AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832030 MtrunA17_Chr4g0014311 34.959 123 63 2 108 213 132 254 1.70e-13 69.3
Msa0832030 MtrunA17_Chr7g0270411 37.624 101 60 2 116 214 1 100 1.47e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 90 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCCAACCTTTATCGTAAT+TGG 0.190441 5_4:+5131115 Msa0832030:CDS
TTTCTCAATCAATTGAATTA+TGG 0.220514 5_4:+5132052 Msa0832030:three_prime_UTR
AACTCCAACTAGCAAATCTT+TGG 0.260602 5_4:+5131707 Msa0832030:CDS
TCTCATTCTTATTACCTTGA+TGG 0.273691 5_4:+5131029 Msa0832030:CDS
CTTGAAAGATTATCGAGTTT+TGG 0.287971 5_4:+5131840 Msa0832030:three_prime_UTR
ACTTTCTGAGAATTGTTATA+GGG 0.300909 5_4:+5127467 Msa0832030:five_prime_UTR
TCATTGCATGTTGCTTCAAT+TGG 0.303065 5_4:-5126841 None:intergenic
AAGCAGCAAAAGAGCTTAAC+TGG 0.304895 5_4:+5128057 Msa0832030:CDS
GTTTCCGTTAATGATTGTTT+TGG 0.312248 5_4:+5132007 Msa0832030:three_prime_UTR
CACTTTCTGAGAATTGTTAT+AGG 0.327100 5_4:+5127466 Msa0832030:five_prime_UTR
CATTGCATGTTGCTTCAATT+GGG 0.333919 5_4:-5126840 None:intergenic
CTCTCATCAGCCTTTACAAT+TGG 0.349015 5_4:-5127996 None:intergenic
TTACCTTCTGATTGTAAATC+CGG 0.382651 5_4:-5127309 None:intergenic
CGAAGTTGCTGCTGCTGATT+CGG 0.386996 5_4:+5131524 Msa0832030:CDS
TCAAATGATGGTTCAGGAAC+TGG 0.397688 5_4:+5130979 Msa0832030:CDS
AATTCCAAAACAATCATTAA+CGG 0.403566 5_4:-5132011 None:intergenic
GCCTAAGCTTGTGCGTGTTA+AGG 0.403824 5_4:+5131795 Msa0832030:exon
GACTCCAACTAGCAAACCTT+TGG 0.409498 5_4:+5131551 Msa0832030:CDS
GTTGTTTACATAGGTTGGTC+AGG 0.410633 5_4:+5130373 Msa0832030:intron
TGCGGCAACATCATCTTTGT+TGG 0.415154 5_4:-5131670 None:intergenic
TGAGAGTGAGGGAGAGAAGT+AGG 0.416451 5_4:-5126772 None:intergenic
GGGACGAGAGAAACGGGAAC+AGG 0.429056 5_4:+5126587 Msa0832030:five_prime_UTR
CGGGAACAGGAGAGGAAGAA+GGG 0.440770 5_4:+5126600 Msa0832030:five_prime_UTR
TGACTGAGGAAATAATTAAT+CGG 0.442440 5_4:+5131166 Msa0832030:CDS
TAGGTTTGTTGAGTTAATTA+AGG 0.445154 5_4:+5129186 Msa0832030:CDS
GAGCACTCAAATGATGGTTC+AGG 0.447112 5_4:+5130973 Msa0832030:CDS
ACGGGAACAGGAGAGGAAGA+AGG 0.451499 5_4:+5126599 Msa0832030:five_prime_UTR
TTAGAAAATTCCAATTGTAA+AGG 0.455191 5_4:+5127986 Msa0832030:intron
AGAAGGAAAGGCTGAGAGTG+AGG 0.457126 5_4:-5126784 None:intergenic
CAGAAAGAACGGCAGAGGAG+AGG 0.458020 5_4:+5126629 Msa0832030:five_prime_UTR
TTTCCCAAAGATTTGCTAGT+TGG 0.458073 5_4:-5131711 None:intergenic
GGAATTCGCTTCCGCCGCTC+CGG 0.459262 5_4:+5127290 Msa0832030:five_prime_UTR
AGCTGCGCCAATTACGATAA+AGG 0.462212 5_4:-5131122 None:intergenic
CAAATCTGCAGAATTGTAGA+TGG 0.462252 5_4:+5127253 Msa0832030:five_prime_UTR
ATCGTTGAGCACTCAAATGA+TGG 0.463132 5_4:+5130967 Msa0832030:CDS
ACTCCAACTAGCAAATCTTT+GGG 0.471644 5_4:+5131708 Msa0832030:CDS
GGGAACAGGAGAGGAAGAAG+GGG 0.472264 5_4:+5126601 Msa0832030:five_prime_UTR
AGTGATTAGAAGCATAATCA+AGG 0.477232 5_4:+5126882 Msa0832030:five_prime_UTR
AGAAAGAACGGCAGAGGAGA+GGG 0.477733 5_4:+5126630 Msa0832030:five_prime_UTR
GTAGATGGTCTTGCTGTTTG+AGG 0.482977 5_4:+5127268 Msa0832030:five_prime_UTR
ATTAATTATTTCCTCAGTCA+TGG 0.483885 5_4:-5131163 None:intergenic
GCTCAACTCATTAGTAGTAA+TGG 0.498019 5_4:+5129163 Msa0832030:CDS
GTTGTTGTGCATAGTTCTGA+TGG 0.499773 5_4:+5131612 Msa0832030:CDS
TAGATGGTCTTGCTGTTTGA+GGG 0.500661 5_4:+5127269 Msa0832030:five_prime_UTR
TTTCCCAAAGGTTTGCTAGT+TGG 0.503027 5_4:-5131555 None:intergenic
AAATGAAAGGACAACGGACT+TGG 0.508520 5_4:-5131878 None:intergenic
ATGATAATTGCTAACCATCA+AGG 0.517087 5_4:-5131043 None:intergenic
TCCAACACTCCGATCTGCAC+TGG 0.517110 5_4:+5126681 Msa0832030:five_prime_UTR
ACTCCAACTAGCAAACCTTT+GGG 0.520423 5_4:+5131552 Msa0832030:CDS
GGGGAGGTTGAAGAATTAAA+GGG 0.520644 5_4:-5126819 None:intergenic
TGCTACAAAAGAGCTAAAGC+TGG 0.538283 5_4:+5131638 Msa0832030:CDS
GAAGGAAAGGCTGAGAGTGA+GGG 0.541277 5_4:-5126783 None:intergenic
ATTGCATGTTGCTTCAATTG+GGG 0.544114 5_4:-5126839 None:intergenic
ACCTTAACACGCACAAGCTT+AGG 0.546106 5_4:-5131796 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.546335 5_4:-5126666 None:intergenic
ACCAGTGCAGATCGGAGTGT+TGG 0.547707 5_4:-5126682 None:intergenic
TTGCATGTTGCTTCAATTGG+GGG 0.548668 5_4:-5126838 None:intergenic
GACGACAGAAAGAACGGCAG+AGG 0.561400 5_4:+5126624 Msa0832030:five_prime_UTR
TAAACAACTTCAGCATCTCT+AGG 0.562490 5_4:-5128020 None:intergenic
AAGGGTCTGATGTAGAAAGA+AGG 0.565269 5_4:-5126801 None:intergenic
TTTCAAGAGACTTCACTCAT+CGG 0.565680 5_4:-5131824 None:intergenic
CTTTCTGAGAATTGTTATAG+GGG 0.565811 5_4:+5127468 Msa0832030:five_prime_UTR
ATAGGTTGGTCAGGATGTTG+TGG 0.569173 5_4:+5130382 Msa0832030:intron
TTTGGACCTCCATGGGACAT+CGG 0.574097 5_4:+5131191 Msa0832030:CDS
TCTAATCACTTAAAGCATGT+AGG 0.575251 5_4:-5126869 None:intergenic
CTAGCAAACCTTTGGGAAAG+CGG 0.578566 5_4:+5131559 Msa0832030:CDS
GAGAGAAACGGGAACAGGAG+AGG 0.581940 5_4:+5126592 Msa0832030:five_prime_UTR
GCGCCAATTACGATAAAGGT+TGG 0.582465 5_4:-5131118 None:intergenic
TCAGTAGACCGCTTTCCCAA+AGG 0.587701 5_4:-5131567 None:intergenic
GAGTGAGGGAGAGAAGTAGG+AGG 0.589607 5_4:-5126769 None:intergenic
AAATCAAAACCAGTGCAGAT+CGG 0.601823 5_4:-5126690 None:intergenic
GATCGGAGTGTTGGACGGCG+AGG 0.614383 5_4:-5126673 None:intergenic
AAAGCGGTCTACTGATAGTG+TGG 0.622760 5_4:+5131575 Msa0832030:CDS
GGAACAGGAGAGGAAGAAGG+GGG 0.626538 5_4:+5126602 Msa0832030:five_prime_UTR
AACTCATTAGTAGTAATGGT+AGG 0.633936 5_4:+5129167 Msa0832030:CDS
CATATGTTTCTGTAAGTGAG+AGG 0.636244 5_4:-5126743 None:intergenic
GCTCCGGATTTACAATCAGA+AGG 0.636839 5_4:+5127306 Msa0832030:five_prime_UTR
AGTGAGGGAGAGAAGTAGGA+GGG 0.638656 5_4:-5126768 None:intergenic
GTGCAGATCGGAGTGTTGGA+CGG 0.639439 5_4:-5126678 None:intergenic
TCTGATGTAGAAAGAAGGAA+AGG 0.652049 5_4:-5126796 None:intergenic
AGAAAAGCAATTGAGAAACA+AGG 0.655094 5_4:+5130413 Msa0832030:CDS
CATGCAGGAAAATATTGAAG+TGG 0.661188 5_4:+5131482 Msa0832030:intron
TGGTTCAGGAACTGGTGCAG+TGG 0.662719 5_4:+5130987 Msa0832030:CDS
TGATTGTAAATCCGGAGCGG+CGG 0.664400 5_4:-5127301 None:intergenic
CAAAAGAATGACCATGACTG+AGG 0.669987 5_4:+5131152 Msa0832030:CDS
AAAACAAAATGAAAGGACAA+CGG 0.672941 5_4:-5131884 None:intergenic
TTGGACGGCGAGGTCGACGG+CGG 0.673722 5_4:-5126663 None:intergenic
TTCTGATTGTAAATCCGGAG+CGG 0.696202 5_4:-5127304 None:intergenic
GTTAGCTTATCAAAATCCTG+TGG 0.715142 5_4:+5131376 Msa0832030:CDS
AGTTACAACTGAATCAACTG+CGG 0.774997 5_4:-5131688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTCTAATTTAAAACAA+TGG + chr5_4:5129393-5129412 Msa0832030:intron 10.0%
!!! ATTTAGTTTAGAAAAAATTA+AGG - chr5_4:5129461-5129480 None:intergenic 10.0%
!! CTAATAATCAAAAAAATAAC+TGG - chr5_4:5126989-5127008 None:intergenic 15.0%
!!! TTTTATGATTAAACTGATTT+AGG + chr5_4:5127182-5127201 Msa0832030:intron 15.0%
!! TATATAAAAATCTTTCACTT+TGG + chr5_4:5127528-5127547 Msa0832030:intron 15.0%
!!! ACCCTTTTTTTTTAATATTA+TGG + chr5_4:5127755-5127774 Msa0832030:intron 15.0%
!! CCCATAATATTAAAAAAAAA+GGG - chr5_4:5127759-5127778 None:intergenic 15.0%
!!! CCCTTTTTTTTTAATATTAT+GGG + chr5_4:5127756-5127775 Msa0832030:intron 15.0%
!!! CCTTTTTTTTTAATATTATG+GGG + chr5_4:5127757-5127776 Msa0832030:intron 15.0%
!! CATATAATATTTGCAAAATT+TGG - chr5_4:5128195-5128214 None:intergenic 15.0%
!!! TTTTATACTCAATAAGTTTT+TGG + chr5_4:5129350-5129369 Msa0832030:intron 15.0%
!!! ATTTATATTCTGATTTTTCA+AGG + chr5_4:5129813-5129832 Msa0832030:intron 15.0%
!!! TTTATATTCTGATTTTTCAA+GGG + chr5_4:5129814-5129833 Msa0832030:intron 15.0%
!!! TTTATAGCAAGAATTTTTTT+TGG + chr5_4:5130143-5130162 Msa0832030:intron 15.0%
!!! TTATAGCAAGAATTTTTTTT+GGG + chr5_4:5130144-5130163 Msa0832030:intron 15.0%
!! AAACTAAGTATAAAATGTAA+AGG - chr5_4:5130349-5130368 None:intergenic 15.0%
!! TTTAGTCTAATTTATTAAAG+TGG + chr5_4:5130506-5130525 Msa0832030:intron 15.0%
!!! AGATTAAAGCTTTTATAAAA+CGG + chr5_4:5130587-5130606 Msa0832030:intron 15.0%
!!! AAAACTTTAAAAACTATACT+TGG - chr5_4:5130761-5130780 None:intergenic 15.0%
!! AAAAAACAAAACAAAATGAA+AGG - chr5_4:5131894-5131913 None:intergenic 15.0%
!!! TGGTTTTGATTTTATTGAAT+TGG + chr5_4:5126701-5126720 Msa0832030:five_prime_UTR 20.0%
!!! TTGTTATTATCTGAAGTTTT+TGG + chr5_4:5127087-5127106 Msa0832030:intron 20.0%
!!! TTTTTGATTTTGTTTGTTGT+TGG + chr5_4:5127142-5127161 Msa0832030:intron 20.0%
!!! GTTTTTTGATTTTTGAAAAC+TGG + chr5_4:5127378-5127397 Msa0832030:intron 20.0%
!! ACAAAAAATCATCTATCTTA+GGG - chr5_4:5127554-5127573 None:intergenic 20.0%
!! TACAAAAAATCATCTATCTT+AGG - chr5_4:5127555-5127574 None:intergenic 20.0%
!!! TAAGATAGATGATTTTTTGT+AGG + chr5_4:5127554-5127573 Msa0832030:intron 20.0%
!!! AAGATAGATGATTTTTTGTA+GGG + chr5_4:5127555-5127574 Msa0832030:intron 20.0%
!! TTAAAGTAGTAACTTTATCT+TGG + chr5_4:5127617-5127636 Msa0832030:intron 20.0%
!! CCCCATAATATTAAAAAAAA+AGG - chr5_4:5127760-5127779 None:intergenic 20.0%
!! TTAGAAAATTCCAATTGTAA+AGG + chr5_4:5127986-5128005 Msa0832030:intron 20.0%
!!! TGGTTATTCAATTCTTTTTA+CGG + chr5_4:5128147-5128166 Msa0832030:intron 20.0%
!!! ATTTTGAGTCATTTTTAGAA+AGG + chr5_4:5128378-5128397 Msa0832030:intron 20.0%
!! GTCAAATAGTGTAATTATTA+TGG + chr5_4:5128418-5128437 Msa0832030:intron 20.0%
!!! GTATATGTAAATTTTAGCAA+TGG - chr5_4:5128688-5128707 None:intergenic 20.0%
!! ATATAAGAAGATAACTGTTT+GGG - chr5_4:5128816-5128835 None:intergenic 20.0%
!!! AAACTTCTATTGTTTTATGA+AGG + chr5_4:5128950-5128969 Msa0832030:intron 20.0%
!! ATAGTTGTATGTAGATAAAA+TGG + chr5_4:5129065-5129084 Msa0832030:intron 20.0%
!! AGAATTAGATATTTCACATT+TGG + chr5_4:5129584-5129603 Msa0832030:intron 20.0%
!! TCATAGCAATAAAAACAATT+CGG - chr5_4:5129788-5129807 None:intergenic 20.0%
!!! TGCTTATTTTCTTTCAATTT+TGG + chr5_4:5129863-5129882 Msa0832030:intron 20.0%
!! TTAATATATTGATGAAGATG+AGG + chr5_4:5129957-5129976 Msa0832030:intron 20.0%
!! ATGTTCTTATCACAATTAAT+TGG + chr5_4:5130029-5130048 Msa0832030:intron 20.0%
!!! TAAAAAATCGGTCAAATTTT+CGG - chr5_4:5130103-5130122 None:intergenic 20.0%
!! CAACCAAAATCATAAAAAAT+CGG - chr5_4:5130115-5130134 None:intergenic 20.0%
!!! TCAAATATTTTGATCTTTCA+TGG + chr5_4:5130234-5130253 Msa0832030:intron 20.0%
!!! AGTTTTATTGTTGTTTACAT+AGG + chr5_4:5130364-5130383 Msa0832030:intron 20.0%
!!! AGGTTAATTTTATCACTAAT+TGG + chr5_4:5130628-5130647 Msa0832030:intron 20.0%
!!! TTTTAAAGTTTTGAAATACG+AGG + chr5_4:5130769-5130788 Msa0832030:intron 20.0%
!! AATTCCAAAACAATCATTAA+CGG - chr5_4:5132014-5132033 None:intergenic 20.0%
!! TTTCTCAATCAATTGAATTA+TGG + chr5_4:5132052-5132071 Msa0832030:three_prime_UTR 20.0%
!!! AGTTTTTGGTTGAGAAATTT+TGG + chr5_4:5127101-5127120 Msa0832030:intron 25.0%
!! AATTTTCATGCAGGAAAATT+GGG + chr5_4:5127229-5127248 Msa0832030:intron 25.0%
!! ACTTTCTGAGAATTGTTATA+GGG + chr5_4:5127467-5127486 Msa0832030:five_prime_UTR 25.0%
! AATGGTTAAGGAATCAAAAA+AGG - chr5_4:5127711-5127730 None:intergenic 25.0%
!! TTACGGAAATTCAATGTTTT+TGG + chr5_4:5128164-5128183 Msa0832030:intron 25.0%
!! TGTTATATACATTTTGAGCA+CGG + chr5_4:5128315-5128334 Msa0832030:intron 25.0%
!!! GTGTCTTTGAACAAATTTTT+TGG + chr5_4:5128342-5128361 Msa0832030:intron 25.0%
!!! TCAATTATTTTCAAGTAGTG+AGG + chr5_4:5128453-5128472 Msa0832030:intron 25.0%
!!! TATGTAAATTTTAGCAATGG+TGG - chr5_4:5128685-5128704 None:intergenic 25.0%
!! ATATGTAAATTTTGTCTCCA+GGG - chr5_4:5128764-5128783 None:intergenic 25.0%
! TATAAGAAGATAACTGTTTG+GGG - chr5_4:5128815-5128834 None:intergenic 25.0%
! CATATAAGAAGATAACTGTT+TGG - chr5_4:5128817-5128836 None:intergenic 25.0%
!!! CAATCATTTTTGGAAAGAAT+TGG - chr5_4:5128855-5128874 None:intergenic 25.0%
! TCTTTCCAAAAATGATTGAT+TGG + chr5_4:5128857-5128876 Msa0832030:intron 25.0%
! CTTTCCAAAAATGATTGATT+GGG + chr5_4:5128858-5128877 Msa0832030:intron 25.0%
!! AATTCCCAATCAATCATTTT+TGG - chr5_4:5128865-5128884 None:intergenic 25.0%
!!! ATTGTTTTATGAAGGTAACT+TGG + chr5_4:5128958-5128977 Msa0832030:intron 25.0%
!!! TAGGTTTGTTGAGTTAATTA+AGG + chr5_4:5129186-5129205 Msa0832030:CDS 25.0%
! TAACAACAGGAAAAGAAAAA+GGG - chr5_4:5129309-5129328 None:intergenic 25.0%
! ATAACAACAGGAAAAGAAAA+AGG - chr5_4:5129310-5129329 None:intergenic 25.0%
! AGTTACACAATAATAACAAC+AGG - chr5_4:5129322-5129341 None:intergenic 25.0%
!!! TTTTTGGTTTAGCAATTTCT+TGG + chr5_4:5129366-5129385 Msa0832030:intron 25.0%
!!! AAAGTCTTATTGGATTACTT+TGG + chr5_4:5129510-5129529 Msa0832030:intron 25.0%
! ATATCTAATTCTATGCATGA+GGG - chr5_4:5129576-5129595 None:intergenic 25.0%
! AATATCTAATTCTATGCATG+AGG - chr5_4:5129577-5129596 None:intergenic 25.0%
! TACTTCATTACGAATAACTT+TGG + chr5_4:5129695-5129714 Msa0832030:intron 25.0%
! CATAGCAATAAAAACAATTC+GGG - chr5_4:5129787-5129806 None:intergenic 25.0%
! TATGACACATATAACCAATA+AGG + chr5_4:5129895-5129914 Msa0832030:intron 25.0%
! ATGACACATATAACCAATAA+GGG + chr5_4:5129896-5129915 Msa0832030:intron 25.0%
! GTATAGAAATCTCCTAAAAT+TGG + chr5_4:5129984-5130003 Msa0832030:intron 25.0%
!!! AAATGAGTTTTTTAGTCTAC+AGG + chr5_4:5130061-5130080 Msa0832030:intron 25.0%
!!! AATGAGTTTTTTAGTCTACA+GGG + chr5_4:5130062-5130081 Msa0832030:intron 25.0%
!!! TGACCGATTTTTTATGATTT+TGG + chr5_4:5130109-5130128 Msa0832030:intron 25.0%
!!! TTATTGTTGTTTACATAGGT+TGG + chr5_4:5130368-5130387 Msa0832030:intron 25.0%
! AGTCTAATTTATTAAAGTGG+TGG + chr5_4:5130509-5130528 Msa0832030:intron 25.0%
!! TAAAGCTTTTATAAAACGGT+TGG + chr5_4:5130591-5130610 Msa0832030:intron 25.0%
!! AAAGCTTTTATAAAACGGTT+GGG + chr5_4:5130592-5130611 Msa0832030:intron 25.0%
!! ATTTTATCACTAATTGGATC+TGG + chr5_4:5130634-5130653 Msa0832030:intron 25.0%
!! TAAAAAAAGATTTTGTGCCA+AGG - chr5_4:5130668-5130687 None:intergenic 25.0%
! ATTAATTATTTCCTCAGTCA+TGG - chr5_4:5131166-5131185 None:intergenic 25.0%
! TGACTGAGGAAATAATTAAT+CGG + chr5_4:5131166-5131185 Msa0832030:CDS 25.0%
!!! GGAAATAATTAATCGGTTTT+TGG + chr5_4:5131173-5131192 Msa0832030:CDS 25.0%
! GCTCAAAAAAAGAAATCAAA+AGG - chr5_4:5131310-5131329 None:intergenic 25.0%
!!! TTGATTTCTTTTTTTGAGCT+TGG + chr5_4:5131311-5131330 Msa0832030:intron 25.0%
! TGATCAAAAAAATATACCAC+AGG - chr5_4:5131395-5131414 None:intergenic 25.0%
! ATCATTTCTGCAGTTTATAA+AGG + chr5_4:5131411-5131430 Msa0832030:intron 25.0%
! AAAACAAAATGAAAGGACAA+CGG - chr5_4:5131887-5131906 None:intergenic 25.0%
TCTAATCACTTAAAGCATGT+AGG - chr5_4:5126872-5126891 None:intergenic 30.0%
! AGTGATTAGAAGCATAATCA+AGG + chr5_4:5126882-5126901 Msa0832030:five_prime_UTR 30.0%
! TTAGAAGCATAATCAAGGTT+TGG + chr5_4:5126887-5126906 Msa0832030:intron 30.0%
!! TTTCCCCTTTTAATCGATTT+AGG + chr5_4:5127043-5127062 Msa0832030:intron 30.0%
!! TTCCCCTTTTAATCGATTTA+GGG + chr5_4:5127044-5127063 Msa0832030:intron 30.0%
AACCCTAAATCGATTAAAAG+GGG - chr5_4:5127049-5127068 None:intergenic 30.0%
GAACCCTAAATCGATTAAAA+GGG - chr5_4:5127050-5127069 None:intergenic 30.0%
!!! TGAGAAATTTTGGTTGATTC+TGG + chr5_4:5127111-5127130 Msa0832030:intron 30.0%
! TTAAACTGATTTAGGCTGAT+TGG + chr5_4:5127190-5127209 Msa0832030:intron 30.0%
! TAAACTGATTTAGGCTGATT+GGG + chr5_4:5127191-5127210 Msa0832030:intron 30.0%
! TTTTGGATGAATTTTCATGC+AGG + chr5_4:5127220-5127239 Msa0832030:intron 30.0%
! GAATTTTCATGCAGGAAAAT+TGG + chr5_4:5127228-5127247 Msa0832030:intron 30.0%
TTACCTTCTGATTGTAAATC+CGG - chr5_4:5127312-5127331 None:intergenic 30.0%
ATTGCGATGACATAAATTTG+GGG - chr5_4:5127347-5127366 None:intergenic 30.0%
GATTGCGATGACATAAATTT+GGG - chr5_4:5127348-5127367 None:intergenic 30.0%
! CACTTTCTGAGAATTGTTAT+AGG + chr5_4:5127466-5127485 Msa0832030:five_prime_UTR 30.0%
! CTTTCTGAGAATTGTTATAG+GGG + chr5_4:5127468-5127487 Msa0832030:five_prime_UTR 30.0%
ATCAAGCTATTGTTTAGTAC+AGG + chr5_4:5127933-5127952 Msa0832030:intron 30.0%
AAAGAATTGAATAACCAGAG+AGG - chr5_4:5128144-5128163 None:intergenic 30.0%
TCTTCATCTAATCAGAAATG+TGG + chr5_4:5128225-5128244 Msa0832030:intron 30.0%
CTTCATCTAATCAGAAATGT+GGG + chr5_4:5128226-5128245 Msa0832030:intron 30.0%
CTAACTTCAATTCTCATCAT+TGG - chr5_4:5128277-5128296 None:intergenic 30.0%
TGAGAATTGAAGTTAGTTAG+CGG + chr5_4:5128281-5128300 Msa0832030:intron 30.0%
GAACAATGTGTATTCTCAAT+AGG + chr5_4:5128511-5128530 Msa0832030:intron 30.0%
! ATAGTTGCTTTCATCTATAC+AGG + chr5_4:5128539-5128558 Msa0832030:intron 30.0%
! TAGTTGCTTTCATCTATACA+GGG + chr5_4:5128540-5128559 Msa0832030:intron 30.0%
! CATATGTAAATTTTGTCTCC+AGG - chr5_4:5128765-5128784 None:intergenic 30.0%
AAGGTTACAAGTCTACAATA+CGG + chr5_4:5128994-5129013 Msa0832030:intron 30.0%
! GCAAATTTTCTCTCATTTCT+CGG + chr5_4:5129135-5129154 Msa0832030:CDS 30.0%
! CAAATTTTCTCTCATTTCTC+GGG + chr5_4:5129136-5129155 Msa0832030:CDS 30.0%
AACTCATTAGTAGTAATGGT+AGG + chr5_4:5129167-5129186 Msa0832030:CDS 30.0%
GTTACTCATCAATAACTCTT+TGG - chr5_4:5129429-5129448 None:intergenic 30.0%
!! TTTTCCACTAATTTTGAGTG+AGG + chr5_4:5129481-5129500 Msa0832030:intron 30.0%
TATCTAATTCTATGCATGAG+GGG - chr5_4:5129575-5129594 None:intergenic 30.0%
TCTTATACCATCTCAAAGTT+TGG + chr5_4:5129650-5129669 Msa0832030:intron 30.0%
!!! TCTGATTTTTCAAGGGAATA+AGG + chr5_4:5129821-5129840 Msa0832030:intron 30.0%
!!! CTGATTTTTCAAGGGAATAA+GGG + chr5_4:5129822-5129841 Msa0832030:intron 30.0%
!! TTCTTTCAATTTTGGTGAAC+AGG + chr5_4:5129871-5129890 Msa0832030:intron 30.0%
ATATTGATGAAGATGAGGTA+TGG + chr5_4:5129962-5129981 Msa0832030:intron 30.0%
!!! TGATCTTTCATGGTGTTTTT+TGG + chr5_4:5130244-5130263 Msa0832030:intron 30.0%
CATCAAAGCAATTAGTATTC+AGG - chr5_4:5130301-5130320 None:intergenic 30.0%
TGTAAAGGTGAAAGAATAAC+AGG - chr5_4:5130334-5130353 None:intergenic 30.0%
AGAAAAGCAATTGAGAAACA+AGG + chr5_4:5130413-5130432 Msa0832030:CDS 30.0%
CTAATTTATTAAAGTGGTGG+AGG + chr5_4:5130512-5130531 Msa0832030:intron 30.0%
!!! ATGCTATTTTCCTCCATTTT+TGG + chr5_4:5130535-5130554 Msa0832030:intron 30.0%
ATCACATGTCTTATAGTAGT+TGG + chr5_4:5130692-5130711 Msa0832030:intron 30.0%
!! TGGTACTTGCTATTTACATT+TGG + chr5_4:5130712-5130731 Msa0832030:intron 30.0%
TCTCATTCTTATTACCTTGA+TGG + chr5_4:5131029-5131048 Msa0832030:CDS 30.0%
ATGATAATTGCTAACCATCA+AGG - chr5_4:5131046-5131065 None:intergenic 30.0%
TAGACTTTACATTTATCCCA+TGG - chr5_4:5131228-5131247 None:intergenic 30.0%
! CTTGAAAGATTATCGAGTTT+TGG + chr5_4:5131840-5131859 Msa0832030:three_prime_UTR 30.0%
! GTTTCCGTTAATGATTGTTT+TGG + chr5_4:5132007-5132026 Msa0832030:three_prime_UTR 30.0%
AAATCAAAACCAGTGCAGAT+CGG - chr5_4:5126693-5126712 None:intergenic 35.0%
! CATATGTTTCTGTAAGTGAG+AGG - chr5_4:5126746-5126765 None:intergenic 35.0%
TCTGATGTAGAAAGAAGGAA+AGG - chr5_4:5126799-5126818 None:intergenic 35.0%
! ATTGCATGTTGCTTCAATTG+GGG - chr5_4:5126842-5126861 None:intergenic 35.0%
! CATTGCATGTTGCTTCAATT+GGG - chr5_4:5126843-5126862 None:intergenic 35.0%
! TCATTGCATGTTGCTTCAAT+TGG - chr5_4:5126844-5126863 None:intergenic 35.0%
! AAGACTGATTCAGCCAATAA+GGG - chr5_4:5126928-5126947 None:intergenic 35.0%
! AGTCTTCTCTTTTCATGTTC+TGG + chr5_4:5126942-5126961 Msa0832030:intron 35.0%
! GTCTTCTCTTTTCATGTTCT+GGG + chr5_4:5126943-5126962 Msa0832030:intron 35.0%
GGAACCCTAAATCGATTAAA+AGG - chr5_4:5127051-5127070 None:intergenic 35.0%
!!! GATTTAGGGTTCCTCTTTTT+TGG + chr5_4:5127058-5127077 Msa0832030:intron 35.0%
AACAACAACCTCCAAAAAAG+AGG - chr5_4:5127072-5127091 None:intergenic 35.0%
!! GTTGTTGGATGTTTCTGTTT+TGG + chr5_4:5127157-5127176 Msa0832030:intron 35.0%
! AAACTGATTTAGGCTGATTG+GGG + chr5_4:5127192-5127211 Msa0832030:intron 35.0%
CAAATCTGCAGAATTGTAGA+TGG + chr5_4:5127253-5127272 Msa0832030:five_prime_UTR 35.0%
CGATTGCGATGACATAAATT+TGG - chr5_4:5127349-5127368 None:intergenic 35.0%
TTTCTTATCAAGTGCCTTGA+GGG - chr5_4:5127596-5127615 None:intergenic 35.0%
ATTCCTTAACCATTGTCCTA+AGG + chr5_4:5127717-5127736 Msa0832030:intron 35.0%
TTCCTTAACCATTGTCCTAA+GGG + chr5_4:5127718-5127737 Msa0832030:intron 35.0%
AAGTTCATTGACACAACATG+TGG + chr5_4:5127814-5127833 Msa0832030:intron 35.0%
ACAACATGTGGAAAATGTGT+CGG + chr5_4:5127826-5127845 Msa0832030:intron 35.0%
TAAACAACTTCAGCATCTCT+AGG - chr5_4:5128023-5128042 None:intergenic 35.0%
TTCAAGTAGTGAGGAATAGA+TGG + chr5_4:5128462-5128481 Msa0832030:intron 35.0%
TCAAGTAGTGAGGAATAGAT+GGG + chr5_4:5128463-5128482 Msa0832030:intron 35.0%
CATTTAGAAGCTTAGAGTCA+CGG + chr5_4:5128616-5128635 Msa0832030:intron 35.0%
ATTTAGAAGCTTAGAGTCAC+GGG + chr5_4:5128617-5128636 Msa0832030:intron 35.0%
! GCTCATTGCCAAAAGTTTTA+TGG + chr5_4:5128786-5128805 Msa0832030:intron 35.0%
TGCTAATCGCTGTCATAATT+AGG - chr5_4:5128911-5128930 None:intergenic 35.0%
ACTTGTAACCTTATACACAG+GGG - chr5_4:5128986-5129005 None:intergenic 35.0%
GACTTGTAACCTTATACACA+GGG - chr5_4:5128987-5129006 None:intergenic 35.0%
AGACTTGTAACCTTATACAC+AGG - chr5_4:5128988-5129007 None:intergenic 35.0%
AACTATCGATAATGCAGTGT+TGG - chr5_4:5129051-5129070 None:intergenic 35.0%
GCTCAACTCATTAGTAGTAA+TGG + chr5_4:5129163-5129182 Msa0832030:CDS 35.0%
! TAAATTCATTGACTGATGCG+TGG + chr5_4:5129250-5129269 Msa0832030:intron 35.0%
ACAGGAAAAGAAAAAGGGAA+CGG - chr5_4:5129304-5129323 None:intergenic 35.0%
! TGGTCTATCATTAGTTGATG+TGG + chr5_4:5129530-5129549 Msa0832030:intron 35.0%
ATCTAATTCTATGCATGAGG+GGG - chr5_4:5129574-5129593 None:intergenic 35.0%
GAAGTATAGAGAAACATGCA+AGG - chr5_4:5129681-5129700 None:intergenic 35.0%
TTCAGCATTTAGACCCTTAT+TGG - chr5_4:5129912-5129931 None:intergenic 35.0%
GAAATCTCCTAAAATTGGTG+TGG + chr5_4:5129989-5130008 Msa0832030:intron 35.0%
AGGTGAAAGAATAACAGGAA+AGG - chr5_4:5130329-5130348 None:intergenic 35.0%
!!! TCCTCCATTTTTGGTTGTTA+TGG + chr5_4:5130544-5130563 Msa0832030:intron 35.0%
!!! ATTTTTGGTTGTTATGGCAG+CGG + chr5_4:5130550-5130569 Msa0832030:intron 35.0%
GCACACAAAAAAAGGTTTGT+AGG + chr5_4:5130793-5130812 Msa0832030:intron 35.0%
AAAAAAAGGTTTGTAGGAGC+AGG + chr5_4:5130799-5130818 Msa0832030:intron 35.0%
AATACCCTAAAAGAGTTGCT+TGG + chr5_4:5130922-5130941 Msa0832030:intron 35.0%
! TTCACCAAGCAACTCTTTTA+GGG - chr5_4:5130929-5130948 None:intergenic 35.0%
! ATTCACCAAGCAACTCTTTT+AGG - chr5_4:5130930-5130949 None:intergenic 35.0%
ATGCCAACCTTTATCGTAAT+TGG + chr5_4:5131115-5131134 Msa0832030:CDS 35.0%
ACTTTACATTTATCCCATGG+AGG - chr5_4:5131225-5131244 None:intergenic 35.0%
TGTCTCACTCTGCATATAAT+TGG - chr5_4:5131283-5131302 None:intergenic 35.0%
! GTTAGCTTATCAAAATCCTG+TGG + chr5_4:5131376-5131395 Msa0832030:CDS 35.0%
!! GCATAATTTTCAGCTTGCTT+CGG - chr5_4:5131447-5131466 None:intergenic 35.0%
CATGCAGGAAAATATTGAAG+TGG + chr5_4:5131482-5131501 Msa0832030:intron 35.0%
AGTTACAACTGAATCAACTG+CGG - chr5_4:5131691-5131710 None:intergenic 35.0%
AACTCCAACTAGCAAATCTT+TGG + chr5_4:5131707-5131726 Msa0832030:CDS 35.0%
ACTCCAACTAGCAAATCTTT+GGG + chr5_4:5131708-5131727 Msa0832030:CDS 35.0%
!! TTTCCCAAAGATTTGCTAGT+TGG - chr5_4:5131714-5131733 None:intergenic 35.0%
TTTCAAGAGACTTCACTCAT+CGG - chr5_4:5131827-5131846 None:intergenic 35.0%
GCATAAAAACACCATAAGTC+TGG - chr5_4:5131961-5131980 None:intergenic 35.0%
AAGGGTCTGATGTAGAAAGA+AGG - chr5_4:5126804-5126823 None:intergenic 40.0%
GGGGAGGTTGAAGAATTAAA+GGG - chr5_4:5126822-5126841 None:intergenic 40.0%
! TTGCATGTTGCTTCAATTGG+GGG - chr5_4:5126841-5126860 None:intergenic 40.0%
CCAATAAGGGAAGGAGAATA+AGG - chr5_4:5126915-5126934 None:intergenic 40.0%
CCTTATTCTCCTTCCCTTAT+TGG + chr5_4:5126912-5126931 Msa0832030:intron 40.0%
! GAAGACTGATTCAGCCAATA+AGG - chr5_4:5126929-5126948 None:intergenic 40.0%
! TCTGGGTTTGCTTGTGAAAT+TGG + chr5_4:5126960-5126979 Msa0832030:intron 40.0%
!!! TTAGGGTTCCTCTTTTTTGG+AGG + chr5_4:5127061-5127080 Msa0832030:intron 40.0%
!! TAGATGGTCTTGCTGTTTGA+GGG + chr5_4:5127269-5127288 Msa0832030:five_prime_UTR 40.0%
TTCTGATTGTAAATCCGGAG+CGG - chr5_4:5127307-5127326 None:intergenic 40.0%
GTTTCTTATCAAGTGCCTTG+AGG - chr5_4:5127597-5127616 None:intergenic 40.0%
! TTTTGCTAACCAATGCCCTT+AGG - chr5_4:5127736-5127755 None:intergenic 40.0%
CTCTCATCAGCCTTTACAAT+TGG - chr5_4:5127999-5128018 None:intergenic 40.0%
AAGCAGCAAAAGAGCTTAAC+TGG + chr5_4:5128057-5128076 Msa0832030:CDS 40.0%
AGCTTAACTGGAAGTAAGTG+TGG + chr5_4:5128069-5128088 Msa0832030:intron 40.0%
GAGGAATAGATGGGAGTTAT+AGG + chr5_4:5128472-5128491 Msa0832030:intron 40.0%
! TGGGGCAACCATAAAACTTT+TGG - chr5_4:5128797-5128816 None:intergenic 40.0%
!! AAGTTCATTGCTTTTGACGC+TGG - chr5_4:5129112-5129131 None:intergenic 40.0%
CAGTCCTCACTCAAAATTAG+TGG - chr5_4:5129488-5129507 None:intergenic 40.0%
! GAGGACTGTCAAAGTCTTAT+TGG + chr5_4:5129500-5129519 Msa0832030:intron 40.0%
! GGAGTGAAGCTTTGCAATTT+TGG + chr5_4:5129605-5129624 Msa0832030:intron 40.0%
! ATTTTGGACATGCCACAAGT+TGG + chr5_4:5129621-5129640 Msa0832030:intron 40.0%
ATAAGAGTCGATCCAACTTG+TGG - chr5_4:5129636-5129655 None:intergenic 40.0%
! AACACAGCCACACCAATTTT+AGG - chr5_4:5129999-5130018 None:intergenic 40.0%
!!! AGTTTTTTAGTCTACAGGGC+TGG + chr5_4:5130066-5130085 Msa0832030:intron 40.0%
!! GTTGTTTACATAGGTTGGTC+AGG + chr5_4:5130373-5130392 Msa0832030:intron 40.0%
GCCATAACAACCAAAAATGG+AGG - chr5_4:5130548-5130567 None:intergenic 40.0%
GCTGCCATAACAACCAAAAA+TGG - chr5_4:5130551-5130570 None:intergenic 40.0%
ATAAAACGGTTGGGAGTTCA+AGG + chr5_4:5130601-5130620 Msa0832030:intron 40.0%
TACGAGGTGCACACAAAAAA+AGG + chr5_4:5130785-5130804 Msa0832030:intron 40.0%
ATGTTCTCGCTATGAACCTT+GGG + chr5_4:5130859-5130878 Msa0832030:intron 40.0%
ATCGTTGAGCACTCAAATGA+TGG + chr5_4:5130967-5130986 Msa0832030:CDS 40.0%
TCAAATGATGGTTCAGGAAC+TGG + chr5_4:5130979-5130998 Msa0832030:CDS 40.0%
CAAAAGAATGACCATGACTG+AGG + chr5_4:5131152-5131171 Msa0832030:CDS 40.0%
!! ATCACTTTTCTCATGCATGC+AGG + chr5_4:5131467-5131486 Msa0832030:intron 40.0%
ACTCCAACTAGCAAACCTTT+GGG + chr5_4:5131552-5131571 Msa0832030:CDS 40.0%
!! TTTCCCAAAGGTTTGCTAGT+TGG - chr5_4:5131558-5131577 None:intergenic 40.0%
!! GTTGTTGTGCATAGTTCTGA+TGG + chr5_4:5131612-5131631 Msa0832030:CDS 40.0%
TGCTACAAAAGAGCTAAAGC+TGG + chr5_4:5131638-5131657 Msa0832030:CDS 40.0%
! AAATGAAAGGACAACGGACT+TGG - chr5_4:5131881-5131900 None:intergenic 40.0%
GGGGGAGGTTGAAGAATTAA+AGG - chr5_4:5126823-5126842 None:intergenic 45.0%
CTGATTCAGCCAATAAGGGA+AGG - chr5_4:5126924-5126943 None:intergenic 45.0%
!! GTAGATGGTCTTGCTGTTTG+AGG + chr5_4:5127268-5127287 Msa0832030:five_prime_UTR 45.0%
GCTCCGGATTTACAATCAGA+AGG + chr5_4:5127306-5127325 Msa0832030:five_prime_UTR 45.0%
AATGCTAACAAGTGCCCTCA+AGG + chr5_4:5127579-5127598 Msa0832030:intron 45.0%
TGCCCTTAGGACAATGGTTA+AGG - chr5_4:5127723-5127742 None:intergenic 45.0%
! AACCATTGTCCTAAGGGCAT+TGG + chr5_4:5127724-5127743 Msa0832030:intron 45.0%
AACCAATGCCCTTAGGACAA+TGG - chr5_4:5127729-5127748 None:intergenic 45.0%
GTTGTTAAAGCTCTCCTCTC+TGG + chr5_4:5128127-5128146 Msa0832030:intron 45.0%
CTATAGATCTTTCGTTGCCC+TGG + chr5_4:5128744-5128763 Msa0832030:intron 45.0%
TGATGCGTGGTGCTCATTAA+AGG + chr5_4:5129263-5129282 Msa0832030:intron 45.0%
CGTGGTGCTCATTAAAGGTT+CGG + chr5_4:5129268-5129287 Msa0832030:intron 45.0%
! GGCATGTCCAAACTTTGAGA+TGG - chr5_4:5129660-5129679 None:intergenic 45.0%
!! CTGCAGACTTCTGAAATTGC+AGG - chr5_4:5129736-5129755 None:intergenic 45.0%
!! ATAGGTTGGTCAGGATGTTG+TGG + chr5_4:5130382-5130401 Msa0832030:intron 45.0%
GGTTGGGAGTTCAAGGATAT+AGG + chr5_4:5130608-5130627 Msa0832030:intron 45.0%
AAGGTTTGTAGGAGCAGGTT+AGG + chr5_4:5130804-5130823 Msa0832030:intron 45.0%
GATGTTCTCGCTATGAACCT+TGG + chr5_4:5130858-5130877 Msa0832030:intron 45.0%
TCTCTAAGCACCATCTGTGA+AGG - chr5_4:5130903-5130922 None:intergenic 45.0%
GAGCACTCAAATGATGGTTC+AGG + chr5_4:5130973-5130992 Msa0832030:CDS 45.0%
GCGCCAATTACGATAAAGGT+TGG - chr5_4:5131121-5131140 None:intergenic 45.0%
AGCTGCGCCAATTACGATAA+AGG - chr5_4:5131125-5131144 None:intergenic 45.0%
!! AATCGGTTTTTGGACCTCCA+TGG + chr5_4:5131183-5131202 Msa0832030:CDS 45.0%
!! ATCGGTTTTTGGACCTCCAT+GGG + chr5_4:5131184-5131203 Msa0832030:CDS 45.0%
!! ATCGGTTTTTGGACCTCCAT+GGG + chr5_4:5131184-5131203 Msa0832030:CDS 45.0%
!!! TTTTGAGCTTGGTAACGACG+AGG + chr5_4:5131322-5131341 Msa0832030:intron 45.0%
GACTCCAACTAGCAAACCTT+TGG + chr5_4:5131551-5131570 Msa0832030:CDS 45.0%
TGCGGCAACATCATCTTTGT+TGG - chr5_4:5131673-5131692 None:intergenic 45.0%
ACCTTAACACGCACAAGCTT+AGG - chr5_4:5131799-5131818 None:intergenic 45.0%
! TTTTGCTGCTGCCAGACTTA+TGG + chr5_4:5131947-5131966 Msa0832030:three_prime_UTR 45.0%
AAGAAGGGGGACGAGAGAAA+CGG + chr5_4:5126580-5126599 Msa0832030:five_prime_UTR 50.0%
AAGGGGGACGACAGAAAGAA+CGG + chr5_4:5126618-5126637 Msa0832030:five_prime_UTR 50.0%
AGAAAGAACGGCAGAGGAGA+GGG + chr5_4:5126630-5126649 Msa0832030:five_prime_UTR 50.0%
AGTGAGGGAGAGAAGTAGGA+GGG - chr5_4:5126771-5126790 None:intergenic 50.0%
TGAGAGTGAGGGAGAGAAGT+AGG - chr5_4:5126775-5126794 None:intergenic 50.0%
GAAGGAAAGGCTGAGAGTGA+GGG - chr5_4:5126786-5126805 None:intergenic 50.0%
AGAAGGAAAGGCTGAGAGTG+AGG - chr5_4:5126787-5126806 None:intergenic 50.0%
! CATGTTGCTTCAATTGGGGG+AGG - chr5_4:5126838-5126857 None:intergenic 50.0%
! GGCTGATTGGGGACTGTTTT+TGG + chr5_4:5127203-5127222 Msa0832030:intron 50.0%
TGATTGTAAATCCGGAGCGG+CGG - chr5_4:5127304-5127323 None:intergenic 50.0%
!! ACTTGGTGCCCCTGTGTATA+AGG + chr5_4:5128975-5128994 Msa0832030:intron 50.0%
ATATTAAGATGCCCTGCCCC+AGG - chr5_4:5129944-5129963 None:intergenic 50.0%
TAGCTGCTACGACAAACCCA+AGG - chr5_4:5130878-5130897 None:intergenic 50.0%
TTGGGTTTGTCGTAGCAGCT+AGG + chr5_4:5130877-5130896 Msa0832030:intron 50.0%
TTTGGACCTCCATGGGACAT+CGG + chr5_4:5131191-5131210 Msa0832030:CDS 50.0%
CAAAAACCGATGTCCCATGG+AGG - chr5_4:5131200-5131219 None:intergenic 50.0%
!!! CTCCATGGGACATCGGTTTT+TGG + chr5_4:5131198-5131217 Msa0832030:intron 50.0%
GTCCAAAAACCGATGTCCCA+TGG - chr5_4:5131203-5131222 None:intergenic 50.0%
!!! CATCGGTTTTTGGACCTCCA+TGG + chr5_4:5131208-5131227 Msa0832030:intron 50.0%
! CGAAGTTGCTGCTGCTGATT+CGG + chr5_4:5131524-5131543 Msa0832030:CDS 50.0%
GCCTAAGCTTGTGCGTGTTA+AGG + chr5_4:5131795-5131814 Msa0832030:exon 50.0%
AGAAGGGGGACGAGAGAAAC+GGG + chr5_4:5126581-5126600 Msa0832030:five_prime_UTR 55.0%
GAGAGAAACGGGAACAGGAG+AGG + chr5_4:5126592-5126611 Msa0832030:five_prime_UTR 55.0%
ACGGGAACAGGAGAGGAAGA+AGG + chr5_4:5126599-5126618 Msa0832030:five_prime_UTR 55.0%
CGGGAACAGGAGAGGAAGAA+GGG + chr5_4:5126600-5126619 Msa0832030:five_prime_UTR 55.0%
GGGAACAGGAGAGGAAGAAG+GGG + chr5_4:5126601-5126620 Msa0832030:five_prime_UTR 55.0%
GGAACAGGAGAGGAAGAAGG+GGG + chr5_4:5126602-5126621 Msa0832030:five_prime_UTR 55.0%
GACGACAGAAAGAACGGCAG+AGG + chr5_4:5126624-5126643 Msa0832030:five_prime_UTR 55.0%
CAGAAAGAACGGCAGAGGAG+AGG + chr5_4:5126629-5126648 Msa0832030:five_prime_UTR 55.0%
!! GTGCAGATCGGAGTGTTGGA+CGG - chr5_4:5126681-5126700 None:intergenic 55.0%
TCCAACACTCCGATCTGCAC+TGG + chr5_4:5126681-5126700 Msa0832030:five_prime_UTR 55.0%
ACCAGTGCAGATCGGAGTGT+TGG - chr5_4:5126685-5126704 None:intergenic 55.0%
GAGTGAGGGAGAGAAGTAGG+AGG - chr5_4:5126772-5126791 None:intergenic 55.0%
AATGCTGAACCACACCAGCC+TGG + chr5_4:5129923-5129942 Msa0832030:intron 55.0%
ATGCTGAACCACACCAGCCT+GGG + chr5_4:5129924-5129943 Msa0832030:intron 55.0%
TGGATCTGGCAGCTAAGCCT+TGG + chr5_4:5130648-5130667 Msa0832030:intron 55.0%
AGCAGCTAGGCCTTCACAGA+TGG + chr5_4:5130890-5130909 Msa0832030:intron 55.0%
TGGTTCAGGAACTGGTGCAG+TGG + chr5_4:5130987-5131006 Msa0832030:CDS 55.0%
GGGACGAGAGAAACGGGAAC+AGG + chr5_4:5126587-5126606 Msa0832030:five_prime_UTR 60.0%
TGCTGAACCACACCAGCCTG+GGG + chr5_4:5129925-5129944 Msa0832030:intron 60.0%
GTGTTGGACGGCGAGGTCGA+CGG - chr5_4:5126669-5126688 None:intergenic 65.0%
!! GATCGGAGTGTTGGACGGCG+AGG - chr5_4:5126676-5126695 None:intergenic 65.0%
GGAATTCGCTTCCGCCGCTC+CGG + chr5_4:5127290-5127309 Msa0832030:five_prime_UTR 65.0%
AACCACACCAGCCTGGGGCA+GGG + chr5_4:5129930-5129949 Msa0832030:intron 65.0%
TAAGATGCCCTGCCCCAGGC+TGG - chr5_4:5129940-5129959 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG - chr5_4:5126666-5126685 None:intergenic 70.0%
GAACCACACCAGCCTGGGGC+AGG + chr5_4:5129929-5129948 Msa0832030:intron 70.0%
TGCCCTGCCCCAGGCTGGTG+TGG - chr5_4:5129935-5129954 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5126579 5132091 5126579 ID=Msa0832030;Name=Msa0832030
chr5_4 mRNA 5126579 5132091 5126579 ID=Msa0832030-mRNA-1;Parent=Msa0832030;Name=Msa0832030-mRNA-1;_AED=0.26;_eAED=0.27;_QI=504|0.5|0.55|1|0.62|0.66|9|291|282
chr5_4 exon 5126579 5126903 5126579 ID=Msa0832030-mRNA-1:exon:2135;Parent=Msa0832030-mRNA-1
chr5_4 exon 5127242 5127327 5127242 ID=Msa0832030-mRNA-1:exon:2136;Parent=Msa0832030-mRNA-1
chr5_4 exon 5127419 5127489 5127419 ID=Msa0832030-mRNA-1:exon:2137;Parent=Msa0832030-mRNA-1
chr5_4 exon 5127990 5128081 5127990 ID=Msa0832030-mRNA-1:exon:2138;Parent=Msa0832030-mRNA-1
chr5_4 exon 5129113 5129207 5129113 ID=Msa0832030-mRNA-1:exon:2139;Parent=Msa0832030-mRNA-1
chr5_4 exon 5130386 5130434 5130386 ID=Msa0832030-mRNA-1:exon:2140;Parent=Msa0832030-mRNA-1
chr5_4 exon 5130959 5131212 5130959 ID=Msa0832030-mRNA-1:exon:2141;Parent=Msa0832030-mRNA-1
chr5_4 exon 5131329 5131397 5131329 ID=Msa0832030-mRNA-1:exon:2142;Parent=Msa0832030-mRNA-1
chr5_4 exon 5131489 5132091 5131489 ID=Msa0832030-mRNA-1:exon:2143;Parent=Msa0832030-mRNA-1
chr5_4 five_prime_UTR 5126579 5126903 5126579 ID=Msa0832030-mRNA-1:five_prime_utr;Parent=Msa0832030-mRNA-1
chr5_4 five_prime_UTR 5127242 5127327 5127242 ID=Msa0832030-mRNA-1:five_prime_utr;Parent=Msa0832030-mRNA-1
chr5_4 five_prime_UTR 5127419 5127489 5127419 ID=Msa0832030-mRNA-1:five_prime_utr;Parent=Msa0832030-mRNA-1
chr5_4 five_prime_UTR 5127990 5128011 5127990 ID=Msa0832030-mRNA-1:five_prime_utr;Parent=Msa0832030-mRNA-1
chr5_4 CDS 5128012 5128081 5128012 ID=Msa0832030-mRNA-1:cds;Parent=Msa0832030-mRNA-1
chr5_4 CDS 5129113 5129207 5129113 ID=Msa0832030-mRNA-1:cds;Parent=Msa0832030-mRNA-1
chr5_4 CDS 5130386 5130434 5130386 ID=Msa0832030-mRNA-1:cds;Parent=Msa0832030-mRNA-1
chr5_4 CDS 5130959 5131212 5130959 ID=Msa0832030-mRNA-1:cds;Parent=Msa0832030-mRNA-1
chr5_4 CDS 5131329 5131397 5131329 ID=Msa0832030-mRNA-1:cds;Parent=Msa0832030-mRNA-1
chr5_4 CDS 5131489 5131800 5131489 ID=Msa0832030-mRNA-1:cds;Parent=Msa0832030-mRNA-1
chr5_4 three_prime_UTR 5131801 5132091 5131801 ID=Msa0832030-mRNA-1:three_prime_utr;Parent=Msa0832030-mRNA-1
Gene Sequence

>Msa0832030

ATGAGAGACCTAGAGATGCTGAAGTTGTTTATGCATCAACAAAAAAAGCAGCAAAAGAGCTTAACTGGAACGTCAAAAGCAATGAACTTTGTGCAAATTTTCTCTCATTTCTCGGGATCTGCTCAACTCATTAGTAGTAATGGTAGGTTTGTTGAGTTAATTAAGGTTGGTCAGGATGTTGTGGCTGAATTGAGAAAAGCAATTGAGAAACAAGATAGTGTTATCGTTGAGCACTCAAATGATGGTTCAGGAACTGGTGCAGTGGTGCTGCACTTCTTGCTGCTTCTCATTCTTATTACCTTGATGGTTAGCAATTATCATGTTAAGATGTTTATCGATAAACGAATGTTGTTCAAAGTTGAAGTGAGTGATGCCAACCTTTATCGTAATTGGCGCAGCTATACTGTCAAAAGAATGACCATGACTGAGGAAATAATTAATCGGTTTTTGGACCTCCATGGGACATCGCTTGGTAACGACGAGGAGAATGCTGCATATGTTGAGACTGTTTATGAGTTAGCTTATCAAAATCCTGTGGAAAATATTGAAGTGGTTGATTCAAGCAACAAAGACGAAGTTGCTGCTGCTGATTCGGTTGTGACTCCAACTAGCAAACCTTTGGGAAAGCGGTCTACTGATAGTGTGGAATTACTTGATGATGTTGTTGTGCATAGTTCTGATGGATCTGCTACAAAAGAGCTAAAGCTGGTTGATTCAACCAACAAAGATGATGTTGCCGCAGTTGATTCAGTTGTAACTCCAACTAGCAAATCTTTGGGAAAGCGATCTGCTGATAGCGTCGAATCAGCAGATGATATTGTTTTGATTGATTGTGACAAAAGAGCCTAA
Protein sequence

>Msa0832030

MRDLEMLKLFMHQQKKQQKSLTGTSKAMNFVQIFSHFSGSAQLISSNGRFVELIKVGQDVVAELRKAIEKQDSVIVEHSNDGSGTGAVVLHFLLLLILITLMVSNYHVKMFIDKRMLFKVEVSDANLYRNWRSYTVKRMTMTEEIINRFLDLHGTSLGNDEENAAYVETVYELAYQNPVENIEVVDSSNKDEVAAADSVVTPTSKPLGKRSTDSVELLDDVVVHSSDGSATKELKLVDSTNKDDVAAVDSVVTPTSKSLGKRSADSVESADDIVLIDCDKRA*