AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041260 MtrunA17_Chr7g0269521 96.099 564 22 0 1 564 1 564 0.0 1098
Msa1041260 MtrunA17_Chr1g0175661 73.890 563 143 3 1 563 1 559 0.0 852
Msa1041260 MtrunA17_Chr1g0195301 73.982 565 136 4 1 563 1 556 0.0 852
Msa1041260 MtrunA17_Chr1g0195321 73.982 565 136 4 1 563 1 556 0.0 852
Msa1041260 MtrunA17_Chr1g0195331 73.805 565 137 4 1 563 1 556 0.0 849
Msa1041260 MtrunA17_Chr1g0195351 73.274 565 138 5 1 563 1 554 0.0 840
Msa1041260 MtrunA17_Chr7g0269511 67.228 534 167 4 34 563 36 565 0.0 736
Msa1041260 MtrunA17_Chr7g0269531 62.898 566 200 8 1 562 6 565 0.0 710
Msa1041260 MtrunA17_Chr1g0192331 50.000 556 242 8 10 562 6 528 0.0 523
Msa1041260 MtrunA17_Chr8g0354911 50.276 543 242 9 40 562 78 612 2.86e-175 509
Msa1041260 MtrunA17_Chr1g0195311 83.019 265 45 0 299 563 51 315 2.45e-167 477
Msa1041260 MtrunA17_Chr3g0080381 48.155 542 259 8 40 563 92 629 2.99e-167 489
Msa1041260 MtrunA17_Chr7g0269541 45.259 559 246 10 10 562 52 556 1.26e-145 431
Msa1041260 MtrunA17_Chr4g0011771 46.241 532 227 13 40 562 32 513 5.00e-140 415
Msa1041260 MtrunA17_Chr4g0011791 44.925 532 235 14 37 562 30 509 2.19e-132 395
Msa1041260 MtrunA17_Chr8g0391311 49.650 429 196 7 138 562 129 541 2.62e-131 394
Msa1041260 MtrunA17_Chr8g0391291 49.650 429 196 7 138 562 127 539 1.68e-130 392
Msa1041260 MtrunA17_Chr8g0345281 45.062 486 233 9 89 562 126 589 2.25e-127 385
Msa1041260 MtrunA17_Chr1g0147051 40.378 582 301 13 7 562 46 607 4.38e-127 385
Msa1041260 MtrunA17_Chr2g0302021 45.536 448 205 7 116 562 116 525 5.38e-125 377
Msa1041260 MtrunA17_Chr4g0069881 41.800 500 247 9 65 562 78 535 1.30e-124 376
Msa1041260 MtrunA17_Chr4g0069841 43.975 473 224 9 96 564 83 518 1.36e-124 376
Msa1041260 MtrunA17_Chr7g0233831 44.374 471 218 11 99 562 122 555 1.22e-120 367
Msa1041260 MtrunA17_Chr7g0233771 44.118 476 212 11 99 562 121 554 9.23e-120 365
Msa1041260 MtrunA17_Chr3g0126771 43.763 473 240 10 98 562 143 597 9.59e-120 366
Msa1041260 MtrunA17_Chr7g0272141 45.139 432 199 9 136 562 144 542 2.41e-119 363
Msa1041260 MtrunA17_Chr8g0354901 40.223 537 278 13 37 562 77 581 8.01e-119 363
Msa1041260 MtrunA17_Chr4g0011751 54.167 312 142 1 252 562 178 489 1.60e-118 359
Msa1041260 MtrunA17_Chr3g0080391 42.827 467 238 8 96 562 137 574 2.37e-118 362
Msa1041260 MtrunA17_Chr7g0233801 40.037 537 272 12 39 562 54 553 2.83e-118 361
Msa1041260 MtrunA17_Chr4g0018371 40.038 532 278 10 40 562 40 539 1.25e-117 358
Msa1041260 MtrunA17_Chr4g0069861 43.619 431 210 6 135 564 121 519 1.24e-115 353
Msa1041260 MtrunA17_Chr3g0090091 39.662 532 273 12 40 562 36 528 9.59e-114 348
Msa1041260 MtrunA17_Chr4g0069891 42.308 468 248 7 98 562 145 593 1.64e-113 350
Msa1041260 MtrunA17_Chr3g0079361 51.351 333 155 4 232 562 200 527 3.45e-112 344
Msa1041260 MtrunA17_Chr3g0079341 51.351 333 155 4 232 562 200 527 6.78e-112 343
Msa1041260 MtrunA17_Chr3g0079351 51.051 333 156 4 232 562 200 527 2.99e-111 342
Msa1041260 MtrunA17_Chr8g0345211 37.803 537 283 14 37 558 78 578 1.16e-104 327
Msa1041260 MtrunA17_Chr1g0194091 38.866 476 265 10 99 562 108 569 3.64e-103 322
Msa1041260 MtrunA17_Chr1g0194081 35.970 531 315 7 39 562 51 563 5.95e-102 319
Msa1041260 MtrunA17_Chr2g0302001 55.513 263 114 1 300 562 178 437 4.58e-101 312
Msa1041260 MtrunA17_Chr8g0384121 35.701 549 313 13 24 561 44 563 3.69e-98 309
Msa1041260 MtrunA17_Chr7g0270691 34.698 562 336 11 9 563 13 550 5.66e-98 308
Msa1041260 MtrunA17_Chr7g0272151 33.996 553 307 12 37 561 60 582 3.05e-95 302
Msa1041260 MtrunA17_Chr1g0192311 37.753 445 216 6 136 558 161 566 4.80e-94 299
Msa1041260 MtrunA17_Chr1g0192281 37.753 445 216 6 136 558 161 566 4.80e-94 299
Msa1041260 MtrunA17_Chr1g0192321 38.902 437 245 8 136 561 157 582 9.30e-94 298
Msa1041260 MtrunA17_Chr2g0301931 50.709 282 135 2 281 562 15 292 1.27e-93 288
Msa1041260 MtrunA17_Chr4g0000121 38.642 427 237 8 136 558 148 553 1.82e-92 294
Msa1041260 MtrunA17_Chr3g0129921 34.364 550 301 15 37 561 49 563 7.55e-91 290
Msa1041260 MtrunA17_Chr1g0192301 38.084 428 240 8 136 559 166 572 2.08e-90 290
Msa1041260 MtrunA17_Chr7g0234711 58.667 225 91 2 340 562 45 269 3.81e-90 278
Msa1041260 MtrunA17_Chr7g0270661 36.674 469 288 5 96 562 105 566 1.87e-88 284
Msa1041260 MtrunA17_Chr7g0270671 36.674 469 288 5 96 562 105 566 1.87e-88 284
Msa1041260 MtrunA17_Chr7g0270651 33.145 531 343 6 37 562 43 566 4.40e-88 283
Msa1041260 MtrunA17_Chr7g0270631 36.403 467 290 3 99 564 96 556 6.03e-86 288
Msa1041260 MtrunA17_Chr7g0270631 34.304 481 289 8 99 562 644 1114 1.28e-71 248
Msa1041260 MtrunA17_Chr2g0295531 32.616 558 321 13 18 558 23 542 4.28e-85 276
Msa1041260 MtrunA17_Chr4g0067601 34.633 436 255 7 135 561 157 571 8.51e-83 270
Msa1041260 MtrunA17_Chr4g0067611 35.469 437 250 8 135 561 157 571 8.62e-83 269
Msa1041260 MtrunA17_Chr5g0437831 42.560 336 176 7 234 562 58 383 4.44e-82 261
Msa1041260 MtrunA17_Chr2g0295551 36.136 440 238 9 135 561 154 563 1.63e-79 260
Msa1041260 MtrunA17_Chr8g0380581 40.979 327 183 5 234 558 54 372 4.18e-79 253
Msa1041260 MtrunA17_Chr2g0334111 41.587 315 166 6 250 562 25 323 1.39e-74 240
Msa1041260 MtrunA17_Chr7g0268241 42.222 315 166 7 250 562 50 350 7.60e-73 236
Msa1041260 MtrunA17_Chr2g0295541 32.397 463 255 7 135 561 154 594 1.75e-70 237
Msa1041260 MtrunA17_Chr7g0271381 28.673 565 343 15 15 562 35 556 3.17e-67 228
Msa1041260 MtrunA17_Chr1g0194311 36.656 311 168 8 252 551 76 368 6.29e-55 189
Msa1041260 MtrunA17_Chr6g0487101 38.033 305 161 7 258 551 93 380 3.02e-53 186
Msa1041260 MtrunA17_Chr6g0453551 33.648 318 182 8 249 553 5 306 1.02e-51 179
Msa1041260 MtrunA17_Chr7g0258341 33.974 312 182 6 250 551 90 387 1.10e-51 181
Msa1041260 MtrunA17_Chr8g0389771 36.306 314 170 8 251 551 81 377 8.84e-51 179
Msa1041260 MtrunA17_Chr7g0217941 33.648 318 182 9 249 553 5 306 3.62e-49 172
Msa1041260 MtrunA17_Chr6g0466951 36.299 281 153 6 250 525 69 328 7.42e-49 173
Msa1041260 MtrunA17_Chr6g0466961 37.809 283 146 8 250 525 40 299 7.74e-49 172
Msa1041260 MtrunA17_Chr8g0391261 56.204 137 59 1 427 562 30 166 5.42e-48 164
Msa1041260 MtrunA17_Chr1g0161731 33.333 315 183 7 245 551 44 339 4.57e-45 162
Msa1041260 MtrunA17_Chr5g0446301 33.981 309 173 8 256 551 67 357 1.73e-44 161
Msa1041260 MtrunA17_Chr2g0294321 31.366 322 192 8 240 552 46 347 2.54e-42 155
Msa1041260 MtrunA17_Chr4g0070051 30.952 336 194 12 230 551 32 343 4.46e-42 154
Msa1041260 MtrunA17_Chr5g0399221 30.312 320 194 7 247 554 60 362 2.42e-40 150
Msa1041260 MtrunA17_Chr7g0265201 29.326 341 203 8 227 551 67 385 1.50e-39 148
Msa1041260 MtrunA17_Chr2g0295851 30.841 321 182 11 242 552 47 337 2.42e-37 141
Msa1041260 MtrunA17_Chr5g0440871 32.573 307 183 7 246 551 35 318 8.49e-36 136
Msa1041260 MtrunA17_Chr2g0299431 36.885 244 122 8 234 464 40 264 7.45e-33 127
Msa1041260 MtrunA17_Chr8g0351871 30.312 320 183 11 248 553 31 324 1.58e-31 124
Msa1041260 MtrunA17_Chr4g0037751 29.524 315 191 9 247 551 68 361 6.74e-31 124
Msa1041260 MtrunA17_Chr5g0437821 41.176 136 77 2 366 499 4 138 4.07e-30 115
Msa1041260 MtrunA17_Chr5g0420831 30.172 348 203 12 222 551 36 361 1.33e-29 120
Msa1041260 MtrunA17_Chr4g0025841 31.873 251 151 5 246 496 33 263 1.87e-28 114
Msa1041260 MtrunA17_Chr6g0459781 37.640 178 92 7 249 414 12 182 1.42e-26 107
Msa1041260 MtrunA17_Chr7g0265161 32.778 180 88 4 319 493 6 157 1.04e-22 97.4
Msa1041260 MtrunA17_Chr5g0440901 35.526 152 88 2 345 496 1 142 1.14e-21 91.7
Msa1041260 MtrunA17_Chr5g0440891 38.650 163 88 5 246 407 44 195 5.94e-21 91.3
Msa1041260 MtrunA17_Chr6g0459791 41.935 124 60 3 429 551 4 116 1.27e-20 87.8
Msa1041260 MtrunA17_Chr2g0314691 30.332 211 135 5 341 551 3 201 2.08e-19 87.0
Msa1041260 MtrunA17_Chr6g0460141 39.370 127 69 5 289 407 13 139 1.56e-17 80.1
Msa1041260 MtrunA17_Chr8g0391281 36.041 197 107 7 141 334 130 310 2.63e-17 83.2
Msa1041260 MtrunA17_Chr4g0073911 30.488 164 104 4 280 436 35 195 3.82e-14 72.4
Msa1041260 MtrunA17_Chr7g0234731 38.614 101 57 2 232 332 219 314 1.71e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041260 AT4G02330.1 59.304 575 205 11 8 563 8 572 0.0 665
Msa1041260 AT1G02810.1 56.454 581 222 8 6 563 6 578 0.0 646
Msa1041260 AT2G47550.1 56.106 565 226 8 11 563 5 559 0.0 627
Msa1041260 AT3G10720.2 48.423 539 258 8 40 563 83 616 2.87e-172 502
Msa1041260 AT5G04970.1 46.154 546 260 9 40 563 88 621 1.71e-161 474
Msa1041260 AT2G45220.1 42.226 566 267 12 1 562 2 511 1.34e-132 396
Msa1041260 AT5G51490.1 42.011 557 260 15 24 562 25 536 4.34e-129 388
Msa1041260 AT3G60730.1 44.977 438 218 7 134 562 96 519 1.32e-127 384
Msa1041260 AT1G11580.1 48.471 425 187 6 137 558 158 553 3.08e-126 382
Msa1041260 AT1G11580.2 48.471 425 187 6 137 558 179 574 3.64e-126 382
Msa1041260 AT1G23200.1 40.000 580 280 14 8 562 18 554 6.59e-126 381
Msa1041260 AT1G53830.1 41.304 552 287 9 25 558 51 583 1.95e-124 378
Msa1041260 AT2G26440.1 42.243 535 273 10 38 562 39 547 3.89e-124 376
Msa1041260 AT3G10720.1 63.077 260 96 0 304 563 1 260 6.76e-124 365
Msa1041260 AT3G43270.1 55.589 331 140 4 234 563 202 526 8.97e-124 374
Msa1041260 AT3G05620.1 45.602 432 199 5 131 562 146 541 2.08e-123 374
Msa1041260 AT4G33220.1 44.856 486 220 10 99 564 68 525 7.29e-123 372
Msa1041260 AT3G14310.1 40.687 553 301 9 27 562 50 592 2.77e-122 373
Msa1041260 AT5G51500.1 41.016 551 273 15 26 562 28 540 6.90e-121 367
Msa1041260 AT3G49220.1 46.259 441 208 8 131 564 180 598 3.99e-120 367
Msa1041260 AT5G53370.1 43.908 476 227 10 98 562 139 585 8.49e-120 366
Msa1041260 AT3G49220.3 46.259 441 208 8 131 564 225 643 1.15e-119 367
Msa1041260 AT5G53370.2 43.908 476 227 10 98 562 175 621 3.08e-119 366
Msa1041260 AT4G33220.2 51.515 363 160 4 203 564 57 404 8.98e-119 357
Msa1041260 AT5G04960.1 38.139 548 283 15 30 558 50 560 2.31e-117 359
Msa1041260 AT4G02300.1 38.819 559 298 12 6 562 16 532 8.64e-115 351
Msa1041260 AT2G26450.1 38.619 536 285 13 37 562 110 611 2.67e-114 353
Msa1041260 AT3G59010.1 46.083 434 196 10 134 563 130 529 1.88e-113 348
Msa1041260 AT3G10710.1 38.961 539 284 15 29 562 63 561 2.67e-113 348
Msa1041260 AT4G00190.1 38.491 530 250 14 39 558 7 470 1.85e-112 343
Msa1041260 AT4G02320.1 41.015 473 249 10 90 558 68 514 4.47e-112 344
Msa1041260 AT1G53840.1 40.574 488 249 12 82 556 122 581 5.42e-111 343
Msa1041260 AT2G43050.1 41.414 495 235 12 72 563 75 517 5.05e-110 338
Msa1041260 AT3G47400.1 41.667 468 244 8 98 562 153 594 5.77e-106 330
Msa1041260 AT3G05610.1 38.136 472 258 5 99 563 122 566 6.81e-106 333
Msa1041260 AT4G33230.1 36.015 547 293 14 37 562 96 606 4.50e-105 328
Msa1041260 AT5G27870.1 39.041 438 225 8 135 562 157 562 3.36e-102 325
Msa1041260 AT3G06830.1 40.698 430 235 7 134 558 150 564 6.14e-100 314
Msa1041260 AT5G20860.2 46.519 316 159 4 250 562 230 538 2.24e-97 306
Msa1041260 AT3G27980.1 40.515 427 218 5 137 562 106 497 5.73e-97 304
Msa1041260 AT5G49180.1 39.813 427 241 5 134 559 156 567 7.33e-97 306
Msa1041260 AT1G11590.1 40.603 431 222 6 134 562 126 524 1.54e-95 301
Msa1041260 AT3G14300.1 41.608 423 216 9 135 553 565 960 8.13e-95 311
Msa1041260 AT4G03930.1 40.371 431 223 6 134 562 126 524 8.78e-95 299
Msa1041260 AT5G09760.1 47.134 314 153 6 246 550 237 546 6.91e-91 290
Msa1041260 AT5G09760.2 47.134 314 153 6 246 550 263 572 8.27e-91 291
Msa1041260 AT1G11370.1 50.000 258 126 1 236 493 32 286 2.61e-87 272
Msa1041260 AT4G15980.1 42.988 328 183 2 232 558 374 698 3.04e-85 279
Msa1041260 AT4G15980.2 42.988 328 183 2 232 558 384 708 5.78e-85 279
Msa1041260 AT5G64640.1 44.753 324 159 7 246 555 285 602 9.48e-83 270
Msa1041260 AT5G20860.1 40.728 302 141 3 250 548 230 496 5.35e-74 244
Msa1041260 AT2G47030.1 41.587 315 177 4 251 562 278 588 2.58e-73 245
Msa1041260 AT2G47040.1 31.504 565 337 14 37 562 42 595 1.38e-70 238
Msa1041260 AT3G62170.1 40.952 315 179 4 251 562 278 588 8.84e-70 235
Msa1041260 AT5G19730.1 35.987 314 173 7 249 551 85 381 1.78e-52 184
Msa1041260 AT2G36710.1 34.000 350 195 8 214 556 70 390 5.56e-52 183
Msa1041260 AT1G05310.1 35.577 312 177 6 250 551 91 388 9.59e-52 182
Msa1041260 AT3G17060.1 30.141 355 217 8 209 552 3 337 1.04e-50 178
Msa1041260 AT2G19150.1 32.515 326 190 8 243 558 34 339 8.77e-49 172
Msa1041260 AT3G29090.1 33.230 322 184 9 244 551 1 305 2.51e-48 171
Msa1041260 AT2G21610.1 33.003 303 183 6 249 551 50 332 4.17e-48 171
Msa1041260 AT2G21610.2 33.003 303 183 6 249 551 55 337 5.90e-48 171
Msa1041260 AT2G36700.1 31.494 308 191 5 249 551 41 333 3.33e-46 166
Msa1041260 AT5G18990.1 34.505 313 176 7 250 551 29 323 6.46e-46 164
Msa1041260 AT5G55590.1 32.704 318 185 8 246 551 78 378 9.77e-44 160
Msa1041260 AT3G24130.1 35.069 288 160 6 250 526 34 305 5.89e-43 157
Msa1041260 AT5G07430.1 32.710 321 191 8 239 551 52 355 9.30e-42 154
Msa1041260 AT5G26810.1 32.727 330 192 10 237 551 19 333 1.91e-41 152
Msa1041260 AT5G55590.2 34.221 263 146 7 246 496 78 325 6.18e-41 151
Msa1041260 AT5G47500.1 30.696 316 190 7 248 551 59 357 1.39e-39 148
Msa1041260 AT2G47280.1 30.818 318 191 8 246 553 31 329 2.05e-39 147
Msa1041260 AT2G19150.2 33.712 264 147 7 243 496 34 279 2.75e-39 145
Msa1041260 AT5G07420.1 31.776 321 194 8 239 551 52 355 5.63e-38 144
Msa1041260 AT5G61680.1 33.119 311 182 10 248 551 67 358 3.83e-37 141
Msa1041260 AT1G44980.1 40.984 183 105 1 234 416 62 241 1.23e-34 131
Msa1041260 AT1G69940.1 28.483 323 204 10 238 551 51 355 8.77e-34 132
Msa1041260 AT5G07410.1 28.829 333 208 11 230 551 41 355 1.13e-33 132

Find 95 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACAGTTGACTTCATATT+TGG 0.153800 7_1:-78848660 Msa1041260:CDS
CTACTAGCAACCGTGTTATT+TGG 0.232079 7_1:+78850280 None:intergenic
AACCAACAAACTTGTTTAGA+TGG 0.297504 7_1:-78850655 Msa1041260:CDS
TATCGCGAATGCGACATCTA+TGG 0.300622 7_1:-78848681 Msa1041260:CDS
CAAATATCATGGTCACAAAA+TGG 0.308214 7_1:-78850505 Msa1041260:CDS
TATAAAAGCTAGTGATGATT+TGG 0.325850 7_1:-78848505 Msa1041260:CDS
AAATTCTTCACCTTGAGAAA+TGG 0.336161 7_1:+78850705 None:intergenic
GTACTCAAGGACAGTTTATA+TGG 0.338879 7_1:-78848433 Msa1041260:CDS
ATCCTTCTGGTTGGCGTGAA+TGG 0.350213 7_1:-78848386 Msa1041260:CDS
GACAGTTTGATAAATCCTTC+TGG 0.365166 7_1:-78848399 Msa1041260:CDS
AGTCAATTACGGTGCCGTTT+TGG 0.368845 7_1:+78850926 None:intergenic
AGTTTAAGAATTTGCGGGAT+TGG 0.369826 7_1:+78850872 None:intergenic
TTGTCCACTGCTGGGAAGTC+GGG 0.371249 7_1:+78848599 None:intergenic
GTTTAAGAATTTGCGGGATT+GGG 0.373531 7_1:+78850873 None:intergenic
TAAAATTTCCACTTCCATCT+TGG 0.392759 7_1:+78850332 None:intergenic
GAATTTGCGGGATTGGGATA+AGG 0.395401 7_1:+78850879 None:intergenic
AATTCTTCACCTTGAGAAAT+GGG 0.399331 7_1:+78850706 None:intergenic
TTCGAAGCTGCAGCTGTAGA+AGG 0.400981 7_1:+78848746 None:intergenic
AACCATCTAAACAAGTTTGT+TGG 0.402908 7_1:+78850653 None:intergenic
AGCGTTGAATTGTCCACTGC+TGG 0.412036 7_1:+78848590 None:intergenic
AGAAAAGCAGAGTGTAAGAA+TGG 0.413989 7_1:+78851071 None:intergenic
ATCCCTAGCTGATAATTCTA+AGG 0.417042 7_1:-78851013 Msa1041260:CDS
GGTGATCATAATGTTATTGA+TGG 0.424519 7_1:-78850142 Msa1041260:CDS
TGGTTTAATTACCGCATCTT+CGG 0.427646 7_1:-78850635 Msa1041260:CDS
CGTTTCTTACCGCGACTGCT+TGG 0.433166 7_1:+78848784 None:intergenic
TACTAAGTTTAAGAATTTGC+GGG 0.437844 7_1:+78850867 None:intergenic
ATACTAGTATGAGAGTGAAT+TGG 0.446368 7_1:-78848299 Msa1041260:CDS
ACGTTCAATTCAGCAACATT+TGG 0.449707 7_1:-78850112 Msa1041260:intron
AACAATTGATGAAAGTGTTA+CGG 0.454527 7_1:-78850377 Msa1041260:CDS
GATGATTTGGCTCCGTTGAT+TGG 0.458849 7_1:-78848492 Msa1041260:CDS
AACGGCACCGTAATTGACTA+TGG 0.463464 7_1:-78850922 Msa1041260:CDS
TCTTTAAGAGCGGAAATTGT+GGG 0.468747 7_1:+78850808 None:intergenic
GCGACTGCTTGGTGTTTGCT+TGG 0.470992 7_1:+78848795 None:intergenic
GTACTAAGTTTAAGAATTTG+CGG 0.475112 7_1:+78850866 None:intergenic
GTGGACTCGCAGATTGTTTG+TGG 0.483498 7_1:+78850985 None:intergenic
GATAGTTGGTTGCCTCAAAC+TGG 0.484973 7_1:-78848210 Msa1041260:CDS
TATGCAGAGTATAATAATAC+AGG 0.485066 7_1:-78848333 Msa1041260:CDS
ATAACATTTCGCAACACGGC+TGG 0.488240 7_1:-78848819 Msa1041260:CDS
ATTGTGATTGTTAACCAAGA+TGG 0.492084 7_1:-78850346 Msa1041260:CDS
TTATCAGCTAGGGATGATAA+TGG 0.495429 7_1:+78851021 None:intergenic
CTTGCAGCTGTGGTTGCACA+AGG 0.496740 7_1:-78848858 Msa1041260:intron
ACTCTACTTGCTAACCAAAA+CGG 0.505690 7_1:-78850940 Msa1041260:CDS
ATCTTTAAGAGCGGAAATTG+TGG 0.509483 7_1:+78850807 None:intergenic
AAGAAGTACTTGATGATGGT+TGG 0.510321 7_1:-78850193 Msa1041260:CDS
CAAGCAGTCGCGGTAAGAAA+CGG 0.512615 7_1:-78848783 Msa1041260:CDS
TACCGCATCTTCGGATCAAA+CGG 0.513345 7_1:-78850626 Msa1041260:CDS
GTCCTTGAGTACTCCTTCCA+TGG 0.514153 7_1:+78848444 None:intergenic
GAAACGACCATAGTCAATTA+CGG 0.518037 7_1:+78850915 None:intergenic
ACTTGATGATGGTTGGAGAT+GGG 0.527173 7_1:-78850186 Msa1041260:CDS
TACTTGATGATGGTTGGAGA+TGG 0.529077 7_1:-78850187 Msa1041260:CDS
AATGTTCTTCCCATTTCTCA+AGG 0.529646 7_1:-78850715 Msa1041260:CDS
TTCTACAGCTGCAGCTTCGA+AGG 0.532295 7_1:-78848744 Msa1041260:CDS
AGTATGAGAGTGAATTGGAT+TGG 0.532578 7_1:-78848294 Msa1041260:CDS
ACTATGAATCTTTGTATCAT+CGG 0.534932 7_1:+78850576 None:intergenic
AAACAAGAAGTACTTGATGA+TGG 0.536365 7_1:-78850197 Msa1041260:CDS
ATTGTCCACTGCTGGGAAGT+CGG 0.542110 7_1:+78848598 None:intergenic
TAACATAACATTTCGCAACA+CGG 0.542157 7_1:-78848823 Msa1041260:CDS
ATTAATCGAACGATTATCAC+TGG 0.547300 7_1:-78850163 Msa1041260:CDS
AAGTATGAAACACCAGTTTG+AGG 0.552647 7_1:+78848198 None:intergenic
GAGTATAATAATACAGGACT+TGG 0.553401 7_1:-78848327 Msa1041260:CDS
CAGTGAAAACATACCTTGGT+AGG 0.555300 7_1:-78848467 Msa1041260:CDS
GACTCGCAGATTGTTTGTGG+TGG 0.559033 7_1:+78850988 None:intergenic
AAACATACCTTGGTAGGCCA+TGG 0.560177 7_1:-78848461 Msa1041260:CDS
TGTTAAAACAGCACTAAGCA+AGG 0.561946 7_1:+78850678 None:intergenic
GTTTGATAAATCCTTCTGGT+TGG 0.562814 7_1:-78848395 Msa1041260:CDS
GGTTGCACAAGGGTTCTTAG+CGG 0.564354 7_1:-78848847 Msa1041260:CDS
ATTGTTAACCAAGATGGAAG+TGG 0.567528 7_1:-78850340 Msa1041260:CDS
TTCGCGATAAAATTGTCTCA+TGG 0.571446 7_1:+78848695 None:intergenic
ACTGGTGTTTCATACTTGAG+TGG 0.576700 7_1:-78848192 Msa1041260:CDS
GGACCTTAGAATTATCAGCT+AGG 0.579500 7_1:+78851010 None:intergenic
GGCCATGGAAGGAGTACTCA+AGG 0.580211 7_1:-78848446 Msa1041260:CDS
CTGGTTGGCGTGAATGGAGT+GGG 0.588896 7_1:-78848380 Msa1041260:CDS
TAATGGTAATGATGTCAAGA+TGG 0.590758 7_1:+78851038 None:intergenic
GCGTTGAATTGTCCACTGCT+GGG 0.593272 7_1:+78848591 None:intergenic
GACCTTAGAATTATCAGCTA+GGG 0.594297 7_1:+78851011 None:intergenic
TGTCCACTGCTGGGAAGTCG+GGG 0.596925 7_1:+78848600 None:intergenic
TGGATCTGTTCGGCCTTGAG+CGG 0.598244 7_1:+78848563 None:intergenic
AATAACACGGTTGCTAGTAG+TGG 0.598741 7_1:-78850277 Msa1041260:CDS
TATCCCCGACTTCCCAGCAG+TGG 0.603880 7_1:-78848603 Msa1041260:CDS
CTCCATTCACGCCAACCAGA+AGG 0.609653 7_1:+78848384 None:intergenic
TCTGGTTGGCGTGAATGGAG+TGG 0.611631 7_1:-78848381 Msa1041260:CDS
TTCAACGCTATAACCGCTCA+AGG 0.613112 7_1:-78848576 Msa1041260:CDS
ATACCTTGGTAGGCCATGGA+AGG 0.613409 7_1:-78848457 Msa1041260:CDS
ACTCGCAGATTGTTTGTGGT+GGG 0.616803 7_1:+78850989 None:intergenic
CACCGTTTGATCCGAAGATG+CGG 0.621833 7_1:+78850624 None:intergenic
GGTACAGTGAAAACATACCT+TGG 0.633037 7_1:-78848471 Msa1041260:CDS
GAAGCTGCAGCTGTAGAAGG+TGG 0.633472 7_1:+78848749 None:intergenic
GATTCAGCTAGAAATCGTCA+TGG 0.643888 7_1:-78850415 Msa1041260:CDS
ACTCCTTCCATGGCCTACCA+AGG 0.644437 7_1:+78848454 None:intergenic
ATTCAGCTAGAAATCGTCAT+GGG 0.648742 7_1:-78850414 Msa1041260:CDS
AAGCAAACACCAAGCAGTCG+CGG 0.652116 7_1:-78848793 Msa1041260:CDS
GAATTGGCAATCTTTAAGAG+CGG 0.665131 7_1:+78850798 None:intergenic
TTGCAGCTGTGGTTGCACAA+GGG 0.674966 7_1:-78848857 Msa1041260:intron
ACAGATCCAAATCAAAACAC+AGG 0.676474 7_1:-78848549 Msa1041260:CDS
AAACGTTGCACCAAATAACA+CGG 0.679707 7_1:-78850290 Msa1041260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTTTTATAATA+AGG + chr7_1:78849559-78849578 None:intergenic 0.0%
!!! AATTTTTTTTCCTTATAATA+CGG + chr7_1:78849521-78849540 None:intergenic 10.0%
!!! CAAATAAACATTTTTTTTTA+TGG - chr7_1:78849940-78849959 Msa1041260:intron 10.0%
!!! TTTAGTAAGTTTTTTTTATA+AGG - chr7_1:78850118-78850137 Msa1041260:CDS 10.0%
!!! TTAGTAAGTTTTTTTTATAA+GGG - chr7_1:78850119-78850138 Msa1041260:CDS 10.0%
!! TTAATTTATCACATGTATTT+AGG - chr7_1:78849432-78849451 Msa1041260:intron 15.0%
!! GTATTATAAGGAAAAAAAAT+TGG - chr7_1:78849520-78849539 Msa1041260:intron 15.0%
!!! TTTTTTTTATAAGGGATATT+TGG - chr7_1:78850127-78850146 Msa1041260:CDS 15.0%
!! ACAAAAAAACACAAATATCA+TGG - chr7_1:78848753-78848772 Msa1041260:CDS 20.0%
!! TAATTCATGTTTAAGTAAAG+TGG + chr7_1:78849384-78849403 None:intergenic 20.0%
!!! TCATGCATTTTATTTTTTGA+GGG + chr7_1:78849497-78849516 None:intergenic 20.0%
!!! TTCATGCATTTTATTTTTTG+AGG + chr7_1:78849498-78849517 None:intergenic 20.0%
!! TATTAAAAATATACTCACTC+TGG + chr7_1:78850015-78850034 None:intergenic 20.0%
!!! ATGCATACAACTTTTTTTAT+TGG - chr7_1:78850156-78850175 Msa1041260:CDS 20.0%
!! TAAAGAAAATGACTTATGAA+TGG + chr7_1:78850225-78850244 None:intergenic 20.0%
!!! GATTAAGTGTGATTTTATAA+AGG + chr7_1:78850250-78850269 None:intergenic 20.0%
!!! AGTTTATATGGAATGTTTTA+TGG - chr7_1:78850848-78850867 Msa1041260:CDS 20.0%
! TACTAAGTTTAAGAATTTGC+GGG + chr7_1:78848405-78848424 None:intergenic 25.0%
! GTACTAAGTTTAAGAATTTG+CGG + chr7_1:78848406-78848425 None:intergenic 25.0%
!!! GATTTATTTTGAAGATGAGA+AGG + chr7_1:78848428-78848447 None:intergenic 25.0%
! ACTATGAATCTTTGTATCAT+CGG + chr7_1:78848696-78848715 None:intergenic 25.0%
!! AGACATTTGAATTTTCACAA+CGG - chr7_1:78848788-78848807 Msa1041260:CDS 25.0%
!! ACTTTATCTGACATTTTCAA+CGG + chr7_1:78848821-78848840 None:intergenic 25.0%
!!! AACAATTGATGAAAGTGTTA+CGG - chr7_1:78848892-78848911 Msa1041260:intron 25.0%
!! TTTCTGATTTTTGTTACTGA+GGG - chr7_1:78849019-78849038 Msa1041260:intron 25.0%
!!! ATCAAGTACTTCTTGTTTTT+GGG + chr7_1:78849070-78849089 None:intergenic 25.0%
!! ATAATGCTAAAAACTTTTCC+TGG - chr7_1:78849641-78849660 Msa1041260:intron 25.0%
!! TTTTCAGTATTTCTTTTTCC+AGG + chr7_1:78849662-78849681 None:intergenic 25.0%
!!! ACTTTCAAAGTCTTGTTTAA+CGG + chr7_1:78849793-78849812 None:intergenic 25.0%
! AAGTATATATGATCATCTCT+TGG - chr7_1:78850089-78850108 Msa1041260:intron 25.0%
! GATTAAGTGTGATTGAATTT+AGG + chr7_1:78850203-78850222 None:intergenic 25.0%
! ATATCATAAAGTGAGCATAA+AGG + chr7_1:78850390-78850409 None:intergenic 25.0%
! TATAAAAGCTAGTGATGATT+TGG - chr7_1:78850764-78850783 Msa1041260:CDS 25.0%
! TATGCAGAGTATAATAATAC+AGG - chr7_1:78850936-78850955 Msa1041260:CDS 25.0%
!! TTTTACAGTGGATAACTTTT+TGG - chr7_1:78851031-78851050 Msa1041260:CDS 25.0%
! TAATGGTAATGATGTCAAGA+TGG + chr7_1:78848234-78848253 None:intergenic 30.0%
! AATTTTGTTGAGCTAGGAAT+TGG + chr7_1:78848490-78848509 None:intergenic 30.0%
! ATTCGAAATTTTGTTGAGCT+AGG + chr7_1:78848496-78848515 None:intergenic 30.0%
AATTCTTCACCTTGAGAAAT+GGG + chr7_1:78848566-78848585 None:intergenic 30.0%
AAATTCTTCACCTTGAGAAA+TGG + chr7_1:78848567-78848586 None:intergenic 30.0%
! AACCAACAAACTTGTTTAGA+TGG - chr7_1:78848614-78848633 Msa1041260:CDS 30.0%
AACCATCTAAACAAGTTTGT+TGG + chr7_1:78848619-78848638 None:intergenic 30.0%
!!! TCCCTTGCTCTATTTTTAAA+GGG - chr7_1:78848719-78848738 Msa1041260:CDS 30.0%
! ACCCTTTAAAAATAGAGCAA+GGG + chr7_1:78848723-78848742 None:intergenic 30.0%
! AACCCTTTAAAAATAGAGCA+AGG + chr7_1:78848724-78848743 None:intergenic 30.0%
!!! TTGCTCTATTTTTAAAGGGT+TGG - chr7_1:78848723-78848742 Msa1041260:CDS 30.0%
!!! TGCTCTATTTTTAAAGGGTT+GGG - chr7_1:78848724-78848743 Msa1041260:CDS 30.0%
CAAATATCATGGTCACAAAA+TGG - chr7_1:78848764-78848783 Msa1041260:CDS 30.0%
ATTGTGATTGTTAACCAAGA+TGG - chr7_1:78848923-78848942 Msa1041260:intron 30.0%
TAAAATTTCCACTTCCATCT+TGG + chr7_1:78848940-78848959 None:intergenic 30.0%
! CTTTCTGATTTTTGTTACTG+AGG - chr7_1:78849018-78849037 Msa1041260:intron 30.0%
!!! CATCAAGTACTTCTTGTTTT+TGG + chr7_1:78849071-78849090 None:intergenic 30.0%
!! AAACAAGAAGTACTTGATGA+TGG - chr7_1:78849072-78849091 Msa1041260:intron 30.0%
ATTAATCGAACGATTATCAC+TGG - chr7_1:78849106-78849125 Msa1041260:intron 30.0%
GGTGATCATAATGTTATTGA+TGG - chr7_1:78849127-78849146 Msa1041260:intron 30.0%
TCATGCATATGCTATAAGTA+AGG + chr7_1:78849409-78849428 None:intergenic 30.0%
! CACATGTATTTAGGATTATG+TGG - chr7_1:78849441-78849460 Msa1041260:intron 30.0%
!!! GCATTTTATTTTTTGAGGGA+GGG + chr7_1:78849493-78849512 None:intergenic 30.0%
!!! TGCATTTTATTTTTTGAGGG+AGG + chr7_1:78849494-78849513 None:intergenic 30.0%
AATGCATGAACCGTATTATA+AGG - chr7_1:78849508-78849527 Msa1041260:intron 30.0%
TTGTAAGGTAGTAATCTAGA+TGG + chr7_1:78850272-78850291 None:intergenic 30.0%
! TCTAGATGGATGATTTTGTA+AGG + chr7_1:78850287-78850306 None:intergenic 30.0%
ATACCAAGAAATACACTTTG+AGG + chr7_1:78850316-78850335 None:intergenic 30.0%
TAACATAACATTTCGCAACA+CGG - chr7_1:78850446-78850465 Msa1041260:CDS 30.0%
!!! TGTTTTGATTTGGATCTGTT+CGG + chr7_1:78850719-78850738 None:intergenic 30.0%
GAGTATAATAATACAGGACT+TGG - chr7_1:78850942-78850961 Msa1041260:CDS 30.0%
ATACTAGTATGAGAGTGAAT+TGG - chr7_1:78850970-78850989 Msa1041260:CDS 30.0%
AGAAAAGCAGAGTGTAAGAA+TGG + chr7_1:78848201-78848220 None:intergenic 35.0%
TTATCAGCTAGGGATGATAA+TGG + chr7_1:78848251-78848270 None:intergenic 35.0%
ATCCCTAGCTGATAATTCTA+AGG - chr7_1:78848256-78848275 Msa1041260:CDS 35.0%
GACCTTAGAATTATCAGCTA+GGG + chr7_1:78848261-78848280 None:intergenic 35.0%
TTTGCAAAAAGGAGGGTTTA+CGG + chr7_1:78848309-78848328 None:intergenic 35.0%
! GTAGAGTTTTGCAAAAAGGA+GGG + chr7_1:78848316-78848335 None:intergenic 35.0%
! AGTAGAGTTTTGCAAAAAGG+AGG + chr7_1:78848317-78848336 None:intergenic 35.0%
! GCAAGTAGAGTTTTGCAAAA+AGG + chr7_1:78848320-78848339 None:intergenic 35.0%
! ACTCTACTTGCTAACCAAAA+CGG - chr7_1:78848329-78848348 Msa1041260:CDS 35.0%
GAAACGACCATAGTCAATTA+CGG + chr7_1:78848357-78848376 None:intergenic 35.0%
GTTTAAGAATTTGCGGGATT+GGG + chr7_1:78848399-78848418 None:intergenic 35.0%
AGTTTAAGAATTTGCGGGAT+TGG + chr7_1:78848400-78848419 None:intergenic 35.0%
! TCTTTAAGAGCGGAAATTGT+GGG + chr7_1:78848464-78848483 None:intergenic 35.0%
! ATCTTTAAGAGCGGAAATTG+TGG + chr7_1:78848465-78848484 None:intergenic 35.0%
! GAATTGGCAATCTTTAAGAG+CGG + chr7_1:78848474-78848493 None:intergenic 35.0%
AATGTTCTTCCCATTTCTCA+AGG - chr7_1:78848554-78848573 Msa1041260:CDS 35.0%
TGTTAAAACAGCACTAAGCA+AGG + chr7_1:78848594-78848613 None:intergenic 35.0%
TGGTTTAATTACCGCATCTT+CGG - chr7_1:78848634-78848653 Msa1041260:CDS 35.0%
!!! GTCCCTTGCTCTATTTTTAA+AGG - chr7_1:78848718-78848737 Msa1041260:CDS 35.0%
!!! CTATTTTTAAAGGGTTGGGT+TGG - chr7_1:78848728-78848747 Msa1041260:CDS 35.0%
ATTCAGCTAGAAATCGTCAT+GGG - chr7_1:78848855-78848874 Msa1041260:intron 35.0%
ATTGTTAACCAAGATGGAAG+TGG - chr7_1:78848929-78848948 Msa1041260:intron 35.0%
AAACGTTGCACCAAATAACA+CGG - chr7_1:78848979-78848998 Msa1041260:intron 35.0%
!! AAGAAGTACTTGATGATGGT+TGG - chr7_1:78849076-78849095 Msa1041260:intron 35.0%
ACGTTCAATTCAGCAACATT+TGG - chr7_1:78849157-78849176 Msa1041260:intron 35.0%
AGTTGTCATGATGTTGTAGT+CGG + chr7_1:78849725-78849744 None:intergenic 35.0%
AAATATACTCACTCTGGTCA+TGG + chr7_1:78850009-78850028 None:intergenic 35.0%
!! CTTTGAGGTAGTAATCTAGA+TGG + chr7_1:78850301-78850320 None:intergenic 35.0%
CTACCTCAAAGTGTATTTCT+TGG - chr7_1:78850310-78850329 Msa1041260:CDS 35.0%
TTATGATATACTTGCAGCTG+TGG - chr7_1:78850401-78850420 Msa1041260:CDS 35.0%
TTCGCGATAAAATTGTCTCA+TGG + chr7_1:78850577-78850596 None:intergenic 35.0%
! GGAACAGTTGACTTCATATT+TGG - chr7_1:78850609-78850628 Msa1041260:CDS 35.0%
ACAGATCCAAATCAAAACAC+AGG - chr7_1:78850720-78850739 Msa1041260:CDS 35.0%
!!! GAAGTTCCTGTGTTTTGATT+TGG + chr7_1:78850729-78850748 None:intergenic 35.0%
! GTTTTCACTGTACCAATCAA+CGG + chr7_1:78850792-78850811 None:intergenic 35.0%
GTACTCAAGGACAGTTTATA+TGG - chr7_1:78850836-78850855 Msa1041260:CDS 35.0%
GACAGTTTGATAAATCCTTC+TGG - chr7_1:78850870-78850889 Msa1041260:CDS 35.0%
GTTTGATAAATCCTTCTGGT+TGG - chr7_1:78850874-78850893 Msa1041260:CDS 35.0%
AGTATGAGAGTGAATTGGAT+TGG - chr7_1:78850975-78850994 Msa1041260:CDS 35.0%
! TGATGCTGCTAATTTTACAG+TGG - chr7_1:78851019-78851038 Msa1041260:CDS 35.0%
! ACAGTGGATAACTTTTTGGA+TGG - chr7_1:78851035-78851054 Msa1041260:CDS 35.0%
! CAGTGGATAACTTTTTGGAT+GGG - chr7_1:78851036-78851055 Msa1041260:CDS 35.0%
! AGTGGATAACTTTTTGGATG+GGG - chr7_1:78851037-78851056 Msa1041260:CDS 35.0%
AAGTATGAAACACCAGTTTG+AGG + chr7_1:78851074-78851093 None:intergenic 35.0%
GGACCTTAGAATTATCAGCT+AGG + chr7_1:78848262-78848281 None:intergenic 40.0%
! GGGATTGGGATAAGGATTTT+CGG + chr7_1:78848385-78848404 None:intergenic 40.0%
GATTCAGCTAGAAATCGTCA+TGG - chr7_1:78848854-78848873 Msa1041260:CDS 40.0%
! CTACTAGCAACCGTGTTATT+TGG + chr7_1:78848992-78849011 None:intergenic 40.0%
AATAACACGGTTGCTAGTAG+TGG - chr7_1:78848992-78849011 Msa1041260:intron 40.0%
!! TACTTGATGATGGTTGGAGA+TGG - chr7_1:78849082-78849101 Msa1041260:intron 40.0%
!! ACTTGATGATGGTTGGAGAT+GGG - chr7_1:78849083-78849102 Msa1041260:intron 40.0%
!!! GATGCTAGCTAGCTTTTGAT+TGG + chr7_1:78849303-78849322 None:intergenic 40.0%
! TTGACTACTCTTTTGAACGC+TGG - chr7_1:78849813-78849832 Msa1041260:intron 40.0%
GGTACAGTGAAAACATACCT+TGG - chr7_1:78850798-78850817 Msa1041260:CDS 40.0%
CAGTGAAAACATACCTTGGT+AGG - chr7_1:78850802-78850821 Msa1041260:CDS 40.0%
! ACTTTTTGGATGGGGATAGT+TGG - chr7_1:78851045-78851064 Msa1041260:CDS 40.0%
ACTGGTGTTTCATACTTGAG+TGG - chr7_1:78851077-78851096 Msa1041260:CDS 40.0%
ACTCGCAGATTGTTTGTGGT+GGG + chr7_1:78848283-78848302 None:intergenic 45.0%
!!! AGTCAATTACGGTGCCGTTT+TGG + chr7_1:78848346-78848365 None:intergenic 45.0%
AACGGCACCGTAATTGACTA+TGG - chr7_1:78848347-78848366 Msa1041260:CDS 45.0%
GAATTTGCGGGATTGGGATA+AGG + chr7_1:78848393-78848412 None:intergenic 45.0%
TACCGCATCTTCGGATCAAA+CGG - chr7_1:78848643-78848662 Msa1041260:CDS 45.0%
ATAACATTTCGCAACACGGC+TGG - chr7_1:78850450-78850469 Msa1041260:CDS 45.0%
TATCGCGAATGCGACATCTA+TGG - chr7_1:78850588-78850607 Msa1041260:CDS 45.0%
TTCAACGCTATAACCGCTCA+AGG - chr7_1:78850693-78850712 Msa1041260:CDS 45.0%
! GATGATTTGGCTCCGTTGAT+TGG - chr7_1:78850777-78850796 Msa1041260:CDS 45.0%
AAACATACCTTGGTAGGCCA+TGG - chr7_1:78850808-78850827 Msa1041260:CDS 45.0%
GATAGTTGGTTGCCTCAAAC+TGG - chr7_1:78851059-78851078 Msa1041260:CDS 45.0%
!! TTATATAGTTAATATAAAAT+AGG - chr7_1:78849683-78849702 Msa1041260:intron 5.0%
!! TATATAGTTAATATAAAATA+GGG - chr7_1:78849684-78849703 Msa1041260:intron 5.0%
GACTCGCAGATTGTTTGTGG+TGG + chr7_1:78848284-78848303 None:intergenic 50.0%
GTGGACTCGCAGATTGTTTG+TGG + chr7_1:78848287-78848306 None:intergenic 50.0%
GCAAAAAGGAGGGTTTACGG+TGG + chr7_1:78848306-78848325 None:intergenic 50.0%
CACCGTTTGATCCGAAGATG+CGG + chr7_1:78848648-78848667 None:intergenic 50.0%
TCTAAGCGTACTCATGCGCA+TGG + chr7_1:78849274-78849293 None:intergenic 50.0%
TTGCAGCTGTGGTTGCACAA+GGG - chr7_1:78850412-78850431 Msa1041260:CDS 50.0%
GGTTGCACAAGGGTTCTTAG+CGG - chr7_1:78850422-78850441 Msa1041260:CDS 50.0%
AAGCAAACACCAAGCAGTCG+CGG - chr7_1:78850476-78850495 Msa1041260:CDS 50.0%
CAAGCAGTCGCGGTAAGAAA+CGG - chr7_1:78850486-78850505 Msa1041260:CDS 50.0%
TTCGAAGCTGCAGCTGTAGA+AGG + chr7_1:78850526-78850545 None:intergenic 50.0%
TTCTACAGCTGCAGCTTCGA+AGG - chr7_1:78850525-78850544 Msa1041260:CDS 50.0%
ATTGTCCACTGCTGGGAAGT+CGG + chr7_1:78850674-78850693 None:intergenic 50.0%
GCGTTGAATTGTCCACTGCT+GGG + chr7_1:78850681-78850700 None:intergenic 50.0%
! AGCGTTGAATTGTCCACTGC+TGG + chr7_1:78850682-78850701 None:intergenic 50.0%
ATACCTTGGTAGGCCATGGA+AGG - chr7_1:78850812-78850831 Msa1041260:CDS 50.0%
GTCCTTGAGTACTCCTTCCA+TGG + chr7_1:78850828-78850847 None:intergenic 50.0%
! ATCCTTCTGGTTGGCGTGAA+TGG - chr7_1:78850883-78850902 Msa1041260:CDS 50.0%
CTTGCAGCTGTGGTTGCACA+AGG - chr7_1:78850411-78850430 Msa1041260:CDS 55.0%
!! GCGACTGCTTGGTGTTTGCT+TGG + chr7_1:78850477-78850496 None:intergenic 55.0%
CGTTTCTTACCGCGACTGCT+TGG + chr7_1:78850488-78850507 None:intergenic 55.0%
GAAGCTGCAGCTGTAGAAGG+TGG + chr7_1:78850523-78850542 None:intergenic 55.0%
TTGTCCACTGCTGGGAAGTC+GGG + chr7_1:78850673-78850692 None:intergenic 55.0%
TGGATCTGTTCGGCCTTGAG+CGG + chr7_1:78850709-78850728 None:intergenic 55.0%
ACTCCTTCCATGGCCTACCA+AGG + chr7_1:78850818-78850837 None:intergenic 55.0%
!! GGCCATGGAAGGAGTACTCA+AGG - chr7_1:78850823-78850842 Msa1041260:CDS 55.0%
CTCCATTCACGCCAACCAGA+AGG + chr7_1:78850888-78850907 None:intergenic 55.0%
TCTGGTTGGCGTGAATGGAG+TGG - chr7_1:78850888-78850907 Msa1041260:CDS 55.0%
CTGGTTGGCGTGAATGGAGT+GGG - chr7_1:78850889-78850908 Msa1041260:CDS 55.0%
TATCCCCGACTTCCCAGCAG+TGG - chr7_1:78850666-78850685 Msa1041260:CDS 60.0%
TGTCCACTGCTGGGAAGTCG+GGG + chr7_1:78850672-78850691 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 78848179 78851112 78848179 ID=Msa1041260;Name=Msa1041260
chr7_1 mRNA 78848179 78851112 78848179 ID=Msa1041260-mRNA-1;Parent=Msa1041260;Name=Msa1041260-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|2|0|564
chr7_1 exon 78850113 78851112 78850113 ID=Msa1041260-mRNA-1:exon:21125;Parent=Msa1041260-mRNA-1
chr7_1 exon 78848179 78848873 78848179 ID=Msa1041260-mRNA-1:exon:21124;Parent=Msa1041260-mRNA-1
chr7_1 CDS 78850113 78851112 78850113 ID=Msa1041260-mRNA-1:cds;Parent=Msa1041260-mRNA-1
chr7_1 CDS 78848179 78848873 78848179 ID=Msa1041260-mRNA-1:cds;Parent=Msa1041260-mRNA-1
Gene Sequence

>Msa1041260

ATGGCTTTCAAGAACTTTTCCATTCTTACACTCTGCTTTTCTCTTTCACTTTCCATCTTGACATCATTACCATTATCATCCCTAGCTGATAATTCTAAGGTCCCACCACAAACAATCTGCGAGTCCACCGTAAACCCTCCTTTTTGCAAAACTCTACTTGCTAACCAAAACGGCACCGTAATTGACTATGGTCGTTTCTCTATCCGAAAATCCTTATCCCAATCCCGCAAATTCTTAAACTTAGTACCTTCTCATCTTCAAAATAAATCATCTTTGTCACAACCCACAATTTCCGCTCTTAAAGATTGCCAATTCCTAGCTCAACAAAATTTCGAATTCTTAACAAACACTCATCAAACTGCTAATAAAACTAGCAATGTTCTTCCCATTTCTCAAGGTGAAGAATTTCAAACCTTGCTTAGTGCTGTTTTAACAAACCAACAAACTTGTTTAGATGGTTTAATTACCGCATCTTCGGATCAAACGGTGATTAATGATTTTTCATCAACAATTTCCGATGATACAAAGATTCATAGTGTGTCCCTTGCTCTATTTTTAAAGGGTTGGGTTGGTGACAAAAAAACACAAATATCATGGTCACAAAATGGAAGACATTTGAATTTTCACAACGGTCGTTTACCGTTGAAAATGTCAGATAAAGTACGTGCTATTTATGATTCAGCTAGAAATCGTCATGGGCGAAAGTTACTTCAAACAATTGATGAAAGTGTTACGGTAAGTGAAATTGTGATTGTTAACCAAGATGGAAGTGGAAATTTTACAACTATTAATGATGCTATAAACGTTGCACCAAATAACACGGTTGCTAGTAGTGGTTACTTTCTGATTTTTGTTACTGAGGGTGTGTATCAAGAGTATGTATCTATACCCAAAAACAAGAAGTACTTGATGATGGTTGGAGATGGGATTAATCGAACGATTATCACTGGTGATCATAATGTTATTGATGGTTCTACAACGTTCAATTCAGCAACATTTGCTGTGGTTGCACAAGGGTTCTTAGCGGTTAACATAACATTTCGCAACACGGCTGGACCAAGCAAACACCAAGCAGTCGCGGTAAGAAACGGAGCTGATTTGTCCACCTTCTACAGCTGCAGCTTCGAAGGCTATCAAGATACTTTGTACACACATTCCATGAGACAATTTTATCGCGAATGCGACATCTATGGAACAGTTGACTTCATATTTGGAAATGCTGCAGTTGTTTTACAATCTTGCAACATATATCCCCGACTTCCCAGCAGTGGACAATTCAACGCTATAACCGCTCAAGGCCGAACAGATCCAAATCAAAACACAGGAACTTCTATACATAATGCAACTATAAAAGCTAGTGATGATTTGGCTCCGTTGATTGGTACAGTGAAAACATACCTTGGTAGGCCATGGAAGGAGTACTCAAGGACAGTTTATATGGAATGTTTTATGGACAGTTTGATAAATCCTTCTGGTTGGCGTGAATGGAGTGGGAATTTTGCATTAAGCACATTATATTATGCAGAGTATAATAATACAGGACTTGGTTCAGATACTAGTATGAGAGTGAATTGGATTGGTTATCATCTTATTAATGCTACTGATGCTGCTAATTTTACAGTGGATAACTTTTTGGATGGGGATAGTTGGTTGCCTCAAACTGGTGTTTCATACTTGAGTGGATTGATCATATAA
Protein sequence

>Msa1041260

MAFKNFSILTLCFSLSLSILTSLPLSSLADNSKVPPQTICESTVNPPFCKTLLANQNGTVIDYGRFSIRKSLSQSRKFLNLVPSHLQNKSSLSQPTISALKDCQFLAQQNFEFLTNTHQTANKTSNVLPISQGEEFQTLLSAVLTNQQTCLDGLITASSDQTVINDFSSTISDDTKIHSVSLALFLKGWVGDKKTQISWSQNGRHLNFHNGRLPLKMSDKVRAIYDSARNRHGRKLLQTIDESVTVSEIVIVNQDGSGNFTTINDAINVAPNNTVASSGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVIDGSTTFNSATFAVVAQGFLAVNITFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQSCNIYPRLPSSGQFNAITAQGRTDPNQNTGTSIHNATIKASDDLAPLIGTVKTYLGRPWKEYSRTVYMECFMDSLINPSGWREWSGNFALSTLYYAEYNNTGLGSDTSMRVNWIGYHLINATDAANFTVDNFLDGDSWLPQTGVSYLSGLII*