Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827320 | XP_003597559.1 | 99.113 | 789 | 7 | 0 | 3 | 791 | 73 | 861 | 0.0 | 1626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827320 | sp|P09918|LOX3_PEA | 91.888 | 789 | 64 | 0 | 3 | 791 | 73 | 861 | 0.0 | 1525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827320 | G7IS30 | 99.113 | 789 | 7 | 0 | 3 | 791 | 73 | 861 | 0.0 | 1626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0755500 | Msa0827320 | 0.817722 | 2.845583e-52 | -8.615850e-47 |
| Msa0827320 | Msa0834830 | 0.819926 | 8.985036e-53 | -8.615850e-47 |
| Msa0827320 | Msa0967900 | 0.800906 | 1.156976e-48 | -8.615850e-47 |
| Msa0827320 | Msa1089250 | 0.993802 | 2.481202e-202 | -8.615850e-47 |
| Msa0827320 | Msa1320550 | 0.807551 | 4.783026e-50 | -8.615850e-47 |
| Msa0827320 | Msa1327690 | 0.805739 | 1.154185e-49 | -8.615850e-47 |
| Msa0827320 | Msa1364140 | 0.970876 | 2.741686e-132 | -8.615850e-47 |
| Msa0224080 | Msa0827320 | 0.953601 | 1.914833e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827320 | MtrunA17_Chr2g0329911 | 99.113 | 789 | 7 | 0 | 3 | 791 | 73 | 861 | 0.0 | 1626 |
| Msa0827320 | MtrunA17_Chr8g0342881 | 76.553 | 789 | 183 | 2 | 4 | 791 | 69 | 856 | 0.0 | 1287 |
| Msa0827320 | MtrunA17_Chr2g0329901 | 75.412 | 789 | 191 | 2 | 3 | 791 | 78 | 863 | 0.0 | 1261 |
| Msa0827320 | MtrunA17_Chr8g0343031 | 72.497 | 789 | 215 | 2 | 3 | 791 | 79 | 865 | 0.0 | 1209 |
| Msa0827320 | MtrunA17_Chr8g0342971 | 72.370 | 789 | 215 | 3 | 5 | 791 | 83 | 870 | 0.0 | 1208 |
| Msa0827320 | MtrunA17_Chr8g0343021 | 72.497 | 789 | 215 | 2 | 3 | 791 | 78 | 864 | 0.0 | 1207 |
| Msa0827320 | MtrunA17_Chr5g0406871 | 72.152 | 790 | 217 | 3 | 3 | 791 | 80 | 867 | 0.0 | 1201 |
| Msa0827320 | MtrunA17_Chr8g0342891 | 71.103 | 789 | 226 | 2 | 4 | 791 | 74 | 861 | 0.0 | 1199 |
| Msa0827320 | MtrunA17_Chr8g0344211 | 71.519 | 790 | 223 | 2 | 3 | 791 | 80 | 868 | 0.0 | 1196 |
| Msa0827320 | MtrunA17_Chr8g0342951 | 72.785 | 790 | 213 | 2 | 3 | 791 | 80 | 868 | 0.0 | 1195 |
| Msa0827320 | MtrunA17_Chr8g0343011 | 71.266 | 790 | 220 | 2 | 3 | 791 | 82 | 865 | 0.0 | 1187 |
| Msa0827320 | MtrunA17_Chr8g0342921 | 70.544 | 791 | 229 | 4 | 3 | 791 | 81 | 869 | 0.0 | 1171 |
| Msa0827320 | MtrunA17_Chr8g0342931 | 71.238 | 751 | 214 | 2 | 42 | 791 | 1 | 750 | 0.0 | 1119 |
| Msa0827320 | MtrunA17_Chr3g0120071 | 66.540 | 789 | 258 | 4 | 5 | 791 | 74 | 858 | 0.0 | 1106 |
| Msa0827320 | MtrunA17_Chr1g0191921 | 64.743 | 797 | 268 | 6 | 4 | 791 | 66 | 858 | 0.0 | 1074 |
| Msa0827320 | MtrunA17_Chr8g0342901 | 65.107 | 791 | 235 | 7 | 4 | 791 | 76 | 828 | 0.0 | 1060 |
| Msa0827320 | MtrunA17_Chr7g0272791 | 62.172 | 801 | 288 | 7 | 3 | 791 | 70 | 867 | 0.0 | 1033 |
| Msa0827320 | MtrunA17_Chr1g0205611 | 57.678 | 801 | 321 | 7 | 6 | 791 | 59 | 856 | 0.0 | 969 |
| Msa0827320 | MtrunA17_Chr8g0343001 | 59.722 | 792 | 271 | 7 | 3 | 791 | 61 | 807 | 0.0 | 964 |
| Msa0827320 | MtrunA17_Chr8g0342991 | 59.142 | 793 | 274 | 9 | 3 | 791 | 61 | 807 | 0.0 | 956 |
| Msa0827320 | MtrunA17_Chr8g0342981 | 58.261 | 805 | 289 | 11 | 3 | 791 | 50 | 823 | 0.0 | 925 |
| Msa0827320 | MtrunA17_Chr8g0344201 | 48.005 | 777 | 386 | 11 | 25 | 790 | 157 | 926 | 0.0 | 722 |
| Msa0827320 | MtrunA17_Chr8g0377101 | 46.253 | 774 | 393 | 12 | 32 | 791 | 152 | 916 | 0.0 | 686 |
| Msa0827320 | MtrunA17_Chr3g0118651 | 45.065 | 770 | 406 | 10 | 32 | 791 | 141 | 903 | 0.0 | 678 |
| Msa0827320 | MtrunA17_Chr3g0118641 | 43.035 | 804 | 425 | 13 | 3 | 791 | 117 | 902 | 0.0 | 658 |
| Msa0827320 | MtrunA17_Chr8g0338451 | 44.152 | 761 | 392 | 12 | 31 | 774 | 106 | 850 | 0.0 | 648 |
| Msa0827320 | MtrunA17_Chr4g0033171 | 45.698 | 709 | 371 | 9 | 91 | 791 | 23 | 725 | 0.0 | 624 |
| Msa0827320 | MtrunA17_Chr4g0047281 | 42.672 | 771 | 400 | 13 | 31 | 790 | 155 | 894 | 0.0 | 624 |
| Msa0827320 | MtrunA17_Chr3g0118621 | 43.693 | 769 | 411 | 11 | 36 | 791 | 106 | 865 | 0.0 | 613 |
| Msa0827320 | MtrunA17_Chr8g0344241 | 70.886 | 395 | 114 | 1 | 398 | 791 | 67 | 461 | 0.0 | 584 |
| Msa0827320 | MtrunA17_Chr8g0344241 | 50.685 | 73 | 29 | 2 | 217 | 289 | 9 | 74 | 2.73e-12 | 69.7 |
| Msa0827320 | MtrunA17_Chr6g0471951 | 40.426 | 517 | 261 | 7 | 246 | 757 | 11 | 485 | 9.33e-133 | 403 |
| Msa0827320 | MtrunA17_Chr7g0218231 | 59.829 | 117 | 46 | 1 | 446 | 561 | 16 | 132 | 3.58e-41 | 147 |
| Msa0827320 | MtrunA17_Chr3g0137991 | 48.413 | 126 | 46 | 3 | 668 | 791 | 1 | 109 | 9.36e-26 | 102 |
| Msa0827320 | MtrunA17_Chr6g0468081 | 53.933 | 89 | 40 | 1 | 474 | 561 | 1 | 89 | 2.39e-25 | 100 |
| Msa0827320 | MtrunA17_Chr2g0277191 | 58.333 | 60 | 24 | 1 | 665 | 724 | 58 | 116 | 1.32e-17 | 79.7 |
| Msa0827320 | MtrunA17_Chr7g0272781 | 54.839 | 62 | 28 | 0 | 684 | 745 | 8 | 69 | 3.08e-17 | 77.8 |
| Msa0827320 | MtrunA17_Chr4g0047271 | 42.857 | 91 | 51 | 1 | 701 | 790 | 1 | 91 | 6.64e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827320 | AT1G55020.1 | 62.453 | 799 | 282 | 7 | 4 | 791 | 68 | 859 | 0.0 | 1039 |
| Msa0827320 | AT3G22400.1 | 58.137 | 805 | 315 | 7 | 6 | 791 | 85 | 886 | 0.0 | 981 |
| Msa0827320 | AT1G72520.1 | 46.494 | 770 | 394 | 10 | 32 | 791 | 165 | 926 | 0.0 | 711 |
| Msa0827320 | AT1G17420.1 | 46.883 | 770 | 390 | 11 | 32 | 791 | 159 | 919 | 0.0 | 704 |
| Msa0827320 | AT3G45140.1 | 44.859 | 778 | 403 | 15 | 27 | 791 | 132 | 896 | 0.0 | 656 |
| Msa0827320 | AT1G67560.1 | 45.361 | 776 | 398 | 12 | 31 | 791 | 153 | 917 | 0.0 | 651 |
| Msa0827320 | AT3G45140.2 | 45.229 | 765 | 393 | 15 | 40 | 791 | 3 | 754 | 0.0 | 650 |
Find 183 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTTCCAAACTTCTTAA+AGG | 0.131647 | 5_3:+68475614 | None:intergenic |
| CTTCATGCAGCTGTTAATTT+TGG | 0.135058 | 5_3:-68475891 | Msa0827320:CDS |
| GCTTGGAAAGGCTACCTTTC+TGG | 0.147026 | 5_3:-68478687 | Msa0827320:CDS |
| GTCTTGGACCCATGTCTTTA+TGG | 0.177320 | 5_3:+68476097 | None:intergenic |
| GAAGTTTAACCTTTCCTATT+TGG | 0.185897 | 5_3:+68478020 | None:intergenic |
| TATGATGTCTACAATGATTT+AGG | 0.198014 | 5_3:-68478134 | Msa0827320:CDS |
| ACTCAATAATGCCATATTTA+AGG | 0.200843 | 5_3:-68476945 | Msa0827320:CDS |
| AGGATACAAAAGTTTATAAA+TGG | 0.201433 | 5_3:+68476528 | None:intergenic |
| TCGATAAGTGTCTGAAATTT+TGG | 0.216610 | 5_3:+68475738 | None:intergenic |
| CTCATGATGGATTAGATATA+TGG | 0.224741 | 5_3:-68476124 | Msa0827320:CDS |
| CTTCTAAAGTTTACAAGAAT+TGG | 0.234179 | 5_3:-68476396 | Msa0827320:CDS |
| TCTTCACGAGCTTGCATCTT+AGG | 0.236547 | 5_3:+68475957 | None:intergenic |
| GAAATACCTTGAAGTACTTT+AGG | 0.278008 | 5_3:+68477572 | None:intergenic |
| TTAGAGGCCTTTAAGAAGTT+TGG | 0.281957 | 5_3:-68475621 | Msa0827320:CDS |
| ACTGTGAGCCCTTCTAAATT+AGG | 0.288323 | 5_3:+68477123 | None:intergenic |
| GAGTTTATTCGCCTTAAATA+TGG | 0.300979 | 5_3:+68476934 | None:intergenic |
| TCTTCTCTGTAATGGACTAA+TGG | 0.308219 | 5_3:+68478221 | None:intergenic |
| CTTCCAAGAGATGAAGCTTT+TGG | 0.309488 | 5_3:-68477845 | Msa0827320:CDS |
| AAGTAGATGCTTCCATGATT+TGG | 0.311647 | 5_3:+68478506 | None:intergenic |
| ATTAGGTTCTAGGTGTTCTT+TGG | 0.320520 | 5_3:+68477140 | None:intergenic |
| GCCCTTCTAAATTAGGTTCT+AGG | 0.324988 | 5_3:+68477130 | None:intergenic |
| CCAATTCTTCTTCTCTGTAA+TGG | 0.332097 | 5_3:+68478213 | None:intergenic |
| CTTCAGATAGAGATACTATT+AGG | 0.343809 | 5_3:+68475459 | None:intergenic |
| GATAGCTTTGATGAAGTTCA+TGG | 0.345965 | 5_3:-68477710 | Msa0827320:CDS |
| CACCTAGAACCTAATTTAGA+AGG | 0.346924 | 5_3:-68477132 | Msa0827320:CDS |
| GAAGGATGAAGCAAAGTATA+AGG | 0.351751 | 5_3:+68475513 | None:intergenic |
| TGCCTGCTGATCTTATAAAA+AGG | 0.357335 | 5_3:-68476354 | Msa0827320:intron |
| AATCATGCTCGTCCTGTTCT+TGG | 0.365294 | 5_3:-68478092 | Msa0827320:CDS |
| ATCAGATACAAGGGCATTAG+AGG | 0.370748 | 5_3:-68475637 | Msa0827320:CDS |
| TATTCAGCTGACCCTTTCTC+TGG | 0.371851 | 5_3:+68475810 | None:intergenic |
| CTTGTATCTGATGTCCAGTT+TGG | 0.373343 | 5_3:+68475648 | None:intergenic |
| TGAAGACAGCAGATCACATT+TGG | 0.374523 | 5_3:+68477369 | None:intergenic |
| GAAGAATTGGATAATTTAAG+AGG | 0.378647 | 5_3:-68478200 | Msa0827320:CDS |
| TGACCAAAAGCTTCATCTCT+TGG | 0.391538 | 5_3:+68477842 | None:intergenic |
| GCGGTCAAGTTTGTGGTGTT+TGG | 0.393878 | 5_3:+68478457 | None:intergenic |
| GAACTGGCAGAAAGCCAAAT+AGG | 0.394315 | 5_3:-68478034 | Msa0827320:CDS |
| CGTGTATATATATACCTTGT+TGG | 0.397530 | 5_3:+68478424 | None:intergenic |
| GGATACAAAAGTTTATAAAT+GGG | 0.397641 | 5_3:+68476529 | None:intergenic |
| TCAAAGCTATCAAACTCATT+TGG | 0.400263 | 5_3:+68477722 | None:intergenic |
| TGACAGTACTATCTGGTTAC+TGG | 0.400978 | 5_3:-68476758 | Msa0827320:CDS |
| GATGATGACATGGGAATTCC+TGG | 0.404317 | 5_3:-68478596 | Msa0827320:CDS |
| CCATTACAGAGAAGAAGAAT+TGG | 0.410502 | 5_3:-68478213 | Msa0827320:CDS |
| AAGTTTGCACTACTGTCATA+TGG | 0.411943 | 5_3:-68475926 | Msa0827320:CDS |
| GTGTGGCAAACTCAACTCTA+TGG | 0.415566 | 5_3:+68476840 | None:intergenic |
| GTTTATCAACCCGCGCTAGA+AGG | 0.415970 | 5_3:-68476784 | Msa0827320:CDS |
| TCTAATCCATCATGAGCATA+AGG | 0.416079 | 5_3:+68476131 | None:intergenic |
| CAAGTTCTTTCCACCAAGCT+TGG | 0.416248 | 5_3:+68476021 | None:intergenic |
| AAATGTGATCTGCTGTCTTC+AGG | 0.419247 | 5_3:-68477367 | Msa0827320:intron |
| ATTTCTTTGAGCACAGGTAA+TGG | 0.423088 | 5_3:+68477635 | None:intergenic |
| GTAAGTCCTTCCTCACTAGA+AGG | 0.433641 | 5_3:+68475495 | None:intergenic |
| TTTGCAAGAGAAATGCTTGC+TGG | 0.439835 | 5_3:-68477399 | Msa0827320:CDS |
| AAGCTAGATAGTCAAGTCTA+TGG | 0.439854 | 5_3:-68477183 | Msa0827320:CDS |
| CCACCACCTAAAGTACTTCA+AGG | 0.442382 | 5_3:-68477578 | Msa0827320:intron |
| TACAAGAATTGGACTTTGCC+AGG | 0.442800 | 5_3:-68476385 | Msa0827320:CDS |
| CTACAATGATTTAGGAAATC+CGG | 0.445050 | 5_3:-68478126 | Msa0827320:CDS |
| CTTGAAGACATTCCAAATCA+TGG | 0.449276 | 5_3:-68478518 | Msa0827320:CDS |
| TAAACTGTTATTTAGAGGAA+TGG | 0.452635 | 5_3:-68476207 | Msa0827320:intron |
| AATTTAAGAGGAGATGGAAC+AGG | 0.457209 | 5_3:-68478188 | Msa0827320:CDS |
| TTGGATAATTTAAGAGGAGA+TGG | 0.457945 | 5_3:-68478194 | Msa0827320:CDS |
| ATTACCTCGTTACCAACATT+GGG | 0.468046 | 5_3:-68478656 | Msa0827320:CDS |
| CGAAAGATTTCTTTGAGCAC+AGG | 0.468335 | 5_3:+68477629 | None:intergenic |
| TTCTCTTGCTCGACAATCCC+TGG | 0.469936 | 5_3:-68476479 | Msa0827320:CDS |
| AAAGTATAAGGCATCTGAAC+CGG | 0.470881 | 5_3:+68475525 | None:intergenic |
| CATGCTCGTCCTGTTCTTGG+AGG | 0.471870 | 5_3:-68478089 | Msa0827320:CDS |
| AGGAGATTCATGCCAGAGAA+AGG | 0.472743 | 5_3:-68475822 | Msa0827320:CDS |
| GCACCATGTTCATCTCCGTC+AGG | 0.473569 | 5_3:+68476817 | None:intergenic |
| TCTACTTTGTATGCAACTCC+TGG | 0.474359 | 5_3:-68478490 | Msa0827320:CDS |
| AATTACCTCGTTACCAACAT+TGG | 0.475554 | 5_3:-68478657 | Msa0827320:CDS |
| TCATCAGACCCTCCAAGAAC+AGG | 0.477028 | 5_3:+68478080 | None:intergenic |
| GAGAGAGAGACAATCCAAAC+TGG | 0.477917 | 5_3:-68475662 | Msa0827320:CDS |
| TGGTGTTAAGCTTGTGGTAG+AGG | 0.478787 | 5_3:-68476159 | Msa0827320:CDS |
| TGATACCTCCATCGTTGACC+AGG | 0.480839 | 5_3:+68476461 | None:intergenic |
| CTGTTAGTTGCTATGACAAA+TGG | 0.485866 | 5_3:+68476571 | None:intergenic |
| CCTTGATAATATCTCTATAA+CGG | 0.488021 | 5_3:+68475710 | None:intergenic |
| TGAAGTTCATGGATTGTATG+AGG | 0.488443 | 5_3:-68477699 | Msa0827320:CDS |
| AGAAAATGCGGTCAAGTTTG+TGG | 0.492571 | 5_3:+68478450 | None:intergenic |
| CTTCATCCTTCTAGTGAGGA+AGG | 0.493335 | 5_3:-68475501 | Msa0827320:CDS |
| AAGATTACAGACTCTAATGC+TGG | 0.496355 | 5_3:+68477761 | None:intergenic |
| GCAAATGGAAAAGGGAAGCT+TGG | 0.496407 | 5_3:-68478704 | Msa0827320:CDS |
| ATTTAGAGGAATGGCAATTG+AGG | 0.498020 | 5_3:-68476198 | Msa0827320:intron |
| TAAACCGTCCAACTCTTAGT+AGG | 0.498943 | 5_3:-68475842 | Msa0827320:CDS |
| GATTACCCTTATGCTCATGA+TGG | 0.501130 | 5_3:-68476137 | Msa0827320:CDS |
| TACTATCTGGTTACTGGCTA+AGG | 0.505546 | 5_3:-68476752 | Msa0827320:CDS |
| TGAATATCCTTATCCTCGTA+GGG | 0.505776 | 5_3:-68478060 | Msa0827320:CDS |
| TTATTAATTGAACAGTAAGT+AGG | 0.507897 | 5_3:-68477446 | Msa0827320:intron |
| CGAGTAGCATAAGCCTTCGT+TGG | 0.513089 | 5_3:+68476907 | None:intergenic |
| CAAACTGGACATCAGATACA+AGG | 0.515129 | 5_3:-68475647 | Msa0827320:CDS |
| CCTTGAAGTACTTTAGGTGG+TGG | 0.515750 | 5_3:+68477578 | None:intergenic |
| ATCATCAACTTGTCAGCCAT+TGG | 0.519374 | 5_3:-68476702 | Msa0827320:intron |
| TGACTATCTAGCTTGCTTCG+CGG | 0.521367 | 5_3:+68477192 | None:intergenic |
| TCATGATGGATTAGATATAT+GGG | 0.524917 | 5_3:-68476123 | Msa0827320:CDS |
| GCTAGTCAAAAGTCCACAAA+AGG | 0.525330 | 5_3:-68475781 | Msa0827320:CDS |
| GTGTTTGGCATTATAAATCC+AGG | 0.526188 | 5_3:+68478472 | None:intergenic |
| GCTGACAAGTTGATGATAGC+AGG | 0.527862 | 5_3:+68476708 | None:intergenic |
| CCGTTATAGAGATATTATCA+AGG | 0.528835 | 5_3:-68475710 | Msa0827320:CDS |
| ATTCTGAACTCCAAGCTTGG+TGG | 0.533029 | 5_3:-68476031 | Msa0827320:CDS |
| AAGGTGTTGACAGTACTATC+TGG | 0.533260 | 5_3:-68476765 | Msa0827320:CDS |
| GGAGATTCATGCCAGAGAAA+GGG | 0.533470 | 5_3:-68475821 | Msa0827320:CDS |
| CTAATCCATCATGAGCATAA+GGG | 0.533765 | 5_3:+68476132 | None:intergenic |
| ATGAATATCCTTATCCTCGT+AGG | 0.539701 | 5_3:-68478061 | Msa0827320:CDS |
| TGGAAAGAACTTGTAGAGGT+TGG | 0.540154 | 5_3:-68476011 | Msa0827320:CDS |
| TTGGATTGTCTCTCTCTCCA+AGG | 0.544752 | 5_3:+68475667 | None:intergenic |
| TTGAGTCATGATGATCTAGC+AGG | 0.544752 | 5_3:+68476962 | None:intergenic |
| TTCTTGATGTAAAATGCTCC+AGG | 0.545064 | 5_3:+68478578 | None:intergenic |
| TTAACACCACATGGGGAAGA+TGG | 0.545155 | 5_3:+68476173 | None:intergenic |
| GGTAATTATACCTTCCAGAA+AGG | 0.548726 | 5_3:+68478673 | None:intergenic |
| TGTTCATCTCCGTCAGGGTG+TGG | 0.548827 | 5_3:+68476823 | None:intergenic |
| AAGATTCTGAACTCCAAGCT+TGG | 0.549849 | 5_3:-68476034 | Msa0827320:CDS |
| TTTGGACAGTATTCCTATGG+TGG | 0.549856 | 5_3:-68475873 | Msa0827320:CDS |
| GTCACTGCTCAAGAAAAGGA+TGG | 0.551825 | 5_3:+68476882 | None:intergenic |
| GATTTAGGAAATCCGGAGAA+AGG | 0.552556 | 5_3:-68478119 | Msa0827320:CDS |
| GTTTAATATTAAACCACCAT+AGG | 0.555608 | 5_3:+68475860 | None:intergenic |
| TGACAAAACTTTGAAGCCAC+TGG | 0.555755 | 5_3:-68476863 | Msa0827320:CDS |
| AACTTTAGAAGACATTTCCA+TGG | 0.557234 | 5_3:+68476408 | None:intergenic |
| CCCATGTGGTGTTAAGCTTG+TGG | 0.560091 | 5_3:-68476165 | Msa0827320:CDS |
| ACCACAAGCTTAACACCACA+TGG | 0.560657 | 5_3:+68476164 | None:intergenic |
| AATAAACTCGACTCCAACGA+AGG | 0.561264 | 5_3:-68476920 | Msa0827320:CDS |
| AAAGAAATCTTTCGAACCGA+TGG | 0.561372 | 5_3:-68477620 | Msa0827320:CDS |
| ATCTTGCTAAGTACATCTGT+TGG | 0.562012 | 5_3:+68477662 | None:intergenic |
| GTCATCTGTGGTGTAGTACA+AGG | 0.566258 | 5_3:+68476067 | None:intergenic |
| CTGTAATGGACTAATGGAGC+CGG | 0.568264 | 5_3:+68478227 | None:intergenic |
| GCTTCTGATGAAGTGTACCT+TGG | 0.568815 | 5_3:-68475684 | Msa0827320:CDS |
| AATGGAGCCGGTGTTTCACT+AGG | 0.568995 | 5_3:+68478239 | None:intergenic |
| AGAAGGGCTCACAGTAGAAG+AGG | 0.571068 | 5_3:-68477115 | Msa0827320:intron |
| TTTGTGGGGAAGATATTCCA+TGG | 0.571326 | 5_3:-68476425 | Msa0827320:CDS |
| GCTAAGACACCGTCTTGGAC+CGG | 0.576095 | 5_3:-68475544 | Msa0827320:CDS |
| GAGAAGCTAAGACACCGTCT+TGG | 0.580287 | 5_3:-68475549 | Msa0827320:CDS |
| TCGTTACCAACATTGGGAGC+AGG | 0.580669 | 5_3:-68478650 | Msa0827320:CDS |
| ATGCTCGTCCTGTTCTTGGA+GGG | 0.582766 | 5_3:-68478088 | Msa0827320:CDS |
| ACCTAGAACCTAATTTAGAA+GGG | 0.587489 | 5_3:-68477131 | Msa0827320:CDS |
| ATGAATCTCCTACTAAGAGT+TGG | 0.587805 | 5_3:+68475834 | None:intergenic |
| GAGAACGCAAAGAGTGGGAA+AGG | 0.590166 | 5_3:-68478166 | Msa0827320:CDS |
| CTTTAGGTGGTGGATACTTG+AGG | 0.590324 | 5_3:+68477588 | None:intergenic |
| ATAATATCTCTATAACGGAA+AGG | 0.590956 | 5_3:+68475715 | None:intergenic |
| CTGTCAACACCTTCTAGCGC+GGG | 0.591310 | 5_3:+68476775 | None:intergenic |
| GATTGTCCTGCTCCCAATGT+TGG | 0.594856 | 5_3:+68478644 | None:intergenic |
| TCAGCAGGCAATGCTTGACC+TGG | 0.597933 | 5_3:+68476367 | None:intergenic |
| GAACAGTAAGTAGGTCTGCA+TGG | 0.598243 | 5_3:-68477437 | Msa0827320:intron |
| CTATCTAGCTTGCTTCGCGG+AGG | 0.598943 | 5_3:+68477195 | None:intergenic |
| GAACAGGAGAACGCAAAGAG+TGG | 0.600744 | 5_3:-68478172 | Msa0827320:CDS |
| TATCTAGCTTGCTTCGCGGA+GGG | 0.601690 | 5_3:+68477196 | None:intergenic |
| CTTCAAGAGTCAAACTCACA+AGG | 0.601849 | 5_3:+68478534 | None:intergenic |
| CAGATCCTAAAAGTGAGAGT+AGG | 0.603906 | 5_3:-68477883 | Msa0827320:CDS |
| GAAGTTCATGGATTGTATGA+GGG | 0.604985 | 5_3:-68477698 | Msa0827320:CDS |
| CGACAATCCCTGGTCAACGA+TGG | 0.605478 | 5_3:-68476469 | Msa0827320:CDS |
| CTTGAGGAACTGTTCACCAT+CGG | 0.606084 | 5_3:+68477604 | None:intergenic |
| GAAAGCAGTATCTCAAAATG+TGG | 0.606848 | 5_3:-68477786 | Msa0827320:CDS |
| ATACCTTGAAGTACTTTAGG+TGG | 0.608053 | 5_3:+68477575 | None:intergenic |
| GTTCATGGATTGTATGAGGG+TGG | 0.608173 | 5_3:-68477695 | Msa0827320:CDS |
| CACCCTGACGGAGATGAACA+TGG | 0.612917 | 5_3:-68476820 | Msa0827320:CDS |
| GATACAAAAGTTTATAAATG+GGG | 0.613101 | 5_3:+68476530 | None:intergenic |
| AGATTACAGACTCTAATGCT+GGG | 0.615002 | 5_3:+68477762 | None:intergenic |
| GGCAGAAAGCCAAATAGGAA+AGG | 0.615902 | 5_3:-68478029 | Msa0827320:intron |
| TTTGCTTCATCCTTCTAGTG+AGG | 0.617630 | 5_3:-68475505 | Msa0827320:CDS |
| ATCTCCTACTAAGAGTTGGA+CGG | 0.618286 | 5_3:+68475838 | None:intergenic |
| GAACTTGTAGAGGTTGGTCA+TGG | 0.619559 | 5_3:-68476005 | Msa0827320:CDS |
| TGGAAAAGGGAAGCTTGGAA+AGG | 0.620625 | 5_3:-68478699 | Msa0827320:CDS |
| CACCATGTTCATCTCCGTCA+GGG | 0.621638 | 5_3:+68476818 | None:intergenic |
| CAATCCCTGGTCAACGATGG+AGG | 0.623263 | 5_3:-68476466 | Msa0827320:CDS |
| AGTACAAGGAGACATAGTCT+TGG | 0.623306 | 5_3:+68476081 | None:intergenic |
| AACAGGAGAACGCAAAGAGT+GGG | 0.626268 | 5_3:-68478171 | Msa0827320:CDS |
| ACTGTCAACACCTTCTAGCG+CGG | 0.626642 | 5_3:+68476774 | None:intergenic |
| ATATCTTCCTAGTGAAACAC+CGG | 0.628847 | 5_3:-68478246 | Msa0827320:CDS |
| TTGAGTTTGCCACACCCTGA+CGG | 0.630643 | 5_3:-68476832 | Msa0827320:CDS |
| TTGGTGGAAAGAACTTGTAG+AGG | 0.633539 | 5_3:-68476015 | Msa0827320:CDS |
| TATGGGCTGCCATAAAGACA+TGG | 0.637221 | 5_3:-68476106 | Msa0827320:CDS |
| CACAAGCTTAACACCACATG+GGG | 0.639779 | 5_3:+68476166 | None:intergenic |
| TGCTCCCAATGTTGGTAACG+AGG | 0.641203 | 5_3:+68478652 | None:intergenic |
| TTCATTGTATCACGATAGTG+AGG | 0.644461 | 5_3:+68476508 | None:intergenic |
| TTGTCTAAGTATGTCATCTG+TGG | 0.645976 | 5_3:+68476055 | None:intergenic |
| GGAAAGGCTACCTTTCTGGA+AGG | 0.651708 | 5_3:-68478683 | Msa0827320:CDS |
| GATACCTCCATCGTTGACCA+GGG | 0.658313 | 5_3:+68476462 | None:intergenic |
| CCACAAGCTTAACACCACAT+GGG | 0.659696 | 5_3:+68476165 | None:intergenic |
| CCTTGTTGGCAAAGAAAATG+CGG | 0.665349 | 5_3:+68478438 | None:intergenic |
| AATATCCTTATCCTCGTAGG+GGG | 0.667235 | 5_3:-68478058 | Msa0827320:CDS |
| GCATCTGAACCGGTCCAAGA+CGG | 0.668784 | 5_3:+68475535 | None:intergenic |
| AAACTCAACTCTATGGCCAG+TGG | 0.669772 | 5_3:+68476847 | None:intergenic |
| ATGGGCTGCCATAAAGACAT+GGG | 0.671205 | 5_3:-68476105 | Msa0827320:CDS |
| TTTGAATGGGATGATGACAT+GGG | 0.675782 | 5_3:-68478605 | Msa0827320:CDS |
| AAACTGGACATCAGATACAA+GGG | 0.678771 | 5_3:-68475646 | Msa0827320:CDS |
| GAATATCCTTATCCTCGTAG+GGG | 0.688179 | 5_3:-68478059 | Msa0827320:CDS |
| GCTTGCATCTTAGGCCACCA+CGG | 0.690210 | 5_3:+68475966 | None:intergenic |
| GAGGATCCATCTTCCCCATG+TGG | 0.690379 | 5_3:-68476179 | Msa0827320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAATTAAAAAATTGTA+TGG | - | chr5_3:68475897-68475916 | Msa0827320:CDS | 10.0% |
| !!! | AAAAAAAAAAAGTAGTTTTA+AGG | + | chr5_3:68476634-68476653 | None:intergenic | 10.0% |
| !! | TTAATTATATTATAATCGTA+TGG | - | chr5_3:68477121-68477140 | Msa0827320:CDS | 10.0% |
| !!! | ATTCAAAATTCATTTTGAAT+GGG | - | chr5_3:68475553-68475572 | Msa0827320:CDS | 15.0% |
| !! | TACCATATCATTTATTAATT+TGG | - | chr5_3:68476195-68476214 | Msa0827320:CDS | 15.0% |
| !! | TACCAAATTAATAAATGATA+TGG | + | chr5_3:68476200-68476219 | None:intergenic | 15.0% |
| !!! | ACAATTGTATTTGATTTTAA+AGG | - | chr5_3:68477164-68477183 | Msa0827320:CDS | 15.0% |
| !! | ACATTATAATTAACATAGAA+AGG | + | chr5_3:68477930-68477949 | None:intergenic | 15.0% |
| !!! | CATTCAAAATTCATTTTGAA+TGG | - | chr5_3:68475552-68475571 | Msa0827320:CDS | 20.0% |
| !! | TCATTACTAAATACTCATTT+AGG | - | chr5_3:68475817-68475836 | Msa0827320:CDS | 20.0% |
| !! | TAATTAAAAAATTGTATGGC+AGG | - | chr5_3:68475901-68475920 | Msa0827320:CDS | 20.0% |
| !!! | TCATTTATTAATTTGGTACT+TGG | - | chr5_3:68476202-68476221 | Msa0827320:intron | 20.0% |
| !! | TTATTAATTGAACAGTAAGT+AGG | - | chr5_3:68476725-68476744 | Msa0827320:CDS | 20.0% |
| !!! | ATTTACAAAACTTTTACCAA+TGG | + | chr5_3:68477488-68477507 | None:intergenic | 20.0% |
| !! | GATACAAAAGTTTATAAATG+GGG | + | chr5_3:68477644-68477663 | None:intergenic | 20.0% |
| !! | GGATACAAAAGTTTATAAAT+GGG | + | chr5_3:68477645-68477664 | None:intergenic | 20.0% |
| !! | AGGATACAAAAGTTTATAAA+TGG | + | chr5_3:68477646-68477665 | None:intergenic | 20.0% |
| !!! | TATTATAGTTTTCGTATAAC+TGG | - | chr5_3:68477871-68477890 | Msa0827320:CDS | 20.0% |
| ! | GAAGAATTGGATAATTTAAG+AGG | - | chr5_3:68475971-68475990 | Msa0827320:CDS | 25.0% |
| ! | TATGATGTCTACAATGATTT+AGG | - | chr5_3:68476037-68476056 | Msa0827320:CDS | 25.0% |
| !! | TCATCAGATTTTCTTACTTA+TGG | - | chr5_3:68476359-68476378 | Msa0827320:CDS | 25.0% |
| ! | ACTCAATAATGCCATATTTA+AGG | - | chr5_3:68477226-68477245 | Msa0827320:intron | 25.0% |
| !! | TCTTGATTCTTGATGATAAT+AGG | - | chr5_3:68477553-68477572 | Msa0827320:intron | 25.0% |
| !! | TCATCGAAAAAACATTTTTG+TGG | - | chr5_3:68477730-68477749 | Msa0827320:CDS | 25.0% |
| !! | CATCGAAAAAACATTTTTGT+GGG | - | chr5_3:68477731-68477750 | Msa0827320:CDS | 25.0% |
| !! | ATCGAAAAAACATTTTTGTG+GGG | - | chr5_3:68477732-68477751 | Msa0827320:CDS | 25.0% |
| !!! | CTTCTAAAGTTTACAAGAAT+TGG | - | chr5_3:68477775-68477794 | Msa0827320:CDS | 25.0% |
| !! | ATAGAAAGGTCTTTAAGTTT+AGG | + | chr5_3:68477916-68477935 | None:intergenic | 25.0% |
| !! | GTTTGTAAACTGTTATTTAG+AGG | - | chr5_3:68477959-68477978 | Msa0827320:intron | 25.0% |
| !! | TAAACTGTTATTTAGAGGAA+TGG | - | chr5_3:68477964-68477983 | Msa0827320:intron | 25.0% |
| !!! | TCATGATGGATTAGATATAT+GGG | - | chr5_3:68478048-68478067 | Msa0827320:CDS | 25.0% |
| ! | GTTTAATATTAAACCACCAT+AGG | + | chr5_3:68478314-68478333 | None:intergenic | 25.0% |
| !! | ATAATATCTCTATAACGGAA+AGG | + | chr5_3:68478459-68478478 | None:intergenic | 25.0% |
| !! | CCTTGATAATATCTCTATAA+CGG | + | chr5_3:68478464-68478483 | None:intergenic | 25.0% |
| ! | CTTATTTCCAAACTTCTTAA+AGG | + | chr5_3:68478560-68478579 | None:intergenic | 25.0% |
| CGTGTATATATATACCTTGT+TGG | + | chr5_3:68475750-68475769 | None:intergenic | 30.0% | |
| ATATATATACACGTGTAACC+AGG | - | chr5_3:68475757-68475776 | Msa0827320:CDS | 30.0% | |
| ACACAGGTGTATGAAAAATT+AGG | - | chr5_3:68475784-68475803 | Msa0827320:CDS | 30.0% | |
| ATTATCTTCCTCGTGATTTA+TGG | + | chr5_3:68475885-68475904 | None:intergenic | 30.0% | |
| TTGGATAATTTAAGAGGAGA+TGG | - | chr5_3:68475977-68475996 | Msa0827320:CDS | 30.0% | |
| CTACAATGATTTAGGAAATC+CGG | - | chr5_3:68476045-68476064 | Msa0827320:CDS | 30.0% | |
| GAAGTTTAACCTTTCCTATT+TGG | + | chr5_3:68476154-68476173 | None:intergenic | 30.0% | |
| TCAAAGCTATCAAACTCATT+TGG | + | chr5_3:68476452-68476471 | None:intergenic | 30.0% | |
| ! | GAAATACCTTGAAGTACTTT+AGG | + | chr5_3:68476602-68476621 | None:intergenic | 30.0% |
| !! | AGATCCAAAAGCACTTAATA+GGG | + | chr5_3:68476669-68476688 | None:intergenic | 30.0% |
| AACTACTCTAAACCAAAAGT+TGG | - | chr5_3:68476850-68476869 | Msa0827320:CDS | 30.0% | |
| ! | TGCAAAGAAAATCCAACTTT+TGG | + | chr5_3:68476865-68476884 | None:intergenic | 30.0% |
| GATCATTGTTTGGTTATTAC+AGG | - | chr5_3:68476948-68476967 | Msa0827320:CDS | 30.0% | |
| ACCTAGAACCTAATTTAGAA+GGG | - | chr5_3:68477040-68477059 | Msa0827320:intron | 30.0% | |
| GAGTTTATTCGCCTTAAATA+TGG | + | chr5_3:68477240-68477259 | None:intergenic | 30.0% | |
| ! | AACTTTAGAAGACATTTCCA+TGG | + | chr5_3:68477766-68477785 | None:intergenic | 30.0% |
| ! | TACCTTTTTATAAGATCAGC+AGG | + | chr5_3:68477822-68477841 | None:intergenic | 30.0% |
| !! | CTCATGATGGATTAGATATA+TGG | - | chr5_3:68478047-68478066 | Msa0827320:CDS | 30.0% |
| ! | AATTTTGGACAGTATTCCTA+TGG | - | chr5_3:68478295-68478314 | Msa0827320:intron | 30.0% |
| !! | TCGATAAGTGTCTGAAATTT+TGG | + | chr5_3:68478436-68478455 | None:intergenic | 30.0% |
| CCGTTATAGAGATATTATCA+AGG | - | chr5_3:68478461-68478480 | Msa0827320:CDS | 30.0% | |
| GGTAATTATACCTTCCAGAA+AGG | + | chr5_3:68475501-68475520 | None:intergenic | 35.0% | |
| AATTACCTCGTTACCAACAT+TGG | - | chr5_3:68475514-68475533 | Msa0827320:CDS | 35.0% | |
| ATTACCTCGTTACCAACATT+GGG | - | chr5_3:68475515-68475534 | Msa0827320:CDS | 35.0% | |
| ! | TTTTGAATGGGATGATGACA+TGG | - | chr5_3:68475565-68475584 | Msa0827320:CDS | 35.0% |
| TTTGAATGGGATGATGACAT+GGG | - | chr5_3:68475566-68475585 | Msa0827320:CDS | 35.0% | |
| TTCTTGATGTAAAATGCTCC+AGG | + | chr5_3:68475596-68475615 | None:intergenic | 35.0% | |
| CTTGAAGACATTCCAAATCA+TGG | - | chr5_3:68475653-68475672 | Msa0827320:CDS | 35.0% | |
| AAGTAGATGCTTCCATGATT+TGG | + | chr5_3:68475668-68475687 | None:intergenic | 35.0% | |
| GTGTTTGGCATTATAAATCC+AGG | + | chr5_3:68475702-68475721 | None:intergenic | 35.0% | |
| ACTTTAAGCCATAAATCACG+AGG | - | chr5_3:68475874-68475893 | Msa0827320:CDS | 35.0% | |
| ATATCTTCCTAGTGAAACAC+CGG | - | chr5_3:68475925-68475944 | Msa0827320:CDS | 35.0% | |
| !! | TCTTCTCTGTAATGGACTAA+TGG | + | chr5_3:68475953-68475972 | None:intergenic | 35.0% |
| CCAATTCTTCTTCTCTGTAA+TGG | + | chr5_3:68475961-68475980 | None:intergenic | 35.0% | |
| CCATTACAGAGAAGAAGAAT+TGG | - | chr5_3:68475958-68475977 | Msa0827320:CDS | 35.0% | |
| AATTTAAGAGGAGATGGAAC+AGG | - | chr5_3:68475983-68476002 | Msa0827320:CDS | 35.0% | |
| ATGAATATCCTTATCCTCGT+AGG | - | chr5_3:68476110-68476129 | Msa0827320:CDS | 35.0% | |
| TGAATATCCTTATCCTCGTA+GGG | - | chr5_3:68476111-68476130 | Msa0827320:CDS | 35.0% | |
| GAAAGCAGTATCTCAAAATG+TGG | - | chr5_3:68476385-68476404 | Msa0827320:CDS | 35.0% | |
| AGATTACAGACTCTAATGCT+GGG | + | chr5_3:68476412-68476431 | None:intergenic | 35.0% | |
| AAGATTACAGACTCTAATGC+TGG | + | chr5_3:68476413-68476432 | None:intergenic | 35.0% | |
| !! | GATAGCTTTGATGAAGTTCA+TGG | - | chr5_3:68476461-68476480 | Msa0827320:CDS | 35.0% |
| ! | TGAAGTTCATGGATTGTATG+AGG | - | chr5_3:68476472-68476491 | Msa0827320:CDS | 35.0% |
| ! | GAAGTTCATGGATTGTATGA+GGG | - | chr5_3:68476473-68476492 | Msa0827320:CDS | 35.0% |
| ATCTTGCTAAGTACATCTGT+TGG | + | chr5_3:68476512-68476531 | None:intergenic | 35.0% | |
| ATTTCTTTGAGCACAGGTAA+TGG | + | chr5_3:68476539-68476558 | None:intergenic | 35.0% | |
| AAAGAAATCTTTCGAACCGA+TGG | - | chr5_3:68476551-68476570 | Msa0827320:CDS | 35.0% | |
| ! | ATACCTTGAAGTACTTTAGG+TGG | + | chr5_3:68476599-68476618 | None:intergenic | 35.0% |
| !! | GATCCAAAAGCACTTAATAG+GGG | + | chr5_3:68476668-68476687 | None:intergenic | 35.0% |
| !! | GAGATCCAAAAGCACTTAAT+AGG | + | chr5_3:68476670-68476689 | None:intergenic | 35.0% |
| ! | TGTCATTAGTTCGATGGATT+TGG | - | chr5_3:68476911-68476930 | Msa0827320:CDS | 35.0% |
| ! | GTCATTAGTTCGATGGATTT+GGG | - | chr5_3:68476912-68476931 | Msa0827320:CDS | 35.0% |
| CTTCATGAAGGATCATTGTT+TGG | - | chr5_3:68476938-68476957 | Msa0827320:CDS | 35.0% | |
| AAGCTAGATAGTCAAGTCTA+TGG | - | chr5_3:68476988-68477007 | Msa0827320:CDS | 35.0% | |
| !! | ATTAGGTTCTAGGTGTTCTT+TGG | + | chr5_3:68477034-68477053 | None:intergenic | 35.0% |
| CACCTAGAACCTAATTTAGA+AGG | - | chr5_3:68477039-68477058 | Msa0827320:intron | 35.0% | |
| ! | TTTTGTCACTGCTCAAGAAA+AGG | + | chr5_3:68477296-68477315 | None:intergenic | 35.0% |
| CTGTTAGTTGCTATGACAAA+TGG | + | chr5_3:68477603-68477622 | None:intergenic | 35.0% | |
| TTCATTGTATCACGATAGTG+AGG | + | chr5_3:68477666-68477685 | None:intergenic | 35.0% | |
| TGCCTGCTGATCTTATAAAA+AGG | - | chr5_3:68477817-68477836 | Msa0827320:CDS | 35.0% | |
| ATTTAGAGGAATGGCAATTG+AGG | - | chr5_3:68477973-68477992 | Msa0827320:intron | 35.0% | |
| CTAATCCATCATGAGCATAA+GGG | + | chr5_3:68478042-68478061 | None:intergenic | 35.0% | |
| TCTAATCCATCATGAGCATA+AGG | + | chr5_3:68478043-68478062 | None:intergenic | 35.0% | |
| TTGTCTAAGTATGTCATCTG+TGG | + | chr5_3:68478119-68478138 | None:intergenic | 35.0% | |
| AAGTTTGCACTACTGTCATA+TGG | - | chr5_3:68478245-68478264 | Msa0827320:CDS | 35.0% | |
| ! | CTTCATGCAGCTGTTAATTT+TGG | - | chr5_3:68478280-68478299 | Msa0827320:intron | 35.0% |
| ATGAATCTCCTACTAAGAGT+TGG | + | chr5_3:68478340-68478359 | None:intergenic | 35.0% | |
| AAACTGGACATCAGATACAA+GGG | - | chr5_3:68478525-68478544 | Msa0827320:CDS | 35.0% | |
| ! | TTAGAGGCCTTTAAGAAGTT+TGG | - | chr5_3:68478550-68478569 | Msa0827320:CDS | 35.0% |
| ! | AAAGTATAAGGCATCTGAAC+CGG | + | chr5_3:68478649-68478668 | None:intergenic | 35.0% |
| GAAGGATGAAGCAAAGTATA+AGG | + | chr5_3:68478661-68478680 | None:intergenic | 35.0% | |
| CTTCAAGAGTCAAACTCACA+AGG | + | chr5_3:68475640-68475659 | None:intergenic | 40.0% | |
| TCTACTTTGTATGCAACTCC+TGG | - | chr5_3:68475681-68475700 | Msa0827320:CDS | 40.0% | |
| AGAAAATGCGGTCAAGTTTG+TGG | + | chr5_3:68475724-68475743 | None:intergenic | 40.0% | |
| CCTTGTTGGCAAAGAAAATG+CGG | + | chr5_3:68475736-68475755 | None:intergenic | 40.0% | |
| GATTTAGGAAATCCGGAGAA+AGG | - | chr5_3:68476052-68476071 | Msa0827320:CDS | 40.0% | |
| ! | GCATGATTTTCACCTTTCTC+CGG | + | chr5_3:68476067-68476086 | None:intergenic | 40.0% |
| GAATATCCTTATCCTCGTAG+GGG | - | chr5_3:68476112-68476131 | Msa0827320:CDS | 40.0% | |
| AATATCCTTATCCTCGTAGG+GGG | - | chr5_3:68476113-68476132 | Msa0827320:CDS | 40.0% | |
| CAGATCCTAAAAGTGAGAGT+AGG | - | chr5_3:68476288-68476307 | Msa0827320:intron | 40.0% | |
| !! | TCACTCCTACTCTCACTTTT+AGG | + | chr5_3:68476296-68476315 | None:intergenic | 40.0% |
| ! | CTTCCAAGAGATGAAGCTTT+TGG | - | chr5_3:68476326-68476345 | Msa0827320:intron | 40.0% |
| TGACCAAAAGCTTCATCTCT+TGG | + | chr5_3:68476332-68476351 | None:intergenic | 40.0% | |
| CGAAAGATTTCTTTGAGCAC+AGG | + | chr5_3:68476545-68476564 | None:intergenic | 40.0% | |
| ! | ATGCCCCTATTAAGTGCTTT+TGG | - | chr5_3:68476662-68476681 | Msa0827320:intron | 40.0% |
| TTTGCAAGAGAAATGCTTGC+TGG | - | chr5_3:68476772-68476791 | Msa0827320:CDS | 40.0% | |
| TGAAGACAGCAGATCACATT+TGG | + | chr5_3:68476805-68476824 | None:intergenic | 40.0% | |
| AAATGTGATCTGCTGTCTTC+AGG | - | chr5_3:68476804-68476823 | Msa0827320:CDS | 40.0% | |
| GATCGATGTCATTAGTTCGA+TGG | - | chr5_3:68476905-68476924 | Msa0827320:CDS | 40.0% | |
| GCCCTTCTAAATTAGGTTCT+AGG | + | chr5_3:68477044-68477063 | None:intergenic | 40.0% | |
| ACTGTGAGCCCTTCTAAATT+AGG | + | chr5_3:68477051-68477070 | None:intergenic | 40.0% | |
| TTGAGTCATGATGATCTAGC+AGG | + | chr5_3:68477212-68477231 | None:intergenic | 40.0% | |
| AATAAACTCGACTCCAACGA+AGG | - | chr5_3:68477251-68477270 | Msa0827320:intron | 40.0% | |
| !! | TGACAAAACTTTGAAGCCAC+TGG | - | chr5_3:68477308-68477327 | Msa0827320:intron | 40.0% |
| !! | AAGGTGTTGACAGTACTATC+TGG | - | chr5_3:68477406-68477425 | Msa0827320:CDS | 40.0% |
| TGACAGTACTATCTGGTTAC+TGG | - | chr5_3:68477413-68477432 | Msa0827320:CDS | 40.0% | |
| ! | TACTATCTGGTTACTGGCTA+AGG | - | chr5_3:68477419-68477438 | Msa0827320:CDS | 40.0% |
| ATCATCAACTTGTCAGCCAT+TGG | - | chr5_3:68477469-68477488 | Msa0827320:intron | 40.0% | |
| TTTGTGGGGAAGATATTCCA+TGG | - | chr5_3:68477746-68477765 | Msa0827320:CDS | 40.0% | |
| TACAAGAATTGGACTTTGCC+AGG | - | chr5_3:68477786-68477805 | Msa0827320:CDS | 40.0% | |
| GATTACCCTTATGCTCATGA+TGG | - | chr5_3:68478034-68478053 | Msa0827320:CDS | 40.0% | |
| AGTACAAGGAGACATAGTCT+TGG | + | chr5_3:68478093-68478112 | None:intergenic | 40.0% | |
| AAGATTCTGAACTCCAAGCT+TGG | - | chr5_3:68478137-68478156 | Msa0827320:CDS | 40.0% | |
| TTGGTGGAAAGAACTTGTAG+AGG | - | chr5_3:68478156-68478175 | Msa0827320:CDS | 40.0% | |
| TGGAAAGAACTTGTAGAGGT+TGG | - | chr5_3:68478160-68478179 | Msa0827320:CDS | 40.0% | |
| TTTGGACAGTATTCCTATGG+TGG | - | chr5_3:68478298-68478317 | Msa0827320:intron | 40.0% | |
| TAAACCGTCCAACTCTTAGT+AGG | - | chr5_3:68478329-68478348 | Msa0827320:intron | 40.0% | |
| ATCTCCTACTAAGAGTTGGA+CGG | + | chr5_3:68478336-68478355 | None:intergenic | 40.0% | |
| GCTAGTCAAAAGTCCACAAA+AGG | - | chr5_3:68478390-68478409 | Msa0827320:intron | 40.0% | |
| ! | GTCTTCAAGTATGCCTTTTG+TGG | + | chr5_3:68478406-68478425 | None:intergenic | 40.0% |
| CTTGTATCTGATGTCCAGTT+TGG | + | chr5_3:68478526-68478545 | None:intergenic | 40.0% | |
| CAAACTGGACATCAGATACA+AGG | - | chr5_3:68478524-68478543 | Msa0827320:CDS | 40.0% | |
| !! | ATCAGATACAAGGGCATTAG+AGG | - | chr5_3:68478534-68478553 | Msa0827320:CDS | 40.0% |
| TTTGCTTCATCCTTCTAGTG+AGG | - | chr5_3:68478666-68478685 | Msa0827320:CDS | 40.0% | |
| !! | GAGGAAGGACTTACTTTTAG+AGG | - | chr5_3:68478685-68478704 | Msa0827320:CDS | 40.0% |
| GCAAATGGAAAAGGGAAGCT+TGG | - | chr5_3:68475467-68475486 | Msa0827320:CDS | 45.0% | |
| TGGAAAAGGGAAGCTTGGAA+AGG | - | chr5_3:68475472-68475491 | Msa0827320:CDS | 45.0% | |
| GATGATGACATGGGAATTCC+TGG | - | chr5_3:68475575-68475594 | Msa0827320:CDS | 45.0% | |
| ! | CCGCATTTTCTTTGCCAACA+AGG | - | chr5_3:68475733-68475752 | Msa0827320:CDS | 45.0% |
| !! | CTGTAATGGACTAATGGAGC+CGG | + | chr5_3:68475947-68475966 | None:intergenic | 45.0% |
| AACAGGAGAACGCAAAGAGT+GGG | - | chr5_3:68476000-68476019 | Msa0827320:CDS | 45.0% | |
| AATCATGCTCGTCCTGTTCT+TGG | - | chr5_3:68476079-68476098 | Msa0827320:CDS | 45.0% | |
| GAACTGGCAGAAAGCCAAAT+AGG | - | chr5_3:68476137-68476156 | Msa0827320:CDS | 45.0% | |
| GGCAGAAAGCCAAATAGGAA+AGG | - | chr5_3:68476142-68476161 | Msa0827320:CDS | 45.0% | |
| ! | GTTCATGGATTGTATGAGGG+TGG | - | chr5_3:68476476-68476495 | Msa0827320:CDS | 45.0% |
| CTTGAGGAACTGTTCACCAT+CGG | + | chr5_3:68476570-68476589 | None:intergenic | 45.0% | |
| !! | CTTTAGGTGGTGGATACTTG+AGG | + | chr5_3:68476586-68476605 | None:intergenic | 45.0% |
| ! | CCTTGAAGTACTTTAGGTGG+TGG | + | chr5_3:68476596-68476615 | None:intergenic | 45.0% |
| ! | CCACCACCTAAAGTACTTCA+AGG | - | chr5_3:68476593-68476612 | Msa0827320:CDS | 45.0% |
| GAACAGTAAGTAGGTCTGCA+TGG | - | chr5_3:68476734-68476753 | Msa0827320:CDS | 45.0% | |
| !! | TGACTATCTAGCTTGCTTCG+CGG | + | chr5_3:68476982-68477001 | None:intergenic | 45.0% |
| GTCACTGCTCAAGAAAAGGA+TGG | + | chr5_3:68477292-68477311 | None:intergenic | 45.0% | |
| AAACTCAACTCTATGGCCAG+TGG | + | chr5_3:68477327-68477346 | None:intergenic | 45.0% | |
| GTGTGGCAAACTCAACTCTA+TGG | + | chr5_3:68477334-68477353 | None:intergenic | 45.0% | |
| !! | GCTGACAAGTTGATGATAGC+AGG | + | chr5_3:68477466-68477485 | None:intergenic | 45.0% |
| TTAACACCACATGGGGAAGA+TGG | + | chr5_3:68478001-68478020 | None:intergenic | 45.0% | |
| CACAAGCTTAACACCACATG+GGG | + | chr5_3:68478008-68478027 | None:intergenic | 45.0% | |
| CCACAAGCTTAACACCACAT+GGG | + | chr5_3:68478009-68478028 | None:intergenic | 45.0% | |
| ACCACAAGCTTAACACCACA+TGG | + | chr5_3:68478010-68478029 | None:intergenic | 45.0% | |
| ! | TGGTGTTAAGCTTGTGGTAG+AGG | - | chr5_3:68478012-68478031 | Msa0827320:intron | 45.0% |
| ! | TATGGGCTGCCATAAAGACA+TGG | - | chr5_3:68478065-68478084 | Msa0827320:CDS | 45.0% |
| ! | ATGGGCTGCCATAAAGACAT+GGG | - | chr5_3:68478066-68478085 | Msa0827320:CDS | 45.0% |
| GTCTTGGACCCATGTCTTTA+TGG | + | chr5_3:68478077-68478096 | None:intergenic | 45.0% | |
| GTCATCTGTGGTGTAGTACA+AGG | + | chr5_3:68478107-68478126 | None:intergenic | 45.0% | |
| ATTCTGAACTCCAAGCTTGG+TGG | - | chr5_3:68478140-68478159 | Msa0827320:CDS | 45.0% | |
| CAAGTTCTTTCCACCAAGCT+TGG | + | chr5_3:68478153-68478172 | None:intergenic | 45.0% | |
| ! | GAACTTGTAGAGGTTGGTCA+TGG | - | chr5_3:68478166-68478185 | Msa0827320:CDS | 45.0% |
| ATAAGAAAAACGAGCCGTGG+TGG | - | chr5_3:68478191-68478210 | Msa0827320:CDS | 45.0% | |
| TCTTCACGAGCTTGCATCTT+AGG | + | chr5_3:68478217-68478236 | None:intergenic | 45.0% | |
| AGGAGATTCATGCCAGAGAA+AGG | - | chr5_3:68478349-68478368 | Msa0827320:intron | 45.0% | |
| GGAGATTCATGCCAGAGAAA+GGG | - | chr5_3:68478350-68478369 | Msa0827320:intron | 45.0% | |
| TATTCAGCTGACCCTTTCTC+TGG | + | chr5_3:68478364-68478383 | None:intergenic | 45.0% | |
| GCTTCTGATGAAGTGTACCT+TGG | - | chr5_3:68478487-68478506 | Msa0827320:CDS | 45.0% | |
| TTGGATTGTCTCTCTCTCCA+AGG | + | chr5_3:68478507-68478526 | None:intergenic | 45.0% | |
| GAGAGAGAGACAATCCAAAC+TGG | - | chr5_3:68478509-68478528 | Msa0827320:CDS | 45.0% | |
| CTTCATCCTTCTAGTGAGGA+AGG | - | chr5_3:68478670-68478689 | Msa0827320:CDS | 45.0% | |
| GTAAGTCCTTCCTCACTAGA+AGG | + | chr5_3:68478679-68478698 | None:intergenic | 45.0% | |
| GCTTGGAAAGGCTACCTTTC+TGG | - | chr5_3:68475484-68475503 | Msa0827320:CDS | 50.0% | |
| GGAAAGGCTACCTTTCTGGA+AGG | - | chr5_3:68475488-68475507 | Msa0827320:CDS | 50.0% | |
| !! | TGCTCCCAATGTTGGTAACG+AGG | + | chr5_3:68475522-68475541 | None:intergenic | 50.0% |
| TCGTTACCAACATTGGGAGC+AGG | - | chr5_3:68475521-68475540 | Msa0827320:CDS | 50.0% | |
| GATTGTCCTGCTCCCAATGT+TGG | + | chr5_3:68475530-68475549 | None:intergenic | 50.0% | |
| GCGGTCAAGTTTGTGGTGTT+TGG | + | chr5_3:68475717-68475736 | None:intergenic | 50.0% | |
| TCATACACCTGTGTGACACC+TGG | + | chr5_3:68475778-68475797 | None:intergenic | 50.0% | |
| AATGGAGCCGGTGTTTCACT+AGG | + | chr5_3:68475935-68475954 | None:intergenic | 50.0% | |
| GAACAGGAGAACGCAAAGAG+TGG | - | chr5_3:68475999-68476018 | Msa0827320:CDS | 50.0% | |
| GAGAACGCAAAGAGTGGGAA+AGG | - | chr5_3:68476005-68476024 | Msa0827320:CDS | 50.0% | |
| ATGCTCGTCCTGTTCTTGGA+GGG | - | chr5_3:68476083-68476102 | Msa0827320:CDS | 50.0% | |
| TCATCAGACCCTCCAAGAAC+AGG | + | chr5_3:68476094-68476113 | None:intergenic | 50.0% | |
| GGATTTGGGCGACTTCATGA+AGG | - | chr5_3:68476926-68476945 | Msa0827320:CDS | 50.0% | |
| !! | TATCTAGCTTGCTTCGCGGA+GGG | + | chr5_3:68476978-68476997 | None:intergenic | 50.0% |
| AGAAGGGCTCACAGTAGAAG+AGG | - | chr5_3:68477056-68477075 | Msa0827320:intron | 50.0% | |
| CGAGTAGCATAAGCCTTCGT+TGG | + | chr5_3:68477267-68477286 | None:intergenic | 50.0% | |
| TTGAGTTTGCCACACCCTGA+CGG | - | chr5_3:68477339-68477358 | Msa0827320:intron | 50.0% | |
| CACCATGTTCATCTCCGTCA+GGG | + | chr5_3:68477356-68477375 | None:intergenic | 50.0% | |
| GTTTATCAACCCGCGCTAGA+AGG | - | chr5_3:68477387-68477406 | Msa0827320:CDS | 50.0% | |
| ACTGTCAACACCTTCTAGCG+CGG | + | chr5_3:68477400-68477419 | None:intergenic | 50.0% | |
| TTCTCTTGCTCGACAATCCC+TGG | - | chr5_3:68477692-68477711 | Msa0827320:CDS | 50.0% | |
| GATACCTCCATCGTTGACCA+GGG | + | chr5_3:68477712-68477731 | None:intergenic | 50.0% | |
| TGATACCTCCATCGTTGACC+AGG | + | chr5_3:68477713-68477732 | None:intergenic | 50.0% | |
| ! | CCCATGTGGTGTTAAGCTTG+TGG | - | chr5_3:68478006-68478025 | Msa0827320:intron | 50.0% |
| GCGATAAGAAAAACGAGCCG+TGG | - | chr5_3:68478188-68478207 | Msa0827320:CDS | 50.0% | |
| GAGAAGCTAAGACACCGTCT+TGG | - | chr5_3:68478622-68478641 | Msa0827320:CDS | 50.0% | |
| ! | CGTGTAACCAGGTGTCACAC+AGG | - | chr5_3:68475768-68475787 | Msa0827320:CDS | 55.0% |
| CATGCTCGTCCTGTTCTTGG+AGG | - | chr5_3:68476082-68476101 | Msa0827320:CDS | 55.0% | |
| GTTCTCCCCCTACGAGGATA+AGG | + | chr5_3:68476121-68476140 | None:intergenic | 55.0% | |
| TATCCTCGTAGGGGGAGAAC+TGG | - | chr5_3:68476121-68476140 | Msa0827320:CDS | 55.0% | |
| !! | CTATCTAGCTTGCTTCGCGG+AGG | + | chr5_3:68476979-68476998 | None:intergenic | 55.0% |
| TGTTCATCTCCGTCAGGGTG+TGG | + | chr5_3:68477351-68477370 | None:intergenic | 55.0% | |
| CACCCTGACGGAGATGAACA+TGG | - | chr5_3:68477351-68477370 | Msa0827320:intron | 55.0% | |
| GCACCATGTTCATCTCCGTC+AGG | + | chr5_3:68477357-68477376 | None:intergenic | 55.0% | |
| CTGTCAACACCTTCTAGCGC+GGG | + | chr5_3:68477399-68477418 | None:intergenic | 55.0% | |
| CGACAATCCCTGGTCAACGA+TGG | - | chr5_3:68477702-68477721 | Msa0827320:CDS | 55.0% | |
| CAATCCCTGGTCAACGATGG+AGG | - | chr5_3:68477705-68477724 | Msa0827320:CDS | 55.0% | |
| TCAGCAGGCAATGCTTGACC+TGG | + | chr5_3:68477807-68477826 | None:intergenic | 55.0% | |
| GAGGATCCATCTTCCCCATG+TGG | - | chr5_3:68477992-68478011 | Msa0827320:intron | 55.0% | |
| GCTTGCATCTTAGGCCACCA+CGG | + | chr5_3:68478208-68478227 | None:intergenic | 55.0% | |
| GCTAAGACACCGTCTTGGAC+CGG | - | chr5_3:68478627-68478646 | Msa0827320:CDS | 55.0% | |
| GCATCTGAACCGGTCCAAGA+CGG | + | chr5_3:68478639-68478658 | None:intergenic | 55.0% | |
| CTGCCAGTTCTCCCCCTACG+AGG | + | chr5_3:68476127-68476146 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 68475461 | 68478732 | 68475461 | ID=Msa0827320;Name=Msa0827320 |
| chr5_3 | mRNA | 68475461 | 68478732 | 68475461 | ID=Msa0827320-mRNA-1;Parent=Msa0827320;Name=Msa0827320-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0|1|1|1|8|0|791 |
| chr5_3 | exon | 68478439 | 68478732 | 68478439 | ID=Msa0827320-mRNA-1:exon:21504;Parent=Msa0827320-mRNA-1 |
| chr5_3 | exon | 68478030 | 68478270 | 68478030 | ID=Msa0827320-mRNA-1:exon:21503;Parent=Msa0827320-mRNA-1 |
| chr5_3 | exon | 68477579 | 68477902 | 68477579 | ID=Msa0827320-mRNA-1:exon:21502;Parent=Msa0827320-mRNA-1 |
| chr5_3 | exon | 68477368 | 68477453 | 68477368 | ID=Msa0827320-mRNA-1:exon:21501;Parent=Msa0827320-mRNA-1 |
| chr5_3 | exon | 68477116 | 68477223 | 68477116 | ID=Msa0827320-mRNA-1:exon:21500;Parent=Msa0827320-mRNA-1 |
| chr5_3 | exon | 68476703 | 68477007 | 68476703 | ID=Msa0827320-mRNA-1:exon:21499;Parent=Msa0827320-mRNA-1 |
| chr5_3 | exon | 68476355 | 68476618 | 68476355 | ID=Msa0827320-mRNA-1:exon:21498;Parent=Msa0827320-mRNA-1 |
| chr5_3 | exon | 68475461 | 68476214 | 68475461 | ID=Msa0827320-mRNA-1:exon:21497;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68478439 | 68478732 | 68478439 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68478030 | 68478270 | 68478030 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68477579 | 68477902 | 68477579 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68477368 | 68477453 | 68477368 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68477116 | 68477223 | 68477116 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68476703 | 68477007 | 68476703 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68476355 | 68476618 | 68476355 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| chr5_3 | CDS | 68475461 | 68476214 | 68475461 | ID=Msa0827320-mRNA-1:cds;Parent=Msa0827320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
