Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828690 | RHN65490.1 | 67.857 | 56 | 13 | 1 | 5 | 55 | 2 | 57 | 2.96e-13 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828690 | A0A396IJW8 | 67.857 | 56 | 13 | 1 | 5 | 55 | 2 | 57 | 1.42e-13 | 76.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0828690 | Msa1121490 | 0.801959 | 7.040652e-49 | -8.615850e-47 |
| Msa0371730 | Msa0828690 | 0.816707 | 4.813027e-52 | -8.615850e-47 |
| Msa0397900 | Msa0828690 | 0.959740 | 8.922992e-118 | -8.615850e-47 |
| Msa0444750 | Msa0828690 | -0.804737 | 1.871318e-49 | -8.615850e-47 |
| Msa0466120 | Msa0828690 | 0.805742 | 1.152252e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828690 | MtrunA17_Chr3g0080441 | 67.857 | 56 | 13 | 1 | 5 | 55 | 2 | 57 | 2.72e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATCAATTAATTATTT+TGG | 0.141252 | 5_4:-1594337 | None:intergenic |
| TTCAAAGAGGTGATATAGTA+TGG | 0.249719 | 5_4:+1593420 | Msa0828690:CDS |
| AAGGTGCATTGTGGGGTGTT+GGG | 0.335380 | 5_4:-1593533 | None:intergenic |
| AACTTCAGATTCGACCAAAA+AGG | 0.375842 | 5_4:-1593552 | None:intergenic |
| TTGGAAGATGTGAGCAAAGC+TGG | 0.426119 | 5_4:-1593476 | None:intergenic |
| AGGTGCATTGTGGGGTGTTG+GGG | 0.451372 | 5_4:-1593532 | None:intergenic |
| AAAGGTGCATTGTGGGGTGT+TGG | 0.451525 | 5_4:-1593534 | None:intergenic |
| CTCACATCTTCCAACGATCT+CGG | 0.456832 | 5_4:+1593485 | Msa0828690:CDS |
| CCTCTTGCTCGTCTTGAGCT+AGG | 0.469882 | 5_4:+1593832 | Msa0828690:CDS |
| TAATTCACTTCCCTCAGAAC+AGG | 0.474692 | 5_4:+1593450 | Msa0828690:CDS |
| GAGTGAGATGCCGAGATCGT+TGG | 0.518357 | 5_4:-1593495 | None:intergenic |
| AAGCTGGAGACCTGTTCTGA+GGG | 0.557278 | 5_4:-1593460 | None:intergenic |
| CAATTATAGCAGAACAAGCG+TGG | 0.564339 | 5_4:+1594200 | Msa0828690:intron |
| TCTTTGAACATTCCTCGTCA+TGG | 0.566483 | 5_4:-1593405 | None:intergenic |
| CCTAGCTCAAGACGAGCAAG+AGG | 0.574921 | 5_4:-1593832 | None:intergenic |
| CAAGCGTGGGAACCGAAAGA+TGG | 0.582509 | 5_4:+1594214 | Msa0828690:CDS |
| AAAGCTGGAGACCTGTTCTG+AGG | 0.589143 | 5_4:-1593461 | None:intergenic |
| GATTCAACCTCAGTCGTAGG+AGG | 0.605163 | 5_4:-1594284 | None:intergenic |
| GAGCATTCCTCCTACGACTG+AGG | 0.605605 | 5_4:+1594277 | Msa0828690:CDS |
| TCAAAGAGGTGATATAGTAT+GGG | 0.609657 | 5_4:+1593421 | Msa0828690:CDS |
| TCAGATTCAACCTCAGTCGT+AGG | 0.616826 | 5_4:-1594287 | None:intergenic |
| AATTATAGCAGAACAAGCGT+GGG | 0.679794 | 5_4:+1594201 | Msa0828690:intron |
| ATGACGAGGAATGTTCAAAG+AGG | 0.692384 | 5_4:+1593407 | Msa0828690:CDS |
| AAACAGACATAACCATGACG+AGG | 0.720821 | 5_4:+1593393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTCTTCTTTTTTGAAA+CGG | - | chr5_4:1593880-1593899 | None:intergenic | 20.0% |
| !!! | GATTTTCTTCTTTTTTGAAA+CGG | - | chr5_4:1593880-1593899 | None:intergenic | 20.0% |
| !!! | TTATTTGCTGTCTTTTTTAG+TGG | - | chr5_4:1593938-1593957 | None:intergenic | 25.0% |
| !! | TTGCATTTTATTATCATTGC+TGG | - | chr5_4:1594165-1594184 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATGAATTCAGAC+TGG | - | chr5_4:1594256-1594275 | None:intergenic | 25.0% |
| !!! | TTATTTGCTGTCTTTTTTAG+TGG | - | chr5_4:1593938-1593957 | None:intergenic | 25.0% |
| !! | TTGCATTTTATTATCATTGC+TGG | - | chr5_4:1594165-1594184 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATGAATTCAGAC+TGG | - | chr5_4:1594256-1594275 | None:intergenic | 25.0% |
| TTCAAAGAGGTGATATAGTA+TGG | + | chr5_4:1593420-1593439 | Msa0828690:CDS | 30.0% | |
| TCAAAGAGGTGATATAGTAT+GGG | + | chr5_4:1593421-1593440 | Msa0828690:CDS | 30.0% | |
| TGAAAGGGTGATTTATTGAA+GGG | - | chr5_4:1593581-1593600 | None:intergenic | 30.0% | |
| TTGAAAGGGTGATTTATTGA+AGG | - | chr5_4:1593582-1593601 | None:intergenic | 30.0% | |
| ATAACTATAAACGAGCAGAA+TGG | - | chr5_4:1593631-1593650 | None:intergenic | 30.0% | |
| AAAAGACAACTAAGATAGCA+AGG | + | chr5_4:1594024-1594043 | Msa0828690:intron | 30.0% | |
| !!! | TATTTTGATATGGTGGTGAA+TGG | - | chr5_4:1594079-1594098 | None:intergenic | 30.0% |
| !!! | TGTTTGGTATTTTGATATGG+TGG | - | chr5_4:1594086-1594105 | None:intergenic | 30.0% |
| !!! | CTCTGTTTGGTATTTTGATA+TGG | - | chr5_4:1594089-1594108 | None:intergenic | 30.0% |
| !!! | TTTTGGCTTGTTATTTCTGT+AGG | - | chr5_4:1594323-1594342 | None:intergenic | 30.0% |
| TTCAAAGAGGTGATATAGTA+TGG | + | chr5_4:1593420-1593439 | Msa0828690:CDS | 30.0% | |
| TCAAAGAGGTGATATAGTAT+GGG | + | chr5_4:1593421-1593440 | Msa0828690:CDS | 30.0% | |
| TGAAAGGGTGATTTATTGAA+GGG | - | chr5_4:1593581-1593600 | None:intergenic | 30.0% | |
| TTGAAAGGGTGATTTATTGA+AGG | - | chr5_4:1593582-1593601 | None:intergenic | 30.0% | |
| ATAACTATAAACGAGCAGAA+TGG | - | chr5_4:1593631-1593650 | None:intergenic | 30.0% | |
| AAAAGACAACTAAGATAGCA+AGG | + | chr5_4:1594024-1594043 | Msa0828690:intron | 30.0% | |
| !!! | TATTTTGATATGGTGGTGAA+TGG | - | chr5_4:1594079-1594098 | None:intergenic | 30.0% |
| !!! | TGTTTGGTATTTTGATATGG+TGG | - | chr5_4:1594086-1594105 | None:intergenic | 30.0% |
| !!! | CTCTGTTTGGTATTTTGATA+TGG | - | chr5_4:1594089-1594108 | None:intergenic | 30.0% |
| !!! | TTTTGGCTTGTTATTTCTGT+AGG | - | chr5_4:1594323-1594342 | None:intergenic | 30.0% |
| AACTTCAGATTCGACCAAAA+AGG | - | chr5_4:1593555-1593574 | None:intergenic | 35.0% | |
| GAAAGGGTGATTTATTGAAG+GGG | - | chr5_4:1593580-1593599 | None:intergenic | 35.0% | |
| !!! | TGAATGGTGTCGTTTTGAAA+GGG | - | chr5_4:1593596-1593615 | None:intergenic | 35.0% |
| !!! | TTGAATGGTGTCGTTTTGAA+AGG | - | chr5_4:1593597-1593616 | None:intergenic | 35.0% |
| ATGGAATGCTTCACATTGAA+TGG | - | chr5_4:1593612-1593631 | None:intergenic | 35.0% | |
| ! | TTTACAGTGTCGCTGTATAA+TGG | + | chr5_4:1593673-1593692 | Msa0828690:intron | 35.0% |
| ! | TTACAGTGTCGCTGTATAAT+GGG | + | chr5_4:1593674-1593693 | Msa0828690:intron | 35.0% |
| ! | TATAATGGGACATAACGAAG+AGG | + | chr5_4:1593688-1593707 | Msa0828690:intron | 35.0% |
| ! | TTGTTGTAGCAGTGTGTTTT+TGG | + | chr5_4:1593776-1593795 | Msa0828690:intron | 35.0% |
| !!! | TAGCAGTGTGTTTTTGGTTT+TGG | + | chr5_4:1593782-1593801 | Msa0828690:intron | 35.0% |
| ! | CTAGTTATGTTGGTTAGATG+TGG | - | chr5_4:1593986-1594005 | None:intergenic | 35.0% |
| CACATCTAACCAACATAACT+AGG | + | chr5_4:1593984-1594003 | Msa0828690:intron | 35.0% | |
| !!! | CTAGTTTTGCCTAGTTATGT+TGG | - | chr5_4:1593996-1594015 | None:intergenic | 35.0% |
| CAACATAACTAGGCAAAACT+AGG | + | chr5_4:1593994-1594013 | Msa0828690:intron | 35.0% | |
| ! | TGGAGAATGTTGTGTCATTA+TGG | - | chr5_4:1594059-1594078 | None:intergenic | 35.0% |
| !! | TTTGTTTAGCTCTCTCTGTT+TGG | - | chr5_4:1594102-1594121 | None:intergenic | 35.0% |
| AATTATAGCAGAACAAGCGT+GGG | + | chr5_4:1594201-1594220 | Msa0828690:intron | 35.0% | |
| !! | TCTGTTTTTCAGCCATCTTT+CGG | - | chr5_4:1594229-1594248 | None:intergenic | 35.0% |
| AACTTCAGATTCGACCAAAA+AGG | - | chr5_4:1593555-1593574 | None:intergenic | 35.0% | |
| GAAAGGGTGATTTATTGAAG+GGG | - | chr5_4:1593580-1593599 | None:intergenic | 35.0% | |
| !!! | TGAATGGTGTCGTTTTGAAA+GGG | - | chr5_4:1593596-1593615 | None:intergenic | 35.0% |
| !!! | TTGAATGGTGTCGTTTTGAA+AGG | - | chr5_4:1593597-1593616 | None:intergenic | 35.0% |
| ATGGAATGCTTCACATTGAA+TGG | - | chr5_4:1593612-1593631 | None:intergenic | 35.0% | |
| ! | TTTACAGTGTCGCTGTATAA+TGG | + | chr5_4:1593673-1593692 | Msa0828690:intron | 35.0% |
| ! | TTACAGTGTCGCTGTATAAT+GGG | + | chr5_4:1593674-1593693 | Msa0828690:intron | 35.0% |
| ! | TATAATGGGACATAACGAAG+AGG | + | chr5_4:1593688-1593707 | Msa0828690:intron | 35.0% |
| ! | TTGTTGTAGCAGTGTGTTTT+TGG | + | chr5_4:1593776-1593795 | Msa0828690:intron | 35.0% |
| !!! | TAGCAGTGTGTTTTTGGTTT+TGG | + | chr5_4:1593782-1593801 | Msa0828690:intron | 35.0% |
| ! | CTAGTTATGTTGGTTAGATG+TGG | - | chr5_4:1593986-1594005 | None:intergenic | 35.0% |
| CACATCTAACCAACATAACT+AGG | + | chr5_4:1593984-1594003 | Msa0828690:intron | 35.0% | |
| !!! | CTAGTTTTGCCTAGTTATGT+TGG | - | chr5_4:1593996-1594015 | None:intergenic | 35.0% |
| CAACATAACTAGGCAAAACT+AGG | + | chr5_4:1593994-1594013 | Msa0828690:intron | 35.0% | |
| ! | TGGAGAATGTTGTGTCATTA+TGG | - | chr5_4:1594059-1594078 | None:intergenic | 35.0% |
| !! | TTTGTTTAGCTCTCTCTGTT+TGG | - | chr5_4:1594102-1594121 | None:intergenic | 35.0% |
| AATTATAGCAGAACAAGCGT+GGG | + | chr5_4:1594201-1594220 | Msa0828690:intron | 35.0% | |
| !! | TCTGTTTTTCAGCCATCTTT+CGG | - | chr5_4:1594229-1594248 | None:intergenic | 35.0% |
| ATGACGAGGAATGTTCAAAG+AGG | + | chr5_4:1593407-1593426 | Msa0828690:CDS | 40.0% | |
| TAATTCACTTCCCTCAGAAC+AGG | + | chr5_4:1593450-1593469 | Msa0828690:CDS | 40.0% | |
| !!! | GAAGAGGAGAGGGTTTTAAA+TGG | + | chr5_4:1593704-1593723 | Msa0828690:intron | 40.0% |
| !!! | GAGAGGGTTTTAAATGGTTC+AGG | + | chr5_4:1593710-1593729 | Msa0828690:intron | 40.0% |
| !!! | CAGTGTGTTTTTGGTTTTGG+TGG | + | chr5_4:1593785-1593804 | Msa0828690:intron | 40.0% |
| CACGCTTGTTCTGCTATAAT+TGG | - | chr5_4:1594202-1594221 | None:intergenic | 40.0% | |
| CAATTATAGCAGAACAAGCG+TGG | + | chr5_4:1594200-1594219 | Msa0828690:intron | 40.0% | |
| ATGACGAGGAATGTTCAAAG+AGG | + | chr5_4:1593407-1593426 | Msa0828690:CDS | 40.0% | |
| TAATTCACTTCCCTCAGAAC+AGG | + | chr5_4:1593450-1593469 | Msa0828690:CDS | 40.0% | |
| !!! | GAAGAGGAGAGGGTTTTAAA+TGG | + | chr5_4:1593704-1593723 | Msa0828690:intron | 40.0% |
| !!! | GAGAGGGTTTTAAATGGTTC+AGG | + | chr5_4:1593710-1593729 | Msa0828690:intron | 40.0% |
| !!! | CAGTGTGTTTTTGGTTTTGG+TGG | + | chr5_4:1593785-1593804 | Msa0828690:intron | 40.0% |
| CACGCTTGTTCTGCTATAAT+TGG | - | chr5_4:1594202-1594221 | None:intergenic | 40.0% | |
| CAATTATAGCAGAACAAGCG+TGG | + | chr5_4:1594200-1594219 | Msa0828690:intron | 40.0% | |
| TTGGAAGATGTGAGCAAAGC+TGG | - | chr5_4:1593479-1593498 | None:intergenic | 45.0% | |
| CTCACATCTTCCAACGATCT+CGG | + | chr5_4:1593485-1593504 | Msa0828690:CDS | 45.0% | |
| ! | GACCAAAAAGGTGCATTGTG+GGG | - | chr5_4:1593543-1593562 | None:intergenic | 45.0% |
| ! | CGACCAAAAAGGTGCATTGT+GGG | - | chr5_4:1593544-1593563 | None:intergenic | 45.0% |
| ! | TCGACCAAAAAGGTGCATTG+TGG | - | chr5_4:1593545-1593564 | None:intergenic | 45.0% |
| ! | TTCAGGTTACCAGTTTGACC+CGG | + | chr5_4:1593727-1593746 | Msa0828690:intron | 45.0% |
| ! | TTTGACCCGGTTGGAGTTTT+GGG | + | chr5_4:1593740-1593759 | Msa0828690:intron | 45.0% |
| TGATACCCAAAACTCCAACC+GGG | - | chr5_4:1593748-1593767 | None:intergenic | 45.0% | |
| CTGATACCCAAAACTCCAAC+CGG | - | chr5_4:1593749-1593768 | None:intergenic | 45.0% | |
| !!! | GTGTTTTTGGTTTTGGTGGC+AGG | + | chr5_4:1593789-1593808 | Msa0828690:intron | 45.0% |
| GTGGCTGTATGACAGTTAGT+AGG | - | chr5_4:1594135-1594154 | None:intergenic | 45.0% | |
| TCAGATTCAACCTCAGTCGT+AGG | - | chr5_4:1594290-1594309 | None:intergenic | 45.0% | |
| TTGGAAGATGTGAGCAAAGC+TGG | - | chr5_4:1593479-1593498 | None:intergenic | 45.0% | |
| CTCACATCTTCCAACGATCT+CGG | + | chr5_4:1593485-1593504 | Msa0828690:CDS | 45.0% | |
| ! | GACCAAAAAGGTGCATTGTG+GGG | - | chr5_4:1593543-1593562 | None:intergenic | 45.0% |
| ! | CGACCAAAAAGGTGCATTGT+GGG | - | chr5_4:1593544-1593563 | None:intergenic | 45.0% |
| ! | TCGACCAAAAAGGTGCATTG+TGG | - | chr5_4:1593545-1593564 | None:intergenic | 45.0% |
| ! | TTCAGGTTACCAGTTTGACC+CGG | + | chr5_4:1593727-1593746 | Msa0828690:intron | 45.0% |
| ! | TTTGACCCGGTTGGAGTTTT+GGG | + | chr5_4:1593740-1593759 | Msa0828690:intron | 45.0% |
| TGATACCCAAAACTCCAACC+GGG | - | chr5_4:1593748-1593767 | None:intergenic | 45.0% | |
| CTGATACCCAAAACTCCAAC+CGG | - | chr5_4:1593749-1593768 | None:intergenic | 45.0% | |
| !!! | GTGTTTTTGGTTTTGGTGGC+AGG | + | chr5_4:1593789-1593808 | Msa0828690:intron | 45.0% |
| GTGGCTGTATGACAGTTAGT+AGG | - | chr5_4:1594135-1594154 | None:intergenic | 45.0% | |
| TCAGATTCAACCTCAGTCGT+AGG | - | chr5_4:1594290-1594309 | None:intergenic | 45.0% | |
| AAGCTGGAGACCTGTTCTGA+GGG | - | chr5_4:1593463-1593482 | None:intergenic | 50.0% | |
| AAAGCTGGAGACCTGTTCTG+AGG | - | chr5_4:1593464-1593483 | None:intergenic | 50.0% | |
| ! | AAGGTGCATTGTGGGGTGTT+GGG | - | chr5_4:1593536-1593555 | None:intergenic | 50.0% |
| ! | AAAGGTGCATTGTGGGGTGT+TGG | - | chr5_4:1593537-1593556 | None:intergenic | 50.0% |
| ! | CACCCCACAATGCACCTTTT+TGG | + | chr5_4:1593538-1593557 | Msa0828690:CDS | 50.0% |
| TGGGACATAACGAAGAGGAG+AGG | + | chr5_4:1593693-1593712 | Msa0828690:intron | 50.0% | |
| GGGACATAACGAAGAGGAGA+GGG | + | chr5_4:1593694-1593713 | Msa0828690:intron | 50.0% | |
| AAACTCCAACCGGGTCAAAC+TGG | - | chr5_4:1593739-1593758 | None:intergenic | 50.0% | |
| ! | GTTTGACCCGGTTGGAGTTT+TGG | + | chr5_4:1593739-1593758 | Msa0828690:intron | 50.0% |
| ! | TATCATTGCTGGCTGCACTG+TGG | - | chr5_4:1594154-1594173 | None:intergenic | 50.0% |
| GATTCAACCTCAGTCGTAGG+AGG | - | chr5_4:1594287-1594306 | None:intergenic | 50.0% | |
| AAGCTGGAGACCTGTTCTGA+GGG | - | chr5_4:1593463-1593482 | None:intergenic | 50.0% | |
| AAAGCTGGAGACCTGTTCTG+AGG | - | chr5_4:1593464-1593483 | None:intergenic | 50.0% | |
| ! | AAGGTGCATTGTGGGGTGTT+GGG | - | chr5_4:1593536-1593555 | None:intergenic | 50.0% |
| ! | AAAGGTGCATTGTGGGGTGT+TGG | - | chr5_4:1593537-1593556 | None:intergenic | 50.0% |
| ! | CACCCCACAATGCACCTTTT+TGG | + | chr5_4:1593538-1593557 | Msa0828690:CDS | 50.0% |
| TGGGACATAACGAAGAGGAG+AGG | + | chr5_4:1593693-1593712 | Msa0828690:intron | 50.0% | |
| GGGACATAACGAAGAGGAGA+GGG | + | chr5_4:1593694-1593713 | Msa0828690:intron | 50.0% | |
| AAACTCCAACCGGGTCAAAC+TGG | - | chr5_4:1593739-1593758 | None:intergenic | 50.0% | |
| ! | GTTTGACCCGGTTGGAGTTT+TGG | + | chr5_4:1593739-1593758 | Msa0828690:intron | 50.0% |
| ! | TATCATTGCTGGCTGCACTG+TGG | - | chr5_4:1594154-1594173 | None:intergenic | 50.0% |
| GATTCAACCTCAGTCGTAGG+AGG | - | chr5_4:1594287-1594306 | None:intergenic | 50.0% | |
| GAGTGAGATGCCGAGATCGT+TGG | - | chr5_4:1593498-1593517 | None:intergenic | 55.0% | |
| !! | AGGTGCATTGTGGGGTGTTG+GGG | - | chr5_4:1593535-1593554 | None:intergenic | 55.0% |
| GGTTACCAGTTTGACCCGGT+TGG | + | chr5_4:1593731-1593750 | Msa0828690:intron | 55.0% | |
| CCTAGCTCAAGACGAGCAAG+AGG | - | chr5_4:1593835-1593854 | None:intergenic | 55.0% | |
| CCTCTTGCTCGTCTTGAGCT+AGG | + | chr5_4:1593832-1593851 | Msa0828690:CDS | 55.0% | |
| CAAGCGTGGGAACCGAAAGA+TGG | + | chr5_4:1594214-1594233 | Msa0828690:CDS | 55.0% | |
| GAGCATTCCTCCTACGACTG+AGG | + | chr5_4:1594277-1594296 | Msa0828690:CDS | 55.0% | |
| GAGTGAGATGCCGAGATCGT+TGG | - | chr5_4:1593498-1593517 | None:intergenic | 55.0% | |
| !! | AGGTGCATTGTGGGGTGTTG+GGG | - | chr5_4:1593535-1593554 | None:intergenic | 55.0% |
| GGTTACCAGTTTGACCCGGT+TGG | + | chr5_4:1593731-1593750 | Msa0828690:intron | 55.0% | |
| CCTAGCTCAAGACGAGCAAG+AGG | - | chr5_4:1593835-1593854 | None:intergenic | 55.0% | |
| CCTCTTGCTCGTCTTGAGCT+AGG | + | chr5_4:1593832-1593851 | Msa0828690:CDS | 55.0% | |
| CAAGCGTGGGAACCGAAAGA+TGG | + | chr5_4:1594214-1594233 | Msa0828690:CDS | 55.0% | |
| GAGCATTCCTCCTACGACTG+AGG | + | chr5_4:1594277-1594296 | Msa0828690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 1593407 | 1594349 | 1593407 | ID=Msa0828690;Name=Msa0828690 |
| chr5_4 | mRNA | 1593407 | 1594349 | 1593407 | ID=Msa0828690-mRNA-1;Parent=Msa0828690;Name=Msa0828690-mRNA-1;_AED=0.75;_eAED=0.75;_QI=0|0|0|0.33|1|1|3|0|116 |
| chr5_4 | exon | 1593407 | 1593571 | 1593407 | ID=Msa0828690-mRNA-1:exon:409;Parent=Msa0828690-mRNA-1 |
| chr5_4 | exon | 1593811 | 1593858 | 1593811 | ID=Msa0828690-mRNA-1:exon:410;Parent=Msa0828690-mRNA-1 |
| chr5_4 | exon | 1594212 | 1594349 | 1594212 | ID=Msa0828690-mRNA-1:exon:411;Parent=Msa0828690-mRNA-1 |
| chr5_4 | CDS | 1593407 | 1593571 | 1593407 | ID=Msa0828690-mRNA-1:cds;Parent=Msa0828690-mRNA-1 |
| chr5_4 | CDS | 1593811 | 1593858 | 1593811 | ID=Msa0828690-mRNA-1:cds;Parent=Msa0828690-mRNA-1 |
| chr5_4 | CDS | 1594212 | 1594349 | 1594212 | ID=Msa0828690-mRNA-1:cds;Parent=Msa0828690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
