTTCAATATT+AGG | - | chr5_3:64229423-64229442 | Msa0824740:intron | 10.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr5_3:64228630-64228649 | Msa0824740:intron | 10.0% |
| !! | TATATATATATATATATAGG+GGG | + | chr5_3:64229142-64229161 | None:intergenic | 10.0% |
| !! | ATATATAACAAATATTACAT+TGG | - | chr5_3:64229199-64229218 | Msa0824740:intron | 10.0% |
| !!! | ATTTTTAACTTTTCAATATT+AGG | - | chr5_3:64229423-64229442 | Msa0824740:intron | 10.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr5_3:64228794-64228813 | Msa0824740:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr5_3:64228795-64228814 | Msa0824740:intron | 15.0% |
| !!! | AAATTTTAATAGAGACAAAA+GGG | + | chr5_3:64228977-64228996 | None:intergenic | 15.0% |
| !!! | TAAATTTTAATAGAGACAAA+AGG | + | chr5_3:64228978-64228997 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr5_3:64228794-64228813 | Msa0824740:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr5_3:64228795-64228814 | Msa0824740:intron | 15.0% |
| !! | GAAAAAAGAAATATGTATTA+TGG | + | chr5_3:64229381-64229400 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr5_3:64228794-64228813 | Msa0824740:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr5_3:64228795-64228814 | Msa0824740:intron | 15.0% |
| !!! | AAATTTTAATAGAGACAAAA+GGG | + | chr5_3:64228977-64228996 | None:intergenic | 15.0% |
| !!! | TAAATTTTAATAGAGACAAA+AGG | + | chr5_3:64228978-64228997 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr5_3:64228794-64228813 | Msa0824740:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr5_3:64228795-64228814 | Msa0824740:intron | 15.0% |
| !! | GAAAAAAGAAATATGTATTA+TGG | + | chr5_3:64229381-64229400 | None:intergenic | 15.0% |
| !! | AAAGTTTAATAGAGACAAAA+AGG | + | chr5_3:64228731-64228750 | None:intergenic | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+AGG | + | chr5_3:64228731-64228750 | None:intergenic | 20.0% |
| ! | AAAATGCAAGAAGAAGATAT+TGG | - | chr5_3:64228477-64228496 | Msa0824740:CDS | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr5_3:64228708-64228727 | None:intergenic | 25.0% |
| ! | TGTTATGGTAAATAACTAGT+AGG | - | chr5_3:64228818-64228837 | Msa0824740:intron | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr5_3:64228708-64228727 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr5_3:64229064-64229083 | Msa0824740:intron | 25.0% |
| ! | TAACAAATATTACATTGGTC+TGG | - | chr5_3:64229204-64229223 | Msa0824740:intron | 25.0% |
| ! | AAACCTTGTGATGAAAAATA+TGG | - | chr5_3:64229258-64229277 | Msa0824740:intron | 25.0% |
| !! | TAACCATATTTTTCATCACA+AGG | + | chr5_3:64229264-64229283 | None:intergenic | 25.0% |
| ! | TGATGAAAAATATGGTTAAG+AGG | - | chr5_3:64229266-64229285 | Msa0824740:intron | 25.0% |
| !! | AACTTTTCAATATTAGGAAC+TGG | - | chr5_3:64229429-64229448 | Msa0824740:intron | 25.0% |
| ! | AATATTAGGAACTGGTAATA+CGG | - | chr5_3:64229437-64229456 | Msa0824740:intron | 25.0% |
| ! | TAATCGTTTGTGAATGATAT+AGG | - | chr5_3:64229469-64229488 | Msa0824740:intron | 25.0% |
| ! | AAAATGCAAGAAGAAGATAT+TGG | - | chr5_3:64228477-64228496 | Msa0824740:CDS | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr5_3:64228708-64228727 | None:intergenic | 25.0% |
| ! | TGTTATGGTAAATAACTAGT+AGG | - | chr5_3:64228818-64228837 | Msa0824740:intron | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr5_3:64228708-64228727 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr5_3:64229064-64229083 | Msa0824740:intron | 25.0% |
| ! | TAACAAATATTACATTGGTC+TGG | - | chr5_3:64229204-64229223 | Msa0824740:intron | 25.0% |
| ! | AAACCTTGTGATGAAAAATA+TGG | - | chr5_3:64229258-64229277 | Msa0824740:intron | 25.0% |
| !! | TAACCATATTTTTCATCACA+AGG | + | chr5_3:64229264-64229283 | None:intergenic | 25.0% |
| ! | TGATGAAAAATATGGTTAAG+AGG | - | chr5_3:64229266-64229285 | Msa0824740:intron | 25.0% |
| !! | AACTTTTCAATATTAGGAAC+TGG | - | chr5_3:64229429-64229448 | Msa0824740:intron | 25.0% |
| ! | AATATTAGGAACTGGTAATA+CGG | - | chr5_3:64229437-64229456 | Msa0824740:intron | 25.0% |
| ! | TAATCGTTTGTGAATGATAT+AGG | - | chr5_3:64229469-64229488 | Msa0824740:intron | 25.0% |
| ATAGAAAAACATGGGTGTTA+TGG | - | chr5_3:64228803-64228822 | Msa0824740:intron | 30.0% | |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr5_3:64229049-64229068 | Msa0824740:intron | 30.0% |
| ! | GAATGATATAGGTGTTACAA+TGG | - | chr5_3:64229480-64229499 | Msa0824740:intron | 30.0% |
| ! | TTACAATGGTTACTTTGGAA+AGG | - | chr5_3:64229494-64229513 | Msa0824740:intron | 30.0% |
| ! | TACAATGGTTACTTTGGAAA+GGG | - | chr5_3:64229495-64229514 | Msa0824740:intron | 30.0% |
| AAAGATAGAGTGGTGATTAA+AGG | - | chr5_3:64229523-64229542 | Msa0824740:intron | 30.0% | |
| ATAGAAAAACATGGGTGTTA+TGG | - | chr5_3:64228803-64228822 | Msa0824740:intron | 30.0% | |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr5_3:64229049-64229068 | Msa0824740:intron | 30.0% |
| ! | GAATGATATAGGTGTTACAA+TGG | - | chr5_3:64229480-64229499 | Msa0824740:intron | 30.0% |
| ! | TTACAATGGTTACTTTGGAA+AGG | - | chr5_3:64229494-64229513 | Msa0824740:intron | 30.0% |
| ! | TACAATGGTTACTTTGGAAA+GGG | - | chr5_3:64229495-64229514 | Msa0824740:intron | 30.0% |
| AAAGATAGAGTGGTGATTAA+AGG | - | chr5_3:64229523-64229542 | Msa0824740:intron | 30.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr5_3:64228853-64228872 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr5_3:64228853-64228872 | Msa0824740:intron | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr5_3:64228853-64228872 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr5_3:64228853-64228872 | Msa0824740:intron | 35.0% |
| GACTACACTAAAGATCAATC+AGG | - | chr5_3:64229292-64229311 | Msa0824740:intron | 35.0% | |
| GAGGATGACTAATATTCATC+AGG | + | chr5_3:64229321-64229340 | None:intergenic | 35.0% | |
| ATTAGTCATCCTCGAGAAAT+TGG | - | chr5_3:64229328-64229347 | Msa0824740:intron | 35.0% | |
| ! | AGGTGTTACAATGGTTACTT+TGG | - | chr5_3:64229489-64229508 | Msa0824740:intron | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr5_3:64228853-64228872 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr5_3:64228853-64228872 | Msa0824740:intron | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr5_3:64228853-64228872 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr5_3:64228853-64228872 | Msa0824740:intron | 35.0% |
| GACTACACTAAAGATCAATC+AGG | - | chr5_3:64229292-64229311 | Msa0824740:intron | 35.0% | |
| GAGGATGACTAATATTCATC+AGG | + | chr5_3:64229321-64229340 | None:intergenic | 35.0% | |
| ATTAGTCATCCTCGAGAAAT+TGG | - | chr5_3:64229328-64229347 | Msa0824740:intron | 35.0% | |
| ! | AGGTGTTACAATGGTTACTT+TGG | - | chr5_3:64229489-64229508 | Msa0824740:intron | 35.0% |
| ! | TCTTCTTGCATTTTGCACAG+TGG | + | chr5_3:64228471-64228490 | None:intergenic | 40.0% |
| ACCATCAGCAATGGTACATA+TGG | + | chr5_3:64228503-64228522 | None:intergenic | 40.0% | |
| TCAACACATACCATCAGCAA+TGG | + | chr5_3:64228512-64228531 | None:intergenic | 40.0% | |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr5_3:64228857-64228876 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr5_3:64228856-64228875 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr5_3:64228856-64228875 | Msa0824740:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr5_3:64228857-64228876 | Msa0824740:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr5_3:64228857-64228876 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr5_3:64228856-64228875 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr5_3:64228856-64228875 | Msa0824740:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr5_3:64228857-64228876 | Msa0824740:intron | 40.0% |
| ! | ATGGTTACTTTGGAAAGGGA+AGG | - | chr5_3:64229499-64229518 | Msa0824740:intron | 40.0% |
| AAGGGAAGGAAAAGATAGAG+TGG | - | chr5_3:64229513-64229532 | Msa0824740:intron | 40.0% | |
| AGAAGATGTTGATGCAGCAA+GGG | - | chr5_3:64229546-64229565 | Msa0824740:intron | 40.0% | |
| ! | TCTTCTTGCATTTTGCACAG+TGG | + | chr5_3:64228471-64228490 | None:intergenic | 40.0% |
| ACCATCAGCAATGGTACATA+TGG | + | chr5_3:64228503-64228522 | None:intergenic | 40.0% | |
| TCAACACATACCATCAGCAA+TGG | + | chr5_3:64228512-64228531 | None:intergenic | 40.0% | |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr5_3:64228857-64228876 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr5_3:64228856-64228875 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr5_3:64228856-64228875 | Msa0824740:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr5_3:64228857-64228876 | Msa0824740:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr5_3:64228857-64228876 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr5_3:64228856-64228875 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr5_3:64228856-64228875 | Msa0824740:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr5_3:64228857-64228876 | Msa0824740:intron | 40.0% |
| ! | ATGGTTACTTTGGAAAGGGA+AGG | - | chr5_3:64229499-64229518 | Msa0824740:intron | 40.0% |
| AAGGGAAGGAAAAGATAGAG+TGG | - | chr5_3:64229513-64229532 | Msa0824740:intron | 40.0% | |
| AGAAGATGTTGATGCAGCAA+GGG | - | chr5_3:64229546-64229565 | Msa0824740:intron | 40.0% | |
| ! | TTGCATTTTGCACAGTGGAG+GGG | + | chr5_3:64228466-64228485 | None:intergenic | 45.0% |
| ! | CTTGCATTTTGCACAGTGGA+GGG | + | chr5_3:64228467-64228486 | None:intergenic | 45.0% |
| ! | TCTTGCATTTTGCACAGTGG+AGG | + | chr5_3:64228468-64228487 | None:intergenic | 45.0% |
| GCCATATGTACCATTGCTGA+TGG | - | chr5_3:64228499-64228518 | Msa0824740:CDS | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr5_3:64228663-64228682 | Msa0824740:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr5_3:64228663-64228682 | None:intergenic | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr5_3:64228663-64228682 | Msa0824740:intron | 45.0% | |
| GGACTCGAATCGCTTAAACA+AGG | - | chr5_3:64229225-64229244 | Msa0824740:intron | 45.0% | |
| TGAGCATCTCCAATTTCTCG+AGG | + | chr5_3:64229340-64229359 | None:intergenic | 45.0% | |
| GAGAAGATGTTGATGCAGCA+AGG | - | chr5_3:64229545-64229564 | Msa0824740:intron | 45.0% | |
| AAGGGTGACTGAACGTTTGA+GGG | - | chr5_3:64229564-64229583 | Msa0824740:CDS | 45.0% | |
| ACTAACAAGTCTAGCATGCC+TGG | + | chr5_3:64229599-64229618 | None:intergenic | 45.0% | |
| ! | TTGCATTTTGCACAGTGGAG+GGG | + | chr5_3:64228466-64228485 | None:intergenic | 45.0% |
| ! | CTTGCATTTTGCACAGTGGA+GGG | + | chr5_3:64228467-64228486 | None:intergenic | 45.0% |
| ! | TCTTGCATTTTGCACAGTGG+AGG | + | chr5_3:64228468-64228487 | None:intergenic | 45.0% |
| GCCATATGTACCATTGCTGA+TGG | - | chr5_3:64228499-64228518 | Msa0824740:CDS | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr5_3:64228663-64228682 | Msa0824740:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr5_3:64228663-64228682 | None:intergenic | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr5_3:64228663-64228682 | Msa0824740:intron | 45.0% | |
| GGACTCGAATCGCTTAAACA+AGG | - | chr5_3:64229225-64229244 | Msa0824740:intron | 45.0% | |
| TGAGCATCTCCAATTTCTCG+AGG | + | chr5_3:64229340-64229359 | None:intergenic | 45.0% | |
| GAGAAGATGTTGATGCAGCA+AGG | - | chr5_3:64229545-64229564 | Msa0824740:intron | 45.0% | |
| AAGGGTGACTGAACGTTTGA+GGG | - | chr5_3:64229564-64229583 | Msa0824740:CDS | 45.0% | |
| ACTAACAAGTCTAGCATGCC+TGG | + | chr5_3:64229599-64229618 | None:intergenic | 45.0% | |
| !! | TATATATATATATATATATG+GGG | - | chr5_3:64228629-64228648 | Msa0824740:intron | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | - | chr5_3:64228743-64228762 | Msa0824740:intron | 5.0% |
| !! | ATATATATATATATATATAG+GGG | + | chr5_3:64229143-64229162 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr5_3:64228629-64228648 | Msa0824740:intron | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | - | chr5_3:64228743-64228762 | Msa0824740:intron | 5.0% |
| !! | ATATATATATATATATATAG+GGG | + | chr5_3:64229143-64229162 | None:intergenic | 5.0% |
| AGGTGGGTGCAAGTTAACAG+TGG | - | chr5_3:64228873-64228892 | Msa0824740:intron | 50.0% | |
| GGTGGGTGCAAGTTAACAGT+GGG | - | chr5_3:64228874-64228893 | Msa0824740:intron | 50.0% | |
| GTGGGTGCAAGTTAACAGTG+GGG | - | chr5_3:64228875-64228894 | Msa0824740:intron | 50.0% | |
| TGGGTGCAAGTTAACAGTGG+GGG | - | chr5_3:64228876-64228895 | Msa0824740:intron | 50.0% | |
| GCGCCCACCTAAAAACACTA+AGG | + | chr5_3:64229109-64229128 | None:intergenic | 50.0% | |
| CAAGGGTGACTGAACGTTTG+AGG | - | chr5_3:64229563-64229582 | Msa0824740:CDS | 50.0% | |
| GTTTGAGGGAGAAAGTGACC+AGG | - | chr5_3:64229578-64229597 | Msa0824740:CDS | 50.0% | |
| AGGTGGGTGCAAGTTAACAG+TGG | - | chr5_3:64228873-64228892 | Msa0824740:intron | 50.0% | |
| GGTGGGTGCAAGTTAACAGT+GGG | - | chr5_3:64228874-64228893 | Msa0824740:intron | 50.0% | |
| GTGGGTGCAAGTTAACAGTG+GGG | - | chr5_3:64228875-64228894 | Msa0824740:intron | 50.0% | |
| TGGGTGCAAGTTAACAGTGG+GGG | - | chr5_3:64228876-64228895 | Msa0824740:intron | 50.0% | |
| GCGCCCACCTAAAAACACTA+AGG | + | chr5_3:64229109-64229128 | None:intergenic | 50.0% | |
| CAAGGGTGACTGAACGTTTG+AGG | - | chr5_3:64229563-64229582 | Msa0824740:CDS | 50.0% | |
| GTTTGAGGGAGAAAGTGACC+AGG | - | chr5_3:64229578-64229597 | Msa0824740:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64228433 | 64229636 | 64228433 | ID=Msa0824740;Name=Msa0824740 |
| chr5_3 | mRNA | 64228433 | 64229636 | 64228433 | ID=Msa0824740-mRNA-1;Parent=Msa0824740;Name=Msa0824740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|77 |
| chr5_3 | exon | 64229549 | 64229636 | 64229549 | ID=Msa0824740-mRNA-1:exon:20056;Parent=Msa0824740-mRNA-1 |
| chr5_3 | exon | 64228433 | 64228578 | 64228433 | ID=Msa0824740-mRNA-1:exon:20055;Parent=Msa0824740-mRNA-1 |
| chr5_3 | CDS | 64229549 | 64229636 | 64229549 | ID=Msa0824740-mRNA-1:cds;Parent=Msa0824740-mRNA-1 |
| chr5_3 | CDS | 64228433 | 64228578 | 64228433 | ID=Msa0824740-mRNA-1:cds;Parent=Msa0824740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
