AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0444750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444750 MtrunA17_Chr3g0084861 100.000 153 0 0 7 159 1 153 4.78e-110 309
Msa0444750 MtrunA17_Chr4g0035481 89.474 152 16 0 7 158 1 152 3.92e-98 279
Msa0444750 MtrunA17_Chr3g0084831 84.559 136 3 1 24 159 6 123 2.43e-75 220
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444750 AT1G17880.1 85.430 151 20 2 1 150 1 150 2.88e-87 253
Msa0444750 AT1G73230.1 85.987 157 21 1 1 156 1 157 1.22e-84 246

Find 72 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAAAATTATGTATTTC+AGG 0.160045 3_3:-18169799 Msa0444750:three_prime_UTR
TAACCTGAAATACATAATTT+TGG 0.178417 3_3:+18169796 None:intergenic
TGAGGAAGTCAACATATTTA+AGG 0.202032 3_3:-18170719 Msa0444750:CDS
TTGGAGGTAGCAATCAATTT+TGG 0.241411 3_3:-18169643 Msa0444750:three_prime_UTR
GGTATTTGTATTCATATATA+TGG 0.273739 3_3:-18169622 Msa0444750:three_prime_UTR
TTGTTCTTGTTGATTCTCTA+TGG 0.280422 3_3:-18169513 Msa0444750:three_prime_UTR
TTGTATGTGTCCACCATTAT+TGG 0.296645 3_3:-18169662 Msa0444750:three_prime_UTR
GTTGCATCAGCTCCTGCTTC+AGG 0.307523 3_3:+18169963 None:intergenic
CATCTATTGCTGCCAATACT+TGG 0.316766 3_3:-18170569 Msa0444750:CDS
ATGTAAATCACATACCTAAT+TGG 0.346928 3_3:+18170111 None:intergenic
CAAAGCACTCTGAAGAGAAT+TGG 0.364468 3_3:-18170763 Msa0444750:CDS
CCCAACATCATTCACCAATT+AGG 0.370291 3_3:-18170125 Msa0444750:intron
TTGATTGCTACCTCCAATAA+TGG 0.372567 3_3:+18169649 None:intergenic
TTTAACAACTTATCTAAAAG+AGG 0.378072 3_3:+18169762 None:intergenic
CGGTACCTTTGATTAGGGTT+AGG 0.384480 3_3:+18172483 None:intergenic
TTGATTCTCTATGGTTATGT+TGG 0.411370 3_3:-18169504 Msa0444750:three_prime_UTR
GTCTCCCCGGGGACAAGATC+TGG 0.417172 3_3:+18169909 None:intergenic
TGTGTAAAACTAAAATGTTA+AGG 0.424673 3_3:-18169572 Msa0444750:three_prime_UTR
AAATGTAGGGCCAGATAACT+TGG 0.425878 3_3:-18170027 Msa0444750:intron
GTGTAAAACTAAAATGTTAA+GGG 0.429007 3_3:-18169571 Msa0444750:three_prime_UTR
TCACTTCGCAATCTGTTCCT+AGG 0.443061 3_3:-18172513 Msa0444750:five_prime_UTR
CAGAAGCAGGCTCCTGAAGC+AGG 0.445075 3_3:-18169975 Msa0444750:CDS
AGCCGAGCAATTTCAGAAGC+AGG 0.452861 3_3:-18169988 Msa0444750:CDS
CCTAATTGGTGAATGATGTT+GGG 0.465851 3_3:+18170125 None:intergenic
AAATATGTTGACTTCCTCAA+TGG 0.472125 3_3:+18170723 None:intergenic
CAAACTCAACAGACAAACTT+AGG 0.477694 3_3:+18169689 None:intergenic
TCCACCGGTTCTAACAGAAC+CGG 0.478108 3_3:+18171157 None:intergenic
GCCAATACTTGGGTTGTTAG+CGG 0.491455 3_3:-18170558 Msa0444750:CDS
CTGAAGAGAATTGGAGTGAA+TGG 0.492121 3_3:-18170754 Msa0444750:CDS
GCTGTACCAGATCTTGTCCC+CGG 0.495159 3_3:-18169915 Msa0444750:CDS
TCTGTTAGAACCGGTGGAAA+GGG 0.501562 3_3:-18171152 Msa0444750:CDS
TTAACAACTTATCTAAAAGA+GGG 0.501737 3_3:+18169763 None:intergenic
ATGTTGACTTCCTCAATGGC+AGG 0.506965 3_3:+18170727 None:intergenic
ACCGCTAACAACCCAAGTAT+TGG 0.513678 3_3:+18170557 None:intergenic
ATCTATTGCTGCCAATACTT+GGG 0.514177 3_3:-18170568 Msa0444750:CDS
GCAGTTTCAAAGGTCTCCCC+GGG 0.516727 3_3:+18169897 None:intergenic
ACCTAATTGGTGAATGATGT+TGG 0.517368 3_3:+18170124 None:intergenic
CTCCTCAGCAGCAGTTTCAA+AGG 0.517897 3_3:+18169887 None:intergenic
CTGTACCAGATCTTGTCCCC+GGG 0.519062 3_3:-18169914 Msa0444750:CDS
TTCTGTTAGAACCGGTGGAA+AGG 0.527490 3_3:-18171153 Msa0444750:CDS
AGCAGTTTCAAAGGTCTCCC+CGG 0.531544 3_3:+18169896 None:intergenic
TGATGCAACCGCAGCACAAG+AGG 0.537196 3_3:-18169949 Msa0444750:CDS
CGAAGTGAAGAAGAACTAAA+CGG 0.538051 3_3:+18172528 None:intergenic
GCCGGTTCTGTTAGAACCGG+TGG 0.539695 3_3:-18171158 Msa0444750:CDS
GTAAATTAATATTACCTTTG+GGG 0.543897 3_3:+18170671 None:intergenic
GACCTTTGAAACTGCTGCTG+AGG 0.544100 3_3:-18169889 Msa0444750:CDS
CTAAACGGTGGAAAGAGATA+AGG 0.553233 3_3:+18172543 None:intergenic
ATGGCCGGTTCTGTTAGAAC+CGG 0.553954 3_3:-18171161 Msa0444750:CDS
AGCCTGCTTCTGAAATTGCT+CGG 0.561723 3_3:+18169986 None:intergenic
TATGTGTCCACCATTATTGG+AGG 0.563863 3_3:-18169659 Msa0444750:three_prime_UTR
CGTCTGTAGTAGCTGTCTTG+TGG 0.564591 3_3:+18170797 None:intergenic
TGTAGAAAAGTTGATGAAGA+TGG 0.565842 3_3:-18171180 Msa0444750:CDS
TCTGACTGTACCCTTTCCAC+CGG 0.575776 3_3:+18171142 None:intergenic
AACTGCTGCTGAGGAGACCA+AGG 0.581530 3_3:-18169880 Msa0444750:CDS
TGTAAAACTAAAATGTTAAG+GGG 0.588717 3_3:-18169570 Msa0444750:three_prime_UTR
TAACAACTTATCTAAAAGAG+GGG 0.589035 3_3:+18169764 None:intergenic
TAGGGTTAGGTTGAGAACCT+AGG 0.593859 3_3:+18172496 None:intergenic
ATCATCGTCCTCTTGTGCTG+CGG 0.603465 3_3:+18169941 None:intergenic
ATTCAGTTTCTAAACCCCAA+AGG 0.603569 3_3:-18170685 Msa0444750:intron
TGTTGACTTCCTCAATGGCA+GGG 0.607118 3_3:+18170728 None:intergenic
GAAAAGTTGATGAAGATGGC+CGG 0.607204 3_3:-18171176 Msa0444750:CDS
CTCAACCTAACCCTAATCAA+AGG 0.612040 3_3:-18172488 Msa0444750:intron
ATATGCTTACTCTTTGTCTG+AGG 0.617486 3_3:+18170531 None:intergenic
GAATGGTATCCCTGCCATTG+AGG 0.621892 3_3:-18170737 Msa0444750:CDS
ATTGCTACCTCCAATAATGG+TGG 0.629552 3_3:+18169652 None:intergenic
GTGGAAAGGGTACAGTCAGA+AGG 0.638872 3_3:-18171139 Msa0444750:intron
CTAATTGGTGAATGATGTTG+GGG 0.645637 3_3:+18170126 None:intergenic
GGCATGACTGAAATGTCAGA+TGG 0.654610 3_3:+18169466 None:intergenic
CGGTGGAAAGAGATAAGGAG+TGG 0.674371 3_3:+18172548 None:intergenic
AGTGAAGAAGAACTAAACGG+TGG 0.718619 3_3:+18172531 None:intergenic
TGTACCAGATCTTGTCCCCG+GGG 0.745014 3_3:-18169913 Msa0444750:CDS
CAGTTTCAAAGGTCTCCCCG+GGG 0.788463 3_3:+18169898 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAATTTTTTTTGAAG+TGG - chr3_3:18169917-18169936 Msa0444750:CDS 10.0%
!! TTATTTAATATTGTTTAGAT+TGG - chr3_3:18170042-18170061 Msa0444750:intron 10.0%
!! ATCATATAAAATAGTATAAA+GGG + chr3_3:18170142-18170161 None:intergenic 10.0%
!! AATCATATAAAATAGTATAA+AGG + chr3_3:18170143-18170162 None:intergenic 10.0%
!!! TTTGATTTCATTTATATTTT+TGG - chr3_3:18170550-18170569 Msa0444750:CDS 10.0%
!! AATTAAATGAAATCAACAAA+GGG + chr3_3:18169717-18169736 None:intergenic 15.0%
!! AAATTAAATGAAATCAACAA+AGG + chr3_3:18169718-18169737 None:intergenic 15.0%
!!! AGTTTTATAGTTAGAATAAT+TGG - chr3_3:18169871-18169890 Msa0444750:exon 15.0%
!! ATTAAATAATACTAAACTAC+TGG + chr3_3:18170031-18170050 None:intergenic 15.0%
!!! GATTTTTTTCAAATTATTAG+CGG + chr3_3:18170233-18170252 None:intergenic 15.0%
!! ATTATAATACAGTAATAAGA+AGG - chr3_3:18170431-18170450 Msa0444750:intron 15.0%
!! ATGATTGTGTAAAAAATATT+TGG - chr3_3:18170471-18170490 Msa0444750:intron 15.0%
!! TTTCCAAAATTAGTATAAAA+AGG + chr3_3:18170657-18170676 None:intergenic 15.0%
!! CTCAAATAAAAAACAATTAT+AGG + chr3_3:18171090-18171109 None:intergenic 15.0%
!!! AATCTTATATTCTTATTTCT+TGG - chr3_3:18171968-18171987 Msa0444750:intron 15.0%
!! TCAAAAAAAATTCGAAACTA+GGG + chr3_3:18169646-18169665 None:intergenic 20.0%
!! ATCAAAAAAAATTCGAAACT+AGG + chr3_3:18169647-18169666 None:intergenic 20.0%
!! AGATTTAGATTATAGATTGT+TGG - chr3_3:18169816-18169835 Msa0444750:three_prime_UTR 20.0%
!! AATAATTGGAGATAGAAAAA+TGG - chr3_3:18169885-18169904 Msa0444750:CDS 20.0%
!!! AATTTTTTTTGAAGTGGAAA+TGG - chr3_3:18169923-18169942 Msa0444750:CDS 20.0%
!!! ATTTTTTTTGAAGTGGAAAT+GGG - chr3_3:18169924-18169943 Msa0444750:CDS 20.0%
!!! ATATTGTTTAGATTGGTTTT+AGG - chr3_3:18170049-18170068 Msa0444750:intron 20.0%
!!! TATTGTTTAGATTGGTTTTA+GGG - chr3_3:18170050-18170069 Msa0444750:intron 20.0%
!! ATAAGAAGGATAAATTATAC+TGG - chr3_3:18170445-18170464 Msa0444750:intron 20.0%
!!! GATTTCATTTATATTTTTGG+TGG - chr3_3:18170553-18170572 Msa0444750:CDS 20.0%
!!! GAACCTTTTTATACTAATTT+TGG - chr3_3:18170651-18170670 Msa0444750:intron 20.0%
!!! TATACTAATTTTGGAAAATC+AGG - chr3_3:18170660-18170679 Msa0444750:intron 20.0%
!!! ATACTAATTTTGGAAAATCA+GGG - chr3_3:18170661-18170680 Msa0444750:intron 20.0%
!! AAATTACTGACAAAAATTAC+AGG + chr3_3:18170697-18170716 None:intergenic 20.0%
!!! TAGTTTTACGAAACAAAAAT+TGG + chr3_3:18171052-18171071 None:intergenic 20.0%
!!! AATTGTTTTTTATTTGAGTG+TGG - chr3_3:18171092-18171111 Msa0444750:intron 20.0%
!! GTAAATTAATATTACCTTTG+GGG + chr3_3:18171352-18171371 None:intergenic 20.0%
!! CGTAAATTAATATTACCTTT+GGG + chr3_3:18171353-18171372 None:intergenic 20.0%
!! TCGTAAATTAATATTACCTT+TGG + chr3_3:18171354-18171373 None:intergenic 20.0%
!!! TGTTTGATAATGTATCATTA+AGG + chr3_3:18171533-18171552 None:intergenic 20.0%
!!! AAATTTTGAACATTCCAATA+TGG + chr3_3:18171720-18171739 None:intergenic 20.0%
!!! TTATTTCTTGGAAAAATGTA+GGG - chr3_3:18171980-18171999 Msa0444750:intron 20.0%
!!! TAACCTGAAATACATAATTT+TGG + chr3_3:18172227-18172246 None:intergenic 20.0%
!! TTAACAACTTATCTAAAAGA+GGG + chr3_3:18172260-18172279 None:intergenic 20.0%
!! TTTAACAACTTATCTAAAAG+AGG + chr3_3:18172261-18172280 None:intergenic 20.0%
!! GGTATTTGTATTCATATATA+TGG - chr3_3:18172398-18172417 Msa0444750:intron 20.0%
!! TGTGTAAAACTAAAATGTTA+AGG - chr3_3:18172448-18172467 Msa0444750:intron 20.0%
!! GTGTAAAACTAAAATGTTAA+GGG - chr3_3:18172449-18172468 Msa0444750:intron 20.0%
!! TGTAAAACTAAAATGTTAAG+GGG - chr3_3:18172450-18172469 Msa0444750:intron 20.0%
! GCGAAATGAATGAATAAAAA+CGG + chr3_3:18169560-18169579 None:intergenic 25.0%
!!! TCTGTTTCGTTTTTCTTATT+CGG - chr3_3:18169592-18169611 Msa0444750:intron 25.0%
!!! TTTTTTTTGAAGTGGAAATG+GGG - chr3_3:18169925-18169944 Msa0444750:CDS 25.0%
! CACACTTTACAATTTCTAAT+TGG + chr3_3:18169969-18169988 None:intergenic 25.0%
! CAATTAGAAATTGTAAAGTG+TGG - chr3_3:18169967-18169986 Msa0444750:CDS 25.0%
! TTGTACGATTAAACATTAAC+TGG + chr3_3:18170597-18170616 None:intergenic 25.0%
! TCATTTATTCATCTGTACAA+AGG - chr3_3:18170753-18170772 Msa0444750:CDS 25.0%
! TGTTTGCAAAGATAAAGATA+AGG + chr3_3:18170982-18171001 None:intergenic 25.0%
! ACTAACTGTTAAACTTGAAT+TGG - chr3_3:18171416-18171435 Msa0444750:intron 25.0%
! GAAATCAGATCAAAATCAAA+AGG + chr3_3:18171814-18171833 None:intergenic 25.0%
! ATGTAAATCACATACCTAAT+TGG + chr3_3:18171912-18171931 None:intergenic 25.0%
!! CTTATTTCTTGGAAAAATGT+AGG - chr3_3:18171979-18171998 Msa0444750:intron 25.0%
! TTGACATCCAAAAATAAAGA+TGG + chr3_3:18172184-18172203 None:intergenic 25.0%
!!! ATAATTTTGGAGGAAAAAAG+AGG + chr3_3:18172214-18172233 None:intergenic 25.0%
! TAACAACTTATCTAAAAGAG+GGG + chr3_3:18172259-18172278 None:intergenic 25.0%
!! AAGTCACCATAACATTTTTA+TGG - chr3_3:18172481-18172500 Msa0444750:intron 25.0%
! CAAGAACCATAAAAATGTTA+TGG + chr3_3:18172490-18172509 None:intergenic 25.0%
AAAAACGGTACCTTTGATTA+GGG + chr3_3:18169545-18169564 None:intergenic 30.0%
TAAAAACGGTACCTTTGATT+AGG + chr3_3:18169546-18169565 None:intergenic 30.0%
TCTTGTTACAACATGCATTT+AGG + chr3_3:18170081-18170100 None:intergenic 30.0%
!!! GCTTTATTTTTAGTAGCAGA+TGG - chr3_3:18170116-18170135 Msa0444750:intron 30.0%
AGGAACAATAAGCTTATACT+CGG + chr3_3:18170180-18170199 None:intergenic 30.0%
TATGTTTACACTGAGATATC+TGG - chr3_3:18170371-18170390 Msa0444750:intron 30.0%
!! ATATCTGGTTCTTTCTTTGA+TGG - chr3_3:18170386-18170405 Msa0444750:intron 30.0%
!! TATCTGGTTCTTTCTTTGAT+GGG - chr3_3:18170387-18170406 Msa0444750:intron 30.0%
TTGGATTCAGTCAATATGAT+AGG - chr3_3:18170490-18170509 Msa0444750:intron 30.0%
!! TGTAGAAAAGTTGATGAAGA+TGG - chr3_3:18170840-18170859 Msa0444750:intron 30.0%
! GTCAGAAGGTATATCATATT+TGG - chr3_3:18170895-18170914 Msa0444750:intron 30.0%
GATTGCTAGTAGTACATTAA+TGG + chr3_3:18170927-18170946 None:intergenic 30.0%
ATTGGAGTTTAAGAGATACA+TGG + chr3_3:18171034-18171053 None:intergenic 30.0%
GTATCAGACAGAAATAATAC+AGG + chr3_3:18171120-18171139 None:intergenic 30.0%
!! AGCCTTCTTCTTTCTAAAAT+GGG + chr3_3:18171201-18171220 None:intergenic 30.0%
!! AAATATGTTGACTTCCTCAA+TGG + chr3_3:18171300-18171319 None:intergenic 30.0%
TGAGGAAGTCAACATATTTA+AGG - chr3_3:18171301-18171320 Msa0444750:intron 30.0%
CATCAATGTTCAGAAATTGT+AGG - chr3_3:18171666-18171685 Msa0444750:intron 30.0%
!! ATTTTGATCTGATTTCATGC+TGG - chr3_3:18171818-18171837 Msa0444750:intron 30.0%
! TTCAGATTTTCCAAGTTATC+TGG + chr3_3:18172006-18172025 None:intergenic 30.0%
!!! TTCTGTGCCATCTTTATTTT+TGG - chr3_3:18172174-18172193 Msa0444750:intron 30.0%
! CCTGAAATACATAATTTTGG+AGG + chr3_3:18172224-18172243 None:intergenic 30.0%
CCTCCAAAATTATGTATTTC+AGG - chr3_3:18172221-18172240 Msa0444750:intron 30.0%
TATATGGTCTAACTTATGTG+TGG - chr3_3:18172414-18172433 Msa0444750:intron 30.0%
!! TTGTTCTTGTTGATTCTCTA+TGG - chr3_3:18172507-18172526 Msa0444750:five_prime_UTR 30.0%
TTGATTCTCTATGGTTATGT+TGG - chr3_3:18172516-18172535 Msa0444750:five_prime_UTR 30.0%
CGAAGTGAAGAAGAACTAAA+CGG + chr3_3:18169495-18169514 None:intergenic 35.0%
TTTCAAATTATTAGCGGTGC+CGG + chr3_3:18170227-18170246 None:intergenic 35.0%
TCAGTGTAAACATACACTGT+AGG + chr3_3:18170365-18170384 None:intergenic 35.0%
!! TGCCCATTTTAGAAAGAAGA+AGG - chr3_3:18171196-18171215 Msa0444750:intron 35.0%
! CAGCCTTCTTCTTTCTAAAA+TGG + chr3_3:18171202-18171221 None:intergenic 35.0%
ATTCAGTTTCTAAACCCCAA+AGG - chr3_3:18171335-18171354 Msa0444750:intron 35.0%
ATCTATTGCTGCCAATACTT+GGG - chr3_3:18171452-18171471 Msa0444750:intron 35.0%
ATATGCTTACTCTTTGTCTG+AGG + chr3_3:18171492-18171511 None:intergenic 35.0%
ATATGGCACACATCATACAA+TGG + chr3_3:18171703-18171722 None:intergenic 35.0%
TTGTATGATGTGTGCCATAT+TGG - chr3_3:18171703-18171722 Msa0444750:intron 35.0%
GATATGAGGAAAACAATGCA+TGG + chr3_3:18171766-18171785 None:intergenic 35.0%
CTAATTGGTGAATGATGTTG+GGG + chr3_3:18171897-18171916 None:intergenic 35.0%
CCTAATTGGTGAATGATGTT+GGG + chr3_3:18171898-18171917 None:intergenic 35.0%
ACCTAATTGGTGAATGATGT+TGG + chr3_3:18171899-18171918 None:intergenic 35.0%
CAAACTCAACAGACAAACTT+AGG + chr3_3:18172334-18172353 None:intergenic 35.0%
TTGTATGTGTCCACCATTAT+TGG - chr3_3:18172358-18172377 Msa0444750:intron 35.0%
TTGATTGCTACCTCCAATAA+TGG + chr3_3:18172374-18172393 None:intergenic 35.0%
! TTGGAGGTAGCAATCAATTT+TGG - chr3_3:18172377-18172396 Msa0444750:intron 35.0%
CTAAACGGTGGAAAGAGATA+AGG + chr3_3:18169480-18169499 None:intergenic 40.0%
AGTGAAGAAGAACTAAACGG+TGG + chr3_3:18169492-18169511 None:intergenic 40.0%
CTCAACCTAACCCTAATCAA+AGG - chr3_3:18169532-18169551 Msa0444750:three_prime_UTR 40.0%
TTGTTCCTACCTATGAAGCA+CGG - chr3_3:18170192-18170211 Msa0444750:intron 40.0%
!! GAAAAGTTGATGAAGATGGC+CGG - chr3_3:18170844-18170863 Msa0444750:intron 40.0%
CAACTGAAACCTTACCACTT+TGG - chr3_3:18171000-18171019 Msa0444750:intron 40.0%
! CAAAGCACTCTGAAGAGAAT+TGG - chr3_3:18171257-18171276 Msa0444750:intron 40.0%
CTGAAGAGAATTGGAGTGAA+TGG - chr3_3:18171266-18171285 Msa0444750:intron 40.0%
CATCTATTGCTGCCAATACT+TGG - chr3_3:18171451-18171470 Msa0444750:intron 40.0%
!! GTGCTGTTTATTTACTCGTG+TGG - chr3_3:18171559-18171578 Msa0444750:intron 40.0%
GAGGAAAACAATGCATGGTA+TGG + chr3_3:18171761-18171780 None:intergenic 40.0%
CAAGTCTCACAATCGATATG+AGG + chr3_3:18171780-18171799 None:intergenic 40.0%
TATCCTGCAACTCTGCAAAA+GGG + chr3_3:18171870-18171889 None:intergenic 40.0%
ATATCCTGCAACTCTGCAAA+AGG + chr3_3:18171871-18171890 None:intergenic 40.0%
CCCAACATCATTCACCAATT+AGG - chr3_3:18171895-18171914 Msa0444750:intron 40.0%
AAATGTAGGGCCAGATAACT+TGG - chr3_3:18171993-18172012 Msa0444750:intron 40.0%
ACAGAAAAACACTCAAGCCT+TGG + chr3_3:18172160-18172179 None:intergenic 40.0%
TATGTGTCCACCATTATTGG+AGG - chr3_3:18172361-18172380 Msa0444750:intron 40.0%
ATTGCTACCTCCAATAATGG+TGG + chr3_3:18172371-18172390 None:intergenic 40.0%
TCACTTCGCAATCTGTTCCT+AGG - chr3_3:18169507-18169526 Msa0444750:three_prime_UTR 45.0%
!! TAGGGTTAGGTTGAGAACCT+AGG + chr3_3:18169527-18169546 None:intergenic 45.0%
CGGTACCTTTGATTAGGGTT+AGG + chr3_3:18169540-18169559 None:intergenic 45.0%
TTCTCCGTAATCACATGCGT+CGG - chr3_3:18170259-18170278 Msa0444750:intron 45.0%
!! TCCTTGGATTAGTAGTGTCC+CGG + chr3_3:18170322-18170341 None:intergenic 45.0%
CTGTAGGAACCTATGAAGCA+CGG + chr3_3:18170349-18170368 None:intergenic 45.0%
TTCTGTTAGAACCGGTGGAA+AGG - chr3_3:18170867-18170886 Msa0444750:intron 45.0%
TCTGTTAGAACCGGTGGAAA+GGG - chr3_3:18170868-18170887 Msa0444750:intron 45.0%
TGAAACCTTACCACTTTGGC+TGG - chr3_3:18171004-18171023 Msa0444750:intron 45.0%
!! TGTTGACTTCCTCAATGGCA+GGG + chr3_3:18171295-18171314 None:intergenic 45.0%
!! ATGTTGACTTCCTCAATGGC+AGG + chr3_3:18171296-18171315 None:intergenic 45.0%
! GCCAATACTTGGGTTGTTAG+CGG - chr3_3:18171462-18171481 Msa0444750:intron 45.0%
ACCGCTAACAACCCAAGTAT+TGG + chr3_3:18171466-18171485 None:intergenic 45.0%
! TTTCCCTTTTGCAGAGTTGC+AGG - chr3_3:18171864-18171883 Msa0444750:intron 45.0%
!! AGCCTGCTTCTGAAATTGCT+CGG + chr3_3:18172037-18172056 None:intergenic 45.0%
!! ATTATTAGCGGTGCCGGTGT+CGG + chr3_3:18170221-18170240 None:intergenic 50.0%
GACACCGACGCATGTGATTA+CGG + chr3_3:18170266-18170285 None:intergenic 50.0%
GATTAGTAGTGTCCCGGTGT+TGG + chr3_3:18170316-18170335 None:intergenic 50.0%
ACCGGGACACTACTAATCCA+AGG - chr3_3:18170318-18170337 Msa0444750:intron 50.0%
TATGAAGCACGGACACTCCT+TGG + chr3_3:18170338-18170357 None:intergenic 50.0%
!! AAGGAGTGTCCGTGCTTCAT+AGG - chr3_3:18170337-18170356 Msa0444750:intron 50.0%
! ATGGCCGGTTCTGTTAGAAC+CGG - chr3_3:18170859-18170878 Msa0444750:intron 50.0%
!! TCCACCGGTTCTAACAGAAC+CGG + chr3_3:18170866-18170885 None:intergenic 50.0%
TCTGACTGTACCCTTTCCAC+CGG + chr3_3:18170881-18170900 None:intergenic 50.0%
! GTGGAAAGGGTACAGTCAGA+AGG - chr3_3:18170881-18170900 Msa0444750:intron 50.0%
GATAGCCAGCCAAAGTGGTA+AGG + chr3_3:18171012-18171031 None:intergenic 50.0%
ACATGGATAGCCAGCCAAAG+TGG + chr3_3:18171017-18171036 None:intergenic 50.0%
CGTCTGTAGTAGCTGTCTTG+TGG + chr3_3:18171226-18171245 None:intergenic 50.0%
GAATGGTATCCCTGCCATTG+AGG - chr3_3:18171283-18171302 Msa0444750:intron 50.0%
AGCCGAGCAATTTCAGAAGC+AGG - chr3_3:18172032-18172051 Msa0444750:intron 50.0%
ATCATCGTCCTCTTGTGCTG+CGG + chr3_3:18172082-18172101 None:intergenic 50.0%
AGCAGTTTCAAAGGTCTCCC+CGG + chr3_3:18172127-18172146 None:intergenic 50.0%
!! GACCTTTGAAACTGCTGCTG+AGG - chr3_3:18172131-18172150 Msa0444750:intron 50.0%
CTCCTCAGCAGCAGTTTCAA+AGG + chr3_3:18172136-18172155 None:intergenic 50.0%
GGTGTCCGTGCTTCATAGGT+AGG + chr3_3:18170200-18170219 None:intergenic 55.0%
! TGTCGGTGTCCGTGCTTCAT+AGG + chr3_3:18170204-18170223 None:intergenic 55.0%
!! GTCGTGTTGGTGTCAGACAC+CGG - chr3_3:18170283-18170302 Msa0444750:intron 55.0%
GTTGCATCAGCTCCTGCTTC+AGG + chr3_3:18172060-18172079 None:intergenic 55.0%
TGATGCAACCGCAGCACAAG+AGG - chr3_3:18172071-18172090 Msa0444750:intron 55.0%
GCTGTACCAGATCTTGTCCC+CGG - chr3_3:18172105-18172124 Msa0444750:intron 55.0%
CTGTACCAGATCTTGTCCCC+GGG - chr3_3:18172106-18172125 Msa0444750:intron 55.0%
TGTACCAGATCTTGTCCCCG+GGG - chr3_3:18172107-18172126 Msa0444750:intron 55.0%
CAGTTTCAAAGGTCTCCCCG+GGG + chr3_3:18172125-18172144 None:intergenic 55.0%
GCAGTTTCAAAGGTCTCCCC+GGG + chr3_3:18172126-18172145 None:intergenic 55.0%
AACTGCTGCTGAGGAGACCA+AGG - chr3_3:18172140-18172159 Msa0444750:intron 55.0%
TGAAGCACGGACACCGACAC+CGG - chr3_3:18170205-18170224 Msa0444750:intron 60.0%
!! CACATGCGTCGGTGTCGTGT+TGG - chr3_3:18170270-18170289 Msa0444750:intron 60.0%
! GCCGGTTCTGTTAGAACCGG+TGG - chr3_3:18170862-18170881 Msa0444750:intron 60.0%
CAGAAGCAGGCTCCTGAAGC+AGG - chr3_3:18172045-18172064 Msa0444750:intron 60.0%
GTCTCCCCGGGGACAAGATC+TGG + chr3_3:18172114-18172133 None:intergenic 65.0%
CACCGGCGCGTGTCCAACAC+CGG - chr3_3:18170300-18170319 Msa0444750:intron 70.0%
ACCGGCGCGTGTCCAACACC+GGG - chr3_3:18170301-18170320 Msa0444750:intron 70.0%
! TCCCGGTGTTGGACACGCGC+CGG + chr3_3:18170305-18170324 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 18169474 18172568 18169474 ID=Msa0444750;Name=Msa0444750
chr3_3 mRNA 18169474 18172568 18169474 ID=Msa0444750-mRNA-1;Parent=Msa0444750;Name=Msa0444750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=80|1|1|1|0.66|0.57|7|381|159
chr3_3 exon 18169474 18169591 18169474 ID=Msa0444750-mRNA-1:exon:3867;Parent=Msa0444750-mRNA-1
chr3_3 exon 18169612 18170041 18169612 ID=Msa0444750-mRNA-1:exon:3866;Parent=Msa0444750-mRNA-1
chr3_3 exon 18170126 18170164 18170126 ID=Msa0444750-mRNA-1:exon:3865;Parent=Msa0444750-mRNA-1
chr3_3 exon 18170541 18170597 18170541 ID=Msa0444750-mRNA-1:exon:3864;Parent=Msa0444750-mRNA-1
chr3_3 exon 18170686 18170834 18170686 ID=Msa0444750-mRNA-1:exon:3863;Parent=Msa0444750-mRNA-1
chr3_3 exon 18171140 18171207 18171140 ID=Msa0444750-mRNA-1:exon:3862;Parent=Msa0444750-mRNA-1
chr3_3 exon 18172489 18172568 18172489 ID=Msa0444750-mRNA-1:exon:3861;Parent=Msa0444750-mRNA-1
chr3_3 five_prime_UTR 18172489 18172568 18172489 ID=Msa0444750-mRNA-1:five_prime_utr;Parent=Msa0444750-mRNA-1
chr3_3 CDS 18171140 18171207 18171140 ID=Msa0444750-mRNA-1:cds;Parent=Msa0444750-mRNA-1
chr3_3 CDS 18170686 18170834 18170686 ID=Msa0444750-mRNA-1:cds;Parent=Msa0444750-mRNA-1
chr3_3 CDS 18170541 18170597 18170541 ID=Msa0444750-mRNA-1:cds;Parent=Msa0444750-mRNA-1
chr3_3 CDS 18170126 18170164 18170126 ID=Msa0444750-mRNA-1:cds;Parent=Msa0444750-mRNA-1
chr3_3 CDS 18169875 18170041 18169875 ID=Msa0444750-mRNA-1:cds;Parent=Msa0444750-mRNA-1
chr3_3 three_prime_UTR 18169612 18169874 18169612 ID=Msa0444750-mRNA-1:three_prime_utr;Parent=Msa0444750-mRNA-1
chr3_3 three_prime_UTR 18169474 18169591 18169474 ID=Msa0444750-mRNA-1:three_prime_utr;Parent=Msa0444750-mRNA-1
Gene Sequence

>Msa0444750

ATGAATGTAGAAAAGTTGATGAAGATGGCCGGTTCTGTTAGAACCGGTGGAAAGGGTACAGTCAGAAGAAAGAAGAAGGCTGTCCACAAGACAGCTACTACAGACGACAAAAGACTTCAAAGCACTCTGAAGAGAATTGGAGTGAATGGTATCCCTGCCATTGAGGAAGTCAACATATTTAAGGATGATGTAGTTATTCAGTTTCTAAACCCCAAAGTACAAGCATCTATTGCTGCCAATACTTGGGTTGTTAGCGGTTCTCCTCAGACAAAGAAGTTGCAGGATATTCTCCCCAACATCATTCACCAATTAGGGCCAGATAACTTGGAAAATCTGAAGAAGTTAGCCGAGCAATTTCAGAAGCAGGCTCCTGAAGCAGGAGCTGATGCAACCGCAGCACAAGAGGACGATGATGATGCTGTACCAGATCTTGTCCCCGGGGAGACCTTTGAAACTGCTGCTGAGGAGACCAAGGCTTGA

Protein sequence

>Msa0444750

MNVEKLMKMAGSVRTGGKGTVRRKKKAVHKTATTDDKRLQSTLKRIGVNGIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPNIIHQLGPDNLENLKKLAEQFQKQAPEAGADATAAQEDDDDAVPDLVPGETFETAAEETKA*