Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397900 | RHN65490.1 | 67.857 | 56 | 13 | 1 | 5 | 55 | 2 | 57 | 2.96e-13 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397900 | A0A396IJW8 | 67.857 | 56 | 13 | 1 | 5 | 55 | 2 | 57 | 1.42e-13 | 76.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0397900 | 0.806793 | 6.922701e-50 | -8.615850e-47 |
| Msa0017510 | Msa0397900 | 0.804264 | 2.348049e-49 | -8.615850e-47 |
| Msa0157290 | Msa0397900 | 0.804208 | 2.412512e-49 | -8.615850e-47 |
| Msa0371730 | Msa0397900 | 0.823039 | 1.716688e-53 | -8.615850e-47 |
| Msa0397900 | Msa0402290 | 0.808791 | 2.603002e-50 | -8.615850e-47 |
| Msa0397900 | Msa0440750 | 0.806400 | 8.377970e-50 | -8.615850e-47 |
| Msa0397900 | Msa0444750 | -0.814495 | 1.496213e-51 | -8.615850e-47 |
| Msa0397900 | Msa0466120 | 0.819194 | 1.320339e-52 | -8.615850e-47 |
| Msa0397900 | Msa0513490 | 0.812705 | 3.705380e-51 | -8.615850e-47 |
| Msa0397900 | Msa0731940 | 0.818006 | 2.455481e-52 | -8.615850e-47 |
| Msa0397900 | Msa0760130 | 0.813488 | 2.495761e-51 | -8.615850e-47 |
| Msa0397900 | Msa0768290 | 0.807490 | 4.928466e-50 | -8.615850e-47 |
| Msa0397900 | Msa0768370 | 0.802263 | 6.094682e-49 | -8.615850e-47 |
| Msa0397900 | Msa0828690 | 0.959740 | 8.922992e-118 | -8.615850e-47 |
| Msa0397900 | Msa0832340 | 0.811535 | 6.669068e-51 | -8.615850e-47 |
| Msa0397900 | Msa0844490 | 0.815405 | 9.400898e-52 | -8.615850e-47 |
| Msa0397900 | Msa0892080 | 0.810976 | 8.815569e-51 | -8.615850e-47 |
| Msa0397900 | Msa0969520 | 0.808121 | 3.618658e-50 | -8.615850e-47 |
| Msa0397900 | Msa0974070 | 0.818519 | 1.878668e-52 | -8.615850e-47 |
| Msa0397900 | Msa1075540 | 0.820950 | 5.231900e-53 | -8.615850e-47 |
| Msa0397900 | Msa1083840 | 0.809821 | 1.565861e-50 | -8.615850e-47 |
| Msa0397900 | Msa1121480 | 0.815506 | 8.928468e-52 | -8.615850e-47 |
| Msa0397900 | Msa1121490 | 0.830172 | 3.409931e-55 | -8.615850e-47 |
| Msa0397900 | Msa1239720 | 0.802531 | 5.366820e-49 | -8.615850e-47 |
| Msa0397900 | Msa1353470 | 0.804488 | 2.108509e-49 | -8.615850e-47 |
| Msa0397900 | Msa1359040 | 0.800442 | 1.438696e-48 | -8.615850e-47 |
| Msa0397900 | Msa1366810 | 0.806112 | 9.637295e-50 | -8.615850e-47 |
| Msa0397900 | Msa1466540 | 0.810359 | 1.198624e-50 | -8.615850e-47 |
| Msa0305190 | Msa0397900 | 0.810166 | 1.319301e-50 | -8.615850e-47 |
| Msa0355220 | Msa0397900 | 0.806523 | 7.894374e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397900 | MtrunA17_Chr3g0080441 | 67.857 | 56 | 13 | 1 | 5 | 55 | 2 | 57 | 2.72e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATCAATTAATTATTT+TGG | 0.141252 | 3_2:+18067127 | None:intergenic |
| TTCAAAGAGGTGATATAGTA+TGG | 0.249719 | 3_2:-18068044 | Msa0397900:CDS |
| AAGGTGCATTGTGGGGTGTT+GGG | 0.335380 | 3_2:+18067931 | None:intergenic |
| AACTTCAGATTCGACCAAAA+AGG | 0.375842 | 3_2:+18067912 | None:intergenic |
| TTGGAAGATGTGAGCAAAGC+TGG | 0.426119 | 3_2:+18067988 | None:intergenic |
| AGGTGCATTGTGGGGTGTTG+GGG | 0.451372 | 3_2:+18067932 | None:intergenic |
| AAAGGTGCATTGTGGGGTGT+TGG | 0.451525 | 3_2:+18067930 | None:intergenic |
| CTCACATCTTCCAACGATCT+CGG | 0.456832 | 3_2:-18067979 | Msa0397900:CDS |
| CCTCTTGCTCGTCTTGAGCT+AGG | 0.469882 | 3_2:-18067632 | Msa0397900:CDS |
| TAATTCACTTCCCTCAGAAC+AGG | 0.474692 | 3_2:-18068014 | Msa0397900:CDS |
| GAGTGAGATGCCGAGATCGT+TGG | 0.518357 | 3_2:+18067969 | None:intergenic |
| AAGCTGGAGACCTGTTCTGA+GGG | 0.557278 | 3_2:+18068004 | None:intergenic |
| CAATTATAGCAGAACAAGCG+TGG | 0.564339 | 3_2:-18067264 | Msa0397900:intron |
| TCTTTGAACATTCCTCGTCA+TGG | 0.566483 | 3_2:+18068059 | None:intergenic |
| CCTAGCTCAAGACGAGCAAG+AGG | 0.574921 | 3_2:+18067632 | None:intergenic |
| CAAGCGTGGGAACCGAAAGA+TGG | 0.582509 | 3_2:-18067250 | Msa0397900:CDS |
| AAAGCTGGAGACCTGTTCTG+AGG | 0.589143 | 3_2:+18068003 | None:intergenic |
| GATTCAACCTCAGTCGTAGG+AGG | 0.605163 | 3_2:+18067180 | None:intergenic |
| GAGCATTCCTCCTACGACTG+AGG | 0.605605 | 3_2:-18067187 | Msa0397900:CDS |
| TCAAAGAGGTGATATAGTAT+GGG | 0.609657 | 3_2:-18068043 | Msa0397900:CDS |
| TCAGATTCAACCTCAGTCGT+AGG | 0.616826 | 3_2:+18067177 | None:intergenic |
| AATTATAGCAGAACAAGCGT+GGG | 0.679794 | 3_2:-18067263 | Msa0397900:intron |
| ATGACGAGGAATGTTCAAAG+AGG | 0.692384 | 3_2:-18068057 | Msa0397900:CDS |
| AAACAGACATAACCATGACG+AGG | 0.720821 | 3_2:-18068071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTCTTCTTTTTTGAAA+CGG | + | chr3_2:18067610-18067629 | None:intergenic | 20.0% |
| !!! | GATTTTCTTCTTTTTTGAAA+CGG | + | chr3_2:18067610-18067629 | None:intergenic | 20.0% |
| !!! | TTATTTGCTGTCTTTTTTAG+TGG | + | chr3_2:18067668-18067687 | None:intergenic | 25.0% |
| !! | TTGCATTTTATTATCATTGC+TGG | + | chr3_2:18067895-18067914 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATGAATTCAGAC+TGG | + | chr3_2:18067986-18068005 | None:intergenic | 25.0% |
| !!! | TTATTTGCTGTCTTTTTTAG+TGG | + | chr3_2:18067668-18067687 | None:intergenic | 25.0% |
| !! | TTGCATTTTATTATCATTGC+TGG | + | chr3_2:18067895-18067914 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATGAATTCAGAC+TGG | + | chr3_2:18067986-18068005 | None:intergenic | 25.0% |
| TTCAAAGAGGTGATATAGTA+TGG | - | chr3_2:18067150-18067169 | Msa0397900:CDS | 30.0% | |
| TCAAAGAGGTGATATAGTAT+GGG | - | chr3_2:18067151-18067170 | Msa0397900:CDS | 30.0% | |
| TGAAAGGGTGATTTATTGAA+GGG | + | chr3_2:18067311-18067330 | None:intergenic | 30.0% | |
| TTGAAAGGGTGATTTATTGA+AGG | + | chr3_2:18067312-18067331 | None:intergenic | 30.0% | |
| ATAACTATAAACGAGCAGAA+TGG | + | chr3_2:18067361-18067380 | None:intergenic | 30.0% | |
| !!! | TATTTTGATATGGTGGTGAA+TGG | + | chr3_2:18067809-18067828 | None:intergenic | 30.0% |
| !!! | TGTTTGGTATTTTGATATGG+TGG | + | chr3_2:18067816-18067835 | None:intergenic | 30.0% |
| !!! | CTCTGTTTGGTATTTTGATA+TGG | + | chr3_2:18067819-18067838 | None:intergenic | 30.0% |
| !!! | TTTTGGCTTGTTATTTCTGT+AGG | + | chr3_2:18068053-18068072 | None:intergenic | 30.0% |
| TTCAAAGAGGTGATATAGTA+TGG | - | chr3_2:18067150-18067169 | Msa0397900:CDS | 30.0% | |
| TCAAAGAGGTGATATAGTAT+GGG | - | chr3_2:18067151-18067170 | Msa0397900:CDS | 30.0% | |
| TGAAAGGGTGATTTATTGAA+GGG | + | chr3_2:18067311-18067330 | None:intergenic | 30.0% | |
| TTGAAAGGGTGATTTATTGA+AGG | + | chr3_2:18067312-18067331 | None:intergenic | 30.0% | |
| ATAACTATAAACGAGCAGAA+TGG | + | chr3_2:18067361-18067380 | None:intergenic | 30.0% | |
| !!! | TATTTTGATATGGTGGTGAA+TGG | + | chr3_2:18067809-18067828 | None:intergenic | 30.0% |
| !!! | TGTTTGGTATTTTGATATGG+TGG | + | chr3_2:18067816-18067835 | None:intergenic | 30.0% |
| !!! | CTCTGTTTGGTATTTTGATA+TGG | + | chr3_2:18067819-18067838 | None:intergenic | 30.0% |
| !!! | TTTTGGCTTGTTATTTCTGT+AGG | + | chr3_2:18068053-18068072 | None:intergenic | 30.0% |
| AACTTCAGATTCGACCAAAA+AGG | + | chr3_2:18067285-18067304 | None:intergenic | 35.0% | |
| GAAAGGGTGATTTATTGAAG+GGG | + | chr3_2:18067310-18067329 | None:intergenic | 35.0% | |
| !!! | TGAATGGTGTCGTTTTGAAA+GGG | + | chr3_2:18067326-18067345 | None:intergenic | 35.0% |
| !!! | TTGAATGGTGTCGTTTTGAA+AGG | + | chr3_2:18067327-18067346 | None:intergenic | 35.0% |
| ATGGAATGCTTCACATTGAA+TGG | + | chr3_2:18067342-18067361 | None:intergenic | 35.0% | |
| ! | TTTACAGTGTCGCTGTATAA+TGG | - | chr3_2:18067403-18067422 | Msa0397900:intron | 35.0% |
| ! | TTACAGTGTCGCTGTATAAT+GGG | - | chr3_2:18067404-18067423 | Msa0397900:intron | 35.0% |
| ! | TATAATGGGACATAACGAAG+AGG | - | chr3_2:18067418-18067437 | Msa0397900:intron | 35.0% |
| ! | TTGTTGTAGCAGTGTGTTTT+TGG | - | chr3_2:18067506-18067525 | Msa0397900:intron | 35.0% |
| !!! | TAGCAGTGTGTTTTTGGTTT+TGG | - | chr3_2:18067512-18067531 | Msa0397900:intron | 35.0% |
| ! | CTAGTTATGTTGGTTAGATG+TGG | + | chr3_2:18067716-18067735 | None:intergenic | 35.0% |
| CACATCTAACCAACATAACT+AGG | - | chr3_2:18067714-18067733 | Msa0397900:intron | 35.0% | |
| !!! | CTAGTTTTGCCTAGTTATGT+TGG | + | chr3_2:18067726-18067745 | None:intergenic | 35.0% |
| CAACATAACTAGGCAAAACT+AGG | - | chr3_2:18067724-18067743 | Msa0397900:intron | 35.0% | |
| AAAAGACCACTAAGATAGCA+AGG | - | chr3_2:18067754-18067773 | Msa0397900:intron | 35.0% | |
| ! | TGGAGAATGTTGTGTCATTA+TGG | + | chr3_2:18067789-18067808 | None:intergenic | 35.0% |
| !! | TTTGTTTAGCTCTCTCTGTT+TGG | + | chr3_2:18067832-18067851 | None:intergenic | 35.0% |
| AATTATAGCAGAACAAGCGT+GGG | - | chr3_2:18067931-18067950 | Msa0397900:CDS | 35.0% | |
| !! | TCTGTTTTTCAGCCATCTTT+CGG | + | chr3_2:18067959-18067978 | None:intergenic | 35.0% |
| AACTTCAGATTCGACCAAAA+AGG | + | chr3_2:18067285-18067304 | None:intergenic | 35.0% | |
| GAAAGGGTGATTTATTGAAG+GGG | + | chr3_2:18067310-18067329 | None:intergenic | 35.0% | |
| !!! | TGAATGGTGTCGTTTTGAAA+GGG | + | chr3_2:18067326-18067345 | None:intergenic | 35.0% |
| !!! | TTGAATGGTGTCGTTTTGAA+AGG | + | chr3_2:18067327-18067346 | None:intergenic | 35.0% |
| ATGGAATGCTTCACATTGAA+TGG | + | chr3_2:18067342-18067361 | None:intergenic | 35.0% | |
| ! | TTTACAGTGTCGCTGTATAA+TGG | - | chr3_2:18067403-18067422 | Msa0397900:intron | 35.0% |
| ! | TTACAGTGTCGCTGTATAAT+GGG | - | chr3_2:18067404-18067423 | Msa0397900:intron | 35.0% |
| ! | TATAATGGGACATAACGAAG+AGG | - | chr3_2:18067418-18067437 | Msa0397900:intron | 35.0% |
| ! | TTGTTGTAGCAGTGTGTTTT+TGG | - | chr3_2:18067506-18067525 | Msa0397900:intron | 35.0% |
| !!! | TAGCAGTGTGTTTTTGGTTT+TGG | - | chr3_2:18067512-18067531 | Msa0397900:intron | 35.0% |
| ! | CTAGTTATGTTGGTTAGATG+TGG | + | chr3_2:18067716-18067735 | None:intergenic | 35.0% |
| CACATCTAACCAACATAACT+AGG | - | chr3_2:18067714-18067733 | Msa0397900:intron | 35.0% | |
| !!! | CTAGTTTTGCCTAGTTATGT+TGG | + | chr3_2:18067726-18067745 | None:intergenic | 35.0% |
| CAACATAACTAGGCAAAACT+AGG | - | chr3_2:18067724-18067743 | Msa0397900:intron | 35.0% | |
| AAAAGACCACTAAGATAGCA+AGG | - | chr3_2:18067754-18067773 | Msa0397900:intron | 35.0% | |
| ! | TGGAGAATGTTGTGTCATTA+TGG | + | chr3_2:18067789-18067808 | None:intergenic | 35.0% |
| !! | TTTGTTTAGCTCTCTCTGTT+TGG | + | chr3_2:18067832-18067851 | None:intergenic | 35.0% |
| AATTATAGCAGAACAAGCGT+GGG | - | chr3_2:18067931-18067950 | Msa0397900:CDS | 35.0% | |
| !! | TCTGTTTTTCAGCCATCTTT+CGG | + | chr3_2:18067959-18067978 | None:intergenic | 35.0% |
| ATGACGAGGAATGTTCAAAG+AGG | - | chr3_2:18067137-18067156 | Msa0397900:CDS | 40.0% | |
| TAATTCACTTCCCTCAGAAC+AGG | - | chr3_2:18067180-18067199 | Msa0397900:CDS | 40.0% | |
| !!! | GAAGAGGAGAGGGTTTTAAA+TGG | - | chr3_2:18067434-18067453 | Msa0397900:intron | 40.0% |
| !!! | GAGAGGGTTTTAAATGGTTC+AGG | - | chr3_2:18067440-18067459 | Msa0397900:intron | 40.0% |
| !!! | CAGTGTGTTTTTGGTTTTGG+TGG | - | chr3_2:18067515-18067534 | Msa0397900:intron | 40.0% |
| !! | TGTTAGCCTTGCTATCTTAG+TGG | + | chr3_2:18067763-18067782 | None:intergenic | 40.0% |
| CACGCTTGTTCTGCTATAAT+TGG | + | chr3_2:18067932-18067951 | None:intergenic | 40.0% | |
| CAATTATAGCAGAACAAGCG+TGG | - | chr3_2:18067930-18067949 | Msa0397900:CDS | 40.0% | |
| ATGACGAGGAATGTTCAAAG+AGG | - | chr3_2:18067137-18067156 | Msa0397900:CDS | 40.0% | |
| TAATTCACTTCCCTCAGAAC+AGG | - | chr3_2:18067180-18067199 | Msa0397900:CDS | 40.0% | |
| !!! | GAAGAGGAGAGGGTTTTAAA+TGG | - | chr3_2:18067434-18067453 | Msa0397900:intron | 40.0% |
| !!! | GAGAGGGTTTTAAATGGTTC+AGG | - | chr3_2:18067440-18067459 | Msa0397900:intron | 40.0% |
| !!! | CAGTGTGTTTTTGGTTTTGG+TGG | - | chr3_2:18067515-18067534 | Msa0397900:intron | 40.0% |
| !! | TGTTAGCCTTGCTATCTTAG+TGG | + | chr3_2:18067763-18067782 | None:intergenic | 40.0% |
| CACGCTTGTTCTGCTATAAT+TGG | + | chr3_2:18067932-18067951 | None:intergenic | 40.0% | |
| CAATTATAGCAGAACAAGCG+TGG | - | chr3_2:18067930-18067949 | Msa0397900:CDS | 40.0% | |
| TTGGAAGATGTGAGCAAAGC+TGG | + | chr3_2:18067209-18067228 | None:intergenic | 45.0% | |
| CTCACATCTTCCAACGATCT+CGG | - | chr3_2:18067215-18067234 | Msa0397900:CDS | 45.0% | |
| ! | GACCAAAAAGGTGCATTGTG+GGG | + | chr3_2:18067273-18067292 | None:intergenic | 45.0% |
| ! | CGACCAAAAAGGTGCATTGT+GGG | + | chr3_2:18067274-18067293 | None:intergenic | 45.0% |
| ! | TCGACCAAAAAGGTGCATTG+TGG | + | chr3_2:18067275-18067294 | None:intergenic | 45.0% |
| ! | TTCAGGTTACCAGTTTGACC+CGG | - | chr3_2:18067457-18067476 | Msa0397900:intron | 45.0% |
| ! | TTTGACCCGGTTGGAGTTTT+GGG | - | chr3_2:18067470-18067489 | Msa0397900:intron | 45.0% |
| TGATACCCAAAACTCCAACC+GGG | + | chr3_2:18067478-18067497 | None:intergenic | 45.0% | |
| CTGATACCCAAAACTCCAAC+CGG | + | chr3_2:18067479-18067498 | None:intergenic | 45.0% | |
| !!! | GTGTTTTTGGTTTTGGTGGC+AGG | - | chr3_2:18067519-18067538 | Msa0397900:intron | 45.0% |
| GTGGCTGTATGACAGTTAGT+AGG | + | chr3_2:18067865-18067884 | None:intergenic | 45.0% | |
| TCAGATTCAACCTCAGTCGT+AGG | + | chr3_2:18068020-18068039 | None:intergenic | 45.0% | |
| TTGGAAGATGTGAGCAAAGC+TGG | + | chr3_2:18067209-18067228 | None:intergenic | 45.0% | |
| CTCACATCTTCCAACGATCT+CGG | - | chr3_2:18067215-18067234 | Msa0397900:CDS | 45.0% | |
| ! | GACCAAAAAGGTGCATTGTG+GGG | + | chr3_2:18067273-18067292 | None:intergenic | 45.0% |
| ! | CGACCAAAAAGGTGCATTGT+GGG | + | chr3_2:18067274-18067293 | None:intergenic | 45.0% |
| ! | TCGACCAAAAAGGTGCATTG+TGG | + | chr3_2:18067275-18067294 | None:intergenic | 45.0% |
| ! | TTCAGGTTACCAGTTTGACC+CGG | - | chr3_2:18067457-18067476 | Msa0397900:intron | 45.0% |
| ! | TTTGACCCGGTTGGAGTTTT+GGG | - | chr3_2:18067470-18067489 | Msa0397900:intron | 45.0% |
| TGATACCCAAAACTCCAACC+GGG | + | chr3_2:18067478-18067497 | None:intergenic | 45.0% | |
| CTGATACCCAAAACTCCAAC+CGG | + | chr3_2:18067479-18067498 | None:intergenic | 45.0% | |
| !!! | GTGTTTTTGGTTTTGGTGGC+AGG | - | chr3_2:18067519-18067538 | Msa0397900:intron | 45.0% |
| GTGGCTGTATGACAGTTAGT+AGG | + | chr3_2:18067865-18067884 | None:intergenic | 45.0% | |
| TCAGATTCAACCTCAGTCGT+AGG | + | chr3_2:18068020-18068039 | None:intergenic | 45.0% | |
| AAGCTGGAGACCTGTTCTGA+GGG | + | chr3_2:18067193-18067212 | None:intergenic | 50.0% | |
| AAAGCTGGAGACCTGTTCTG+AGG | + | chr3_2:18067194-18067213 | None:intergenic | 50.0% | |
| ! | AAGGTGCATTGTGGGGTGTT+GGG | + | chr3_2:18067266-18067285 | None:intergenic | 50.0% |
| ! | AAAGGTGCATTGTGGGGTGT+TGG | + | chr3_2:18067267-18067286 | None:intergenic | 50.0% |
| ! | CACCCCACAATGCACCTTTT+TGG | - | chr3_2:18067268-18067287 | Msa0397900:intron | 50.0% |
| TGGGACATAACGAAGAGGAG+AGG | - | chr3_2:18067423-18067442 | Msa0397900:intron | 50.0% | |
| GGGACATAACGAAGAGGAGA+GGG | - | chr3_2:18067424-18067443 | Msa0397900:intron | 50.0% | |
| AAACTCCAACCGGGTCAAAC+TGG | + | chr3_2:18067469-18067488 | None:intergenic | 50.0% | |
| ! | GTTTGACCCGGTTGGAGTTT+TGG | - | chr3_2:18067469-18067488 | Msa0397900:intron | 50.0% |
| ! | TATCATTGCTGGCTGCACTG+TGG | + | chr3_2:18067884-18067903 | None:intergenic | 50.0% |
| GATTCAACCTCAGTCGTAGG+AGG | + | chr3_2:18068017-18068036 | None:intergenic | 50.0% | |
| AAGCTGGAGACCTGTTCTGA+GGG | + | chr3_2:18067193-18067212 | None:intergenic | 50.0% | |
| AAAGCTGGAGACCTGTTCTG+AGG | + | chr3_2:18067194-18067213 | None:intergenic | 50.0% | |
| ! | AAGGTGCATTGTGGGGTGTT+GGG | + | chr3_2:18067266-18067285 | None:intergenic | 50.0% |
| ! | AAAGGTGCATTGTGGGGTGT+TGG | + | chr3_2:18067267-18067286 | None:intergenic | 50.0% |
| ! | CACCCCACAATGCACCTTTT+TGG | - | chr3_2:18067268-18067287 | Msa0397900:intron | 50.0% |
| TGGGACATAACGAAGAGGAG+AGG | - | chr3_2:18067423-18067442 | Msa0397900:intron | 50.0% | |
| GGGACATAACGAAGAGGAGA+GGG | - | chr3_2:18067424-18067443 | Msa0397900:intron | 50.0% | |
| AAACTCCAACCGGGTCAAAC+TGG | + | chr3_2:18067469-18067488 | None:intergenic | 50.0% | |
| ! | GTTTGACCCGGTTGGAGTTT+TGG | - | chr3_2:18067469-18067488 | Msa0397900:intron | 50.0% |
| ! | TATCATTGCTGGCTGCACTG+TGG | + | chr3_2:18067884-18067903 | None:intergenic | 50.0% |
| GATTCAACCTCAGTCGTAGG+AGG | + | chr3_2:18068017-18068036 | None:intergenic | 50.0% | |
| GAGTGAGATGCCGAGATCGT+TGG | + | chr3_2:18067228-18067247 | None:intergenic | 55.0% | |
| !! | AGGTGCATTGTGGGGTGTTG+GGG | + | chr3_2:18067265-18067284 | None:intergenic | 55.0% |
| GGTTACCAGTTTGACCCGGT+TGG | - | chr3_2:18067461-18067480 | Msa0397900:intron | 55.0% | |
| CCTAGCTCAAGACGAGCAAG+AGG | + | chr3_2:18067565-18067584 | None:intergenic | 55.0% | |
| CCTCTTGCTCGTCTTGAGCT+AGG | - | chr3_2:18067562-18067581 | Msa0397900:intron | 55.0% | |
| CAAGCGTGGGAACCGAAAGA+TGG | - | chr3_2:18067944-18067963 | Msa0397900:CDS | 55.0% | |
| GAGCATTCCTCCTACGACTG+AGG | - | chr3_2:18068007-18068026 | Msa0397900:CDS | 55.0% | |
| GAGTGAGATGCCGAGATCGT+TGG | + | chr3_2:18067228-18067247 | None:intergenic | 55.0% | |
| !! | AGGTGCATTGTGGGGTGTTG+GGG | + | chr3_2:18067265-18067284 | None:intergenic | 55.0% |
| GGTTACCAGTTTGACCCGGT+TGG | - | chr3_2:18067461-18067480 | Msa0397900:intron | 55.0% | |
| CCTAGCTCAAGACGAGCAAG+AGG | + | chr3_2:18067565-18067584 | None:intergenic | 55.0% | |
| CCTCTTGCTCGTCTTGAGCT+AGG | - | chr3_2:18067562-18067581 | Msa0397900:intron | 55.0% | |
| CAAGCGTGGGAACCGAAAGA+TGG | - | chr3_2:18067944-18067963 | Msa0397900:CDS | 55.0% | |
| GAGCATTCCTCCTACGACTG+AGG | - | chr3_2:18068007-18068026 | Msa0397900:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 18067137 | 18068079 | 18067137 | ID=Msa0397900;Name=Msa0397900 |
| chr3_2 | mRNA | 18067137 | 18068079 | 18067137 | ID=Msa0397900-mRNA-1;Parent=Msa0397900;Name=Msa0397900-mRNA-1;_AED=0.75;_eAED=0.76;_QI=0|0|0|0.33|1|1|3|0|116 |
| chr3_2 | exon | 18067915 | 18068079 | 18067915 | ID=Msa0397900-mRNA-1:exon:4046;Parent=Msa0397900-mRNA-1 |
| chr3_2 | exon | 18067628 | 18067675 | 18067628 | ID=Msa0397900-mRNA-1:exon:4045;Parent=Msa0397900-mRNA-1 |
| chr3_2 | exon | 18067137 | 18067274 | 18067137 | ID=Msa0397900-mRNA-1:exon:4044;Parent=Msa0397900-mRNA-1 |
| chr3_2 | CDS | 18067915 | 18068079 | 18067915 | ID=Msa0397900-mRNA-1:cds;Parent=Msa0397900-mRNA-1 |
| chr3_2 | CDS | 18067628 | 18067675 | 18067628 | ID=Msa0397900-mRNA-1:cds;Parent=Msa0397900-mRNA-1 |
| chr3_2 | CDS | 18067137 | 18067274 | 18067137 | ID=Msa0397900-mRNA-1:cds;Parent=Msa0397900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
