AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1327690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327690 MtrunA17_Chr8g0365351 92.842 475 11 2 2 464 1 464 0.0 854
Msa1327690 MtrunA17_Chr5g0435221 37.000 300 150 7 144 436 113 380 5.81e-48 170
Msa1327690 MtrunA17_Chr5g0393761 31.830 377 188 11 90 436 20 357 5.89e-45 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327690 AT1G60230.1 69.492 413 96 2 52 460 71 457 0.0 596
Msa1327690 AT3G19630.1 34.667 375 185 13 83 436 13 348 8.99e-53 182
Msa1327690 AT2G39670.2 34.884 301 156 7 144 436 136 404 3.62e-40 149
Msa1327690 AT2G39670.1 34.884 301 156 7 144 436 133 401 3.79e-40 149

Find 133 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCACCAATGTTGTATTTA+TGG 0.082393 8_4:-45054772 Msa1327690:intron
TTAAACATAACGCCCCTTTC+TGG 0.203318 8_4:+45051164 None:intergenic
GTAAGCAAATTTAGAGATTT+AGG 0.216370 8_4:-45057223 Msa1327690:five_prime_UTR
AGTTTATACTTTCGATTTAT+AGG 0.229974 8_4:+45053637 None:intergenic
TTTATATTTGATTAAATATT+GGG 0.234970 8_4:-45051116 Msa1327690:three_prime_UTR
AAAGCTGAGGGGCGCAAATA+TGG 0.236560 8_4:+45051260 None:intergenic
TTCCTTCAAACATAAATATA+AGG 0.257503 8_4:-45053581 Msa1327690:CDS
CGCCTCTACTCGGTCTTAAA+AGG 0.259812 8_4:+45051542 None:intergenic
CGGTTGTTCACAAGTGAAAT+TGG 0.279164 8_4:-45054798 Msa1327690:CDS
ATGAAGTCATATGTGTCTTA+TGG 0.286698 8_4:+45051362 None:intergenic
AGTTCAACGTGTTCTTTATA+AGG 0.302888 8_4:-45051424 Msa1327690:exon
CATTAAAGCTGCAGATATTA+TGG 0.311841 8_4:-45053925 Msa1327690:CDS
AATAAGAAACGGCGAGGTTT+TGG 0.315022 8_4:+45057081 None:intergenic
GGTGAGAGAAAAGGGGATAA+TGG 0.342803 8_4:+45057102 None:intergenic
TGTTTAATTATTATTTGTAT+TGG 0.343253 8_4:-45051148 Msa1327690:three_prime_UTR
CTGCCTCAGCTAGCATATTT+CGG 0.348127 8_4:+45051575 None:intergenic
AACCTTATATTTATGTTTGA+AGG 0.351732 8_4:+45053579 None:intergenic
ATAGCAAAATTGACAATTCA+TGG 0.376305 8_4:+45054980 None:intergenic
TATAAATCGAAAGTATAAAC+TGG 0.379792 8_4:-45053635 Msa1327690:CDS
ACTTGGTAAATAAACACATT+AGG 0.384851 8_4:+45051022 None:intergenic
GTGTGGTCAGTGGAGATAGA+AGG 0.393173 8_4:+45057013 None:intergenic
TTGAACTTCCAACCGCCATT+TGG 0.395896 8_4:+45051440 None:intergenic
CTCTTTCGTTGGTCTGAAGA+AGG 0.400964 8_4:+45051615 None:intergenic
GTATGTATGGAAACAACATT+TGG 0.405648 8_4:-45055664 Msa1327690:CDS
ATCATCCTTTCCTCTTTCGT+TGG 0.411585 8_4:+45051604 None:intergenic
TATTATGTCAGGTAAGAAAC+TGG 0.414794 8_4:-45053666 Msa1327690:intron
GTTGTCATACCTTGTGATAC+AGG 0.415659 8_4:-45055041 Msa1327690:CDS
GGTTGAAACAGTGACCTTGC+GGG 0.428851 8_4:+45053875 None:intergenic
TTTGAGTATGTGATGCTTGA+AGG 0.435255 8_4:-45053553 Msa1327690:CDS
AAGTGAGAATGATGAGGAAT+TGG 0.438578 8_4:-45057186 Msa1327690:exon
ACCTTCAACTTCTCTCATTC+CGG 0.442689 8_4:-45056992 Msa1327690:intron
CAGGGCAGGCCATGATGTTA+TGG 0.443537 8_4:-45055691 Msa1327690:CDS
GAGTGAACATGCAGATTTCA+AGG 0.446259 8_4:-45055365 Msa1327690:CDS
AAGCTGAGGGGCGCAAATAT+GGG 0.447784 8_4:+45051261 None:intergenic
GGGTTCAATCACATGGATAC+AGG 0.452369 8_4:-45055715 Msa1327690:CDS
TTGCATGAAATAACCAGAAA+GGG 0.458171 8_4:-45051177 Msa1327690:three_prime_UTR
CGAAATATGCTAGCTGAGGC+AGG 0.465809 8_4:-45051574 Msa1327690:CDS
GAAGTTGAAGGTGTGGTCAG+TGG 0.472863 8_4:+45057003 None:intergenic
TGTGGTCAGTTAGGCAAGCC+TGG 0.474246 8_4:-45051502 Msa1327690:CDS
CATAACATCATGGCCTGCCC+TGG 0.475218 8_4:+45055692 None:intergenic
ATACATTTATTATAGGGCAT+GGG 0.477307 8_4:-45053975 Msa1327690:intron
ATTCACTTTGGATGATGGGC+TGG 0.481103 8_4:-45055075 Msa1327690:CDS
CACGTAGCATTGGAGCTTGA+AGG 0.481182 8_4:+45051476 None:intergenic
AGGCTAATCGAGCTTGTAAA+GGG 0.484951 8_4:-45051685 Msa1327690:CDS
GAGATTAGATTGATCTTGCA+AGG 0.488380 8_4:+45051658 None:intergenic
ATTGGAGCTTGAAGGGTGCC+AGG 0.488410 8_4:+45051484 None:intergenic
TTTGCATGAAATAACCAGAA+AGG 0.488688 8_4:-45051178 Msa1327690:three_prime_UTR
CAATCACATGGATACAGGCC+AGG 0.493860 8_4:-45055710 Msa1327690:CDS
TGCCGCAGAAATAGTTGAGC+AGG 0.495361 8_4:-45054835 Msa1327690:CDS
CATAAATACAACATTGGTGA+TGG 0.505817 8_4:+45054773 None:intergenic
TTCAAATTCCTGAAGTTGGT+GGG 0.508099 8_4:-45051203 Msa1327690:three_prime_UTR
ATGGCTGCATGTGGTCAGTT+AGG 0.512293 8_4:-45051511 Msa1327690:CDS
ATCTCATTCAATCCACATAG+TGG 0.516285 8_4:-45051640 Msa1327690:CDS
GAGGCTAATCGAGCTTGTAA+AGG 0.517029 8_4:-45051686 Msa1327690:CDS
TGCTGTGGTACACGTAGCAT+TGG 0.517770 8_4:+45051466 None:intergenic
CTTCTTCAGACCAACGAAAG+AGG 0.518641 8_4:-45051614 Msa1327690:CDS
AAGGAAGCGACGAGAGGGAG+TGG 0.518927 8_4:+45057051 None:intergenic
GAAATTCACGCAGCGTCTGA+TGG 0.519186 8_4:-45055328 Msa1327690:CDS
AGGGTTCAAATTCCTGAAGT+TGG 0.522322 8_4:-45051207 Msa1327690:three_prime_UTR
GGCGCATCATACTGACGAGT+TGG 0.522854 8_4:-45055642 Msa1327690:CDS
ATGTTATGGAAACGTATGTA+TGG 0.524997 8_4:-45055677 Msa1327690:CDS
TACATTTATTATAGGGCATG+GGG 0.525090 8_4:-45053974 Msa1327690:intron
TATGTATGGAAACAACATTT+GGG 0.525882 8_4:-45055663 Msa1327690:CDS
CATGGCACATCCAACTTGAC+TGG 0.526270 8_4:+45054998 None:intergenic
TCAACTAATTATAAAGCTGA+GGG 0.527662 8_4:+45051248 None:intergenic
ATCTGATCATCGCCTCTACT+CGG 0.529771 8_4:+45051532 None:intergenic
ACGCAGCGTCTGATGGAACT+AGG 0.540029 8_4:-45055321 Msa1327690:CDS
ATCAACTAATTATAAAGCTG+AGG 0.542115 8_4:+45051247 None:intergenic
GTTCAAATTCCTGAAGTTGG+TGG 0.543206 8_4:-45051204 Msa1327690:three_prime_UTR
GCAGAAAGGAAGCGACGAGA+GGG 0.550238 8_4:+45057046 None:intergenic
ACTAACAGCTAATGTACAGT+TGG 0.552421 8_4:+45053812 None:intergenic
CAGAAATGGGTTCAATCACA+TGG 0.552818 8_4:-45055722 Msa1327690:CDS
GATGAAAACTTGCTTAGACT+TGG 0.555467 8_4:+45051005 None:intergenic
AAGAAGAAATGTTGTGGAGG+AGG 0.555699 8_4:+45057132 None:intergenic
TGCTTGAAGGAATTAATGAC+AGG 0.555853 8_4:-45053540 Msa1327690:intron
AAGGAAGAGATGAAGCAGAA+AGG 0.559342 8_4:+45057032 None:intergenic
CAGCAATTCCAAATGGCGGT+TGG 0.563127 8_4:-45051448 Msa1327690:CDS
ACGTAGCATTGGAGCTTGAA+GGG 0.566712 8_4:+45051477 None:intergenic
GTCTATAATGATCGATTCAG+TGG 0.568088 8_4:-45054934 Msa1327690:CDS
GAGCTGCGGAACAAGCCCAC+TGG 0.568308 8_4:+45053854 None:intergenic
TGTACCACAGCAATTCCAAA+TGG 0.569297 8_4:-45051455 Msa1327690:CDS
TCAACGTGTTCTTTATAAGG+AGG 0.570039 8_4:-45051421 Msa1327690:exon
AGTGTTGCAGTTTCGAGTCG+AGG 0.572617 8_4:-45056878 Msa1327690:CDS
ACATTATCAATGTTATGAAG+AGG 0.573258 8_4:+45053948 None:intergenic
ACCTACCATAAATACAACAT+TGG 0.573449 8_4:+45054767 None:intergenic
CATACGTTTCCATAACATCA+TGG 0.574899 8_4:+45055682 None:intergenic
GAGTAGAGGCGATGATCAGA+TGG 0.574917 8_4:-45051530 Msa1327690:CDS
GATATTATGGTGCATGACCA+AGG 0.575495 8_4:-45053912 Msa1327690:CDS
AAATATTGGGAAAAGTCATG+TGG 0.577458 8_4:-45051103 Msa1327690:three_prime_UTR
GTTGAAACAGTGACCTTGCG+GGG 0.578352 8_4:+45053876 None:intergenic
GTGGTAAAAGAAATAAGAAA+CGG 0.583978 8_4:+45057070 None:intergenic
AAGGTCACTGTTTCAACCAG+TGG 0.584017 8_4:-45053870 Msa1327690:CDS
AATATTGGGAAAAGTCATGT+GGG 0.586694 8_4:-45051102 Msa1327690:three_prime_UTR
CATCATACTGACGAGTTGGA+AGG 0.594610 8_4:-45055638 Msa1327690:intron
TCATACCTTGTGATACAGGC+AGG 0.599188 8_4:-45055037 Msa1327690:CDS
ACATGGATACAGGCCAGGGC+AGG 0.600931 8_4:-45055705 Msa1327690:CDS
TGGTTGAAACAGTGACCTTG+CGG 0.602843 8_4:+45053874 None:intergenic
CTGAAGAAGGATCCACTATG+TGG 0.603142 8_4:+45051628 None:intergenic
AGGTCACTGTTTCAACCAGT+GGG 0.603599 8_4:-45053869 Msa1327690:CDS
TTTGAATGCAACTACTGATG+AGG 0.604395 8_4:-45053790 Msa1327690:intron
AGCAGAAAGGAAGCGACGAG+AGG 0.607108 8_4:+45057045 None:intergenic
AGATTAGATTGATCTTGCAA+GGG 0.609560 8_4:+45051659 None:intergenic
TGCATGAAATAACCAGAAAG+GGG 0.614254 8_4:-45051176 Msa1327690:three_prime_UTR
ACCGCCATTTGGAATTGCTG+TGG 0.616173 8_4:+45051451 None:intergenic
ATGTACAGTTGGATTCATGA+AGG 0.616726 8_4:+45053823 None:intergenic
ACATGCAATAAAAGTAAAGA+CGG 0.621862 8_4:+45054906 None:intergenic
TTTGTGAAGAAGAAATGTTG+TGG 0.622791 8_4:+45057126 None:intergenic
AGCGTCTGATGGAACTAGGA+AGG 0.622960 8_4:-45055317 Msa1327690:intron
AATCACATGGATACAGGCCA+GGG 0.624605 8_4:-45055709 Msa1327690:CDS
GTGAAGAAGAAATGTTGTGG+AGG 0.625709 8_4:+45057129 None:intergenic
GCTTCTTGAGACACTTCGTG+AGG 0.629024 8_4:-45053608 Msa1327690:CDS
ACCGGAATGAGAGAAGTTGA+AGG 0.629596 8_4:+45056991 None:intergenic
TCAGACCAACGAAAGAGGAA+AGG 0.631199 8_4:-45051609 Msa1327690:CDS
GTCATGTGGGAAAAGTCATG+TGG 0.632967 8_4:-45051089 Msa1327690:three_prime_UTR
ATATTATGGTGCATGACCAA+GGG 0.636487 8_4:-45053911 Msa1327690:CDS
AATGAGAGAAGTTGAAGGTG+TGG 0.642223 8_4:+45056996 None:intergenic
TGAAGGAAACGTCTGAGCTG+CGG 0.644113 8_4:+45053840 None:intergenic
GCAGCAATGAAGATGCAAAG+AGG 0.659018 8_4:-45051705 Msa1327690:intron
TTGAAACAGTGACCTTGCGG+GGG 0.661137 8_4:+45053877 None:intergenic
GATGAGGAATTGGATGAGCA+TGG 0.664063 8_4:-45057176 Msa1327690:CDS
AGCCTGCTCAACTATTTCTG+CGG 0.666032 8_4:+45054833 None:intergenic
GTGTGCGTTTCCAGTCAAGT+TGG 0.670462 8_4:-45055008 Msa1327690:CDS
ATTCCGAAATATGCTAGCTG+AGG 0.675146 8_4:-45051578 Msa1327690:CDS
GTAGTCCTGCCTGTATCACA+AGG 0.677322 8_4:+45055032 None:intergenic
AAAAGAAATAAGAAACGGCG+AGG 0.679935 8_4:+45057075 None:intergenic
ACCACAGCAATTCCAAATGG+CGG 0.686804 8_4:-45051452 Msa1327690:CDS
ATGGAATGAAGTGTCCGTGG+TGG 0.692468 8_4:-45051327 Msa1327690:three_prime_UTR
CAACTAATTATAAAGCTGAG+GGG 0.700386 8_4:+45051249 None:intergenic
ACATTTATTATAGGGCATGG+GGG 0.705338 8_4:-45053973 Msa1327690:intron
GGGATGGAATGAAGTGTCCG+TGG 0.707468 8_4:-45051330 Msa1327690:three_prime_UTR
GATGATCAGATGGCTGCATG+TGG 0.725456 8_4:-45051520 Msa1327690:CDS
TCTCAGTATTCTGTCCACCA+CGG 0.738491 8_4:+45051313 None:intergenic
GCAATGAAGTGAGAATGATG+AGG 0.740035 8_4:-45057192 Msa1327690:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGATTAATTTTTTAATTT+AGG - chr8_4:45051507-45051526 Msa1327690:CDS 10.0%
!!! ATTAATTTTTTAATTTAGGT+AGG - chr8_4:45051511-45051530 Msa1327690:CDS 10.0%
!!! CAAAAATAATTTAACTTTAT+TGG - chr8_4:45051695-45051714 Msa1327690:CDS 10.0%
!!! ACACATTTAATTTTATATTT+AGG - chr8_4:45052356-45052375 Msa1327690:intron 10.0%
!!! TAATTATGAATTTTAAACTT+TGG - chr8_4:45052748-45052767 Msa1327690:intron 10.0%
!! TATATATAATATAAGTTTAG+AGG - chr8_4:45056247-45056266 Msa1327690:intron 10.0%
!! TGTTTAATTATTATTTGTAT+TGG - chr8_4:45057079-45057098 Msa1327690:CDS 10.0%
!!! TTATTTATTTTGTTTCATTC+AGG - chr8_4:45051316-45051335 Msa1327690:three_prime_UTR 15.0%
!! CAAATTAATAGTATTAGTAA+AGG - chr8_4:45051954-45051973 Msa1327690:intron 15.0%
!! ATTTGAATGATGTTATATTT+AGG - chr8_4:45052046-45052065 Msa1327690:intron 15.0%
!! TTTGAATGATGTTATATTTA+GGG - chr8_4:45052047-45052066 Msa1327690:intron 15.0%
!! ATAAGTTATTTAAACTTACA+GGG + chr8_4:45053789-45053808 None:intergenic 15.0%
!! TATAAGTTATTTAAACTTAC+AGG + chr8_4:45053790-45053809 None:intergenic 15.0%
!! AAGTTTAAATAACTTATACA+AGG - chr8_4:45053792-45053811 Msa1327690:CDS 15.0%
!! TTATAGGTATTATGTATATA+TGG + chr8_4:45054879-45054898 None:intergenic 15.0%
!! AAATGTGTTGAATAATAAAA+GGG + chr8_4:45055427-45055446 None:intergenic 15.0%
!! AAAATGTGTTGAATAATAAA+AGG + chr8_4:45055428-45055447 None:intergenic 15.0%
!! AAATAAATCATAATGGTATT+GGG + chr8_4:45055515-45055534 None:intergenic 15.0%
!! AAAATAAATCATAATGGTAT+TGG + chr8_4:45055516-45055535 None:intergenic 15.0%
!! GAAACTAAAATAAATCATAA+TGG + chr8_4:45055522-45055541 None:intergenic 15.0%
!! TAAAACTACACATATTATAT+GGG - chr8_4:45055763-45055782 Msa1327690:intron 15.0%
!!! TTTAGCTTATATATTTGCAT+AGG - chr8_4:45051553-45051572 Msa1327690:CDS 20.0%
!!! TACACATAAAAGAGTATTTT+AGG + chr8_4:45051896-45051915 None:intergenic 20.0%
!! AATTTCTATAAACGTGAATT+AGG + chr8_4:45052174-45052193 None:intergenic 20.0%
!! AATTAGAAACAAATTAGAGA+AGG + chr8_4:45052946-45052965 None:intergenic 20.0%
!!! ACTTGATGACATTTATATTT+CGG - chr8_4:45053024-45053043 Msa1327690:intron 20.0%
!! ACTTGTTTAATTGATAAACT+AGG - chr8_4:45053626-45053645 Msa1327690:CDS 20.0%
!! ATTTAAACGTATAGCTAAAA+AGG + chr8_4:45053904-45053923 None:intergenic 20.0%
!! AGTTGCTATACATTTATTAT+AGG - chr8_4:45054245-45054264 Msa1327690:intron 20.0%
!! GTTGCTATACATTTATTATA+GGG - chr8_4:45054246-45054265 Msa1327690:intron 20.0%
!!! ATTTCTTTATTGCTATTTGT+TGG - chr8_4:45054468-45054487 Msa1327690:intron 20.0%
!! AGTTTATACTTTCGATTTAT+AGG + chr8_4:45054593-45054612 None:intergenic 20.0%
!!! TATAAATCGAAAGTATAAAC+TGG - chr8_4:45054592-45054611 Msa1327690:intron 20.0%
!! TTCCTTCAAACATAAATATA+AGG - chr8_4:45054646-45054665 Msa1327690:intron 20.0%
!! AACCTTATATTTATGTTTGA+AGG + chr8_4:45054651-45054670 None:intergenic 20.0%
!! CACAAGATAAAGATTATTAT+AGG + chr8_4:45054895-45054914 None:intergenic 20.0%
!!! ATTGTGTAAGTGTTTAAAAT+TGG - chr8_4:45055061-45055080 Msa1327690:CDS 20.0%
!!! TTGTGTAAGTGTTTAAAATT+GGG - chr8_4:45055062-45055081 Msa1327690:CDS 20.0%
!!! ATAATATGTGTAGTTTTACA+TGG + chr8_4:45055761-45055780 None:intergenic 20.0%
!! GTAAAACTACACATATTATA+TGG - chr8_4:45055762-45055781 Msa1327690:intron 20.0%
!! TTTGAAAAAGACATACAATT+GGG - chr8_4:45055909-45055928 Msa1327690:intron 20.0%
!! AGAACCAAGATAAAATAAAA+GGG + chr8_4:45056065-45056084 None:intergenic 20.0%
!! AAATAAAGAAGTTAGAGATA+GGG - chr8_4:45056175-45056194 Msa1327690:intron 20.0%
!!! GTTGATTAATTTTATAAACG+TGG - chr8_4:45056997-45057016 Msa1327690:CDS 20.0%
!!! ATTAATTTTATAAACGTGGA+GGG - chr8_4:45057001-45057020 Msa1327690:CDS 20.0%
!!! ACAATTTTTGACAAAAACTT+TGG + chr8_4:45057184-45057203 None:intergenic 20.0%
! GTAAGCAAATTTAGAGATTT+AGG - chr8_4:45051004-45051023 Msa1327690:three_prime_UTR 25.0%
! GTGGTAAAAGAAATAAGAAA+CGG + chr8_4:45051160-45051179 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr8_4:45051785-45051804 Msa1327690:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - chr8_4:45051786-45051805 Msa1327690:intron 25.0%
! TGTAGATGTAGAAAAATAGA+TGG - chr8_4:45051825-45051844 Msa1327690:intron 25.0%
!! ATTTGCATATGGATTTTGTA+TGG - chr8_4:45051865-45051884 Msa1327690:intron 25.0%
! GTATTAGTAAAGGATATTTG+AGG - chr8_4:45051964-45051983 Msa1327690:intron 25.0%
! AAGAATCTTGAGTACATATA+AGG + chr8_4:45052216-45052235 None:intergenic 25.0%
!!! CTGTTTTTTGTTTCTTACTT+TGG - chr8_4:45052390-45052409 Msa1327690:intron 25.0%
! TATGTATGGAAACAACATTT+GGG - chr8_4:45052564-45052583 Msa1327690:intron 25.0%
! TTATACACTTAGCATCTATT+AGG - chr8_4:45052970-45052989 Msa1327690:intron 25.0%
!! ATTGCAGATTTTATTCACTT+TGG - chr8_4:45053140-45053159 Msa1327690:intron 25.0%
!! ATTTTATTCACTTTGGATGA+TGG - chr8_4:45053147-45053166 Msa1327690:intron 25.0%
!! TTTTATTCACTTTGGATGAT+GGG - chr8_4:45053148-45053167 Msa1327690:intron 25.0%
! ATAGCAAAATTGACAATTCA+TGG + chr8_4:45053250-45053269 None:intergenic 25.0%
!!! AATTGTCAATTTTGCTATAC+AGG - chr8_4:45053252-45053271 Msa1327690:intron 25.0%
! GATCATTATAGACAGAAAAA+AGG + chr8_4:45053286-45053305 None:intergenic 25.0%
! ACATGCAATAAAAGTAAAGA+CGG + chr8_4:45053324-45053343 None:intergenic 25.0%
!! TTCAATGTAATTTTGCAGAA+TGG - chr8_4:45053350-45053369 Msa1327690:intron 25.0%
!! TCAATGTAATTTTGCAGAAT+GGG - chr8_4:45053351-45053370 Msa1327690:intron 25.0%
! CTGTTTATAAGGATGAAAAT+AGG - chr8_4:45053559-45053578 Msa1327690:CDS 25.0%
!! TAAAAGAATTTTTGAATGGC+CGG + chr8_4:45053695-45053714 None:intergenic 25.0%
!! CACCTAAAAGAATTTTTGAA+TGG + chr8_4:45053699-45053718 None:intergenic 25.0%
!! GTTTAAAACATGTCTTAGTT+GGG - chr8_4:45053869-45053888 Msa1327690:CDS 25.0%
!! TTTAAAACATGTCTTAGTTG+GGG - chr8_4:45053870-45053889 Msa1327690:CDS 25.0%
! ATAAAATTGAACTACATGTG+TGG - chr8_4:45054035-45054054 Msa1327690:intron 25.0%
! TATACATTTATTATAGGGCA+TGG - chr8_4:45054251-45054270 Msa1327690:intron 25.0%
! ATACATTTATTATAGGGCAT+GGG - chr8_4:45054252-45054271 Msa1327690:intron 25.0%
! ACATTATCAATGTTATGAAG+AGG + chr8_4:45054282-45054301 None:intergenic 25.0%
! CTGAAACATAATCTTATCTT+TGG + chr8_4:45054800-45054819 None:intergenic 25.0%
! ATAAGATTATGTTTCAGTTG+AGG - chr8_4:45054803-45054822 Msa1327690:CDS 25.0%
! TCCATGCAAAATTTACAAAA+AGG - chr8_4:45054838-45054857 Msa1327690:CDS 25.0%
!! TCCTTTTTGTAAATTTTGCA+TGG + chr8_4:45054842-45054861 None:intergenic 25.0%
! GTTTATTAAGAGCTTATTTG+AGG - chr8_4:45055013-45055032 Msa1327690:CDS 25.0%
!! TTTTGTCGTAAAAATTGGAA+TGG - chr8_4:45055086-45055105 Msa1327690:intron 25.0%
! CAATCTAATCTTGAATTCTT+AGG + chr8_4:45055203-45055222 None:intergenic 25.0%
! ATACCTAAGAATTCAGTTAT+AGG - chr8_4:45055235-45055254 Msa1327690:intron 25.0%
! TACCTAAGAATTCAGTTATA+GGG - chr8_4:45055236-45055255 Msa1327690:intron 25.0%
! ATAAAAAACTCAACTAGATC+TGG - chr8_4:45055278-45055297 Msa1327690:intron 25.0%
! TAAAAAACTCAACTAGATCT+GGG - chr8_4:45055279-45055298 Msa1327690:intron 25.0%
!!! CTCTTTTATTGAGGTATTTT+AGG + chr8_4:45055551-45055570 None:intergenic 25.0%
! CTAAAATACCTCAATAAAAG+AGG - chr8_4:45055549-45055568 Msa1327690:intron 25.0%
! GTTTGAAAAAGACATACAAT+TGG - chr8_4:45055908-45055927 Msa1327690:intron 25.0%
!! GATAAAATAAAAGGGCTTTT+AGG + chr8_4:45056057-45056076 None:intergenic 25.0%
!!! AAAGCCCTTTTATTTTATCT+TGG - chr8_4:45056058-45056077 Msa1327690:intron 25.0%
! CAGAACCAAGATAAAATAAA+AGG + chr8_4:45056066-45056085 None:intergenic 25.0%
!!! CTTTTATTTTATCTTGGTTC+TGG - chr8_4:45056064-45056083 Msa1327690:intron 25.0%
! TCACAAAAAATATTTGTGTC+TGG - chr8_4:45056119-45056138 Msa1327690:intron 25.0%
! GAAATAAAGAAGTTAGAGAT+AGG - chr8_4:45056174-45056193 Msa1327690:intron 25.0%
! AATAAAGAAGTTAGAGATAG+GGG - chr8_4:45056176-45056195 Msa1327690:intron 25.0%
! TTATGGTATGAACTACAATA+AGG + chr8_4:45056385-45056404 None:intergenic 25.0%
!! ATATGACTTCATTTTGAATC+TGG - chr8_4:45056876-45056895 Msa1327690:CDS 25.0%
!! TATGACTTCATTTTGAATCT+GGG - chr8_4:45056877-45056896 Msa1327690:CDS 25.0%
! TCAACTAATTATAAAGCTGA+GGG + chr8_4:45056982-45057001 None:intergenic 25.0%
! ATCAACTAATTATAAAGCTG+AGG + chr8_4:45056983-45057002 None:intergenic 25.0%
!! GATTAATTTTATAAACGTGG+AGG - chr8_4:45057000-45057019 Msa1327690:CDS 25.0%
! ACTTGGTAAATAAACACATT+AGG + chr8_4:45057208-45057227 None:intergenic 25.0%
TTTGTGAAGAAGAAATGTTG+TGG + chr8_4:45051104-45051123 None:intergenic 30.0%
!! ATTTTGTTTCATTCAGGAGA+TGG - chr8_4:45051322-45051341 Msa1327690:three_prime_UTR 30.0%
!! GTTCAAAAGTGCTTCTTAAA+GGG - chr8_4:45051371-45051390 Msa1327690:three_prime_UTR 30.0%
TTAATTTAGGTAGGCATGAT+TGG - chr8_4:45051520-45051539 Msa1327690:CDS 30.0%
ATAGGTTCTATGAGATTGTT+TGG - chr8_4:45051571-45051590 Msa1327690:CDS 30.0%
CAGCTTATGACATTGTTTAT+AGG - chr8_4:45051609-45051628 Msa1327690:CDS 30.0%
TAGAAATTCATCATCTAGTG+AGG - chr8_4:45052186-45052205 Msa1327690:intron 30.0%
CAAAAATAGGAGTCAAAAAG+TGG + chr8_4:45052472-45052491 None:intergenic 30.0%
!!! CTTTTTGACTCCTATTTTTG+TGG - chr8_4:45052472-45052491 Msa1327690:intron 30.0%
TATCCATTGACCACAAAAAT+AGG + chr8_4:45052485-45052504 None:intergenic 30.0%
ATGTTATGGAAACGTATGTA+TGG - chr8_4:45052550-45052569 Msa1327690:intron 30.0%
GTATGTATGGAAACAACATT+TGG - chr8_4:45052563-45052582 Msa1327690:intron 30.0%
TGTTCATTATACTCAAGAGA+AGG + chr8_4:45052726-45052745 None:intergenic 30.0%
!! TTATTTCTGTCTCCTGATTT+AGG - chr8_4:45052812-45052831 Msa1327690:intron 30.0%
TCTTTGTTCAAACCTAAATC+AGG + chr8_4:45052827-45052846 None:intergenic 30.0%
CATAAATACAACATTGGTGA+TGG + chr8_4:45053457-45053476 None:intergenic 30.0%
CATCACCAATGTTGTATTTA+TGG - chr8_4:45053455-45053474 Msa1327690:intron 30.0%
ACCAATGTTGTATTTATGGT+AGG - chr8_4:45053459-45053478 Msa1327690:intron 30.0%
ACCTACCATAAATACAACAT+TGG + chr8_4:45053463-45053482 None:intergenic 30.0%
TTCATCCTTATAAACAGAAG+TGG + chr8_4:45053556-45053575 None:intergenic 30.0%
! GGCCATTCAAAAATTCTTTT+AGG - chr8_4:45053694-45053713 Msa1327690:intron 30.0%
AGCTACAAGTTATAAGTTCT+AGG + chr8_4:45053845-45053864 None:intergenic 30.0%
! CGTTTAAAACATGTCTTAGT+TGG - chr8_4:45053868-45053887 Msa1327690:CDS 30.0%
TTGATTAGAACATGTAGAAG+AGG - chr8_4:45054075-45054094 Msa1327690:intron 30.0%
! TTTTCTCCTTTACATTGCAT+TGG - chr8_4:45054189-45054208 Msa1327690:intron 30.0%
TACATTTATTATAGGGCATG+GGG - chr8_4:45054253-45054272 Msa1327690:intron 30.0%
CATTAAAGCTGCAGATATTA+TGG - chr8_4:45054302-45054321 Msa1327690:intron 30.0%
ACACTAACATCTATTATGTC+AGG - chr8_4:45054550-45054569 Msa1327690:intron 30.0%
TATTATGTCAGGTAAGAAAC+TGG - chr8_4:45054561-45054580 Msa1327690:intron 30.0%
! TGGGTTTTTGTCGTAAAAAT+TGG - chr8_4:45055081-45055100 Msa1327690:CDS 30.0%
GAATAATAAAAGGGAGTGAA+TGG + chr8_4:45055418-45055437 None:intergenic 30.0%
CATCTTTGTTCTTATAGATG+GGG + chr8_4:45055738-45055757 None:intergenic 30.0%
GCATCTTTGTTCTTATAGAT+GGG + chr8_4:45055739-45055758 None:intergenic 30.0%
!! TACCTGTTTTTCCTTTATCA+TGG + chr8_4:45055888-45055907 None:intergenic 30.0%
!!! TAAGCAATTTTTTCTCTCTC+CGG + chr8_4:45055961-45055980 None:intergenic 30.0%
AGCAAGCAAATATATGAACA+AGG - chr8_4:45055986-45056005 Msa1327690:intron 30.0%
GCAAGCAAATATATGAACAA+GGG - chr8_4:45055987-45056006 Msa1327690:intron 30.0%
CAAGCAAATATATGAACAAG+GGG - chr8_4:45055988-45056007 Msa1327690:intron 30.0%
AAGCAAATATATGAACAAGG+GGG - chr8_4:45055989-45056008 Msa1327690:intron 30.0%
TTTGTGTCTGGATGATATAT+TGG - chr8_4:45056131-45056150 Msa1327690:intron 30.0%
CTGGATGATATATTGGTATT+TGG - chr8_4:45056138-45056157 Msa1327690:intron 30.0%
ATAAAGAAGTTAGAGATAGG+GGG - chr8_4:45056177-45056196 Msa1327690:intron 30.0%
! AAAAAACCACTGCGTATTTT+GGG + chr8_4:45056324-45056343 None:intergenic 30.0%
! TAAAAAACCACTGCGTATTT+TGG + chr8_4:45056325-45056344 None:intergenic 30.0%
AGAAAGAATTGCAAGCATTA+TGG + chr8_4:45056402-45056421 None:intergenic 30.0%
ATTCCATGTCATATAAGACT+TGG - chr8_4:45056440-45056459 Msa1327690:intron 30.0%
AGATTAGATTGATCTTGCAA+GGG + chr8_4:45056571-45056590 None:intergenic 30.0%
AGTTCAACGTGTTCTTTATA+AGG - chr8_4:45056803-45056822 Msa1327690:intron 30.0%
ATGAAGTCATATGTGTCTTA+TGG + chr8_4:45056868-45056887 None:intergenic 30.0%
CAACTAATTATAAAGCTGAG+GGG + chr8_4:45056981-45057000 None:intergenic 30.0%
TTTGCATGAAATAACCAGAA+AGG - chr8_4:45057049-45057068 Msa1327690:CDS 30.0%
TTGCATGAAATAACCAGAAA+GGG - chr8_4:45057050-45057069 Msa1327690:CDS 30.0%
AAATATTGGGAAAAGTCATG+TGG - chr8_4:45057124-45057143 Msa1327690:CDS 30.0%
AATATTGGGAAAAGTCATGT+GGG - chr8_4:45057125-45057144 Msa1327690:CDS 30.0%
AAGTGAGAATGATGAGGAAT+TGG - chr8_4:45051041-45051060 Msa1327690:three_prime_UTR 35.0%
AAAAGAAATAAGAAACGGCG+AGG + chr8_4:45051155-45051174 None:intergenic 35.0%
!! AAGATGGATTGAAGAGTTAC+CGG + chr8_4:45051257-45051276 None:intergenic 35.0%
!! GGTTCAAAAGTGCTTCTTAA+AGG - chr8_4:45051370-45051389 Msa1327690:three_prime_UTR 35.0%
! TGATGTGTTCGATTTGCATA+TGG - chr8_4:45051854-45051873 Msa1327690:intron 35.0%
GTATTGTGTATTAAGCAGCT+CGG - chr8_4:45052119-45052138 Msa1327690:intron 35.0%
!!! ACTCCTATTTTTGTGGTCAA+TGG - chr8_4:45052479-45052498 Msa1327690:intron 35.0%
TGGTCAATGGATACAGAAAT+GGG - chr8_4:45052492-45052511 Msa1327690:intron 35.0%
CATACGTTTCCATAACATCA+TGG + chr8_4:45052548-45052567 None:intergenic 35.0%
TGACACACTCAAATACATGA+AGG + chr8_4:45052626-45052645 None:intergenic 35.0%
TCTAGTGTTACATGCAACAT+TGG - chr8_4:45052996-45053015 Msa1327690:intron 35.0%
!! GTCAATTTTGCTATACAGGA+AGG - chr8_4:45053256-45053275 Msa1327690:intron 35.0%
! GTCTATAATGATCGATTCAG+TGG - chr8_4:45053293-45053312 Msa1327690:intron 35.0%
! AGATGCCACTTCTGTTTATA+AGG - chr8_4:45053548-45053567 Msa1327690:CDS 35.0%
!!! TTTTTTCATCCAGAGTTGAG+TGG - chr8_4:45053762-45053781 Msa1327690:intron 35.0%
!! CAAGTTATAAGTTCTAGGCT+AGG + chr8_4:45053840-45053859 None:intergenic 35.0%
AGTATGTTGTGTACACTCAA+GGG + chr8_4:45053930-45053949 None:intergenic 35.0%
TAGTATGTTGTGTACACTCA+AGG + chr8_4:45053931-45053950 None:intergenic 35.0%
ACATACTATTCTAGACTTCG+AGG - chr8_4:45053943-45053962 Msa1327690:CDS 35.0%
TTTCCTCCAATGCAATGTAA+AGG + chr8_4:45054198-45054217 None:intergenic 35.0%
!! TTAGCTTGCGATCAATAAGA+AGG + chr8_4:45054224-45054243 None:intergenic 35.0%
ACATTTATTATAGGGCATGG+GGG - chr8_4:45054254-45054273 Msa1327690:intron 35.0%
ATATTATGGTGCATGACCAA+GGG - chr8_4:45054316-45054335 Msa1327690:intron 35.0%
ATGTACAGTTGGATTCATGA+AGG + chr8_4:45054407-45054426 None:intergenic 35.0%
ACTAACAGCTAATGTACAGT+TGG + chr8_4:45054418-45054437 None:intergenic 35.0%
TTTGAATGCAACTACTGATG+AGG - chr8_4:45054437-45054456 Msa1327690:intron 35.0%
TTTGAGTATGTGATGCTTGA+AGG - chr8_4:45054674-45054693 Msa1327690:intron 35.0%
TGCTTGAAGGAATTAATGAC+AGG - chr8_4:45054687-45054706 Msa1327690:intron 35.0%
GAAGGAATTAATGACAGGTT+AGG - chr8_4:45054692-45054711 Msa1327690:intron 35.0%
GAACTCAAGCAATAAAGTGA+AGG + chr8_4:45054725-45054744 None:intergenic 35.0%
GAAACATGACAAAAGACACT+GGG + chr8_4:45054778-45054797 None:intergenic 35.0%
TAAATTGCCCTAACAGTTAG+AGG - chr8_4:45054957-45054976 Msa1327690:CDS 35.0%
TCAAACTCCTCTAACTGTTA+GGG + chr8_4:45054967-45054986 None:intergenic 35.0%
TGTCGTAAAAATTGGAATGG+TGG - chr8_4:45055089-45055108 Msa1327690:intron 35.0%
GCACAAACTACTTAATGAAG+AGG - chr8_4:45055139-45055158 Msa1327690:intron 35.0%
GAAGAGGATTAACACTTGAT+AGG - chr8_4:45055155-45055174 Msa1327690:intron 35.0%
CTCCCTATAACTGAATTCTT+AGG + chr8_4:45055241-45055260 None:intergenic 35.0%
TTTCACCACAAAAAGTCAAC+CGG - chr8_4:45055329-45055348 Msa1327690:CDS 35.0%
! ATGGTTGGATTTGGATCTTT+TGG + chr8_4:45055384-45055403 None:intergenic 35.0%
GAAGGTAAAATGGTTGGATT+TGG + chr8_4:45055393-45055412 None:intergenic 35.0%
ATGGATGAAGGTAAAATGGT+TGG + chr8_4:45055399-45055418 None:intergenic 35.0%
GTGAATGGATGAAGGTAAAA+TGG + chr8_4:45055403-45055422 None:intergenic 35.0%
TAGCATGCTATTGACAAGAA+TGG - chr8_4:45055629-45055648 Msa1327690:intron 35.0%
AGCATGCTATTGACAAGAAT+GGG - chr8_4:45055630-45055649 Msa1327690:intron 35.0%
! GAATGGGGAAAGGTATAATA+TGG - chr8_4:45055646-45055665 Msa1327690:CDS 35.0%
TAATATGGCTCGCAGTTATT+CGG - chr8_4:45055661-45055680 Msa1327690:CDS 35.0%
! ATAAGAGCATGACAAATGAG+TGG - chr8_4:45055698-45055717 Msa1327690:CDS 35.0%
GGCATCTTTGTTCTTATAGA+TGG + chr8_4:45055740-45055759 None:intergenic 35.0%
ACACATATTATATGGGCCTA+TGG - chr8_4:45055770-45055789 Msa1327690:intron 35.0%
CACATATTATATGGGCCTAT+GGG - chr8_4:45055771-45055790 Msa1327690:intron 35.0%
ACATATTATATGGGCCTATG+GGG - chr8_4:45055772-45055791 Msa1327690:intron 35.0%
TTTGTGAATTTAAGCCCCAT+AGG + chr8_4:45055789-45055808 None:intergenic 35.0%
GACCATGATAAAGGAAAAAC+AGG - chr8_4:45055883-45055902 Msa1327690:intron 35.0%
!! ATACAATTGGGTTCTGAAAG+AGG - chr8_4:45055921-45055940 Msa1327690:intron 35.0%
!! TCTGAAAGAGGTTTTATCGT+AGG - chr8_4:45055933-45055952 Msa1327690:intron 35.0%
TTGGTATTTGGAGAATCGAA+AGG - chr8_4:45056150-45056169 Msa1327690:intron 35.0%
TAAAGAAGTTAGAGATAGGG+GGG - chr8_4:45056178-45056197 Msa1327690:intron 35.0%
AAGAAAGTCACATGCTTTCA+CGG + chr8_4:45056208-45056227 None:intergenic 35.0%
!! TAAGGAAAGCCTTTTTCACT+AGG + chr8_4:45056367-45056386 None:intergenic 35.0%
! CATCCAAGTCTTATATGACA+TGG + chr8_4:45056446-45056465 None:intergenic 35.0%
GAGATTAGATTGATCTTGCA+AGG + chr8_4:45056572-45056591 None:intergenic 35.0%
ATCTCATTCAATCCACATAG+TGG - chr8_4:45056587-45056606 Msa1327690:intron 35.0%
TCAACGTGTTCTTTATAAGG+AGG - chr8_4:45056806-45056825 Msa1327690:intron 35.0%
! ACTTCATTTTGAATCTGGGA+TGG - chr8_4:45056881-45056900 Msa1327690:CDS 35.0%
! TTCAAATTCCTGAAGTTGGT+GGG - chr8_4:45057024-45057043 Msa1327690:CDS 35.0%
TGCATGAAATAACCAGAAAG+GGG - chr8_4:45057051-45057070 Msa1327690:CDS 35.0%
! GATGAAAACTTGCTTAGACT+TGG + chr8_4:45057225-45057244 None:intergenic 35.0%
! AGTCTAAGCAAGTTTTCATC+AGG - chr8_4:45057225-45057244 Msa1327690:five_prime_UTR 35.0%
GCAATGAAGTGAGAATGATG+AGG - chr8_4:45051035-45051054 Msa1327690:three_prime_UTR 40.0%
AAGAAGAAATGTTGTGGAGG+AGG + chr8_4:45051098-45051117 None:intergenic 40.0%
GTGAAGAAGAAATGTTGTGG+AGG + chr8_4:45051101-45051120 None:intergenic 40.0%
!! AGGTTTTGGTGAGAGAAAAG+GGG + chr8_4:45051135-45051154 None:intergenic 40.0%
!! GAGGTTTTGGTGAGAGAAAA+GGG + chr8_4:45051136-45051155 None:intergenic 40.0%
! AATAAGAAACGGCGAGGTTT+TGG + chr8_4:45051149-45051168 None:intergenic 40.0%
AAGGAAGAGATGAAGCAGAA+AGG + chr8_4:45051198-45051217 None:intergenic 40.0%
AATGAGAGAAGTTGAAGGTG+TGG + chr8_4:45051234-45051253 None:intergenic 40.0%
ACCTTCAACTTCTCTCATTC+CGG - chr8_4:45051235-45051254 Msa1327690:three_prime_UTR 40.0%
ACACCAACACTTCTGATGAA+AGG - chr8_4:45051443-45051462 Msa1327690:CDS 40.0%
! ACACCTTTCATCAGAAGTGT+TGG + chr8_4:45051449-45051468 None:intergenic 40.0%
AAGAGACTTAAGACCCTGTT+TGG + chr8_4:45051802-45051821 None:intergenic 40.0%
CATTTCCTGTAGAAGTCTTG+AGG - chr8_4:45052327-45052346 Msa1327690:intron 40.0%
CAAATCCTCAAGACTTCTAC+AGG + chr8_4:45052335-45052354 None:intergenic 40.0%
GTGGTCAATGGATACAGAAA+TGG - chr8_4:45052491-45052510 Msa1327690:intron 40.0%
! CAGAAATGGGTTCAATCACA+TGG - chr8_4:45052505-45052524 Msa1327690:intron 40.0%
GAGTGAACATGCAGATTTCA+AGG - chr8_4:45052862-45052881 Msa1327690:intron 40.0%
AGTGTTACATGCAACATTGG+AGG - chr8_4:45052999-45053018 Msa1327690:intron 40.0%
GTTGTCATACCTTGTGATAC+AGG - chr8_4:45053186-45053205 Msa1327690:intron 40.0%
CGGTTGTTCACAAGTGAAAT+TGG - chr8_4:45053429-45053448 Msa1327690:intron 40.0%
! AAAAGCACATTTCGCTGAGA+AGG - chr8_4:45053662-45053681 Msa1327690:intron 40.0%
TCTCCTTTACATTGCATTGG+AGG - chr8_4:45054192-45054211 Msa1327690:intron 40.0%
GATATTATGGTGCATGACCA+AGG - chr8_4:45054315-45054334 Msa1327690:intron 40.0%
CCTCTGTCTATTATTGCTCT+TGG + chr8_4:45054523-45054542 None:intergenic 40.0%
CCAAGAGCAATAATAGACAG+AGG - chr8_4:45054520-45054539 Msa1327690:intron 40.0%
GGAAACATGACAAAAGACAC+TGG + chr8_4:45054779-45054798 None:intergenic 40.0%
ACAAAAAGGAATGTGTGAGC+TGG - chr8_4:45054852-45054871 Msa1327690:CDS 40.0%
CAAAAAGGAATGTGTGAGCT+GGG - chr8_4:45054853-45054872 Msa1327690:CDS 40.0%
CTCAAACTCCTCTAACTGTT+AGG + chr8_4:45054968-45054987 None:intergenic 40.0%
ACAGTTAGAGGAGTTTGAGT+TGG - chr8_4:45054969-45054988 Msa1327690:CDS 40.0%
CGTAAAAATTGGAATGGTGG+AGG - chr8_4:45055092-45055111 Msa1327690:intron 40.0%
GAGGATTAACACTTGATAGG+AGG - chr8_4:45055158-45055177 Msa1327690:intron 40.0%
! TGGATTTGTTCATGGCTAGA+TGG - chr8_4:45055352-45055371 Msa1327690:CDS 40.0%
AAAAGGGAGTGAATGGATGA+AGG + chr8_4:45055411-45055430 None:intergenic 40.0%
CATGCTAATTAGCGGTGAAA+GGG + chr8_4:45055466-45055485 None:intergenic 40.0%
TCATGCTAATTAGCGGTGAA+AGG + chr8_4:45055467-45055486 None:intergenic 40.0%
GTCTCACTCATGCTAATTAG+CGG + chr8_4:45055474-45055493 None:intergenic 40.0%
GCATGCTATTGACAAGAATG+GGG - chr8_4:45055631-45055650 Msa1327690:intron 40.0%
CTATTGACAAGAATGGGGAA+AGG - chr8_4:45055636-45055655 Msa1327690:intron 40.0%
!! CTCTGAAACTAGTCTAGAAC+TGG + chr8_4:45056291-45056310 None:intergenic 40.0%
AGGCTAATCGAGCTTGTAAA+GGG - chr8_4:45056542-45056561 Msa1327690:intron 40.0%
ATCATCCTTTCCTCTTTCGT+TGG + chr8_4:45056626-45056645 None:intergenic 40.0%
ATTCCGAAATATGCTAGCTG+AGG - chr8_4:45056649-45056668 Msa1327690:intron 40.0%
TGTACCACAGCAATTCCAAA+TGG - chr8_4:45056772-45056791 Msa1327690:intron 40.0%
AGGGTTCAAATTCCTGAAGT+TGG - chr8_4:45057020-45057039 Msa1327690:CDS 40.0%
GTTCAAATTCCTGAAGTTGG+TGG - chr8_4:45057023-45057042 Msa1327690:CDS 40.0%
TTAAACATAACGCCCCTTTC+TGG + chr8_4:45057066-45057085 None:intergenic 40.0%
GATGAGGAATTGGATGAGCA+TGG - chr8_4:45051051-45051070 Msa1327690:three_prime_UTR 45.0%
GGTGAGAGAAAAGGGGATAA+TGG + chr8_4:45051128-45051147 None:intergenic 45.0%
!! CGAGGTTTTGGTGAGAGAAA+AGG + chr8_4:45051137-45051156 None:intergenic 45.0%
ACCGGAATGAGAGAAGTTGA+AGG + chr8_4:45051239-45051258 None:intergenic 45.0%
TGTCCGATATCCACACATGT+GGG + chr8_4:45051482-45051501 None:intergenic 45.0%
GGTCCATTAACATGTGGTCT+GGG - chr8_4:45052140-45052159 Msa1327690:intron 45.0%
GTCCATTAACATGTGGTCTG+GGG - chr8_4:45052141-45052160 Msa1327690:intron 45.0%
TCCATTAACATGTGGTCTGG+GGG - chr8_4:45052142-45052161 Msa1327690:intron 45.0%
GGGTTCAATCACATGGATAC+AGG - chr8_4:45052512-45052531 Msa1327690:intron 45.0%
AATCACATGGATACAGGCCA+GGG - chr8_4:45052518-45052537 Msa1327690:intron 45.0%
! CATCATACTGACGAGTTGGA+AGG - chr8_4:45052589-45052608 Msa1327690:intron 45.0%
!! ATTCACTTTGGATGATGGGC+TGG - chr8_4:45053152-45053171 Msa1327690:intron 45.0%
TCATACCTTGTGATACAGGC+AGG - chr8_4:45053190-45053209 Msa1327690:intron 45.0%
!! AGCCTGCTCAACTATTTCTG+CGG + chr8_4:45053397-45053416 None:intergenic 45.0%
!!! AGCAGGCTGTTTTTGCAAGA+CGG - chr8_4:45053409-45053428 Msa1327690:intron 45.0%
ATGTTGCGCACATTAGGCTT+AGG - chr8_4:45053594-45053613 Msa1327690:CDS 45.0%
AACATGTCTTAGTTGGGGCT+AGG - chr8_4:45053875-45053894 Msa1327690:CDS 45.0%
ATTGTCGTGTGTGCTAGAGA+TGG - chr8_4:45053996-45054015 Msa1327690:intron 45.0%
TGGTTGAAACAGTGACCTTG+CGG + chr8_4:45054356-45054375 None:intergenic 45.0%
AAGGTCACTGTTTCAACCAG+TGG - chr8_4:45054357-45054376 Msa1327690:intron 45.0%
AGGTCACTGTTTCAACCAGT+GGG - chr8_4:45054358-45054377 Msa1327690:intron 45.0%
! GCTTTTCGCGACTACTTCTA+TGG + chr8_4:45054501-45054520 None:intergenic 45.0%
! GGAATGGTGGAGGAACAAAA+AGG - chr8_4:45055102-45055121 Msa1327690:intron 45.0%
! CAACTAGATCTGGGACTTAC+TGG - chr8_4:45055288-45055307 Msa1327690:intron 45.0%
!! ATCCACCGGTTGACTTTTTG+TGG + chr8_4:45055337-45055356 None:intergenic 45.0%
! TCAACCGGTGGATTTGTTCA+TGG - chr8_4:45055344-45055363 Msa1327690:CDS 45.0%
CTAGCCATGAACAAATCCAC+CGG + chr8_4:45055351-45055370 None:intergenic 45.0%
CTAATTAGCGGTGAAAGGGA+AGG + chr8_4:45055462-45055481 None:intergenic 45.0%
! ACGAGAGGCCTCTTTTATTG+AGG + chr8_4:45055560-45055579 None:intergenic 45.0%
TCCTTTATCATGGTCGCTCT+CGG + chr8_4:45055878-45055897 None:intergenic 45.0%
!! AGAGGTTTTATCGTAGGCTC+CGG - chr8_4:45055939-45055958 Msa1327690:intron 45.0%
!! GAAAGCCTTTTTCACTAGGC+GGG + chr8_4:45056363-45056382 None:intergenic 45.0%
!! GGAAAGCCTTTTTCACTAGG+CGG + chr8_4:45056364-45056383 None:intergenic 45.0%
GCAGCAATGAAGATGCAAAG+AGG - chr8_4:45056522-45056541 Msa1327690:intron 45.0%
GAGGCTAATCGAGCTTGTAA+AGG - chr8_4:45056541-45056560 Msa1327690:intron 45.0%
CTGAAGAAGGATCCACTATG+TGG + chr8_4:45056602-45056621 None:intergenic 45.0%
! CTCTTTCGTTGGTCTGAAGA+AGG + chr8_4:45056615-45056634 None:intergenic 45.0%
CTTCTTCAGACCAACGAAAG+AGG - chr8_4:45056613-45056632 Msa1327690:intron 45.0%
TCAGACCAACGAAAGAGGAA+AGG - chr8_4:45056618-45056637 Msa1327690:intron 45.0%
CTGCCTCAGCTAGCATATTT+CGG + chr8_4:45056655-45056674 None:intergenic 45.0%
!!! GTCCTTTTAAGACCGAGTAG+AGG - chr8_4:45056683-45056702 Msa1327690:intron 45.0%
ATCTGATCATCGCCTCTACT+CGG + chr8_4:45056698-45056717 None:intergenic 45.0%
! ACGTAGCATTGGAGCTTGAA+GGG + chr8_4:45056753-45056772 None:intergenic 45.0%
ACCACAGCAATTCCAAATGG+CGG - chr8_4:45056775-45056794 Msa1327690:intron 45.0%
TTGAACTTCCAACCGCCATT+TGG + chr8_4:45056790-45056809 None:intergenic 45.0%
TCTCAGTATTCTGTCCACCA+CGG + chr8_4:45056917-45056936 None:intergenic 45.0%
TGCAAAAACCCACCAACTTC+AGG + chr8_4:45057035-45057054 None:intergenic 45.0%
GTCATGTGGGAAAAGTCATG+TGG - chr8_4:45057138-45057157 Msa1327690:CDS 45.0%
!! AATAAATATATTAAAAAAGA+TGG + chr8_4:45051273-45051292 None:intergenic 5.0%
!! ATTATATAAACTAAATTAAT+TGG + chr8_4:45053729-45053748 None:intergenic 5.0%
!!! TTTTATATTTGATTAAATAT+TGG - chr8_4:45057110-45057129 Msa1327690:CDS 5.0%
!! TTTATATTTGATTAAATATT+GGG - chr8_4:45057111-45057130 Msa1327690:CDS 5.0%
GTGTGGTCAGTGGAGATAGA+AGG + chr8_4:45051217-45051236 None:intergenic 50.0%
! GAAGTTGAAGGTGTGGTCAG+TGG + chr8_4:45051227-45051246 None:intergenic 50.0%
! AGTGTTGCAGTTTCGAGTCG+AGG - chr8_4:45051349-45051368 Msa1327690:three_prime_UTR 50.0%
! CTGATGAAAGGTGTGTCCGA+TGG - chr8_4:45051455-45051474 Msa1327690:CDS 50.0%
ATCCACACATGTGGGACCAT+CGG + chr8_4:45051474-45051493 None:intergenic 50.0%
GGTCCCACATGTGTGGATAT+CGG - chr8_4:45051476-45051495 Msa1327690:CDS 50.0%
GTGTCCGATATCCACACATG+TGG + chr8_4:45051483-45051502 None:intergenic 50.0%
CAGCTCGGTCCATTAACATG+TGG - chr8_4:45052134-45052153 Msa1327690:intron 50.0%
CGGTCCATTAACATGTGGTC+TGG - chr8_4:45052139-45052158 Msa1327690:intron 50.0%
ACCCCCAGACCACATGTTAA+TGG + chr8_4:45052146-45052165 None:intergenic 50.0%
CAATCACATGGATACAGGCC+AGG - chr8_4:45052517-45052536 Msa1327690:intron 50.0%
GAAATTCACGCAGCGTCTGA+TGG - chr8_4:45052899-45052918 Msa1327690:intron 50.0%
AGCGTCTGATGGAACTAGGA+AGG - chr8_4:45052910-45052929 Msa1327690:intron 50.0%
GTAGTCCTGCCTGTATCACA+AGG + chr8_4:45053198-45053217 None:intergenic 50.0%
GTGTGCGTTTCCAGTCAAGT+TGG - chr8_4:45053219-45053238 Msa1327690:intron 50.0%
CATGGCACATCCAACTTGAC+TGG + chr8_4:45053232-45053251 None:intergenic 50.0%
TGCCGCAGAAATAGTTGAGC+AGG - chr8_4:45053392-45053411 Msa1327690:intron 50.0%
AGCCTGATGTTGCGCACATT+AGG - chr8_4:45053588-45053607 Msa1327690:CDS 50.0%
AGCCTAATGTGCGCAACATC+AGG + chr8_4:45053593-45053612 None:intergenic 50.0%
TTACAGGGTCCACTCAACTC+TGG + chr8_4:45053774-45053793 None:intergenic 50.0%
GTGTGTGCTAGAGATGGAGA+GGG - chr8_4:45054002-45054021 Msa1327690:intron 50.0%
TTGAAACAGTGACCTTGCGG+GGG + chr8_4:45054353-45054372 None:intergenic 50.0%
GTTGAAACAGTGACCTTGCG+GGG + chr8_4:45054354-45054373 None:intergenic 50.0%
GGTTGAAACAGTGACCTTGC+GGG + chr8_4:45054355-45054374 None:intergenic 50.0%
TGAAGGAAACGTCTGAGCTG+CGG + chr8_4:45054390-45054409 None:intergenic 50.0%
GCTTCTTGAGACACTTCGTG+AGG - chr8_4:45054619-45054638 Msa1327690:intron 50.0%
! ATCTGGGACTTACTGGTGAG+AGG - chr8_4:45055295-45055314 Msa1327690:intron 50.0%
CACCACAAAAAGTCAACCGG+TGG - chr8_4:45055332-45055351 Msa1327690:CDS 50.0%
AGCGGTGAAAGGGAAGGAAA+AGG + chr8_4:45055456-45055475 None:intergenic 50.0%
TAGAGGACATGCAGTACGAG+AGG + chr8_4:45055575-45055594 None:intergenic 50.0%
GCTATAGCAGTGTAGCAGAG+CGG + chr8_4:45055609-45055628 None:intergenic 50.0%
TCACGACTAGTGTGTGGACA+CGG - chr8_4:45056012-45056031 Msa1327690:intron 50.0%
!! CTTTTTCACTAGGCGGGAAC+TGG + chr8_4:45056357-45056376 None:intergenic 50.0%
CAGTTCCCGCCTAGTGAAAA+AGG - chr8_4:45056355-45056374 Msa1327690:intron 50.0%
CGAAATATGCTAGCTGAGGC+AGG - chr8_4:45056653-45056672 Msa1327690:intron 50.0%
CGCCTCTACTCGGTCTTAAA+AGG + chr8_4:45056688-45056707 None:intergenic 50.0%
GAGTAGAGGCGATGATCAGA+TGG - chr8_4:45056697-45056716 Msa1327690:intron 50.0%
GATGATCAGATGGCTGCATG+TGG - chr8_4:45056707-45056726 Msa1327690:intron 50.0%
ATGGCTGCATGTGGTCAGTT+AGG - chr8_4:45056716-45056735 Msa1327690:intron 50.0%
! CACGTAGCATTGGAGCTTGA+AGG + chr8_4:45056754-45056773 None:intergenic 50.0%
TGCTGTGGTACACGTAGCAT+TGG + chr8_4:45056764-45056783 None:intergenic 50.0%
! ACCGCCATTTGGAATTGCTG+TGG + chr8_4:45056779-45056798 None:intergenic 50.0%
CAGCAATTCCAAATGGCGGT+TGG - chr8_4:45056779-45056798 Msa1327690:intron 50.0%
! ATGGAATGAAGTGTCCGTGG+TGG - chr8_4:45056900-45056919 Msa1327690:intron 50.0%
! AAGCTGAGGGGCGCAAATAT+GGG + chr8_4:45056969-45056988 None:intergenic 50.0%
! AAAGCTGAGGGGCGCAAATA+TGG + chr8_4:45056970-45056989 None:intergenic 50.0%
GCAGAAAGGAAGCGACGAGA+GGG + chr8_4:45051184-45051203 None:intergenic 55.0%
AGCAGAAAGGAAGCGACGAG+AGG + chr8_4:45051185-45051204 None:intergenic 55.0%
CATAACATCATGGCCTGCCC+TGG + chr8_4:45052538-45052557 None:intergenic 55.0%
CAGGGCAGGCCATGATGTTA+TGG - chr8_4:45052536-45052555 Msa1327690:intron 55.0%
GGCGCATCATACTGACGAGT+TGG - chr8_4:45052585-45052604 Msa1327690:intron 55.0%
ACGCAGCGTCTGATGGAACT+AGG - chr8_4:45052906-45052925 Msa1327690:intron 55.0%
GCGCACATTAGGCTTAGGCT+AGG - chr8_4:45053599-45053618 Msa1327690:CDS 55.0%
TCGCTGAGAAGGCTAGACTC+CGG - chr8_4:45053673-45053692 Msa1327690:intron 55.0%
CGTGTGTGCTAGAGATGGAG+AGG - chr8_4:45054001-45054020 Msa1327690:intron 55.0%
TGCATGTCCTCTAGCAGCCA+GGG - chr8_4:45055582-45055601 Msa1327690:intron 55.0%
GCCGAGAGCGACCATGATAA+AGG - chr8_4:45055874-45055893 Msa1327690:intron 55.0%
ACTAGTGTGTGGACACGGTG+AGG - chr8_4:45056017-45056036 Msa1327690:intron 55.0%
!! CCACTGCGTATTTTGGGCTC+TGG + chr8_4:45056318-45056337 None:intergenic 55.0%
CCAGAGCCCAAAATACGCAG+TGG - chr8_4:45056315-45056334 Msa1327690:intron 55.0%
TGTGGTCAGTTAGGCAAGCC+TGG - chr8_4:45056725-45056744 Msa1327690:intron 55.0%
!! ATTGGAGCTTGAAGGGTGCC+AGG + chr8_4:45056746-45056765 None:intergenic 55.0%
! GGGATGGAATGAAGTGTCCG+TGG - chr8_4:45056897-45056916 Msa1327690:intron 55.0%
AAGGAAGCGACGAGAGGGAG+TGG + chr8_4:45051179-45051198 None:intergenic 60.0%
GTCCGATGGTCCCACATGTG+TGG - chr8_4:45051469-45051488 Msa1327690:CDS 60.0%
ACATGGATACAGGCCAGGGC+AGG - chr8_4:45052522-45052541 Msa1327690:intron 60.0%
GTGCGCAACATCAGGCTGTC+TGG + chr8_4:45053585-45053604 None:intergenic 60.0%
GGGGGCTGAAATGAAGCCCT+TGG + chr8_4:45054335-45054354 None:intergenic 60.0%
GCTTCATTTCAGCCCCCGCA+AGG - chr8_4:45054338-45054357 Msa1327690:intron 60.0%
CTGCATGTCCTCTAGCAGCC+AGG - chr8_4:45055581-45055600 Msa1327690:intron 60.0%
GCATGTCCTCTAGCAGCCAG+GGG - chr8_4:45055583-45055602 Msa1327690:intron 60.0%
AGGGGGTCACGACTAGTGTG+TGG - chr8_4:45056006-45056025 Msa1327690:intron 60.0%
GAGCTGCGGAACAAGCCCAC+TGG + chr8_4:45054376-45054395 None:intergenic 65.0%
CAGTGTAGCAGAGCGGCCCC+TGG + chr8_4:45055602-45055621 None:intergenic 70.0%
GAGCGGCCCCTGGCTGCTAG+AGG + chr8_4:45055592-45055611 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 45050999 45057250 45050999 ID=Msa1327690;Name=Msa1327690
chr8_4 mRNA 45050999 45057250 45050999 ID=Msa1327690-mRNA-1;Parent=Msa1327690;Name=Msa1327690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=50|0.75|0.77|1|1|1|9|427|464
chr8_4 exon 45050999 45051723 45050999 ID=Msa1327690-mRNA-1:exon:12608;Parent=Msa1327690-mRNA-1
chr8_4 exon 45053541 45053677 45053541 ID=Msa1327690-mRNA-1:exon:12607;Parent=Msa1327690-mRNA-1
chr8_4 exon 45053791 45053982 45053791 ID=Msa1327690-mRNA-1:exon:12606;Parent=Msa1327690-mRNA-1
chr8_4 exon 45054773 45054881 45054773 ID=Msa1327690-mRNA-1:exon:12605;Parent=Msa1327690-mRNA-1
chr8_4 exon 45054894 45055102 45054894 ID=Msa1327690-mRNA-1:exon:12604;Parent=Msa1327690-mRNA-1
chr8_4 exon 45055318 45055415 45055318 ID=Msa1327690-mRNA-1:exon:12603;Parent=Msa1327690-mRNA-1
chr8_4 exon 45055639 45055741 45055639 ID=Msa1327690-mRNA-1:exon:12602;Parent=Msa1327690-mRNA-1
chr8_4 exon 45056871 45056911 45056871 ID=Msa1327690-mRNA-1:exon:12601;Parent=Msa1327690-mRNA-1
chr8_4 exon 45056993 45057250 45056993 ID=Msa1327690-mRNA-1:exon:12600;Parent=Msa1327690-mRNA-1
chr8_4 five_prime_UTR 45057201 45057250 45057201 ID=Msa1327690-mRNA-1:five_prime_utr;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45056993 45057200 45056993 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45056871 45056911 45056871 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45055639 45055741 45055639 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45055318 45055415 45055318 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45054894 45055102 45054894 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45054773 45054881 45054773 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45053791 45053982 45053791 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45053541 45053677 45053541 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 CDS 45051426 45051723 45051426 ID=Msa1327690-mRNA-1:cds;Parent=Msa1327690-mRNA-1
chr8_4 three_prime_UTR 45050999 45051425 45050999 ID=Msa1327690-mRNA-1:three_prime_utr;Parent=Msa1327690-mRNA-1
Gene Sequence

>Msa1327690

ATGATGAGGAATTGGATGAGCATGGCGACGAGCGCATTAGCAAACTCCTCCTCCACAACATTTCTTCTTCACAAAACCATTATCCCCTTTTCTCTCACCAAAACCTCGCCGTTTCTTATTTCTTTTACCACTCCCTCTCGTCGCTTCCTTTCTGCTTCATCTCTTCCTTCTATCTCCACTGACCACACCTTCAACTTCTCTCATTCCGGAGATGGAAATAGTGTTGCAGTTTCGAGTCGAGGTTCAAAAAAATGGGTTCAATCACATGGATACAGGCCAGGGCAGGCCATGATGTTATGGAAACGTATGTATGGAAACAACATTTGGGCGCATCATACTGACGAGTTGGAAGGTTTGAACAAAGATTTCAAGCAGATGTTGAGTGAACATGCAGATTTCAAGGCACTTGCTGTGAAAGAAATTCACGCAGCGTCTGATGGAACTAGGAAGATTTTATTCACTTTGGATGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGATACAGGCAGGACTACTGTGTGCGTTTCCAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACAGGAAGGCAAGCCTTTTTTCTGTCTATAATGATCGATTCAGTGGCTACACCGTCTTTACTTTTATTGCATGTTTTTCATTCAATAATGGGTCTCAAGAGACATCTTACTGCCGCAGAAATAGTTGAGCAGGCTGTTTTTGCAAGACGGTTGTTCACAAGTGAAATTGGTTCCATCACCAATGTTGTATTTATGGGCATGGGGGAACCTCTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGCATGACCAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGTGGGCTTGTTCCGCAGCTCAGACGTTTCCTTCATGAATCCAACTGTACATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACACTTCGTGAGGAGCTTTCCTTCAAACATAAATATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGCAATGAAGATGCAAAGAGGCTAATCGAGCTTGTAAAGGGCATCCCTTGCAAGATCAATCTAATCTCATTCAATCCACATAGTGGATCCTTCTTCAGACCAACGAAAGAGGAAAGGATGATTGAATTCCGAAATATGCTAGCTGAGGCAGGATGTGTAGTCCTTTTAAGACCGAGTAGAGGCGATGATCAGATGGCTGCATGTGGTCAGTTAGGCAAGCCTGGCACCCTTCAAGCTCCAATGCTACGTGTACCACAGCAATTCCAAATGGCGGTTGGAAGTTCAACGTGTTCTTTATAA

Protein sequence

>Msa1327690

MMRNWMSMATSALANSSSTTFLLHKTIIPFSLTKTSPFLISFTTPSRRFLSASSLPSISTDHTFNFSHSGDGNSVAVSSRGSKKWVQSHGYRPGQAMMLWKRMYGNNIWAHHTDELEGLNKDFKQMLSEHADFKALAVKEIHAASDGTRKILFTLDDGLVIETVVIPCDTGRTTVCVSSQVGCAMNCQFCYTGRQAFFLSIMIDSVATPSLLLLHVFHSIMGLKRHLTAAEIVEQAVFARRLFTSEIGSITNVVFMGMGEPLHNIDNVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLRRFLHESNCTLAVSLNATTDEVRNWIMPINRKYKLDLLLETLREELSFKHKYKVLFEYVMLEGINDSNEDAKRLIELVKGIPCKINLISFNPHSGSFFRPTKEERMIEFRNMLAEAGCVVLLRPSRGDDQMAACGQLGKPGTLQAPMLRVPQQFQMAVGSSTCSL*