Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825640 | XP_003617956.1 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825640 | sp|Q84N37|PVIP_PEA | 92.593 | 513 | 38 | 0 | 53 | 565 | 1 | 513 | 0.0 | 981 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825640 | G7KEP0 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0695140 | Msa0825640 | 0.805464 | 1.318050e-49 | -8.615850e-47 |
| Msa0737430 | Msa0825640 | 0.860542 | 1.920469e-63 | -8.615850e-47 |
| Msa0744440 | Msa0825640 | 0.908827 | 1.116897e-81 | -8.615850e-47 |
| Msa0816630 | Msa0825640 | 0.812166 | 4.861625e-51 | -8.615850e-47 |
| Msa0825610 | Msa0825640 | 0.847191 | 1.351488e-59 | -8.615850e-47 |
| Msa0825640 | Msa0863940 | 0.807378 | 5.203843e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825640 | MtrunA17_Chr5g0447621 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| Msa0825640 | MtrunA17_Chr8g0376011 | 36.761 | 457 | 271 | 7 | 74 | 522 | 325 | 771 | 4.08e-87 | 286 |
| Msa0825640 | MtrunA17_Chr4g0019561 | 37.363 | 455 | 268 | 10 | 92 | 544 | 748 | 1187 | 8.57e-86 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825640 | AT5G48160.2 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| Msa0825640 | AT5G48160.1 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| Msa0825640 | AT3G07780.3 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| Msa0825640 | AT3G07780.1 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| Msa0825640 | AT3G07780.2 | 67.077 | 568 | 170 | 7 | 1 | 565 | 24 | 577 | 0.0 | 739 |
| Msa0825640 | AT3G63500.1 | 33.400 | 500 | 294 | 9 | 13 | 506 | 374 | 840 | 1.99e-78 | 265 |
| Msa0825640 | AT3G63500.2 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.12e-77 | 266 |
| Msa0825640 | AT3G63500.3 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.12e-77 | 266 |
| Msa0825640 | AT1G14740.1 | 34.396 | 439 | 243 | 6 | 89 | 522 | 305 | 703 | 7.12e-73 | 247 |
Find 166 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTTAAACTTGAAAATT+AGG | 0.148834 | 5_3:+65571002 | Msa0825640:three_prime_UTR |
| TCCCTGAATTCCAGTATTTA+TGG | 0.176236 | 5_3:-65569215 | None:intergenic |
| AGGAGAGAGAAAGGGGATTT+AGG | 0.191765 | 5_3:-65567498 | None:intergenic |
| CTAATGACTGCCACCCTTTC+CGG | 0.193878 | 5_3:+65570742 | Msa0825640:CDS |
| ATTAATTATAAGCACTTAAT+AGG | 0.209293 | 5_3:-65570984 | None:intergenic |
| AAATAAACTTAGCAACTAAT+TGG | 0.211452 | 5_3:-65571096 | None:intergenic |
| GTAAAGGAGATCATGGATTT+TGG | 0.213920 | 5_3:-65570691 | None:intergenic |
| TGCCATAAATACTGGAATTC+AGG | 0.237888 | 5_3:+65569213 | Msa0825640:CDS |
| CTTGAGTTCTTCTGCTTCTC+TGG | 0.253475 | 5_3:-65570367 | None:intergenic |
| TGTTTCTGCACAGATGAAAA+TGG | 0.278620 | 5_3:-65567531 | None:intergenic |
| GGCACTGATCCACTCTTTAC+AGG | 0.283245 | 5_3:-65569517 | None:intergenic |
| CATCAGCTGGAAGCTGGTTT+TGG | 0.287912 | 5_3:-65569318 | None:intergenic |
| TGGTTCAATTCCATTGCATT+TGG | 0.288651 | 5_3:+65570858 | Msa0825640:three_prime_UTR |
| ATCTTTGTCTCTTGTTTCTT+CGG | 0.301294 | 5_3:+65568763 | Msa0825640:CDS |
| TTAGATTGACTGTCTGCTTT+GGG | 0.315236 | 5_3:-65570723 | None:intergenic |
| GGTTCAATTCCATTGCATTT+GGG | 0.319689 | 5_3:+65570859 | Msa0825640:three_prime_UTR |
| ATCCTTGTTGCCATAAATAC+TGG | 0.341420 | 5_3:+65569205 | Msa0825640:CDS |
| CTTCTGTTTCAAATAGTTGC+TGG | 0.354580 | 5_3:-65570559 | None:intergenic |
| ATCGATGAGAGGAGAGAGAA+AGG | 0.355577 | 5_3:-65567507 | None:intergenic |
| TCCCTCCACGACAGCAATCC+CGG | 0.370544 | 5_3:+65568723 | Msa0825640:CDS |
| ATCGTGGGATGAACCTCTTT+TGG | 0.374814 | 5_3:+65569698 | Msa0825640:CDS |
| ATTAGATTGACTGTCTGCTT+TGG | 0.379288 | 5_3:-65570724 | None:intergenic |
| TGGCCTCATTAGCCTTCAAT+TGG | 0.386901 | 5_3:-65570470 | None:intergenic |
| GAGCCTCTCAGCCTCTCGTT+TGG | 0.409388 | 5_3:-65570490 | None:intergenic |
| TGTTCTATGCAGTGTTTGTA+TGG | 0.409646 | 5_3:+65570951 | Msa0825640:three_prime_UTR |
| TAGAAATTACAACCAACAAT+TGG | 0.419727 | 5_3:-65570788 | None:intergenic |
| TGCGGACAGAATCAGTCTTC+AGG | 0.422728 | 5_3:+65568967 | Msa0825640:CDS |
| GACATTGATTCGAGCTCATC+GGG | 0.423325 | 5_3:+65569171 | Msa0825640:CDS |
| GTATGAGAAAATCAAATTGC+AGG | 0.425425 | 5_3:+65570614 | Msa0825640:CDS |
| TTTGTTAGTAGGATCTTTCA+TGG | 0.429043 | 5_3:+65569664 | Msa0825640:CDS |
| AATAGCATCAGCAGTAGGCC+AGG | 0.431940 | 5_3:-65568870 | None:intergenic |
| GATGTGATTTGTGTTCTCAT+TGG | 0.433032 | 5_3:+65569446 | Msa0825640:CDS |
| CACCTGAAAACCATTTCACT+TGG | 0.434640 | 5_3:-65569538 | None:intergenic |
| GGCTGATATGTTCCAATTGA+AGG | 0.436823 | 5_3:+65570458 | Msa0825640:CDS |
| ATAAGTTGAAATTCGAAACT+AGG | 0.440679 | 5_3:+65570926 | Msa0825640:three_prime_UTR |
| CACTTTCAGTAGGTGATTCA+CGG | 0.453441 | 5_3:-65568832 | None:intergenic |
| AGCTTCACCGATTGGATTGG+AGG | 0.456233 | 5_3:-65567564 | None:intergenic |
| TGGATCAGTGCCAAGTGAAA+TGG | 0.456270 | 5_3:+65569528 | Msa0825640:CDS |
| TCTTGCGAAGTCTGATAAAT+CGG | 0.461104 | 5_3:+65570524 | Msa0825640:CDS |
| CCCGGGATTGCTGTCGTGGA+GGG | 0.462782 | 5_3:-65568724 | None:intergenic |
| AGAAGCTTCACCGATTGGAT+TGG | 0.463018 | 5_3:-65567567 | None:intergenic |
| GCCATAAATACTGGAATTCA+GGG | 0.463071 | 5_3:+65569214 | Msa0825640:CDS |
| CCAGGCTCTTTGGAGAGTCT+AGG | 0.472168 | 5_3:-65570173 | None:intergenic |
| GATCGTCACACTTCCAAAAG+AGG | 0.472222 | 5_3:-65569711 | None:intergenic |
| ATACTCATCACGGGTTTGTC+CGG | 0.472397 | 5_3:-65570761 | None:intergenic |
| TGGAAGGTTGATTGCTCCAC+AGG | 0.475183 | 5_3:+65570209 | Msa0825640:CDS |
| TCGATGAGAGGAGAGAGAAA+GGG | 0.475434 | 5_3:-65567506 | None:intergenic |
| TGGAAGCTAAAGCAGCATGC+AGG | 0.476217 | 5_3:+65569761 | Msa0825640:CDS |
| ACTCTTTGTCAATTGTATAA+CGG | 0.476695 | 5_3:-65570835 | None:intergenic |
| CGATGAGAGGAGAGAGAAAG+GGG | 0.477005 | 5_3:-65567505 | None:intergenic |
| GTTCAATTCCATTGCATTTG+GGG | 0.478354 | 5_3:+65570860 | Msa0825640:three_prime_UTR |
| GCACTATAAGCCTTTGTGAA+TGG | 0.479255 | 5_3:+65570882 | Msa0825640:three_prime_UTR |
| TCCAACATTGTGCACCATCA+TGG | 0.480513 | 5_3:+65569611 | Msa0825640:CDS |
| GGCCATTGTAAAGGAGATCA+TGG | 0.483195 | 5_3:-65570698 | None:intergenic |
| ATGAGTATTGGTCCAATTGT+TGG | 0.486119 | 5_3:+65570776 | Msa0825640:exon |
| CCAACCCGGGATTGCTGTCG+TGG | 0.486754 | 5_3:-65568728 | None:intergenic |
| CAGAATTGCTGAAGTGGTGC+AGG | 0.488827 | 5_3:+65570242 | Msa0825640:CDS |
| CGACGAATAACTGACTGATC+AGG | 0.490361 | 5_3:-65568935 | None:intergenic |
| CTTTGGGAGGGCCATTGTAA+AGG | 0.496266 | 5_3:-65570707 | None:intergenic |
| GATTGACTGTCTGCTTTGGG+AGG | 0.497767 | 5_3:-65570720 | None:intergenic |
| ATTGCAGAAGCCACTGTTGT+TGG | 0.498959 | 5_3:-65569362 | None:intergenic |
| GGACTTCGAGTTATCCTTGA+GGG | 0.499090 | 5_3:+65569070 | Msa0825640:CDS |
| GCTTGTCTCCTGAGGATCCT+AGG | 0.499181 | 5_3:+65568792 | Msa0825640:CDS |
| AACAATCATCAGCTGGAAGC+TGG | 0.500810 | 5_3:-65569324 | None:intergenic |
| GCAGGAGGCTATACGAAAGA+TGG | 0.504278 | 5_3:+65570260 | Msa0825640:CDS |
| ACTTCGCAAGAGCAATCCTC+TGG | 0.508330 | 5_3:-65570512 | None:intergenic |
| TGCTATTGCTGCGAAGAAGA+TGG | 0.511035 | 5_3:+65568886 | Msa0825640:CDS |
| GCAAATAAGTTGCTCCCGTA+TGG | 0.512263 | 5_3:-65569485 | None:intergenic |
| TCAGTCTTCAGGACATTGCT+CGG | 0.513007 | 5_3:+65568978 | Msa0825640:CDS |
| GGACTTCAGAACTGTTAGGC+TGG | 0.513412 | 5_3:+65569575 | Msa0825640:CDS |
| CTCACACAGATTGTGCCATA+CGG | 0.513413 | 5_3:+65569470 | Msa0825640:CDS |
| CCTAGACTCTCCAAAGAGCC+TGG | 0.513548 | 5_3:+65570173 | Msa0825640:CDS |
| CCCTCCACGACAGCAATCCC+GGG | 0.515207 | 5_3:+65568724 | Msa0825640:CDS |
| GTAAATACATGCCGTTGGAT+TGG | 0.515809 | 5_3:+65569424 | Msa0825640:CDS |
| GAAGGCTCGCTTAGCTGTTG+AGG | 0.516614 | 5_3:+65570317 | Msa0825640:CDS |
| ATCACGGGTTTGTCCGGAAA+GGG | 0.518375 | 5_3:-65570755 | None:intergenic |
| GACAAACCCGTGATGAGTAT+TGG | 0.519442 | 5_3:+65570764 | Msa0825640:exon |
| GAGTTTGACCTAGGATCCTC+AGG | 0.521068 | 5_3:-65568800 | None:intergenic |
| GTTCCAATTGAAGGCTAATG+AGG | 0.521411 | 5_3:+65570467 | Msa0825640:CDS |
| TTGAAGTAAATACATGCCGT+TGG | 0.522716 | 5_3:+65569419 | Msa0825640:CDS |
| CCCATGATGGTGCACAATGT+TGG | 0.522804 | 5_3:-65569612 | None:intergenic |
| TAAGCCTTTGTGAATGGAAG+AGG | 0.525926 | 5_3:+65570888 | Msa0825640:three_prime_UTR |
| GACTTCAGAACTGTTAGGCT+GGG | 0.527791 | 5_3:+65569576 | Msa0825640:CDS |
| GGCTGCGACAGACTAATGTT+AGG | 0.528186 | 5_3:-65569247 | None:intergenic |
| ATTGACTGTCTGCTTTGGGA+GGG | 0.528716 | 5_3:-65570719 | None:intergenic |
| AGAAGCAGAAGAACTCAAGA+TGG | 0.529192 | 5_3:+65570371 | Msa0825640:CDS |
| CAGTGTTTGTATGGATATGC+TGG | 0.529285 | 5_3:+65570960 | Msa0825640:three_prime_UTR |
| ACGGGAGCAACTTATTTGCA+TGG | 0.531202 | 5_3:+65569489 | Msa0825640:CDS |
| AGACATTGATTCGAGCTCAT+CGG | 0.534133 | 5_3:+65569170 | Msa0825640:CDS |
| ATGAGCTCGAATCAATGTCT+TGG | 0.537389 | 5_3:-65569167 | None:intergenic |
| AGCCTGGAAAATGTAGAAAG+TGG | 0.542593 | 5_3:+65570189 | Msa0825640:CDS |
| GTTATCCTTGAGGGAGGGAA+TGG | 0.544054 | 5_3:+65569079 | Msa0825640:CDS |
| TTGGAAGTGTGACGATCTCA+AGG | 0.544756 | 5_3:+65569717 | Msa0825640:CDS |
| CCAACATTGTGCACCATCAT+GGG | 0.546323 | 5_3:+65569612 | Msa0825640:CDS |
| CGACAGCAATCCCGGGTTGG+AGG | 0.547481 | 5_3:+65568731 | Msa0825640:CDS |
| TGTTTGCAGTCCTCCAACCC+GGG | 0.548493 | 5_3:-65568741 | None:intergenic |
| CAGTCTTCAGGACATTGCTC+GGG | 0.548827 | 5_3:+65568979 | Msa0825640:CDS |
| ATTCTGTTGCATGCCTCCTG+TGG | 0.548889 | 5_3:-65570225 | None:intergenic |
| ACCCGGGATTGCTGTCGTGG+AGG | 0.553588 | 5_3:-65568725 | None:intergenic |
| AAAATCAAGCTCCCTCATCA+AGG | 0.557639 | 5_3:-65569644 | None:intergenic |
| TATTCTACGCAGTGTATGCA+TGG | 0.558369 | 5_3:+65571027 | Msa0825640:three_prime_UTR |
| TCACAAGAACAATCATCAGC+TGG | 0.558649 | 5_3:-65569331 | None:intergenic |
| CGGGAGCAACTTATTTGCAT+GGG | 0.558837 | 5_3:+65569490 | Msa0825640:CDS |
| ACAGAAGTTAAGTGAGGCTG+AGG | 0.558933 | 5_3:+65570575 | Msa0825640:CDS |
| GGAAGCTAAAGCAGCATGCA+GGG | 0.560687 | 5_3:+65569762 | Msa0825640:CDS |
| AGATTCTCCTCCAATCCAAT+CGG | 0.561940 | 5_3:+65567557 | Msa0825640:five_prime_UTR |
| GCTGCGAAGAAGATGGAGAA+TGG | 0.561971 | 5_3:+65568893 | Msa0825640:CDS |
| TCACACAGATTGTGCCATAC+GGG | 0.562732 | 5_3:+65569471 | Msa0825640:CDS |
| TCAGGTGTCAATCATGCAGT+AGG | 0.562912 | 5_3:+65569554 | Msa0825640:CDS |
| ATGTTTGCAGTCCTCCAACC+CGG | 0.569198 | 5_3:-65568742 | None:intergenic |
| GAATACATCAGCATTGAAGA+GGG | 0.569622 | 5_3:-65570669 | None:intergenic |
| ATTGTGCACCATCATGGGAT+GGG | 0.570954 | 5_3:+65569617 | Msa0825640:CDS |
| CTAGAACTAGCACTTTCAGT+AGG | 0.578007 | 5_3:-65568842 | None:intergenic |
| CATTGTGCACCATCATGGGA+TGG | 0.578553 | 5_3:+65569616 | Msa0825640:CDS |
| AGTAGGACTTCAGAACTGTT+AGG | 0.579004 | 5_3:+65569571 | Msa0825640:CDS |
| TTATACAATTGACAAAGAGT+TGG | 0.579432 | 5_3:+65570838 | Msa0825640:three_prime_UTR |
| GGACATTGCTCGGGAAAGAG+TGG | 0.584255 | 5_3:+65568988 | Msa0825640:CDS |
| GGAATACATCAGCATTGAAG+AGG | 0.585828 | 5_3:-65570670 | None:intergenic |
| CAATTGGAACATATCAGCCT+CGG | 0.587516 | 5_3:-65570454 | None:intergenic |
| GCATGCCATTCCCTCCCTCA+AGG | 0.588171 | 5_3:-65569084 | None:intergenic |
| CAGAAGAACTCAAGATGGAG+AGG | 0.588684 | 5_3:+65570376 | Msa0825640:CDS |
| CATCACGGGTTTGTCCGGAA+AGG | 0.588989 | 5_3:-65570756 | None:intergenic |
| TTGTGCACCATCATGGGATG+GGG | 0.590598 | 5_3:+65569618 | Msa0825640:CDS |
| AATTGGACCAATACTCATCA+CGG | 0.591741 | 5_3:-65570771 | None:intergenic |
| AAGGAATCCCCATCCCATGA+TGG | 0.593870 | 5_3:-65569625 | None:intergenic |
| GAAGATGAGAATGTTCAAGA+AGG | 0.594556 | 5_3:+65570299 | Msa0825640:CDS |
| ATGGTAGTAAAGACCATCGT+GGG | 0.598320 | 5_3:+65569683 | Msa0825640:CDS |
| GAGAGGCTGAGAGGCTCCAG+AGG | 0.598779 | 5_3:+65570496 | Msa0825640:CDS |
| ATTGGACCAATACTCATCAC+GGG | 0.601698 | 5_3:-65570770 | None:intergenic |
| CCACGACAGCAATCCCGGGT+TGG | 0.602524 | 5_3:+65568728 | Msa0825640:CDS |
| GGATCCTCGCTTGTCTCCTG+AGG | 0.602741 | 5_3:+65568784 | Msa0825640:CDS |
| TTCCAGTATTTATGGCAACA+AGG | 0.603589 | 5_3:-65569207 | None:intergenic |
| AGAAATATCTCAATCAGCGA+TGG | 0.603706 | 5_3:-65569268 | None:intergenic |
| TGGAAAATGTAGAAAGTGGA+AGG | 0.603944 | 5_3:+65570193 | Msa0825640:CDS |
| ATGCAACAGAATTGCTGAAG+TGG | 0.604458 | 5_3:+65570236 | Msa0825640:CDS |
| ATGAAAATGGAATCGATGAG+AGG | 0.607497 | 5_3:-65567518 | None:intergenic |
| ATCCATGATCTCCTTTACAA+TGG | 0.611502 | 5_3:+65570696 | Msa0825640:CDS |
| CTTCGAGTTATCCTTGAGGG+AGG | 0.614388 | 5_3:+65569073 | Msa0825640:CDS |
| TTCGAGTTATCCTTGAGGGA+GGG | 0.615596 | 5_3:+65569074 | Msa0825640:CDS |
| GGCTAATGAGGCCAAACGAG+AGG | 0.618483 | 5_3:+65570479 | Msa0825640:CDS |
| AATTGCTGAAGTGGTGCAGG+AGG | 0.618880 | 5_3:+65570245 | Msa0825640:CDS |
| AGGTTATCAGAGTTTGACCT+AGG | 0.619181 | 5_3:-65568809 | None:intergenic |
| TATTCGTCGTGTTTCTAGTG+CGG | 0.628975 | 5_3:+65568949 | Msa0825640:CDS |
| ACGGGTTTGTCCGGAAAGGG+TGG | 0.629535 | 5_3:-65570752 | None:intergenic |
| GTGCTAGTTCTAGAGAAACC+TGG | 0.630706 | 5_3:+65568852 | Msa0825640:CDS |
| TTTGAAACAGAAGTTAAGTG+AGG | 0.634933 | 5_3:+65570569 | Msa0825640:CDS |
| GCAGCAATAGCATCAGCAGT+AGG | 0.640719 | 5_3:-65568875 | None:intergenic |
| TTATAGTGCCCCAAATGCAA+TGG | 0.642750 | 5_3:-65570868 | None:intergenic |
| TGATCGTGAACTAGCAGACA+AGG | 0.644648 | 5_3:+65570344 | Msa0825640:CDS |
| ACAAATCACATCCAATCCAA+CGG | 0.645811 | 5_3:-65569435 | None:intergenic |
| GGATGGGGATTCCTTGATGA+GGG | 0.648889 | 5_3:+65569633 | Msa0825640:CDS |
| GGGATGGGGATTCCTTGATG+AGG | 0.651572 | 5_3:+65569632 | Msa0825640:CDS |
| AGGCCAAACGAGAGGCTGAG+AGG | 0.658904 | 5_3:+65570487 | Msa0825640:CDS |
| AAGGTTGATTGCTCCACAGG+AGG | 0.659574 | 5_3:+65570212 | Msa0825640:CDS |
| AGTACCTCTTCCATTCACAA+AGG | 0.664298 | 5_3:-65570892 | None:intergenic |
| ATGGGTCCTCCTGTAAAGAG+TGG | 0.666155 | 5_3:+65569508 | Msa0825640:CDS |
| TCTCGCTTATCGCAGAGCAG+TGG | 0.671798 | 5_3:+65570642 | Msa0825640:CDS |
| ACTGATCCACTCTTTACAGG+AGG | 0.681348 | 5_3:-65569514 | None:intergenic |
| CATGGTAGTAAAGACCATCG+TGG | 0.686464 | 5_3:+65569682 | Msa0825640:CDS |
| AAGAACTAGAGAGAATTGTG+AGG | 0.696370 | 5_3:+65570421 | Msa0825640:CDS |
| GAAACATGCACCAACAACAG+TGG | 0.702295 | 5_3:+65569352 | Msa0825640:CDS |
| TGGACTTCGAGTTATCCTTG+AGG | 0.704359 | 5_3:+65569069 | Msa0825640:CDS |
| GGATCCTCAGGAGACAAGCG+AGG | 0.706361 | 5_3:-65568788 | None:intergenic |
| AAAAGAGGTTCATCCCACGA+TGG | 0.725729 | 5_3:-65569696 | None:intergenic |
| AATACATCAGCATTGAAGAG+GGG | 0.734552 | 5_3:-65570668 | None:intergenic |
| TTTCAGTAGGTGATTCACGG+AGG | 0.740333 | 5_3:-65568829 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTAAAAAAACTAAATT+AGG | + | chr5_3:65569935-65569954 | Msa0825640:intron | 10.0% |
| !! | TTAATTTAAACTTGAAAATT+AGG | + | chr5_3:65571002-65571021 | Msa0825640:three_prime_UTR | 10.0% |
| !! | AAAATTGAAGATGAAAAAAT+AGG | - | chr5_3:65567606-65567625 | None:intergenic | 15.0% |
| !!! | TTTTCAAGTTTTGAAATTTA+TGG | + | chr5_3:65567721-65567740 | Msa0825640:intron | 15.0% |
| !! | ATTAATTATAAGCACTTAAT+AGG | - | chr5_3:65570987-65571006 | None:intergenic | 15.0% |
| !!! | TTGTTTTTGTTTAAGCTATA+AGG | + | chr5_3:65568443-65568462 | Msa0825640:intron | 20.0% |
| !! | TTAATCATCAAGGAAATTAT+AGG | - | chr5_3:65568615-65568634 | None:intergenic | 20.0% |
| !!! | TGACTGTATAAATATTTTCA+TGG | + | chr5_3:65568648-65568667 | Msa0825640:intron | 20.0% |
| !! | AAAACTGAAAAGTAGAAAAA+TGG | + | chr5_3:65569741-65569760 | Msa0825640:CDS | 20.0% |
| !!! | ATTCGTATGTGTTTAAAATT+GGG | - | chr5_3:65570015-65570034 | None:intergenic | 20.0% |
| !!! | TATTCGTATGTGTTTAAAAT+TGG | - | chr5_3:65570016-65570035 | None:intergenic | 20.0% |
| !! | GAATGAGGATAAATAAATAA+AGG | - | chr5_3:65570121-65570140 | None:intergenic | 20.0% |
| !! | AATTTATGGTCAATTTTGTG+TGG | + | chr5_3:65567735-65567754 | Msa0825640:intron | 25.0% |
| !!! | ATTTTGTTGTGAATTATGTG+TGG | + | chr5_3:65567879-65567898 | Msa0825640:intron | 25.0% |
| ! | AATCTAAGAAGCTACAAAAT+AGG | - | chr5_3:65567986-65568005 | None:intergenic | 25.0% |
| !! | GTGTTATAAGCTTTTATTGT+AGG | + | chr5_3:65568214-65568233 | Msa0825640:intron | 25.0% |
| ! | ATGCTATACACTACAAATTA+AGG | - | chr5_3:65568379-65568398 | None:intergenic | 25.0% |
| !!! | AATTGTTTTATATTAGAGCC+TGG | - | chr5_3:65568685-65568704 | None:intergenic | 25.0% |
| ! | GCTCTAATATAAAACAATTG+TGG | + | chr5_3:65568686-65568705 | Msa0825640:intron | 25.0% |
| ! | TAGAAATTACAACCAACAAT+TGG | - | chr5_3:65570791-65570810 | None:intergenic | 25.0% |
| ! | ACTCTTTGTCAATTGTATAA+CGG | - | chr5_3:65570838-65570857 | None:intergenic | 25.0% |
| ! | TTATACAATTGACAAAGAGT+TGG | + | chr5_3:65570838-65570857 | Msa0825640:three_prime_UTR | 25.0% |
| !! | ATAAGTTGAAATTCGAAACT+AGG | + | chr5_3:65570926-65570945 | Msa0825640:three_prime_UTR | 25.0% |
| CAAAACTAGATCGAAATTCA+CGG | - | chr5_3:65567657-65567676 | None:intergenic | 30.0% | |
| CATGAATTGTTGTAACTCTT+TGG | + | chr5_3:65567927-65567946 | Msa0825640:intron | 30.0% | |
| TCTAAGTTGTTTATCCAAAC+AGG | - | chr5_3:65568077-65568096 | None:intergenic | 30.0% | |
| ATAAACTGCTTATCCAAACA+GGG | - | chr5_3:65568100-65568119 | None:intergenic | 30.0% | |
| TATAAACTGCTTATCCAAAC+AGG | - | chr5_3:65568101-65568120 | None:intergenic | 30.0% | |
| CATGATAAGCGCTTATATAT+AGG | + | chr5_3:65568135-65568154 | Msa0825640:intron | 30.0% | |
| CTACAAATTAAGGATCTGTT+TGG | - | chr5_3:65568369-65568388 | None:intergenic | 30.0% | |
| ATAAGCACTTGAAGACTATT+AGG | - | chr5_3:65568555-65568574 | None:intergenic | 30.0% | |
| AATTATAGGACTGTTTGGAT+TGG | - | chr5_3:65568601-65568620 | None:intergenic | 30.0% | |
| AAGGAAATTATAGGACTGTT+TGG | - | chr5_3:65568606-65568625 | None:intergenic | 30.0% | |
| ACTAGAACAGTTAATCATCA+AGG | - | chr5_3:65568625-65568644 | None:intergenic | 30.0% | |
| ! | ATCTTTGTCTCTTGTTTCTT+CGG | + | chr5_3:65568763-65568782 | Msa0825640:CDS | 30.0% |
| TTTGTTAGTAGGATCTTTCA+TGG | + | chr5_3:65569664-65569683 | Msa0825640:CDS | 30.0% | |
| !! | GCAATATTGACTGTTTTTCA+AGG | + | chr5_3:65569784-65569803 | Msa0825640:CDS | 30.0% |
| ! | TATCTGCATTGACATAATTG+TGG | + | chr5_3:65569847-65569866 | Msa0825640:intron | 30.0% |
| CTCACTTTCTATATCACATT+TGG | + | chr5_3:65569891-65569910 | Msa0825640:intron | 30.0% | |
| TTTGGTTATGTCTGAACAAA+TGG | + | chr5_3:65569909-65569928 | Msa0825640:intron | 30.0% | |
| !! | GAAAAGCATTTGTTAGAATG+AGG | - | chr5_3:65570136-65570155 | None:intergenic | 30.0% |
| ! | TTTGAAACAGAAGTTAAGTG+AGG | + | chr5_3:65570569-65570588 | Msa0825640:CDS | 30.0% |
| GTATGAGAAAATCAAATTGC+AGG | + | chr5_3:65570614-65570633 | Msa0825640:CDS | 30.0% | |
| ATGAAAATGGAATCGATGAG+AGG | - | chr5_3:65567521-65567540 | None:intergenic | 35.0% | |
| ! | TGTTTCTGCACAGATGAAAA+TGG | - | chr5_3:65567534-65567553 | None:intergenic | 35.0% |
| ! | TTATGGTCAATTTTGTGTGG+TGG | + | chr5_3:65567738-65567757 | Msa0825640:intron | 35.0% |
| ! | TATGGTCAATTTTGTGTGGT+GGG | + | chr5_3:65567739-65567758 | Msa0825640:intron | 35.0% |
| AATTATGTGCTGTGGTATGT+AGG | + | chr5_3:65568050-65568069 | Msa0825640:intron | 35.0% | |
| TAAACAACTTAGACCCTGTT+TGG | + | chr5_3:65568084-65568103 | Msa0825640:intron | 35.0% | |
| GGTGTGTTCATAAACTATCT+TGG | + | chr5_3:65568464-65568483 | Msa0825640:intron | 35.0% | |
| ! | TGTTTTATATTAGAGCCTGG+TGG | - | chr5_3:65568682-65568701 | None:intergenic | 35.0% |
| CTAAAAATTCACCAGGTAGA+CGG | - | chr5_3:65569036-65569055 | None:intergenic | 35.0% | |
| !! | TCTACCTGGTGAATTTTTAG+AGG | + | chr5_3:65569036-65569055 | Msa0825640:CDS | 35.0% |
| !! | TTTTTAGAGGAGCTGAAAAC+TGG | + | chr5_3:65569049-65569068 | Msa0825640:CDS | 35.0% |
| ATCCTTGTTGCCATAAATAC+TGG | + | chr5_3:65569205-65569224 | Msa0825640:CDS | 35.0% | |
| TTCCAGTATTTATGGCAACA+AGG | - | chr5_3:65569210-65569229 | None:intergenic | 35.0% | |
| TGCCATAAATACTGGAATTC+AGG | + | chr5_3:65569213-65569232 | Msa0825640:CDS | 35.0% | |
| GCCATAAATACTGGAATTCA+GGG | + | chr5_3:65569214-65569233 | Msa0825640:CDS | 35.0% | |
| TCCCTGAATTCCAGTATTTA+TGG | - | chr5_3:65569218-65569237 | None:intergenic | 35.0% | |
| AGAAATATCTCAATCAGCGA+TGG | - | chr5_3:65569271-65569290 | None:intergenic | 35.0% | |
| TTGAAGTAAATACATGCCGT+TGG | + | chr5_3:65569419-65569438 | Msa0825640:CDS | 35.0% | |
| ACAAATCACATCCAATCCAA+CGG | - | chr5_3:65569438-65569457 | None:intergenic | 35.0% | |
| ! | GATGTGATTTGTGTTCTCAT+TGG | + | chr5_3:65569446-65569465 | Msa0825640:CDS | 35.0% |
| ! | TTCCACTTTCTACATTTTCC+AGG | - | chr5_3:65570194-65570213 | None:intergenic | 35.0% |
| TGGAAAATGTAGAAAGTGGA+AGG | + | chr5_3:65570193-65570212 | Msa0825640:CDS | 35.0% | |
| GAAGATGAGAATGTTCAAGA+AGG | + | chr5_3:65570299-65570318 | Msa0825640:CDS | 35.0% | |
| AAGAACTAGAGAGAATTGTG+AGG | + | chr5_3:65570421-65570440 | Msa0825640:CDS | 35.0% | |
| TCTTGCGAAGTCTGATAAAT+CGG | + | chr5_3:65570524-65570543 | Msa0825640:CDS | 35.0% | |
| CTTCTGTTTCAAATAGTTGC+TGG | - | chr5_3:65570562-65570581 | None:intergenic | 35.0% | |
| ! | AATACATCAGCATTGAAGAG+GGG | - | chr5_3:65570671-65570690 | None:intergenic | 35.0% |
| ! | GAATACATCAGCATTGAAGA+GGG | - | chr5_3:65570672-65570691 | None:intergenic | 35.0% |
| ! | GTAAAGGAGATCATGGATTT+TGG | - | chr5_3:65570694-65570713 | None:intergenic | 35.0% |
| ATCCATGATCTCCTTTACAA+TGG | + | chr5_3:65570696-65570715 | Msa0825640:CDS | 35.0% | |
| TTAGATTGACTGTCTGCTTT+GGG | - | chr5_3:65570726-65570745 | None:intergenic | 35.0% | |
| ATTAGATTGACTGTCTGCTT+TGG | - | chr5_3:65570727-65570746 | None:intergenic | 35.0% | |
| AATTGGACCAATACTCATCA+CGG | - | chr5_3:65570774-65570793 | None:intergenic | 35.0% | |
| !! | ATGAGTATTGGTCCAATTGT+TGG | + | chr5_3:65570776-65570795 | Msa0825640:exon | 35.0% |
| TGGTTCAATTCCATTGCATT+TGG | + | chr5_3:65570858-65570877 | Msa0825640:three_prime_UTR | 35.0% | |
| GGTTCAATTCCATTGCATTT+GGG | + | chr5_3:65570859-65570878 | Msa0825640:three_prime_UTR | 35.0% | |
| GTTCAATTCCATTGCATTTG+GGG | + | chr5_3:65570860-65570879 | Msa0825640:three_prime_UTR | 35.0% | |
| TGTTCTATGCAGTGTTTGTA+TGG | + | chr5_3:65570951-65570970 | Msa0825640:three_prime_UTR | 35.0% | |
| AGATTCTCCTCCAATCCAAT+CGG | + | chr5_3:65567557-65567576 | Msa0825640:five_prime_UTR | 40.0% | |
| ! | TGATGACGATGATGATGATG+TGG | + | chr5_3:65567812-65567831 | Msa0825640:intron | 40.0% |
| GCTGAATCAATTATGTGCTG+TGG | + | chr5_3:65568042-65568061 | Msa0825640:intron | 40.0% | |
| !! | TGTTTGGATTGGCTCATTTG+AGG | - | chr5_3:65568590-65568609 | None:intergenic | 40.0% |
| AGGTTATCAGAGTTTGACCT+AGG | - | chr5_3:65568812-65568831 | None:intergenic | 40.0% | |
| CACTTTCAGTAGGTGATTCA+CGG | - | chr5_3:65568835-65568854 | None:intergenic | 40.0% | |
| CTAGAACTAGCACTTTCAGT+AGG | - | chr5_3:65568845-65568864 | None:intergenic | 40.0% | |
| !! | TATTCGTCGTGTTTCTAGTG+CGG | + | chr5_3:65568949-65568968 | Msa0825640:CDS | 40.0% |
| ! | AGCTCCTCTAAAAATTCACC+AGG | - | chr5_3:65569043-65569062 | None:intergenic | 40.0% |
| ATGAGCTCGAATCAATGTCT+TGG | - | chr5_3:65569170-65569189 | None:intergenic | 40.0% | |
| !! | AGACATTGATTCGAGCTCAT+CGG | + | chr5_3:65569170-65569189 | Msa0825640:CDS | 40.0% |
| !! | GGTTTTGGCAAGCTATGTTT+CGG | - | chr5_3:65569306-65569325 | None:intergenic | 40.0% |
| TCACAAGAACAATCATCAGC+TGG | - | chr5_3:65569334-65569353 | None:intergenic | 40.0% | |
| GTAAATACATGCCGTTGGAT+TGG | + | chr5_3:65569424-65569443 | Msa0825640:CDS | 40.0% | |
| ! | TGCCAAGTGAAATGGTTTTC+AGG | + | chr5_3:65569536-65569555 | Msa0825640:CDS | 40.0% |
| CACCTGAAAACCATTTCACT+TGG | - | chr5_3:65569541-65569560 | None:intergenic | 40.0% | |
| AGTAGGACTTCAGAACTGTT+AGG | + | chr5_3:65569571-65569590 | Msa0825640:CDS | 40.0% | |
| AAAATCAAGCTCCCTCATCA+AGG | - | chr5_3:65569647-65569666 | None:intergenic | 40.0% | |
| ! | GGGAGCTTGATTTTGTTAGT+AGG | + | chr5_3:65569653-65569672 | Msa0825640:CDS | 40.0% |
| ATGGTAGTAAAGACCATCGT+GGG | + | chr5_3:65569683-65569702 | Msa0825640:CDS | 40.0% | |
| ! | TCTACATTTTCCAGGCTCTT+TGG | - | chr5_3:65570186-65570205 | None:intergenic | 40.0% |
| AGCCTGGAAAATGTAGAAAG+TGG | + | chr5_3:65570189-65570208 | Msa0825640:CDS | 40.0% | |
| ATGCAACAGAATTGCTGAAG+TGG | + | chr5_3:65570236-65570255 | Msa0825640:CDS | 40.0% | |
| AGAAGCAGAAGAACTCAAGA+TGG | + | chr5_3:65570371-65570390 | Msa0825640:CDS | 40.0% | |
| CAATTGGAACATATCAGCCT+CGG | - | chr5_3:65570457-65570476 | None:intergenic | 40.0% | |
| GGCTGATATGTTCCAATTGA+AGG | + | chr5_3:65570458-65570477 | Msa0825640:CDS | 40.0% | |
| GTTCCAATTGAAGGCTAATG+AGG | + | chr5_3:65570467-65570486 | Msa0825640:CDS | 40.0% | |
| ! | GGAATACATCAGCATTGAAG+AGG | - | chr5_3:65570673-65570692 | None:intergenic | 40.0% |
| ATTGGACCAATACTCATCAC+GGG | - | chr5_3:65570773-65570792 | None:intergenic | 40.0% | |
| TTATAGTGCCCCAAATGCAA+TGG | - | chr5_3:65570871-65570890 | None:intergenic | 40.0% | |
| GCACTATAAGCCTTTGTGAA+TGG | + | chr5_3:65570882-65570901 | Msa0825640:three_prime_UTR | 40.0% | |
| TAAGCCTTTGTGAATGGAAG+AGG | + | chr5_3:65570888-65570907 | Msa0825640:three_prime_UTR | 40.0% | |
| AGTACCTCTTCCATTCACAA+AGG | - | chr5_3:65570895-65570914 | None:intergenic | 40.0% | |
| CAGTGTTTGTATGGATATGC+TGG | + | chr5_3:65570960-65570979 | Msa0825640:three_prime_UTR | 40.0% | |
| TATTCTACGCAGTGTATGCA+TGG | + | chr5_3:65571027-65571046 | Msa0825640:three_prime_UTR | 40.0% | |
| AGGAGAGAGAAAGGGGATTT+AGG | - | chr5_3:65567501-65567520 | None:intergenic | 45.0% | |
| TCGATGAGAGGAGAGAGAAA+GGG | - | chr5_3:65567509-65567528 | None:intergenic | 45.0% | |
| ATCGATGAGAGGAGAGAGAA+AGG | - | chr5_3:65567510-65567529 | None:intergenic | 45.0% | |
| ! | AGAAGCTTCACCGATTGGAT+TGG | - | chr5_3:65567570-65567589 | None:intergenic | 45.0% |
| TGAGAAGAAGCTTCACCGAT+TGG | - | chr5_3:65567575-65567594 | None:intergenic | 45.0% | |
| TGTGGTATGTAGGTCCTGTT+TGG | + | chr5_3:65568060-65568079 | Msa0825640:intron | 45.0% | |
| TTTCAGTAGGTGATTCACGG+AGG | - | chr5_3:65568832-65568851 | None:intergenic | 45.0% | |
| !! | GTGCTAGTTCTAGAGAAACC+TGG | + | chr5_3:65568852-65568871 | Msa0825640:CDS | 45.0% |
| TGCTATTGCTGCGAAGAAGA+TGG | + | chr5_3:65568886-65568905 | Msa0825640:CDS | 45.0% | |
| CGACGAATAACTGACTGATC+AGG | - | chr5_3:65568938-65568957 | None:intergenic | 45.0% | |
| TCAGTCTTCAGGACATTGCT+CGG | + | chr5_3:65568978-65568997 | Msa0825640:CDS | 45.0% | |
| GAAAAAATGCTCCGTCTACC+TGG | + | chr5_3:65569022-65569041 | Msa0825640:CDS | 45.0% | |
| ! | TGGACTTCGAGTTATCCTTG+AGG | + | chr5_3:65569069-65569088 | Msa0825640:CDS | 45.0% |
| ! | GGACTTCGAGTTATCCTTGA+GGG | + | chr5_3:65569070-65569089 | Msa0825640:CDS | 45.0% |
| ! | TTCGAGTTATCCTTGAGGGA+GGG | + | chr5_3:65569074-65569093 | Msa0825640:CDS | 45.0% |
| !! | GACATTGATTCGAGCTCATC+GGG | + | chr5_3:65569171-65569190 | Msa0825640:CDS | 45.0% |
| AACAATCATCAGCTGGAAGC+TGG | - | chr5_3:65569327-65569346 | None:intergenic | 45.0% | |
| GAAACATGCACCAACAACAG+TGG | + | chr5_3:65569352-65569371 | Msa0825640:CDS | 45.0% | |
| ATTGCAGAAGCCACTGTTGT+TGG | - | chr5_3:65569365-65569384 | None:intergenic | 45.0% | |
| CTCACACAGATTGTGCCATA+CGG | + | chr5_3:65569470-65569489 | Msa0825640:CDS | 45.0% | |
| TCACACAGATTGTGCCATAC+GGG | + | chr5_3:65569471-65569490 | Msa0825640:CDS | 45.0% | |
| GCAAATAAGTTGCTCCCGTA+TGG | - | chr5_3:65569488-65569507 | None:intergenic | 45.0% | |
| ACGGGAGCAACTTATTTGCA+TGG | + | chr5_3:65569489-65569508 | Msa0825640:CDS | 45.0% | |
| CGGGAGCAACTTATTTGCAT+GGG | + | chr5_3:65569490-65569509 | Msa0825640:CDS | 45.0% | |
| ACTGATCCACTCTTTACAGG+AGG | - | chr5_3:65569517-65569536 | None:intergenic | 45.0% | |
| TGGATCAGTGCCAAGTGAAA+TGG | + | chr5_3:65569528-65569547 | Msa0825640:CDS | 45.0% | |
| TCAGGTGTCAATCATGCAGT+AGG | + | chr5_3:65569554-65569573 | Msa0825640:CDS | 45.0% | |
| GACTTCAGAACTGTTAGGCT+GGG | + | chr5_3:65569576-65569595 | Msa0825640:CDS | 45.0% | |
| TCCAACATTGTGCACCATCA+TGG | + | chr5_3:65569611-65569630 | Msa0825640:CDS | 45.0% | |
| CCAACATTGTGCACCATCAT+GGG | + | chr5_3:65569612-65569631 | Msa0825640:CDS | 45.0% | |
| ATTGTGCACCATCATGGGAT+GGG | + | chr5_3:65569617-65569636 | Msa0825640:CDS | 45.0% | |
| CATGGTAGTAAAGACCATCG+TGG | + | chr5_3:65569682-65569701 | Msa0825640:CDS | 45.0% | |
| AAAAGAGGTTCATCCCACGA+TGG | - | chr5_3:65569699-65569718 | None:intergenic | 45.0% | |
| ! | ATCGTGGGATGAACCTCTTT+TGG | + | chr5_3:65569698-65569717 | Msa0825640:CDS | 45.0% |
| GATCGTCACACTTCCAAAAG+AGG | - | chr5_3:65569714-65569733 | None:intergenic | 45.0% | |
| ! | TTGGAAGTGTGACGATCTCA+AGG | + | chr5_3:65569717-65569736 | Msa0825640:CDS | 45.0% |
| AAAGGCAACAGCAGCATATC+TGG | - | chr5_3:65570103-65570122 | None:intergenic | 45.0% | |
| CTAGGTCAAGCTCTTCATGT+AGG | - | chr5_3:65570158-65570177 | None:intergenic | 45.0% | |
| TGATCGTGAACTAGCAGACA+AGG | + | chr5_3:65570344-65570363 | Msa0825640:CDS | 45.0% | |
| CTTGAGTTCTTCTGCTTCTC+TGG | - | chr5_3:65570370-65570389 | None:intergenic | 45.0% | |
| CAGAAGAACTCAAGATGGAG+AGG | + | chr5_3:65570376-65570395 | Msa0825640:CDS | 45.0% | |
| TGTGAGGCTTAAAAATGCCG+AGG | + | chr5_3:65570437-65570456 | Msa0825640:CDS | 45.0% | |
| !! | TGGCCTCATTAGCCTTCAAT+TGG | - | chr5_3:65570473-65570492 | None:intergenic | 45.0% |
| ACAGAAGTTAAGTGAGGCTG+AGG | + | chr5_3:65570575-65570594 | Msa0825640:CDS | 45.0% | |
| GGCCATTGTAAAGGAGATCA+TGG | - | chr5_3:65570701-65570720 | None:intergenic | 45.0% | |
| !! | ATTGACTGTCTGCTTTGGGA+GGG | - | chr5_3:65570722-65570741 | None:intergenic | 45.0% |
| ATACTCATCACGGGTTTGTC+CGG | - | chr5_3:65570764-65570783 | None:intergenic | 45.0% | |
| GACAAACCCGTGATGAGTAT+TGG | + | chr5_3:65570764-65570783 | Msa0825640:exon | 45.0% | |
| CGATGAGAGGAGAGAGAAAG+GGG | - | chr5_3:65567508-65567527 | None:intergenic | 50.0% | |
| ! | AGCTTCACCGATTGGATTGG+AGG | - | chr5_3:65567567-65567586 | None:intergenic | 50.0% |
| TTCATGGACATGTCACCACC+AGG | + | chr5_3:65568664-65568683 | Msa0825640:intron | 50.0% | |
| ATGTTTGCAGTCCTCCAACC+CGG | - | chr5_3:65568745-65568764 | None:intergenic | 50.0% | |
| GAGTTTGACCTAGGATCCTC+AGG | - | chr5_3:65568803-65568822 | None:intergenic | 50.0% | |
| AATAGCATCAGCAGTAGGCC+AGG | - | chr5_3:65568873-65568892 | None:intergenic | 50.0% | |
| GCAGCAATAGCATCAGCAGT+AGG | - | chr5_3:65568878-65568897 | None:intergenic | 50.0% | |
| GCTGCGAAGAAGATGGAGAA+TGG | + | chr5_3:65568893-65568912 | Msa0825640:CDS | 50.0% | |
| TGCGGACAGAATCAGTCTTC+AGG | + | chr5_3:65568967-65568986 | Msa0825640:CDS | 50.0% | |
| CAGTCTTCAGGACATTGCTC+GGG | + | chr5_3:65568979-65568998 | Msa0825640:CDS | 50.0% | |
| ! | CTTCGAGTTATCCTTGAGGG+AGG | + | chr5_3:65569073-65569092 | Msa0825640:CDS | 50.0% |
| GTTATCCTTGAGGGAGGGAA+TGG | + | chr5_3:65569079-65569098 | Msa0825640:CDS | 50.0% | |
| GGCTGCGACAGACTAATGTT+AGG | - | chr5_3:65569250-65569269 | None:intergenic | 50.0% | |
| !! | CATCAGCTGGAAGCTGGTTT+TGG | - | chr5_3:65569321-65569340 | None:intergenic | 50.0% |
| ATGGGTCCTCCTGTAAAGAG+TGG | + | chr5_3:65569508-65569527 | Msa0825640:CDS | 50.0% | |
| !! | GGCACTGATCCACTCTTTAC+AGG | - | chr5_3:65569520-65569539 | None:intergenic | 50.0% |
| GGACTTCAGAACTGTTAGGC+TGG | + | chr5_3:65569575-65569594 | Msa0825640:CDS | 50.0% | |
| ! | CCCATGATGGTGCACAATGT+TGG | - | chr5_3:65569615-65569634 | None:intergenic | 50.0% |
| CATTGTGCACCATCATGGGA+TGG | + | chr5_3:65569616-65569635 | Msa0825640:CDS | 50.0% | |
| TTGTGCACCATCATGGGATG+GGG | + | chr5_3:65569618-65569637 | Msa0825640:CDS | 50.0% | |
| AAGGAATCCCCATCCCATGA+TGG | - | chr5_3:65569628-65569647 | None:intergenic | 50.0% | |
| GGATGGGGATTCCTTGATGA+GGG | + | chr5_3:65569633-65569652 | Msa0825640:CDS | 50.0% | |
| TGGAAGCTAAAGCAGCATGC+AGG | + | chr5_3:65569761-65569780 | Msa0825640:CDS | 50.0% | |
| GGAAGCTAAAGCAGCATGCA+GGG | + | chr5_3:65569762-65569781 | Msa0825640:CDS | 50.0% | |
| ! | TGGAAGGTTGATTGCTCCAC+AGG | + | chr5_3:65570209-65570228 | Msa0825640:CDS | 50.0% |
| ! | AAGGTTGATTGCTCCACAGG+AGG | + | chr5_3:65570212-65570231 | Msa0825640:CDS | 50.0% |
| ATTCTGTTGCATGCCTCCTG+TGG | - | chr5_3:65570228-65570247 | None:intergenic | 50.0% | |
| CAGAATTGCTGAAGTGGTGC+AGG | + | chr5_3:65570242-65570261 | Msa0825640:CDS | 50.0% | |
| AATTGCTGAAGTGGTGCAGG+AGG | + | chr5_3:65570245-65570264 | Msa0825640:CDS | 50.0% | |
| GCAGGAGGCTATACGAAAGA+TGG | + | chr5_3:65570260-65570279 | Msa0825640:CDS | 50.0% | |
| ACTTCGCAAGAGCAATCCTC+TGG | - | chr5_3:65570515-65570534 | None:intergenic | 50.0% | |
| ! | CTTTGGGAGGGCCATTGTAA+AGG | - | chr5_3:65570710-65570729 | None:intergenic | 50.0% |
| ! | GATTGACTGTCTGCTTTGGG+AGG | - | chr5_3:65570723-65570742 | None:intergenic | 50.0% |
| CTAATGACTGCCACCCTTTC+CGG | + | chr5_3:65570742-65570761 | Msa0825640:CDS | 50.0% | |
| ATCACGGGTTTGTCCGGAAA+GGG | - | chr5_3:65570758-65570777 | None:intergenic | 50.0% | |
| TGTTTGCAGTCCTCCAACCC+GGG | - | chr5_3:65568744-65568763 | None:intergenic | 55.0% | |
| GCTTGTCTCCTGAGGATCCT+AGG | + | chr5_3:65568792-65568811 | Msa0825640:CDS | 55.0% | |
| GGACATTGCTCGGGAAAGAG+TGG | + | chr5_3:65568988-65569007 | Msa0825640:CDS | 55.0% | |
| GGGATGGGGATTCCTTGATG+AGG | + | chr5_3:65569632-65569651 | Msa0825640:CDS | 55.0% | |
| ! | CCAGGCTCTTTGGAGAGTCT+AGG | - | chr5_3:65570176-65570195 | None:intergenic | 55.0% |
| CCTAGACTCTCCAAAGAGCC+TGG | + | chr5_3:65570173-65570192 | Msa0825640:CDS | 55.0% | |
| GAAGGCTCGCTTAGCTGTTG+AGG | + | chr5_3:65570317-65570336 | Msa0825640:CDS | 55.0% | |
| GGCTAATGAGGCCAAACGAG+AGG | + | chr5_3:65570479-65570498 | Msa0825640:CDS | 55.0% | |
| TCTCGCTTATCGCAGAGCAG+TGG | + | chr5_3:65570642-65570661 | Msa0825640:CDS | 55.0% | |
| CATCACGGGTTTGTCCGGAA+AGG | - | chr5_3:65570759-65570778 | None:intergenic | 55.0% | |
| TCCCTCCACGACAGCAATCC+CGG | + | chr5_3:65568723-65568742 | Msa0825640:CDS | 60.0% | |
| GGATCCTCGCTTGTCTCCTG+AGG | + | chr5_3:65568784-65568803 | Msa0825640:CDS | 60.0% | |
| GGATCCTCAGGAGACAAGCG+AGG | - | chr5_3:65568791-65568810 | None:intergenic | 60.0% | |
| GCATGCCATTCCCTCCCTCA+AGG | - | chr5_3:65569087-65569106 | None:intergenic | 60.0% | |
| AGGCCAAACGAGAGGCTGAG+AGG | + | chr5_3:65570487-65570506 | Msa0825640:CDS | 60.0% | |
| GAGCCTCTCAGCCTCTCGTT+TGG | - | chr5_3:65570493-65570512 | None:intergenic | 60.0% | |
| ACGGGTTTGTCCGGAAAGGG+TGG | - | chr5_3:65570755-65570774 | None:intergenic | 60.0% | |
| CCCGGGATTGCTGTCGTGGA+GGG | - | chr5_3:65568727-65568746 | None:intergenic | 65.0% | |
| CCCTCCACGACAGCAATCCC+GGG | + | chr5_3:65568724-65568743 | Msa0825640:CDS | 65.0% | |
| ACCCGGGATTGCTGTCGTGG+AGG | - | chr5_3:65568728-65568747 | None:intergenic | 65.0% | |
| CCAACCCGGGATTGCTGTCG+TGG | - | chr5_3:65568731-65568750 | None:intergenic | 65.0% | |
| CCACGACAGCAATCCCGGGT+TGG | + | chr5_3:65568728-65568747 | Msa0825640:CDS | 65.0% | |
| ! | CGACAGCAATCCCGGGTTGG+AGG | + | chr5_3:65568731-65568750 | Msa0825640:CDS | 65.0% |
| GAGAGGCTGAGAGGCTCCAG+AGG | + | chr5_3:65570496-65570515 | Msa0825640:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 65567486 | 65571112 | 65567486 | ID=Msa0825640;Name=Msa0825640 |
| chr5_3 | mRNA | 65567486 | 65571112 | 65567486 | ID=Msa0825640-mRNA-1;Parent=Msa0825640;Name=Msa0825640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=97|1|1|1|0.5|0.33|3|336|565 |
| chr5_3 | exon | 65567486 | 65567578 | 65567486 | ID=Msa0825640-mRNA-1:exon:20543;Parent=Msa0825640-mRNA-1 |
| chr5_3 | exon | 65568715 | 65569805 | 65568715 | ID=Msa0825640-mRNA-1:exon:20544;Parent=Msa0825640-mRNA-1 |
| chr5_3 | exon | 65570166 | 65571112 | 65570166 | ID=Msa0825640-mRNA-1:exon:20545;Parent=Msa0825640-mRNA-1 |
| chr5_3 | five_prime_UTR | 65567486 | 65567578 | 65567486 | ID=Msa0825640-mRNA-1:five_prime_utr;Parent=Msa0825640-mRNA-1 |
| chr5_3 | five_prime_UTR | 65568715 | 65568718 | 65568715 | ID=Msa0825640-mRNA-1:five_prime_utr;Parent=Msa0825640-mRNA-1 |
| chr5_3 | CDS | 65568719 | 65569805 | 65568719 | ID=Msa0825640-mRNA-1:cds;Parent=Msa0825640-mRNA-1 |
| chr5_3 | CDS | 65570166 | 65570776 | 65570166 | ID=Msa0825640-mRNA-1:cds;Parent=Msa0825640-mRNA-1 |
| chr5_3 | three_prime_UTR | 65570777 | 65571112 | 65570777 | ID=Msa0825640-mRNA-1:three_prime_utr;Parent=Msa0825640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
