Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825610 | XP_003617956.1 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825610 | sp|Q84N37|PVIP_PEA | 92.593 | 513 | 38 | 0 | 53 | 565 | 1 | 513 | 0.0 | 981 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825610 | G7KEP0 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737430 | Msa0825610 | 0.838899 | 2.185668e-57 | -8.615850e-47 |
| Msa0746170 | Msa0825610 | 0.811321 | 7.423529e-51 | -8.615850e-47 |
| Msa0746210 | Msa0825610 | 0.805238 | 1.470403e-49 | -8.615850e-47 |
| Msa0825610 | Msa0825640 | 0.847191 | 1.351488e-59 | -8.615850e-47 |
| Msa0825610 | Msa0985180 | 0.801569 | 8.465048e-49 | -8.615850e-47 |
| Msa0825610 | Msa1096070 | 0.804516 | 2.080863e-49 | -8.615850e-47 |
| Msa0825610 | Msa1292020 | 0.811330 | 7.390893e-51 | -8.615850e-47 |
| Msa0215990 | Msa0825610 | 0.824481 | 7.886435e-54 | -8.615850e-47 |
| Msa0237300 | Msa0825610 | 0.811211 | 7.841227e-51 | -8.615850e-47 |
| Msa0439960 | Msa0825610 | 0.812474 | 4.162537e-51 | -8.615850e-47 |
| Msa0274720 | Msa0825610 | 0.810515 | 1.109518e-50 | -8.615850e-47 |
| Msa0315520 | Msa0825610 | 0.816026 | 6.836160e-52 | -8.615850e-47 |
| Msa0336450 | Msa0825610 | 0.807701 | 4.444700e-50 | -8.615850e-47 |
| Msa0336540 | Msa0825610 | 0.805753 | 1.146583e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825610 | MtrunA17_Chr5g0447621 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| Msa0825610 | MtrunA17_Chr8g0376011 | 36.761 | 457 | 271 | 7 | 74 | 522 | 325 | 771 | 4.08e-87 | 286 |
| Msa0825610 | MtrunA17_Chr4g0019561 | 37.363 | 455 | 268 | 10 | 92 | 544 | 748 | 1187 | 8.57e-86 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825610 | AT5G48160.2 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| Msa0825610 | AT5G48160.1 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| Msa0825610 | AT3G07780.3 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| Msa0825610 | AT3G07780.1 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| Msa0825610 | AT3G07780.2 | 67.077 | 568 | 170 | 7 | 1 | 565 | 24 | 577 | 0.0 | 739 |
| Msa0825610 | AT3G63500.1 | 33.400 | 500 | 294 | 9 | 13 | 506 | 374 | 840 | 1.99e-78 | 265 |
| Msa0825610 | AT3G63500.2 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.12e-77 | 266 |
| Msa0825610 | AT3G63500.3 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.12e-77 | 266 |
| Msa0825610 | AT1G14740.1 | 34.396 | 439 | 243 | 6 | 89 | 522 | 305 | 703 | 7.12e-73 | 247 |
Find 166 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTTAAACTTGAAAATT+AGG | 0.148834 | 5_3:+65538917 | Msa0825610:three_prime_UTR |
| TCCCTGAATTCCAGTATTTA+TGG | 0.176236 | 5_3:-65537130 | None:intergenic |
| AGGAGAGAGAAAGGGGATTT+AGG | 0.191765 | 5_3:-65535416 | None:intergenic |
| CTAATGACTGCCACCCTTTC+CGG | 0.193878 | 5_3:+65538657 | Msa0825610:CDS |
| ATTAATTATAAGCACTTAAT+AGG | 0.209293 | 5_3:-65538899 | None:intergenic |
| GTAAAGGAGATCATGGATTT+TGG | 0.213920 | 5_3:-65538606 | None:intergenic |
| AAATATACTTAGCAACTAAT+TGG | 0.214209 | 5_3:-65539011 | None:intergenic |
| TGCCATAAATACTGGAATTC+AGG | 0.237888 | 5_3:+65537128 | Msa0825610:CDS |
| CTTGAGTTCTTCTGCTTCTC+TGG | 0.253475 | 5_3:-65538282 | None:intergenic |
| TGTTTCTGCACAGATGAAAA+TGG | 0.278620 | 5_3:-65535449 | None:intergenic |
| GGCACTGATCCACTCTTTAC+AGG | 0.283245 | 5_3:-65537432 | None:intergenic |
| CATCAGCTGGAAGCTGGTTT+TGG | 0.287912 | 5_3:-65537233 | None:intergenic |
| TGGTTCAATTCCATTGCATT+TGG | 0.288651 | 5_3:+65538773 | Msa0825610:three_prime_UTR |
| ATCGTTGTCTCTTGTTTCTT+CGG | 0.306196 | 5_3:+65536678 | Msa0825610:CDS |
| TTAGATTGACTGTCTGCTTT+GGG | 0.315236 | 5_3:-65538638 | None:intergenic |
| GGTTCAATTCCATTGCATTT+GGG | 0.319689 | 5_3:+65538774 | Msa0825610:three_prime_UTR |
| ATCCTTGTTGCCATAAATAC+TGG | 0.341420 | 5_3:+65537120 | Msa0825610:CDS |
| CTTCTGTTTCAAATAGTTGC+TGG | 0.354580 | 5_3:-65538474 | None:intergenic |
| ATCGATGAGAGGAGAGAGAA+AGG | 0.355577 | 5_3:-65535425 | None:intergenic |
| TCCCTCCACGACAGCAATCC+CGG | 0.370544 | 5_3:+65536638 | Msa0825610:CDS |
| ATCGTGGGATGAACCTCTTT+TGG | 0.374814 | 5_3:+65537613 | Msa0825610:CDS |
| ATTAGATTGACTGTCTGCTT+TGG | 0.379288 | 5_3:-65538639 | None:intergenic |
| TGGCCTCATTAGCCTTCAAT+TGG | 0.386901 | 5_3:-65538385 | None:intergenic |
| GAGCCTCTCAGCCTCTCGTT+TGG | 0.409388 | 5_3:-65538405 | None:intergenic |
| TGTTCTATGCAGTGTTTGTA+TGG | 0.409646 | 5_3:+65538866 | Msa0825610:three_prime_UTR |
| TAGAAATTACAACCAACAAT+TGG | 0.419727 | 5_3:-65538703 | None:intergenic |
| TGCGGACAGAATCAGTCTTC+AGG | 0.422728 | 5_3:+65536882 | Msa0825610:CDS |
| GACATTGATTCGAGCTCATC+GGG | 0.423325 | 5_3:+65537086 | Msa0825610:CDS |
| GTATGAGAAAATCAAATTGC+AGG | 0.425425 | 5_3:+65538529 | Msa0825610:CDS |
| TTTGTTAGTAGGATCTTTCA+TGG | 0.429043 | 5_3:+65537579 | Msa0825610:CDS |
| AATAGCATCAGCAGTAGGCC+AGG | 0.431940 | 5_3:-65536785 | None:intergenic |
| GATGTGATTTGTGTTCTCAT+TGG | 0.433032 | 5_3:+65537361 | Msa0825610:CDS |
| CACCTGAAAACCATTTCACT+TGG | 0.434640 | 5_3:-65537453 | None:intergenic |
| GGCTGATATGTTCCAATTGA+AGG | 0.436823 | 5_3:+65538373 | Msa0825610:CDS |
| ATAAGTTGAAATTCGAAACT+AGG | 0.440679 | 5_3:+65538841 | Msa0825610:three_prime_UTR |
| CACTTTCAGTAGGTGATTCA+CGG | 0.453441 | 5_3:-65536747 | None:intergenic |
| AGCTTCACCGATTGGATTGG+AGG | 0.456233 | 5_3:-65535482 | None:intergenic |
| TGGATCAGTGCCAAGTGAAA+TGG | 0.456270 | 5_3:+65537443 | Msa0825610:CDS |
| TCTTGCGAAGTCTGATAAAT+CGG | 0.461104 | 5_3:+65538439 | Msa0825610:CDS |
| CCCGGGATTGCTGTCGTGGA+GGG | 0.462782 | 5_3:-65536639 | None:intergenic |
| AGAAGCTTCACCGATTGGAT+TGG | 0.463018 | 5_3:-65535485 | None:intergenic |
| GCCATAAATACTGGAATTCA+GGG | 0.463071 | 5_3:+65537129 | Msa0825610:CDS |
| CCAGGCTCTTTGGAGAGTCT+AGG | 0.472168 | 5_3:-65538088 | None:intergenic |
| GATCGTCACACTTCCAAAAG+AGG | 0.472222 | 5_3:-65537626 | None:intergenic |
| ATACTCATCACGGGTTTGTC+CGG | 0.472397 | 5_3:-65538676 | None:intergenic |
| TGGAAGGTTGATTGCTCCAC+AGG | 0.475183 | 5_3:+65538124 | Msa0825610:CDS |
| TCGATGAGAGGAGAGAGAAA+GGG | 0.475434 | 5_3:-65535424 | None:intergenic |
| TGGAAGCTAAAGCAGCATGC+AGG | 0.476217 | 5_3:+65537676 | Msa0825610:CDS |
| ACTCTTTGTCAATTGTATAA+CGG | 0.476695 | 5_3:-65538750 | None:intergenic |
| CGATGAGAGGAGAGAGAAAG+GGG | 0.477005 | 5_3:-65535423 | None:intergenic |
| GTTCAATTCCATTGCATTTG+GGG | 0.478354 | 5_3:+65538775 | Msa0825610:three_prime_UTR |
| GCACTATAAGCCTTTGTGAA+TGG | 0.479255 | 5_3:+65538797 | Msa0825610:three_prime_UTR |
| TCCAACATTGTGCACCATCA+TGG | 0.480513 | 5_3:+65537526 | Msa0825610:CDS |
| GGCCATTGTAAAGGAGATCA+TGG | 0.483195 | 5_3:-65538613 | None:intergenic |
| ATGAGTATTGGTCCAATTGT+TGG | 0.486119 | 5_3:+65538691 | Msa0825610:exon |
| CCAACCCGGGATTGCTGTCG+TGG | 0.486754 | 5_3:-65536643 | None:intergenic |
| CAGAATTGCTGAAGTGGTGC+AGG | 0.488827 | 5_3:+65538157 | Msa0825610:CDS |
| CGACGAATAACTGACTGATC+AGG | 0.490361 | 5_3:-65536850 | None:intergenic |
| CTTTGGGAGGGCCATTGTAA+AGG | 0.496266 | 5_3:-65538622 | None:intergenic |
| GATTGACTGTCTGCTTTGGG+AGG | 0.497767 | 5_3:-65538635 | None:intergenic |
| ATTGCAGAAGCCACTGTTGT+TGG | 0.498959 | 5_3:-65537277 | None:intergenic |
| GGACTTCGAGTTATCCTTGA+GGG | 0.499090 | 5_3:+65536985 | Msa0825610:CDS |
| GCTTGTCTCCTGAGGATCCT+AGG | 0.499181 | 5_3:+65536707 | Msa0825610:CDS |
| AACAATCATCAGCTGGAAGC+TGG | 0.500810 | 5_3:-65537239 | None:intergenic |
| GCAGGAGGCTATACGAAAGA+TGG | 0.504278 | 5_3:+65538175 | Msa0825610:CDS |
| ACTTCGCAAGAGCAATCCTC+TGG | 0.508330 | 5_3:-65538427 | None:intergenic |
| TGCTATTGCTGCGAAGAAGA+TGG | 0.511035 | 5_3:+65536801 | Msa0825610:CDS |
| GCAAATAAGTTGCTCCCGTA+TGG | 0.512263 | 5_3:-65537400 | None:intergenic |
| TCAGTCTTCAGGACATTGCT+CGG | 0.513007 | 5_3:+65536893 | Msa0825610:CDS |
| GGACTTCAGAACTGTTAGGC+TGG | 0.513412 | 5_3:+65537490 | Msa0825610:CDS |
| CTCACACAGATTGTGCCATA+CGG | 0.513413 | 5_3:+65537385 | Msa0825610:CDS |
| CCTAGACTCTCCAAAGAGCC+TGG | 0.513548 | 5_3:+65538088 | Msa0825610:CDS |
| CCCTCCACGACAGCAATCCC+GGG | 0.515207 | 5_3:+65536639 | Msa0825610:CDS |
| GTAAATACATGCCGTTGGAT+TGG | 0.515809 | 5_3:+65537339 | Msa0825610:CDS |
| GAAGGCTCGCTTAGCTGTTG+AGG | 0.516614 | 5_3:+65538232 | Msa0825610:CDS |
| ATCACGGGTTTGTCCGGAAA+GGG | 0.518375 | 5_3:-65538670 | None:intergenic |
| GACAAACCCGTGATGAGTAT+TGG | 0.519442 | 5_3:+65538679 | Msa0825610:exon |
| GAGTTTGACCTAGGATCCTC+AGG | 0.521068 | 5_3:-65536715 | None:intergenic |
| GTTCCAATTGAAGGCTAATG+AGG | 0.521411 | 5_3:+65538382 | Msa0825610:CDS |
| TTGAAGTAAATACATGCCGT+TGG | 0.522716 | 5_3:+65537334 | Msa0825610:CDS |
| CCCATGATGGTGCACAATGT+TGG | 0.522804 | 5_3:-65537527 | None:intergenic |
| TAAGCCTTTGTGAATGGAAG+AGG | 0.525926 | 5_3:+65538803 | Msa0825610:three_prime_UTR |
| GACTTCAGAACTGTTAGGCT+GGG | 0.527791 | 5_3:+65537491 | Msa0825610:CDS |
| GGCTGCGACAGACTAATGTT+AGG | 0.528186 | 5_3:-65537162 | None:intergenic |
| ATTGACTGTCTGCTTTGGGA+GGG | 0.528716 | 5_3:-65538634 | None:intergenic |
| AGAAGCAGAAGAACTCAAGA+TGG | 0.529192 | 5_3:+65538286 | Msa0825610:CDS |
| CAGTGTTTGTATGGATATGC+TGG | 0.529285 | 5_3:+65538875 | Msa0825610:three_prime_UTR |
| ACGGGAGCAACTTATTTGCA+TGG | 0.531202 | 5_3:+65537404 | Msa0825610:CDS |
| AGACATTGATTCGAGCTCAT+CGG | 0.534133 | 5_3:+65537085 | Msa0825610:CDS |
| ATGAGCTCGAATCAATGTCT+TGG | 0.537389 | 5_3:-65537082 | None:intergenic |
| TGTTTGCAGTCCTCCAACCC+GGG | 0.541976 | 5_3:-65536656 | None:intergenic |
| AGCCTGGAAAATGTAGAAAG+TGG | 0.542593 | 5_3:+65538104 | Msa0825610:CDS |
| GTTATCCTTGAGGGAGGGAA+TGG | 0.544054 | 5_3:+65536994 | Msa0825610:CDS |
| TTGGAAGTGTGACGATCTCA+AGG | 0.544756 | 5_3:+65537632 | Msa0825610:CDS |
| CCAACATTGTGCACCATCAT+GGG | 0.546323 | 5_3:+65537527 | Msa0825610:CDS |
| CGACAGCAATCCCGGGTTGG+AGG | 0.547481 | 5_3:+65536646 | Msa0825610:CDS |
| CAGTCTTCAGGACATTGCTC+GGG | 0.548827 | 5_3:+65536894 | Msa0825610:CDS |
| ATTCTGTTGCATGCCTCCTG+TGG | 0.548889 | 5_3:-65538140 | None:intergenic |
| ACCCGGGATTGCTGTCGTGG+AGG | 0.553588 | 5_3:-65536640 | None:intergenic |
| AAAATCAAGCTCCCTCATCA+AGG | 0.557639 | 5_3:-65537559 | None:intergenic |
| TATTCTACGCAGTGTATGCA+TGG | 0.558369 | 5_3:+65538942 | Msa0825610:three_prime_UTR |
| TCACAAGAACAATCATCAGC+TGG | 0.558649 | 5_3:-65537246 | None:intergenic |
| CGGGAGCAACTTATTTGCAT+GGG | 0.558837 | 5_3:+65537405 | Msa0825610:CDS |
| ACAGAAGTTAAGTGAGGCTG+AGG | 0.558933 | 5_3:+65538490 | Msa0825610:CDS |
| GGAAGCTAAAGCAGCATGCA+GGG | 0.560687 | 5_3:+65537677 | Msa0825610:CDS |
| AGATTCTCCTCCAATCCAAT+CGG | 0.561940 | 5_3:+65535475 | Msa0825610:five_prime_UTR |
| GCTGCGAAGAAGATGGAGAA+TGG | 0.561971 | 5_3:+65536808 | Msa0825610:CDS |
| TCACACAGATTGTGCCATAC+GGG | 0.562732 | 5_3:+65537386 | Msa0825610:CDS |
| TCAGGTGTCAATCATGCAGT+AGG | 0.562912 | 5_3:+65537469 | Msa0825610:CDS |
| ATGTTTGCAGTCCTCCAACC+CGG | 0.567009 | 5_3:-65536657 | None:intergenic |
| GAATACATCAGCATTGAAGA+GGG | 0.569622 | 5_3:-65538584 | None:intergenic |
| ATTGTGCACCATCATGGGAT+GGG | 0.570954 | 5_3:+65537532 | Msa0825610:CDS |
| CTAGAACTAGCACTTTCAGT+AGG | 0.578007 | 5_3:-65536757 | None:intergenic |
| CATTGTGCACCATCATGGGA+TGG | 0.578553 | 5_3:+65537531 | Msa0825610:CDS |
| AGTAGGACTTCAGAACTGTT+AGG | 0.579004 | 5_3:+65537486 | Msa0825610:CDS |
| TTATACAATTGACAAAGAGT+TGG | 0.579432 | 5_3:+65538753 | Msa0825610:three_prime_UTR |
| GGACATTGCTCGGGAAAGAG+TGG | 0.584255 | 5_3:+65536903 | Msa0825610:CDS |
| GGAATACATCAGCATTGAAG+AGG | 0.585828 | 5_3:-65538585 | None:intergenic |
| CAATTGGAACATATCAGCCT+CGG | 0.587516 | 5_3:-65538369 | None:intergenic |
| GCATGCCATTCCCTCCCTCA+AGG | 0.588171 | 5_3:-65536999 | None:intergenic |
| CAGAAGAACTCAAGATGGAG+AGG | 0.588684 | 5_3:+65538291 | Msa0825610:CDS |
| CATCACGGGTTTGTCCGGAA+AGG | 0.588989 | 5_3:-65538671 | None:intergenic |
| TTGTGCACCATCATGGGATG+GGG | 0.590598 | 5_3:+65537533 | Msa0825610:CDS |
| AATTGGACCAATACTCATCA+CGG | 0.591741 | 5_3:-65538686 | None:intergenic |
| AAGGAATCCCCATCCCATGA+TGG | 0.593870 | 5_3:-65537540 | None:intergenic |
| GAAGATGAGAATGTTCAAGA+AGG | 0.594556 | 5_3:+65538214 | Msa0825610:CDS |
| ATGGTAGTAAAGACCATCGT+GGG | 0.598320 | 5_3:+65537598 | Msa0825610:CDS |
| GAGAGGCTGAGAGGCTCCAG+AGG | 0.598779 | 5_3:+65538411 | Msa0825610:CDS |
| ATTGGACCAATACTCATCAC+GGG | 0.601698 | 5_3:-65538685 | None:intergenic |
| CCACGACAGCAATCCCGGGT+TGG | 0.602524 | 5_3:+65536643 | Msa0825610:CDS |
| GGATCCTCGCTTGTCTCCTG+AGG | 0.602741 | 5_3:+65536699 | Msa0825610:CDS |
| TTCCAGTATTTATGGCAACA+AGG | 0.603589 | 5_3:-65537122 | None:intergenic |
| AGAAATATCTCAATCAGCGA+TGG | 0.603706 | 5_3:-65537183 | None:intergenic |
| TGGAAAATGTAGAAAGTGGA+AGG | 0.603944 | 5_3:+65538108 | Msa0825610:CDS |
| ATGCAACAGAATTGCTGAAG+TGG | 0.604458 | 5_3:+65538151 | Msa0825610:CDS |
| ATGAAAATGGAATCGATGAG+AGG | 0.607497 | 5_3:-65535436 | None:intergenic |
| ATCCATGATCTCCTTTACAA+TGG | 0.611502 | 5_3:+65538611 | Msa0825610:CDS |
| CTTCGAGTTATCCTTGAGGG+AGG | 0.614388 | 5_3:+65536988 | Msa0825610:CDS |
| TTCGAGTTATCCTTGAGGGA+GGG | 0.615596 | 5_3:+65536989 | Msa0825610:CDS |
| GGCTAATGAGGCCAAACGAG+AGG | 0.618483 | 5_3:+65538394 | Msa0825610:CDS |
| AATTGCTGAAGTGGTGCAGG+AGG | 0.618880 | 5_3:+65538160 | Msa0825610:CDS |
| AGGTTATCAGAGTTTGACCT+AGG | 0.619181 | 5_3:-65536724 | None:intergenic |
| TATTCGTCGTGTTTCTAGTG+CGG | 0.628975 | 5_3:+65536864 | Msa0825610:CDS |
| ACGGGTTTGTCCGGAAAGGG+TGG | 0.629535 | 5_3:-65538667 | None:intergenic |
| GTGCTAGTTCTAGAGAAACC+TGG | 0.630706 | 5_3:+65536767 | Msa0825610:CDS |
| TTTGAAACAGAAGTTAAGTG+AGG | 0.634933 | 5_3:+65538484 | Msa0825610:CDS |
| GCAGCAATAGCATCAGCAGT+AGG | 0.640719 | 5_3:-65536790 | None:intergenic |
| TTATAGTGCCCCAAATGCAA+TGG | 0.642750 | 5_3:-65538783 | None:intergenic |
| TGATCGTGAACTAGCAGACA+AGG | 0.644648 | 5_3:+65538259 | Msa0825610:CDS |
| ACAAATCACATCCAATCCAA+CGG | 0.645811 | 5_3:-65537350 | None:intergenic |
| GGATGGGGATTCCTTGATGA+GGG | 0.648889 | 5_3:+65537548 | Msa0825610:CDS |
| GGGATGGGGATTCCTTGATG+AGG | 0.651572 | 5_3:+65537547 | Msa0825610:CDS |
| AGGCCAAACGAGAGGCTGAG+AGG | 0.658904 | 5_3:+65538402 | Msa0825610:CDS |
| AAGGTTGATTGCTCCACAGG+AGG | 0.659574 | 5_3:+65538127 | Msa0825610:CDS |
| AGTACCTCTTCCATTCACAA+AGG | 0.664298 | 5_3:-65538807 | None:intergenic |
| ATGGGTCCTCCTGTAAAGAG+TGG | 0.666155 | 5_3:+65537423 | Msa0825610:CDS |
| TCTCGCTTATCGCAGAGCAG+TGG | 0.671798 | 5_3:+65538557 | Msa0825610:CDS |
| ACTGATCCACTCTTTACAGG+AGG | 0.681348 | 5_3:-65537429 | None:intergenic |
| CATGGTAGTAAAGACCATCG+TGG | 0.686464 | 5_3:+65537597 | Msa0825610:CDS |
| AAGAACTAGAGAGAATTGTG+AGG | 0.696370 | 5_3:+65538336 | Msa0825610:CDS |
| GAAACATGCACCAACAACAG+TGG | 0.702295 | 5_3:+65537267 | Msa0825610:CDS |
| TGGACTTCGAGTTATCCTTG+AGG | 0.704359 | 5_3:+65536984 | Msa0825610:CDS |
| GGATCCTCAGGAGACAAGCG+AGG | 0.706361 | 5_3:-65536703 | None:intergenic |
| AAAAGAGGTTCATCCCACGA+TGG | 0.725729 | 5_3:-65537611 | None:intergenic |
| AATACATCAGCATTGAAGAG+GGG | 0.734552 | 5_3:-65538583 | None:intergenic |
| TTTCAGTAGGTGATTCACGG+AGG | 0.740333 | 5_3:-65536744 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTAAAAAAACTAAATT+AGG | + | chr5_3:65537850-65537869 | Msa0825610:intron | 10.0% |
| !! | TTAATTTAAACTTGAAAATT+AGG | + | chr5_3:65538917-65538936 | Msa0825610:three_prime_UTR | 10.0% |
| !! | AAAATTGAAGATGAAAAAAT+AGG | - | chr5_3:65535524-65535543 | None:intergenic | 15.0% |
| !!! | TTTTCAAGTTTTGAAATTTA+TGG | + | chr5_3:65535639-65535658 | Msa0825610:intron | 15.0% |
| !! | ATTAATTATAAGCACTTAAT+AGG | - | chr5_3:65538902-65538921 | None:intergenic | 15.0% |
| !!! | TTGTTTTTGTTTAAGCTATA+AGG | + | chr5_3:65536358-65536377 | Msa0825610:intron | 20.0% |
| !! | TTAATCATCAAGGAAATTAT+AGG | - | chr5_3:65536530-65536549 | None:intergenic | 20.0% |
| !!! | TGACTGTATAAATATTTTCA+TGG | + | chr5_3:65536563-65536582 | Msa0825610:intron | 20.0% |
| !! | AAAACTGAAAAGTAGAAAAA+TGG | + | chr5_3:65537656-65537675 | Msa0825610:CDS | 20.0% |
| !!! | ATTCGTATGTGTTTAAAATT+GGG | - | chr5_3:65537930-65537949 | None:intergenic | 20.0% |
| !!! | TATTCGTATGTGTTTAAAAT+TGG | - | chr5_3:65537931-65537950 | None:intergenic | 20.0% |
| !! | GAATGAGGATAAATAAATAA+AGG | - | chr5_3:65538036-65538055 | None:intergenic | 20.0% |
| !! | AATTTATGGTCAATTTTGTG+TGG | + | chr5_3:65535653-65535672 | Msa0825610:intron | 25.0% |
| !!! | ATTTTGTTGTGAATTATGTG+TGG | + | chr5_3:65535794-65535813 | Msa0825610:intron | 25.0% |
| ! | AATCTAAGAAGCTACAAAAT+AGG | - | chr5_3:65535901-65535920 | None:intergenic | 25.0% |
| !! | GTGTTATAAGCTTTTATTGT+AGG | + | chr5_3:65536129-65536148 | Msa0825610:intron | 25.0% |
| ! | ATGCTATACACTACAAATTA+AGG | - | chr5_3:65536294-65536313 | None:intergenic | 25.0% |
| !!! | AATTGTTTTATATTAGAGCC+TGG | - | chr5_3:65536600-65536619 | None:intergenic | 25.0% |
| ! | GCTCTAATATAAAACAATTG+TGG | + | chr5_3:65536601-65536620 | Msa0825610:intron | 25.0% |
| ! | TAGAAATTACAACCAACAAT+TGG | - | chr5_3:65538706-65538725 | None:intergenic | 25.0% |
| ! | ACTCTTTGTCAATTGTATAA+CGG | - | chr5_3:65538753-65538772 | None:intergenic | 25.0% |
| ! | TTATACAATTGACAAAGAGT+TGG | + | chr5_3:65538753-65538772 | Msa0825610:three_prime_UTR | 25.0% |
| !! | ATAAGTTGAAATTCGAAACT+AGG | + | chr5_3:65538841-65538860 | Msa0825610:three_prime_UTR | 25.0% |
| CAAAACTAGATCGAAATTCA+CGG | - | chr5_3:65535575-65535594 | None:intergenic | 30.0% | |
| CATGAATTGTTGTAACTCTT+TGG | + | chr5_3:65535842-65535861 | Msa0825610:intron | 30.0% | |
| TCTAAGTTGTTTATCCAAAC+AGG | - | chr5_3:65535992-65536011 | None:intergenic | 30.0% | |
| ATAAACTGCTTATCCAAACA+GGG | - | chr5_3:65536015-65536034 | None:intergenic | 30.0% | |
| TATAAACTGCTTATCCAAAC+AGG | - | chr5_3:65536016-65536035 | None:intergenic | 30.0% | |
| CATGATAAGCGCTTATATAT+AGG | + | chr5_3:65536050-65536069 | Msa0825610:intron | 30.0% | |
| CTACAAATTAAGGATCTGTT+TGG | - | chr5_3:65536284-65536303 | None:intergenic | 30.0% | |
| ATAAGCACTTGAAGACTATT+AGG | - | chr5_3:65536470-65536489 | None:intergenic | 30.0% | |
| AATTATAGGACTGTTTGGAT+TGG | - | chr5_3:65536516-65536535 | None:intergenic | 30.0% | |
| AAGGAAATTATAGGACTGTT+TGG | - | chr5_3:65536521-65536540 | None:intergenic | 30.0% | |
| ACTAGAACAGTTAATCATCA+AGG | - | chr5_3:65536540-65536559 | None:intergenic | 30.0% | |
| TTTGTTAGTAGGATCTTTCA+TGG | + | chr5_3:65537579-65537598 | Msa0825610:CDS | 30.0% | |
| !! | GCAATATTGACTGTTTTTCA+AGG | + | chr5_3:65537699-65537718 | Msa0825610:CDS | 30.0% |
| ! | TATCTGCATTGACATAATTG+TGG | + | chr5_3:65537762-65537781 | Msa0825610:intron | 30.0% |
| CTCACTTTCTATATCACATT+TGG | + | chr5_3:65537806-65537825 | Msa0825610:intron | 30.0% | |
| TTTGGTTATGTCTGAACAAA+TGG | + | chr5_3:65537824-65537843 | Msa0825610:intron | 30.0% | |
| !! | GAAAAGCATTTGTTAGAATG+AGG | - | chr5_3:65538051-65538070 | None:intergenic | 30.0% |
| ! | TTTGAAACAGAAGTTAAGTG+AGG | + | chr5_3:65538484-65538503 | Msa0825610:CDS | 30.0% |
| GTATGAGAAAATCAAATTGC+AGG | + | chr5_3:65538529-65538548 | Msa0825610:CDS | 30.0% | |
| ATGAAAATGGAATCGATGAG+AGG | - | chr5_3:65535439-65535458 | None:intergenic | 35.0% | |
| ! | TGTTTCTGCACAGATGAAAA+TGG | - | chr5_3:65535452-65535471 | None:intergenic | 35.0% |
| ! | TTATGGTCAATTTTGTGTGG+TGG | + | chr5_3:65535656-65535675 | Msa0825610:intron | 35.0% |
| ! | TATGGTCAATTTTGTGTGGT+GGG | + | chr5_3:65535657-65535676 | Msa0825610:intron | 35.0% |
| ! | CTATGATGATGATGATGATG+TGG | + | chr5_3:65535727-65535746 | Msa0825610:intron | 35.0% |
| AATTATGTGCTGTGGTATGT+AGG | + | chr5_3:65535965-65535984 | Msa0825610:intron | 35.0% | |
| TAAACAACTTAGACCCTGTT+TGG | + | chr5_3:65535999-65536018 | Msa0825610:intron | 35.0% | |
| GGTGTGTTCATAAACTATCT+TGG | + | chr5_3:65536379-65536398 | Msa0825610:intron | 35.0% | |
| ! | TGTTTTATATTAGAGCCTGG+TGG | - | chr5_3:65536597-65536616 | None:intergenic | 35.0% |
| ! | ATCGTTGTCTCTTGTTTCTT+CGG | + | chr5_3:65536678-65536697 | Msa0825610:CDS | 35.0% |
| CTAAAAATTCACCAGGTAGA+CGG | - | chr5_3:65536951-65536970 | None:intergenic | 35.0% | |
| !! | TCTACCTGGTGAATTTTTAG+AGG | + | chr5_3:65536951-65536970 | Msa0825610:CDS | 35.0% |
| !! | TTTTTAGAGGAGCTGAAAAC+TGG | + | chr5_3:65536964-65536983 | Msa0825610:CDS | 35.0% |
| ATCCTTGTTGCCATAAATAC+TGG | + | chr5_3:65537120-65537139 | Msa0825610:CDS | 35.0% | |
| TTCCAGTATTTATGGCAACA+AGG | - | chr5_3:65537125-65537144 | None:intergenic | 35.0% | |
| TGCCATAAATACTGGAATTC+AGG | + | chr5_3:65537128-65537147 | Msa0825610:CDS | 35.0% | |
| GCCATAAATACTGGAATTCA+GGG | + | chr5_3:65537129-65537148 | Msa0825610:CDS | 35.0% | |
| TCCCTGAATTCCAGTATTTA+TGG | - | chr5_3:65537133-65537152 | None:intergenic | 35.0% | |
| AGAAATATCTCAATCAGCGA+TGG | - | chr5_3:65537186-65537205 | None:intergenic | 35.0% | |
| TTGAAGTAAATACATGCCGT+TGG | + | chr5_3:65537334-65537353 | Msa0825610:CDS | 35.0% | |
| ACAAATCACATCCAATCCAA+CGG | - | chr5_3:65537353-65537372 | None:intergenic | 35.0% | |
| ! | GATGTGATTTGTGTTCTCAT+TGG | + | chr5_3:65537361-65537380 | Msa0825610:CDS | 35.0% |
| ! | TTCCACTTTCTACATTTTCC+AGG | - | chr5_3:65538109-65538128 | None:intergenic | 35.0% |
| TGGAAAATGTAGAAAGTGGA+AGG | + | chr5_3:65538108-65538127 | Msa0825610:CDS | 35.0% | |
| GAAGATGAGAATGTTCAAGA+AGG | + | chr5_3:65538214-65538233 | Msa0825610:CDS | 35.0% | |
| AAGAACTAGAGAGAATTGTG+AGG | + | chr5_3:65538336-65538355 | Msa0825610:CDS | 35.0% | |
| TCTTGCGAAGTCTGATAAAT+CGG | + | chr5_3:65538439-65538458 | Msa0825610:CDS | 35.0% | |
| CTTCTGTTTCAAATAGTTGC+TGG | - | chr5_3:65538477-65538496 | None:intergenic | 35.0% | |
| ! | AATACATCAGCATTGAAGAG+GGG | - | chr5_3:65538586-65538605 | None:intergenic | 35.0% |
| ! | GAATACATCAGCATTGAAGA+GGG | - | chr5_3:65538587-65538606 | None:intergenic | 35.0% |
| ! | GTAAAGGAGATCATGGATTT+TGG | - | chr5_3:65538609-65538628 | None:intergenic | 35.0% |
| ATCCATGATCTCCTTTACAA+TGG | + | chr5_3:65538611-65538630 | Msa0825610:CDS | 35.0% | |
| TTAGATTGACTGTCTGCTTT+GGG | - | chr5_3:65538641-65538660 | None:intergenic | 35.0% | |
| ATTAGATTGACTGTCTGCTT+TGG | - | chr5_3:65538642-65538661 | None:intergenic | 35.0% | |
| AATTGGACCAATACTCATCA+CGG | - | chr5_3:65538689-65538708 | None:intergenic | 35.0% | |
| !! | ATGAGTATTGGTCCAATTGT+TGG | + | chr5_3:65538691-65538710 | Msa0825610:exon | 35.0% |
| TGGTTCAATTCCATTGCATT+TGG | + | chr5_3:65538773-65538792 | Msa0825610:three_prime_UTR | 35.0% | |
| GGTTCAATTCCATTGCATTT+GGG | + | chr5_3:65538774-65538793 | Msa0825610:three_prime_UTR | 35.0% | |
| GTTCAATTCCATTGCATTTG+GGG | + | chr5_3:65538775-65538794 | Msa0825610:three_prime_UTR | 35.0% | |
| TGTTCTATGCAGTGTTTGTA+TGG | + | chr5_3:65538866-65538885 | Msa0825610:three_prime_UTR | 35.0% | |
| AGATTCTCCTCCAATCCAAT+CGG | + | chr5_3:65535475-65535494 | Msa0825610:five_prime_UTR | 40.0% | |
| GCTGAATCAATTATGTGCTG+TGG | + | chr5_3:65535957-65535976 | Msa0825610:intron | 40.0% | |
| !! | TGTTTGGATTGGCTCATTTG+AGG | - | chr5_3:65536505-65536524 | None:intergenic | 40.0% |
| AGGTTATCAGAGTTTGACCT+AGG | - | chr5_3:65536727-65536746 | None:intergenic | 40.0% | |
| CACTTTCAGTAGGTGATTCA+CGG | - | chr5_3:65536750-65536769 | None:intergenic | 40.0% | |
| CTAGAACTAGCACTTTCAGT+AGG | - | chr5_3:65536760-65536779 | None:intergenic | 40.0% | |
| !! | TATTCGTCGTGTTTCTAGTG+CGG | + | chr5_3:65536864-65536883 | Msa0825610:CDS | 40.0% |
| ! | AGCTCCTCTAAAAATTCACC+AGG | - | chr5_3:65536958-65536977 | None:intergenic | 40.0% |
| ATGAGCTCGAATCAATGTCT+TGG | - | chr5_3:65537085-65537104 | None:intergenic | 40.0% | |
| !! | AGACATTGATTCGAGCTCAT+CGG | + | chr5_3:65537085-65537104 | Msa0825610:CDS | 40.0% |
| !! | GGTTTTGGCAAGCTATGTTT+CGG | - | chr5_3:65537221-65537240 | None:intergenic | 40.0% |
| TCACAAGAACAATCATCAGC+TGG | - | chr5_3:65537249-65537268 | None:intergenic | 40.0% | |
| GTAAATACATGCCGTTGGAT+TGG | + | chr5_3:65537339-65537358 | Msa0825610:CDS | 40.0% | |
| ! | TGCCAAGTGAAATGGTTTTC+AGG | + | chr5_3:65537451-65537470 | Msa0825610:CDS | 40.0% |
| CACCTGAAAACCATTTCACT+TGG | - | chr5_3:65537456-65537475 | None:intergenic | 40.0% | |
| AGTAGGACTTCAGAACTGTT+AGG | + | chr5_3:65537486-65537505 | Msa0825610:CDS | 40.0% | |
| AAAATCAAGCTCCCTCATCA+AGG | - | chr5_3:65537562-65537581 | None:intergenic | 40.0% | |
| ! | GGGAGCTTGATTTTGTTAGT+AGG | + | chr5_3:65537568-65537587 | Msa0825610:CDS | 40.0% |
| ATGGTAGTAAAGACCATCGT+GGG | + | chr5_3:65537598-65537617 | Msa0825610:CDS | 40.0% | |
| ! | TCTACATTTTCCAGGCTCTT+TGG | - | chr5_3:65538101-65538120 | None:intergenic | 40.0% |
| AGCCTGGAAAATGTAGAAAG+TGG | + | chr5_3:65538104-65538123 | Msa0825610:CDS | 40.0% | |
| ATGCAACAGAATTGCTGAAG+TGG | + | chr5_3:65538151-65538170 | Msa0825610:CDS | 40.0% | |
| AGAAGCAGAAGAACTCAAGA+TGG | + | chr5_3:65538286-65538305 | Msa0825610:CDS | 40.0% | |
| CAATTGGAACATATCAGCCT+CGG | - | chr5_3:65538372-65538391 | None:intergenic | 40.0% | |
| GGCTGATATGTTCCAATTGA+AGG | + | chr5_3:65538373-65538392 | Msa0825610:CDS | 40.0% | |
| GTTCCAATTGAAGGCTAATG+AGG | + | chr5_3:65538382-65538401 | Msa0825610:CDS | 40.0% | |
| ! | GGAATACATCAGCATTGAAG+AGG | - | chr5_3:65538588-65538607 | None:intergenic | 40.0% |
| ATTGGACCAATACTCATCAC+GGG | - | chr5_3:65538688-65538707 | None:intergenic | 40.0% | |
| TTATAGTGCCCCAAATGCAA+TGG | - | chr5_3:65538786-65538805 | None:intergenic | 40.0% | |
| GCACTATAAGCCTTTGTGAA+TGG | + | chr5_3:65538797-65538816 | Msa0825610:three_prime_UTR | 40.0% | |
| TAAGCCTTTGTGAATGGAAG+AGG | + | chr5_3:65538803-65538822 | Msa0825610:three_prime_UTR | 40.0% | |
| AGTACCTCTTCCATTCACAA+AGG | - | chr5_3:65538810-65538829 | None:intergenic | 40.0% | |
| CAGTGTTTGTATGGATATGC+TGG | + | chr5_3:65538875-65538894 | Msa0825610:three_prime_UTR | 40.0% | |
| TATTCTACGCAGTGTATGCA+TGG | + | chr5_3:65538942-65538961 | Msa0825610:three_prime_UTR | 40.0% | |
| AGGAGAGAGAAAGGGGATTT+AGG | - | chr5_3:65535419-65535438 | None:intergenic | 45.0% | |
| TCGATGAGAGGAGAGAGAAA+GGG | - | chr5_3:65535427-65535446 | None:intergenic | 45.0% | |
| ATCGATGAGAGGAGAGAGAA+AGG | - | chr5_3:65535428-65535447 | None:intergenic | 45.0% | |
| ! | AGAAGCTTCACCGATTGGAT+TGG | - | chr5_3:65535488-65535507 | None:intergenic | 45.0% |
| TGAGAAGAAGCTTCACCGAT+TGG | - | chr5_3:65535493-65535512 | None:intergenic | 45.0% | |
| TGTGGTATGTAGGTCCTGTT+TGG | + | chr5_3:65535975-65535994 | Msa0825610:intron | 45.0% | |
| TTTCAGTAGGTGATTCACGG+AGG | - | chr5_3:65536747-65536766 | None:intergenic | 45.0% | |
| !! | GTGCTAGTTCTAGAGAAACC+TGG | + | chr5_3:65536767-65536786 | Msa0825610:CDS | 45.0% |
| TGCTATTGCTGCGAAGAAGA+TGG | + | chr5_3:65536801-65536820 | Msa0825610:CDS | 45.0% | |
| CGACGAATAACTGACTGATC+AGG | - | chr5_3:65536853-65536872 | None:intergenic | 45.0% | |
| TCAGTCTTCAGGACATTGCT+CGG | + | chr5_3:65536893-65536912 | Msa0825610:CDS | 45.0% | |
| GAAAAAATGCTCCGTCTACC+TGG | + | chr5_3:65536937-65536956 | Msa0825610:CDS | 45.0% | |
| ! | TGGACTTCGAGTTATCCTTG+AGG | + | chr5_3:65536984-65537003 | Msa0825610:CDS | 45.0% |
| ! | GGACTTCGAGTTATCCTTGA+GGG | + | chr5_3:65536985-65537004 | Msa0825610:CDS | 45.0% |
| ! | TTCGAGTTATCCTTGAGGGA+GGG | + | chr5_3:65536989-65537008 | Msa0825610:CDS | 45.0% |
| !! | GACATTGATTCGAGCTCATC+GGG | + | chr5_3:65537086-65537105 | Msa0825610:CDS | 45.0% |
| AACAATCATCAGCTGGAAGC+TGG | - | chr5_3:65537242-65537261 | None:intergenic | 45.0% | |
| GAAACATGCACCAACAACAG+TGG | + | chr5_3:65537267-65537286 | Msa0825610:CDS | 45.0% | |
| ATTGCAGAAGCCACTGTTGT+TGG | - | chr5_3:65537280-65537299 | None:intergenic | 45.0% | |
| CTCACACAGATTGTGCCATA+CGG | + | chr5_3:65537385-65537404 | Msa0825610:CDS | 45.0% | |
| TCACACAGATTGTGCCATAC+GGG | + | chr5_3:65537386-65537405 | Msa0825610:CDS | 45.0% | |
| GCAAATAAGTTGCTCCCGTA+TGG | - | chr5_3:65537403-65537422 | None:intergenic | 45.0% | |
| ACGGGAGCAACTTATTTGCA+TGG | + | chr5_3:65537404-65537423 | Msa0825610:CDS | 45.0% | |
| CGGGAGCAACTTATTTGCAT+GGG | + | chr5_3:65537405-65537424 | Msa0825610:CDS | 45.0% | |
| ACTGATCCACTCTTTACAGG+AGG | - | chr5_3:65537432-65537451 | None:intergenic | 45.0% | |
| TGGATCAGTGCCAAGTGAAA+TGG | + | chr5_3:65537443-65537462 | Msa0825610:CDS | 45.0% | |
| TCAGGTGTCAATCATGCAGT+AGG | + | chr5_3:65537469-65537488 | Msa0825610:CDS | 45.0% | |
| GACTTCAGAACTGTTAGGCT+GGG | + | chr5_3:65537491-65537510 | Msa0825610:CDS | 45.0% | |
| TCCAACATTGTGCACCATCA+TGG | + | chr5_3:65537526-65537545 | Msa0825610:CDS | 45.0% | |
| CCAACATTGTGCACCATCAT+GGG | + | chr5_3:65537527-65537546 | Msa0825610:CDS | 45.0% | |
| ATTGTGCACCATCATGGGAT+GGG | + | chr5_3:65537532-65537551 | Msa0825610:CDS | 45.0% | |
| CATGGTAGTAAAGACCATCG+TGG | + | chr5_3:65537597-65537616 | Msa0825610:CDS | 45.0% | |
| AAAAGAGGTTCATCCCACGA+TGG | - | chr5_3:65537614-65537633 | None:intergenic | 45.0% | |
| ! | ATCGTGGGATGAACCTCTTT+TGG | + | chr5_3:65537613-65537632 | Msa0825610:CDS | 45.0% |
| GATCGTCACACTTCCAAAAG+AGG | - | chr5_3:65537629-65537648 | None:intergenic | 45.0% | |
| ! | TTGGAAGTGTGACGATCTCA+AGG | + | chr5_3:65537632-65537651 | Msa0825610:CDS | 45.0% |
| AAAGGCAACAGCAGCATATC+TGG | - | chr5_3:65538018-65538037 | None:intergenic | 45.0% | |
| CTAGGTCAAGCTCTTCATGT+AGG | - | chr5_3:65538073-65538092 | None:intergenic | 45.0% | |
| TGATCGTGAACTAGCAGACA+AGG | + | chr5_3:65538259-65538278 | Msa0825610:CDS | 45.0% | |
| CTTGAGTTCTTCTGCTTCTC+TGG | - | chr5_3:65538285-65538304 | None:intergenic | 45.0% | |
| CAGAAGAACTCAAGATGGAG+AGG | + | chr5_3:65538291-65538310 | Msa0825610:CDS | 45.0% | |
| TGTGAGGCTTAAAAATGCCG+AGG | + | chr5_3:65538352-65538371 | Msa0825610:CDS | 45.0% | |
| !! | TGGCCTCATTAGCCTTCAAT+TGG | - | chr5_3:65538388-65538407 | None:intergenic | 45.0% |
| ACAGAAGTTAAGTGAGGCTG+AGG | + | chr5_3:65538490-65538509 | Msa0825610:CDS | 45.0% | |
| GGCCATTGTAAAGGAGATCA+TGG | - | chr5_3:65538616-65538635 | None:intergenic | 45.0% | |
| !! | ATTGACTGTCTGCTTTGGGA+GGG | - | chr5_3:65538637-65538656 | None:intergenic | 45.0% |
| ATACTCATCACGGGTTTGTC+CGG | - | chr5_3:65538679-65538698 | None:intergenic | 45.0% | |
| GACAAACCCGTGATGAGTAT+TGG | + | chr5_3:65538679-65538698 | Msa0825610:exon | 45.0% | |
| CGATGAGAGGAGAGAGAAAG+GGG | - | chr5_3:65535426-65535445 | None:intergenic | 50.0% | |
| ! | AGCTTCACCGATTGGATTGG+AGG | - | chr5_3:65535485-65535504 | None:intergenic | 50.0% |
| TTCATGGACATGTCACCACC+AGG | + | chr5_3:65536579-65536598 | Msa0825610:intron | 50.0% | |
| ATGTTTGCAGTCCTCCAACC+CGG | - | chr5_3:65536660-65536679 | None:intergenic | 50.0% | |
| GAGTTTGACCTAGGATCCTC+AGG | - | chr5_3:65536718-65536737 | None:intergenic | 50.0% | |
| AATAGCATCAGCAGTAGGCC+AGG | - | chr5_3:65536788-65536807 | None:intergenic | 50.0% | |
| GCAGCAATAGCATCAGCAGT+AGG | - | chr5_3:65536793-65536812 | None:intergenic | 50.0% | |
| GCTGCGAAGAAGATGGAGAA+TGG | + | chr5_3:65536808-65536827 | Msa0825610:CDS | 50.0% | |
| TGCGGACAGAATCAGTCTTC+AGG | + | chr5_3:65536882-65536901 | Msa0825610:CDS | 50.0% | |
| CAGTCTTCAGGACATTGCTC+GGG | + | chr5_3:65536894-65536913 | Msa0825610:CDS | 50.0% | |
| ! | CTTCGAGTTATCCTTGAGGG+AGG | + | chr5_3:65536988-65537007 | Msa0825610:CDS | 50.0% |
| GTTATCCTTGAGGGAGGGAA+TGG | + | chr5_3:65536994-65537013 | Msa0825610:CDS | 50.0% | |
| GGCTGCGACAGACTAATGTT+AGG | - | chr5_3:65537165-65537184 | None:intergenic | 50.0% | |
| !! | CATCAGCTGGAAGCTGGTTT+TGG | - | chr5_3:65537236-65537255 | None:intergenic | 50.0% |
| ATGGGTCCTCCTGTAAAGAG+TGG | + | chr5_3:65537423-65537442 | Msa0825610:CDS | 50.0% | |
| !! | GGCACTGATCCACTCTTTAC+AGG | - | chr5_3:65537435-65537454 | None:intergenic | 50.0% |
| GGACTTCAGAACTGTTAGGC+TGG | + | chr5_3:65537490-65537509 | Msa0825610:CDS | 50.0% | |
| ! | CCCATGATGGTGCACAATGT+TGG | - | chr5_3:65537530-65537549 | None:intergenic | 50.0% |
| CATTGTGCACCATCATGGGA+TGG | + | chr5_3:65537531-65537550 | Msa0825610:CDS | 50.0% | |
| TTGTGCACCATCATGGGATG+GGG | + | chr5_3:65537533-65537552 | Msa0825610:CDS | 50.0% | |
| AAGGAATCCCCATCCCATGA+TGG | - | chr5_3:65537543-65537562 | None:intergenic | 50.0% | |
| GGATGGGGATTCCTTGATGA+GGG | + | chr5_3:65537548-65537567 | Msa0825610:CDS | 50.0% | |
| TGGAAGCTAAAGCAGCATGC+AGG | + | chr5_3:65537676-65537695 | Msa0825610:CDS | 50.0% | |
| GGAAGCTAAAGCAGCATGCA+GGG | + | chr5_3:65537677-65537696 | Msa0825610:CDS | 50.0% | |
| ! | TGGAAGGTTGATTGCTCCAC+AGG | + | chr5_3:65538124-65538143 | Msa0825610:CDS | 50.0% |
| ! | AAGGTTGATTGCTCCACAGG+AGG | + | chr5_3:65538127-65538146 | Msa0825610:CDS | 50.0% |
| ATTCTGTTGCATGCCTCCTG+TGG | - | chr5_3:65538143-65538162 | None:intergenic | 50.0% | |
| CAGAATTGCTGAAGTGGTGC+AGG | + | chr5_3:65538157-65538176 | Msa0825610:CDS | 50.0% | |
| AATTGCTGAAGTGGTGCAGG+AGG | + | chr5_3:65538160-65538179 | Msa0825610:CDS | 50.0% | |
| GCAGGAGGCTATACGAAAGA+TGG | + | chr5_3:65538175-65538194 | Msa0825610:CDS | 50.0% | |
| ACTTCGCAAGAGCAATCCTC+TGG | - | chr5_3:65538430-65538449 | None:intergenic | 50.0% | |
| ! | CTTTGGGAGGGCCATTGTAA+AGG | - | chr5_3:65538625-65538644 | None:intergenic | 50.0% |
| ! | GATTGACTGTCTGCTTTGGG+AGG | - | chr5_3:65538638-65538657 | None:intergenic | 50.0% |
| CTAATGACTGCCACCCTTTC+CGG | + | chr5_3:65538657-65538676 | Msa0825610:CDS | 50.0% | |
| ATCACGGGTTTGTCCGGAAA+GGG | - | chr5_3:65538673-65538692 | None:intergenic | 50.0% | |
| TGTTTGCAGTCCTCCAACCC+GGG | - | chr5_3:65536659-65536678 | None:intergenic | 55.0% | |
| GCTTGTCTCCTGAGGATCCT+AGG | + | chr5_3:65536707-65536726 | Msa0825610:CDS | 55.0% | |
| GGACATTGCTCGGGAAAGAG+TGG | + | chr5_3:65536903-65536922 | Msa0825610:CDS | 55.0% | |
| GGGATGGGGATTCCTTGATG+AGG | + | chr5_3:65537547-65537566 | Msa0825610:CDS | 55.0% | |
| ! | CCAGGCTCTTTGGAGAGTCT+AGG | - | chr5_3:65538091-65538110 | None:intergenic | 55.0% |
| CCTAGACTCTCCAAAGAGCC+TGG | + | chr5_3:65538088-65538107 | Msa0825610:CDS | 55.0% | |
| GAAGGCTCGCTTAGCTGTTG+AGG | + | chr5_3:65538232-65538251 | Msa0825610:CDS | 55.0% | |
| GGCTAATGAGGCCAAACGAG+AGG | + | chr5_3:65538394-65538413 | Msa0825610:CDS | 55.0% | |
| TCTCGCTTATCGCAGAGCAG+TGG | + | chr5_3:65538557-65538576 | Msa0825610:CDS | 55.0% | |
| CATCACGGGTTTGTCCGGAA+AGG | - | chr5_3:65538674-65538693 | None:intergenic | 55.0% | |
| TCCCTCCACGACAGCAATCC+CGG | + | chr5_3:65536638-65536657 | Msa0825610:CDS | 60.0% | |
| GGATCCTCGCTTGTCTCCTG+AGG | + | chr5_3:65536699-65536718 | Msa0825610:CDS | 60.0% | |
| GGATCCTCAGGAGACAAGCG+AGG | - | chr5_3:65536706-65536725 | None:intergenic | 60.0% | |
| GCATGCCATTCCCTCCCTCA+AGG | - | chr5_3:65537002-65537021 | None:intergenic | 60.0% | |
| AGGCCAAACGAGAGGCTGAG+AGG | + | chr5_3:65538402-65538421 | Msa0825610:CDS | 60.0% | |
| GAGCCTCTCAGCCTCTCGTT+TGG | - | chr5_3:65538408-65538427 | None:intergenic | 60.0% | |
| ACGGGTTTGTCCGGAAAGGG+TGG | - | chr5_3:65538670-65538689 | None:intergenic | 60.0% | |
| CCCGGGATTGCTGTCGTGGA+GGG | - | chr5_3:65536642-65536661 | None:intergenic | 65.0% | |
| CCCTCCACGACAGCAATCCC+GGG | + | chr5_3:65536639-65536658 | Msa0825610:CDS | 65.0% | |
| ACCCGGGATTGCTGTCGTGG+AGG | - | chr5_3:65536643-65536662 | None:intergenic | 65.0% | |
| CCAACCCGGGATTGCTGTCG+TGG | - | chr5_3:65536646-65536665 | None:intergenic | 65.0% | |
| CCACGACAGCAATCCCGGGT+TGG | + | chr5_3:65536643-65536662 | Msa0825610:CDS | 65.0% | |
| ! | CGACAGCAATCCCGGGTTGG+AGG | + | chr5_3:65536646-65536665 | Msa0825610:CDS | 65.0% |
| GAGAGGCTGAGAGGCTCCAG+AGG | + | chr5_3:65538411-65538430 | Msa0825610:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 65535404 | 65539030 | 65535404 | ID=Msa0825610;Name=Msa0825610 |
| chr5_3 | mRNA | 65535404 | 65539030 | 65535404 | ID=Msa0825610-mRNA-1;Parent=Msa0825610;Name=Msa0825610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=97|1|1|1|0.5|0.33|3|339|565 |
| chr5_3 | exon | 65535404 | 65535496 | 65535404 | ID=Msa0825610-mRNA-1:exon:20540;Parent=Msa0825610-mRNA-1 |
| chr5_3 | exon | 65536630 | 65537720 | 65536630 | ID=Msa0825610-mRNA-1:exon:20541;Parent=Msa0825610-mRNA-1 |
| chr5_3 | exon | 65538081 | 65539030 | 65538081 | ID=Msa0825610-mRNA-1:exon:20542;Parent=Msa0825610-mRNA-1 |
| chr5_3 | five_prime_UTR | 65535404 | 65535496 | 65535404 | ID=Msa0825610-mRNA-1:five_prime_utr;Parent=Msa0825610-mRNA-1 |
| chr5_3 | five_prime_UTR | 65536630 | 65536633 | 65536630 | ID=Msa0825610-mRNA-1:five_prime_utr;Parent=Msa0825610-mRNA-1 |
| chr5_3 | CDS | 65536634 | 65537720 | 65536634 | ID=Msa0825610-mRNA-1:cds;Parent=Msa0825610-mRNA-1 |
| chr5_3 | CDS | 65538081 | 65538691 | 65538081 | ID=Msa0825610-mRNA-1:cds;Parent=Msa0825610-mRNA-1 |
| chr5_3 | three_prime_UTR | 65538692 | 65539030 | 65538692 | ID=Msa0825610-mRNA-1:three_prime_utr;Parent=Msa0825610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
