Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834150 | XP_024640429.1 | 93.349 | 421 | 27 | 1 | 1 | 420 | 1 | 421 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834150 | sp|Q9FLC2|MO3_ARATH | 35.248 | 383 | 229 | 7 | 44 | 412 | 7 | 384 | 1.23e-76 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834150 | A0A396HMS3 | 93.349 | 421 | 27 | 1 | 1 | 420 | 1 | 421 | 0.0 | 792 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0833920 | Msa0834150 | 0.988967 | 3.829018e-176 | -8.615850e-47 |
| Msa0834150 | Msa1388060 | 0.998691 | 3.822736e-273 | -8.615850e-47 |
| Msa0329700 | Msa0834150 | 0.800032 | 1.743325e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834150 | MtrunA17_Chr5g0399671 | 93.349 | 421 | 27 | 1 | 1 | 420 | 1 | 421 | 0.0 | 792 |
| Msa0834150 | MtrunA17_Chr5g0399661 | 87.621 | 412 | 45 | 4 | 1 | 412 | 3 | 408 | 0.0 | 727 |
| Msa0834150 | MtrunA17_Chr1g0211181 | 42.857 | 378 | 206 | 5 | 43 | 412 | 9 | 384 | 1.05e-97 | 298 |
| Msa0834150 | MtrunA17_Chr1g0211141 | 40.741 | 378 | 215 | 4 | 43 | 412 | 2 | 378 | 9.42e-85 | 264 |
| Msa0834150 | MtrunA17_Chr1g0211171 | 40.576 | 382 | 211 | 5 | 46 | 412 | 9 | 389 | 1.95e-82 | 259 |
| Msa0834150 | MtrunA17_Chr1g0197161 | 40.104 | 384 | 217 | 5 | 41 | 412 | 4 | 386 | 3.24e-82 | 258 |
| Msa0834150 | MtrunA17_Chr1g0211151 | 37.240 | 384 | 228 | 5 | 41 | 412 | 4 | 386 | 3.91e-70 | 227 |
| Msa0834150 | MtrunA17_Chr4g0018001 | 28.500 | 200 | 133 | 3 | 205 | 394 | 2 | 201 | 1.62e-23 | 98.6 |
| Msa0834150 | MtrunA17_Chr8g0375081 | 27.027 | 370 | 235 | 14 | 46 | 392 | 83 | 440 | 3.18e-23 | 102 |
| Msa0834150 | MtrunA17_Chr4g0017991 | 40.000 | 130 | 58 | 1 | 43 | 172 | 6 | 115 | 8.48e-23 | 95.1 |
| Msa0834150 | MtrunA17_Chr5g0402211 | 25.789 | 380 | 245 | 13 | 37 | 392 | 69 | 435 | 9.36e-23 | 100 |
| Msa0834150 | MtrunA17_Chr4g0017951 | 53.521 | 71 | 33 | 0 | 43 | 113 | 6 | 76 | 2.82e-20 | 84.7 |
| Msa0834150 | MtrunA17_Chr4g0010391 | 28.980 | 245 | 161 | 8 | 143 | 383 | 166 | 401 | 9.30e-20 | 91.3 |
| Msa0834150 | MtrunA17_Chr4g0017981 | 32.203 | 118 | 74 | 1 | 283 | 394 | 4 | 121 | 1.39e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834150 | AT2G35660.1 | 67.164 | 402 | 131 | 1 | 11 | 412 | 13 | 413 | 0.0 | 564 |
| Msa0834150 | AT2G29720.1 | 65.271 | 406 | 138 | 2 | 8 | 412 | 8 | 411 | 0.0 | 534 |
| Msa0834150 | AT2G35660.2 | 69.900 | 299 | 90 | 0 | 114 | 412 | 1 | 299 | 6.79e-160 | 453 |
| Msa0834150 | AT2G35660.3 | 69.900 | 299 | 90 | 0 | 114 | 412 | 1 | 299 | 6.79e-160 | 453 |
| Msa0834150 | AT5G05320.1 | 35.248 | 383 | 229 | 7 | 44 | 412 | 7 | 384 | 1.25e-77 | 246 |
| Msa0834150 | AT4G38540.1 | 35.156 | 384 | 227 | 6 | 46 | 415 | 9 | 384 | 1.19e-71 | 231 |
| Msa0834150 | AT4G15760.1 | 32.676 | 355 | 217 | 7 | 54 | 394 | 39 | 385 | 3.05e-51 | 178 |
| Msa0834150 | AT4G15760.2 | 32.231 | 363 | 220 | 7 | 54 | 394 | 39 | 397 | 6.14e-51 | 177 |
| Msa0834150 | AT4G15765.1 | 27.451 | 306 | 162 | 7 | 46 | 339 | 6 | 263 | 4.56e-25 | 103 |
| Msa0834150 | AT5G67030.1 | 26.301 | 346 | 221 | 12 | 35 | 360 | 72 | 403 | 3.35e-23 | 102 |
| Msa0834150 | AT5G67030.2 | 26.301 | 346 | 221 | 12 | 35 | 360 | 72 | 403 | 4.38e-23 | 102 |
| Msa0834150 | AT4G15765.2 | 26.994 | 163 | 108 | 3 | 183 | 339 | 33 | 190 | 2.52e-12 | 65.9 |
| Msa0834150 | AT4G15765.5 | 26.994 | 163 | 108 | 3 | 183 | 339 | 33 | 190 | 2.52e-12 | 65.9 |
| Msa0834150 | AT4G15765.3 | 26.994 | 163 | 108 | 3 | 183 | 339 | 33 | 190 | 2.52e-12 | 65.9 |
| Msa0834150 | AT4G15765.4 | 26.994 | 163 | 108 | 3 | 183 | 339 | 33 | 190 | 2.52e-12 | 65.9 |
Find 124 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGCCTTGATTGTTAATT+TGG | 0.116957 | 5_4:-7183085 | None:intergenic |
| ATGTCTCAACAGATTGTAAT+AGG | 0.209668 | 5_4:+7184901 | Msa0834150:intron |
| GGATACCTTCTTGGAATTCT+TGG | 0.225203 | 5_4:+7184580 | Msa0834150:CDS |
| CAGGCTTGGTGTTCGGTCTT+TGG | 0.226551 | 5_4:+7183452 | Msa0834150:intron |
| ACCCACAAGGTTTGCCAGTA+TGG | 0.279042 | 5_4:-7185587 | None:intergenic |
| AGGTTTGCCAGTATGGTTAT+TGG | 0.287423 | 5_4:-7185580 | None:intergenic |
| TACACTTTGGTTGGAGAAAC+AGG | 0.298074 | 5_4:-7185087 | None:intergenic |
| CAAGCTCCTTGCCCAAGATT+TGG | 0.304518 | 5_4:-7185436 | None:intergenic |
| TGCCCAAGATTTGGAGTCAT+TGG | 0.325151 | 5_4:-7185427 | None:intergenic |
| TTGCCTTGTCGTACCAGAAT+TGG | 0.332839 | 5_4:+7183048 | Msa0834150:CDS |
| TCCAAATGGGGATACCTTCT+TGG | 0.343769 | 5_4:+7184571 | Msa0834150:CDS |
| AGTGGAGAGGAGGGTACTTT+TGG | 0.353165 | 5_4:+7184478 | Msa0834150:CDS |
| TGGTGTTCGGTCTTTGGTGC+TGG | 0.353894 | 5_4:+7183458 | Msa0834150:CDS |
| CCACAGGTGAATTACATCTA+TGG | 0.363265 | 5_4:+7185039 | Msa0834150:CDS |
| TCTCCACTGCACGCACCTCT+TGG | 0.364886 | 5_4:-7184463 | None:intergenic |
| ATATCGTAGGGATCCAATTC+TGG | 0.369127 | 5_4:-7183061 | None:intergenic |
| GTGAATTACATCTATGGAAA+AGG | 0.372345 | 5_4:+7185045 | Msa0834150:CDS |
| CATCCAATGACTCCAAATCT+TGG | 0.376057 | 5_4:+7185424 | Msa0834150:CDS |
| CTAAGGATCTAGTAGAAAAC+TGG | 0.383052 | 5_4:+7185263 | Msa0834150:CDS |
| CGATTACAACATGTTCCTTT+CGG | 0.387738 | 5_4:-7183119 | None:intergenic |
| TATAGTCTTGACTCCATTGA+TGG | 0.389182 | 5_4:+7185330 | Msa0834150:CDS |
| TCCAAGAAGGTATCCCCATT+TGG | 0.398453 | 5_4:-7184572 | None:intergenic |
| TGCTTTGAATTTCAAAGAAA+AGG | 0.412896 | 5_4:+7183735 | Msa0834150:CDS |
| TGGAGGGCACTTGATTCAAT+TGG | 0.413951 | 5_4:+7183537 | Msa0834150:CDS |
| ACCTTCTTGGAATTCTTGGA+TGG | 0.417941 | 5_4:+7184584 | Msa0834150:CDS |
| AAAAGGTTGTCCATCTGAAT+AGG | 0.421700 | 5_4:-7185013 | None:intergenic |
| TTTCTCCAACCAAAGTGTAT+TGG | 0.421909 | 5_4:+7185091 | Msa0834150:CDS |
| TCCATTATGTTTAGTAGCTC+CGG | 0.421971 | 5_4:-7185289 | None:intergenic |
| GAATTTCCAGGCTTGGTGTT+CGG | 0.422569 | 5_4:+7183445 | Msa0834150:intron |
| TCCGGAGCTACTAAACATAA+TGG | 0.432269 | 5_4:+7185288 | Msa0834150:CDS |
| CATTGATGGATCGATGGCTT+TGG | 0.441676 | 5_4:+7185344 | Msa0834150:CDS |
| ATGTTAGGAACAATATTGTC+AGG | 0.445129 | 5_4:+7185644 | Msa0834150:CDS |
| AAGATTGAACCAAGTCCAAA+TGG | 0.447760 | 5_4:+7184557 | Msa0834150:CDS |
| ACCATACTGGCAAACCTTGT+GGG | 0.451653 | 5_4:+7185586 | Msa0834150:CDS |
| ACTCAATATTTAGAAATTCA+AGG | 0.453429 | 5_4:+7183579 | Msa0834150:CDS |
| AGGAGCTTGTTGTGCTCTTG+AGG | 0.453532 | 5_4:+7185450 | Msa0834150:CDS |
| CATATTTCCAATAACCATAC+TGG | 0.459252 | 5_4:+7185573 | Msa0834150:CDS |
| CTTCTTTAGCACCGATGGCT+CGG | 0.460032 | 5_4:-7185236 | None:intergenic |
| ATCGTGGGTGGTGGCATAGC+AGG | 0.462878 | 5_4:+7183138 | Msa0834150:CDS |
| TTGTTAATTTGGAATATCGT+AGG | 0.467403 | 5_4:-7183074 | None:intergenic |
| ACCGATGGCTCGGTTGTTTG+AGG | 0.467547 | 5_4:-7185226 | None:intergenic |
| ATCTTCAATAGTTCATCTGC+AGG | 0.468683 | 5_4:+7185120 | Msa0834150:CDS |
| CAACTGCTCTATCCCTTCAC+AGG | 0.470796 | 5_4:+7183166 | Msa0834150:CDS |
| GCACAATAACCAACGTACTT+TGG | 0.472989 | 5_4:-7184973 | None:intergenic |
| ATCCAATGACTCCAAATCTT+GGG | 0.473366 | 5_4:+7185425 | Msa0834150:CDS |
| ACAACTCTACCTCTAGAAAC+AGG | 0.473445 | 5_4:-7185382 | None:intergenic |
| AAGGTATCCCCATTTGGACT+TGG | 0.476269 | 5_4:-7184566 | None:intergenic |
| ATACCATTCAATATTCTTCA+CGG | 0.476649 | 5_4:+7184528 | Msa0834150:CDS |
| ACAAACCAATACACTTTGGT+TGG | 0.478803 | 5_4:-7185096 | None:intergenic |
| AGGTGCGTGCAGTGGAGAGG+AGG | 0.485424 | 5_4:+7184468 | Msa0834150:CDS |
| GCTTGCTTCTTTAGCACCGA+TGG | 0.486635 | 5_4:-7185241 | None:intergenic |
| AGATTGAACCAAGTCCAAAT+GGG | 0.490772 | 5_4:+7184558 | Msa0834150:CDS |
| GAAGAATATTGAATGGTATC+CGG | 0.493585 | 5_4:-7184524 | None:intergenic |
| TGTCTCAACAGATTGTAATA+GGG | 0.495956 | 5_4:+7184902 | Msa0834150:intron |
| CCTTCTTGGAATTCTTGGAT+GGG | 0.498261 | 5_4:+7184585 | Msa0834150:CDS |
| TGTTAATTTGGAATATCGTA+GGG | 0.498991 | 5_4:-7183073 | None:intergenic |
| TGAATTACATCTATGGAAAA+GGG | 0.502725 | 5_4:+7185046 | Msa0834150:CDS |
| ACCCGCTGGTGTGTTATGTT+AGG | 0.502830 | 5_4:+7185629 | Msa0834150:CDS |
| CTCAATATTTAGAAATTCAA+GGG | 0.504248 | 5_4:+7183580 | Msa0834150:CDS |
| CAGTCAGAGTCACTTAGAAC+TGG | 0.505114 | 5_4:+7183483 | Msa0834150:CDS |
| CATTCAATATTCTTCACGGT+TGG | 0.508130 | 5_4:+7184532 | Msa0834150:CDS |
| GTCAAGACTATAGTGTCATC+CGG | 0.508571 | 5_4:-7185319 | None:intergenic |
| TAATTCACCTGTGGTTGAAA+AGG | 0.521016 | 5_4:-7185030 | None:intergenic |
| GAAACAGGTGGATTTATCAA+TGG | 0.522659 | 5_4:-7185367 | None:intergenic |
| CGGAGGTAGTTGTCCATCCA+AGG | 0.524864 | 5_4:-7184504 | None:intergenic |
| GATCATATGGCAATGAAAGA+TGG | 0.528214 | 5_4:+7185545 | Msa0834150:CDS |
| GATGACAAACCAATACACTT+TGG | 0.530182 | 5_4:-7185100 | None:intergenic |
| TCCTAACATAACACACCAGC+GGG | 0.532706 | 5_4:-7185630 | None:intergenic |
| AGAGGTAGAGTTGTACTCGT+TGG | 0.533800 | 5_4:+7185391 | Msa0834150:CDS |
| ATATTCCAAATTAACAATCA+AGG | 0.535648 | 5_4:+7183080 | Msa0834150:CDS |
| TGTGGGTTCGATTTCGCAGT+GGG | 0.537467 | 5_4:+7185603 | Msa0834150:CDS |
| TGACTCCATTGATGGATCGA+TGG | 0.537732 | 5_4:+7185338 | Msa0834150:CDS |
| TTGTGCTCTTGAGGATGCAG+TGG | 0.539243 | 5_4:+7185459 | Msa0834150:CDS |
| TCCTCAAACAACCGAGCCAT+CGG | 0.543389 | 5_4:+7185225 | Msa0834150:CDS |
| CAACCGTGAAGAATATTGAA+TGG | 0.545947 | 5_4:-7184531 | None:intergenic |
| AACCATACTGGCAAACCTTG+TGG | 0.548839 | 5_4:+7185585 | Msa0834150:CDS |
| AAGAGGTGCGTGCAGTGGAG+AGG | 0.550530 | 5_4:+7184465 | Msa0834150:CDS |
| CTTGGATGGACAACTACCTC+CGG | 0.550873 | 5_4:+7184505 | Msa0834150:CDS |
| CAAAGCCATCGATCCATCAA+TGG | 0.553794 | 5_4:-7185343 | None:intergenic |
| TTGTACTCGTTGGAGACGCT+TGG | 0.555295 | 5_4:+7185401 | Msa0834150:CDS |
| CAGCCAAGAGGTGCGTGCAG+TGG | 0.558479 | 5_4:+7184460 | Msa0834150:intron |
| GTTGGTTATTGTGCTTTCCG+TGG | 0.559926 | 5_4:+7184982 | Msa0834150:CDS |
| TATGGAAAAGGGTTACGTGC+AGG | 0.561657 | 5_4:+7185057 | Msa0834150:CDS |
| TCTAGTAGAAAACTGGCCTC+CGG | 0.564302 | 5_4:+7185270 | Msa0834150:CDS |
| TGGGTCTAAAATACTTGCAA+AGG | 0.566510 | 5_4:+7184604 | Msa0834150:CDS |
| TTCGATCGCCGATAGCTAAG+TGG | 0.571348 | 5_4:+7184935 | Msa0834150:CDS |
| GTACGACAAGGCAATGATGT+AGG | 0.573750 | 5_4:-7183039 | None:intergenic |
| AATCCCATCCACTTAGCTAT+CGG | 0.574558 | 5_4:-7184943 | None:intergenic |
| GGACTTGCCTCCTATTCAGA+TGG | 0.575892 | 5_4:+7185003 | Msa0834150:CDS |
| CCATAGATGTAATTCACCTG+TGG | 0.586219 | 5_4:-7185039 | None:intergenic |
| AAAGGAACATGTTGTAATCG+TGG | 0.586526 | 5_4:+7183122 | Msa0834150:CDS |
| AAGGAACATGTTGTAATCGT+GGG | 0.588781 | 5_4:+7183123 | Msa0834150:CDS |
| ATCGCCGATAGCTAAGTGGA+TGG | 0.589305 | 5_4:+7184939 | Msa0834150:CDS |
| GGTGCGTGCAGTGGAGAGGA+GGG | 0.589579 | 5_4:+7184469 | Msa0834150:CDS |
| CCCATCCAAGAATTCCAAGA+AGG | 0.591085 | 5_4:-7184585 | None:intergenic |
| ATGACTCCAAATCTTGGGCA+AGG | 0.595031 | 5_4:+7185430 | Msa0834150:CDS |
| TCAGAGTCACTTAGAACTGG+TGG | 0.596903 | 5_4:+7183486 | Msa0834150:CDS |
| AGGTTGTCCATCTGAATAGG+AGG | 0.597237 | 5_4:-7185010 | None:intergenic |
| ATAAATCCACCTGTTTCTAG+AGG | 0.600625 | 5_4:+7185373 | Msa0834150:CDS |
| CATGTTGTAATCGTGGGTGG+TGG | 0.604156 | 5_4:+7183129 | Msa0834150:CDS |
| ACTAGAGTTGAAACCTGTGA+AGG | 0.613474 | 5_4:-7183179 | None:intergenic |
| TCAATCTTCTGATGTCCGAA+AGG | 0.615839 | 5_4:+7183104 | Msa0834150:CDS |
| CAGATTGTAATAGGGTGCGA+CGG | 0.616990 | 5_4:+7184910 | Msa0834150:intron |
| TTGTGGGTTCGATTTCGCAG+TGG | 0.617057 | 5_4:+7185602 | Msa0834150:CDS |
| CTAGAGTTGAAACCTGTGAA+GGG | 0.619680 | 5_4:-7183178 | None:intergenic |
| TGTTAGGAACAATATTGTCA+GGG | 0.626479 | 5_4:+7185645 | Msa0834150:CDS |
| TCGCCGATAGCTAAGTGGAT+GGG | 0.626839 | 5_4:+7184940 | Msa0834150:CDS |
| GGTGCTAAAGAAGCAAGCTA+AGG | 0.629803 | 5_4:+7185246 | Msa0834150:CDS |
| AAACATAATGGATTCTACGC+CGG | 0.635624 | 5_4:+7185300 | Msa0834150:CDS |
| GATTGAACCAAGTCCAAATG+GGG | 0.644561 | 5_4:+7184559 | Msa0834150:CDS |
| ATTTCAAAGAAAAGGACGAA+AGG | 0.644711 | 5_4:+7183743 | Msa0834150:CDS |
| ATTATGTTTAGTAGCTCCGG+AGG | 0.647657 | 5_4:-7185286 | None:intergenic |
| CTGAATAGGAGGCAAGTCCA+CGG | 0.650582 | 5_4:-7184999 | None:intergenic |
| ATATTGTCAGGGACAGAGCG+AGG | 0.652754 | 5_4:+7185656 | Msa0834150:CDS |
| TGGGCTATTGTGCAGCCAAG+AGG | 0.656706 | 5_4:+7184448 | Msa0834150:intron |
| ATTGTGTTGAAATCTGAGGA+TGG | 0.657886 | 5_4:+7183700 | Msa0834150:CDS |
| ACTCTACCTCTAGAAACAGG+TGG | 0.665384 | 5_4:-7185379 | None:intergenic |
| GAAGGGATAGAGCAGTTGCA+AGG | 0.666482 | 5_4:-7183161 | None:intergenic |
| TTCCTAACATAACACACCAG+CGG | 0.671082 | 5_4:-7185631 | None:intergenic |
| CAGGATTGTGTTGAAATCTG+AGG | 0.674897 | 5_4:+7183696 | Msa0834150:intron |
| GAATATTGAATGGTATCCGG+AGG | 0.679865 | 5_4:-7184521 | None:intergenic |
| ACTGCGAAATCGAACCCACA+AGG | 0.681244 | 5_4:-7185600 | None:intergenic |
| GATCCAATTCTGGTACGACA+AGG | 0.683776 | 5_4:-7183051 | None:intergenic |
| GAACATGTTGTAATCGTGGG+TGG | 0.726429 | 5_4:+7183126 | Msa0834150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGATATTTATCATTAT+TGG | + | chr5_4:7183838-7183857 | Msa0834150:intron | 10.0% |
| !! | AATTATTTATGAAATGTATA+TGG | + | chr5_4:7184428-7184447 | Msa0834150:intron | 10.0% |
| !! | ATTATTTATGAAATGTATAT+GGG | + | chr5_4:7184429-7184448 | Msa0834150:intron | 10.0% |
| !!! | TTTACATTCACTTTTTTATT+AGG | - | chr5_4:7184003-7184022 | None:intergenic | 15.0% |
| !!! | ATATATTTGTCTTTTGTAAA+AGG | - | chr5_4:7184115-7184134 | None:intergenic | 15.0% |
| !! | AACTTAGTTGAAAAAATATT+TGG | + | chr5_4:7184704-7184723 | Msa0834150:intron | 15.0% |
| !! | GTAATTTAACTATATATGTA+TGG | - | chr5_4:7185161-7185180 | None:intergenic | 15.0% |
| !! | ATATTCCAAATTAACAATCA+AGG | + | chr5_4:7183080-7183099 | Msa0834150:CDS | 20.0% |
| !! | ACTCAATATTTAGAAATTCA+AGG | + | chr5_4:7183579-7183598 | Msa0834150:CDS | 20.0% |
| !! | CTCAATATTTAGAAATTCAA+GGG | + | chr5_4:7183580-7183599 | Msa0834150:CDS | 20.0% |
| !!! | CTAAATAATGTAGAGTTTTA+TGG | - | chr5_4:7183883-7183902 | None:intergenic | 20.0% |
| !! | AAATTCATTTCTAAATTGTG+GGG | - | chr5_4:7183943-7183962 | None:intergenic | 20.0% |
| !! | GAAATTCATTTCTAAATTGT+GGG | - | chr5_4:7183944-7183963 | None:intergenic | 20.0% |
| !! | TGAAATTCATTTCTAAATTG+TGG | - | chr5_4:7183945-7183964 | None:intergenic | 20.0% |
| !! | TTACAAAAGACAAATATATG+AGG | + | chr5_4:7184116-7184135 | Msa0834150:intron | 20.0% |
| !! | TACAAAAGACAAATATATGA+GGG | + | chr5_4:7184117-7184136 | Msa0834150:intron | 20.0% |
| !! | AGTTCGTAAAAAATTAATCA+CGG | - | chr5_4:7184688-7184707 | None:intergenic | 20.0% |
| !! | TGTTAATTTGGAATATCGTA+GGG | - | chr5_4:7183076-7183095 | None:intergenic | 25.0% |
| !! | TTGTTAATTTGGAATATCGT+AGG | - | chr5_4:7183077-7183096 | None:intergenic | 25.0% |
| !! | TGATTTTCTCAAACTATTAG+CGG | - | chr5_4:7183266-7183285 | None:intergenic | 25.0% |
| !! | TGCTTTGAATTTCAAAGAAA+AGG | + | chr5_4:7183735-7183754 | Msa0834150:CDS | 25.0% |
| !!! | TATCATTATTGGTTTTTGTC+CGG | + | chr5_4:7183849-7183868 | Msa0834150:intron | 25.0% |
| ! | AAAGAAAGACAAAAATCTGA+AGG | + | chr5_4:7184034-7184053 | Msa0834150:intron | 25.0% |
| ! | AATCATTTATAAACTATCCC+TGG | - | chr5_4:7184315-7184334 | None:intergenic | 25.0% |
| ! | TTTAGTCATTGATACATAGT+TGG | + | chr5_4:7184403-7184422 | Msa0834150:intron | 25.0% |
| ! | ATACCATTCAATATTCTTCA+CGG | + | chr5_4:7184528-7184547 | Msa0834150:CDS | 25.0% |
| !! | ATTGACTCATTGTGATTTAT+GGG | + | chr5_4:7184633-7184652 | Msa0834150:intron | 25.0% |
| ! | AAAGGATCTTACAAACATAA+TGG | + | chr5_4:7184829-7184848 | Msa0834150:intron | 25.0% |
| !!! | TCAATTTGTTAGCAGTTTTT+AGG | - | chr5_4:7184877-7184896 | None:intergenic | 25.0% |
| ! | TGAATTACATCTATGGAAAA+GGG | + | chr5_4:7185046-7185065 | Msa0834150:CDS | 25.0% |
| ! | TTTCATCTGAACAATAAACT+CGG | - | chr5_4:7185183-7185202 | None:intergenic | 25.0% |
| ! | TGAAAAATAGTTGAGTTCTA+TGG | + | chr5_4:7185198-7185217 | Msa0834150:intron | 25.0% |
| TTGAGCCTTGATTGTTAATT+TGG | - | chr5_4:7183088-7183107 | None:intergenic | 30.0% | |
| TGGTGATAAAGAATAGATTG+AGG | - | chr5_4:7183206-7183225 | None:intergenic | 30.0% | |
| ! | CCATCATTACTTTGATAACA+CGG | + | chr5_4:7183223-7183242 | Msa0834150:intron | 30.0% |
| GATATAAGAATTGTGCAACA+AGG | - | chr5_4:7183641-7183660 | None:intergenic | 30.0% | |
| GTTCATAAATTTGGCTATAC+AGG | + | chr5_4:7183677-7183696 | Msa0834150:intron | 30.0% | |
| ATTTCAAAGAAAAGGACGAA+AGG | + | chr5_4:7183743-7183762 | Msa0834150:CDS | 30.0% | |
| GAAATGAATTTCACATGAAG+TGG | + | chr5_4:7183952-7183971 | Msa0834150:intron | 30.0% | |
| !! | GAAGTATTGTGCTTTGTAAA+AGG | - | chr5_4:7184357-7184376 | None:intergenic | 30.0% |
| AGCACAATACTTCGAAAATT+TGG | + | chr5_4:7184364-7184383 | Msa0834150:intron | 30.0% | |
| AATACTTCGAAAATTTGGCT+TGG | + | chr5_4:7184369-7184388 | Msa0834150:intron | 30.0% | |
| ! | ATACTTCGAAAATTTGGCTT+GGG | + | chr5_4:7184370-7184389 | Msa0834150:intron | 30.0% |
| GAAGAATATTGAATGGTATC+CGG | - | chr5_4:7184527-7184546 | None:intergenic | 30.0% | |
| !! | CATTGACTCATTGTGATTTA+TGG | + | chr5_4:7184632-7184651 | Msa0834150:intron | 30.0% |
| TTGACTCATTGTGATTTATG+GGG | + | chr5_4:7184634-7184653 | Msa0834150:intron | 30.0% | |
| CTAAAAACATAGTGCACAAA+AGG | + | chr5_4:7184811-7184830 | Msa0834150:intron | 30.0% | |
| ATGTCTCAACAGATTGTAAT+AGG | + | chr5_4:7184901-7184920 | Msa0834150:intron | 30.0% | |
| TGTCTCAACAGATTGTAATA+GGG | + | chr5_4:7184902-7184921 | Msa0834150:intron | 30.0% | |
| GTGAATTACATCTATGGAAA+AGG | + | chr5_4:7185045-7185064 | Msa0834150:CDS | 30.0% | |
| CATATTTCCAATAACCATAC+TGG | + | chr5_4:7185573-7185592 | Msa0834150:CDS | 30.0% | |
| ATGTTAGGAACAATATTGTC+AGG | + | chr5_4:7185644-7185663 | Msa0834150:CDS | 30.0% | |
| TGTTAGGAACAATATTGTCA+GGG | + | chr5_4:7185645-7185664 | Msa0834150:CDS | 30.0% | |
| CGATTACAACATGTTCCTTT+CGG | - | chr5_4:7183122-7183141 | None:intergenic | 35.0% | |
| AAAGGAACATGTTGTAATCG+TGG | + | chr5_4:7183122-7183141 | Msa0834150:CDS | 35.0% | |
| AAGGAACATGTTGTAATCGT+GGG | + | chr5_4:7183123-7183142 | Msa0834150:CDS | 35.0% | |
| CCGTGTTATCAAAGTAATGA+TGG | - | chr5_4:7183226-7183245 | None:intergenic | 35.0% | |
| !! | GTTGAACTTGTTGAATTTCC+AGG | + | chr5_4:7183433-7183452 | Msa0834150:intron | 35.0% |
| ! | CTTGAGCTGGTTCATAAATT+TGG | + | chr5_4:7183668-7183687 | Msa0834150:intron | 35.0% |
| ATTGTGTTGAAATCTGAGGA+TGG | + | chr5_4:7183700-7183719 | Msa0834150:CDS | 35.0% | |
| AGGTATATAATTCTGCTGTG+TGG | + | chr5_4:7183763-7183782 | Msa0834150:intron | 35.0% | |
| TGGTTAGATCCATATGACAT+TGG | + | chr5_4:7183972-7183991 | Msa0834150:intron | 35.0% | |
| TAGGTGAAACCAATGTCATA+TGG | - | chr5_4:7183984-7184003 | None:intergenic | 35.0% | |
| !! | ATACCCTTTAGCCTTAACTA+GGG | + | chr5_4:7184240-7184259 | Msa0834150:intron | 35.0% |
| !!! | TGAGAGGTTTTTTAGTCTAC+TGG | - | chr5_4:7184275-7184294 | None:intergenic | 35.0% |
| !! | TTTGTAAAAGGCGTCTTCAT+AGG | - | chr5_4:7184345-7184364 | None:intergenic | 35.0% |
| CAACCGTGAAGAATATTGAA+TGG | - | chr5_4:7184534-7184553 | None:intergenic | 35.0% | |
| CATTCAATATTCTTCACGGT+TGG | + | chr5_4:7184532-7184551 | Msa0834150:CDS | 35.0% | |
| AAGATTGAACCAAGTCCAAA+TGG | + | chr5_4:7184557-7184576 | Msa0834150:CDS | 35.0% | |
| AGATTGAACCAAGTCCAAAT+GGG | + | chr5_4:7184558-7184577 | Msa0834150:CDS | 35.0% | |
| ! | TGGGTCTAAAATACTTGCAA+AGG | + | chr5_4:7184604-7184623 | Msa0834150:CDS | 35.0% |
| AAAAGGTTGTCCATCTGAAT+AGG | - | chr5_4:7185016-7185035 | None:intergenic | 35.0% | |
| TAATTCACCTGTGGTTGAAA+AGG | - | chr5_4:7185033-7185052 | None:intergenic | 35.0% | |
| TTTCTCCAACCAAAGTGTAT+TGG | + | chr5_4:7185091-7185110 | Msa0834150:CDS | 35.0% | |
| ACAAACCAATACACTTTGGT+TGG | - | chr5_4:7185099-7185118 | None:intergenic | 35.0% | |
| GATGACAAACCAATACACTT+TGG | - | chr5_4:7185103-7185122 | None:intergenic | 35.0% | |
| ATCTTCAATAGTTCATCTGC+AGG | + | chr5_4:7185120-7185139 | Msa0834150:CDS | 35.0% | |
| AAATAGTTGAGTTCTATGGC+AGG | + | chr5_4:7185202-7185221 | Msa0834150:intron | 35.0% | |
| CTAAGGATCTAGTAGAAAAC+TGG | + | chr5_4:7185263-7185282 | Msa0834150:CDS | 35.0% | |
| TCCATTATGTTTAGTAGCTC+CGG | - | chr5_4:7185292-7185311 | None:intergenic | 35.0% | |
| !! | AAACATAATGGATTCTACGC+CGG | + | chr5_4:7185300-7185319 | Msa0834150:CDS | 35.0% |
| ! | TATAGTCTTGACTCCATTGA+TGG | + | chr5_4:7185330-7185349 | Msa0834150:CDS | 35.0% |
| ! | GAAACAGGTGGATTTATCAA+TGG | - | chr5_4:7185370-7185389 | None:intergenic | 35.0% |
| !! | ATAAATCCACCTGTTTCTAG+AGG | + | chr5_4:7185373-7185392 | Msa0834150:CDS | 35.0% |
| ATCCAATGACTCCAAATCTT+GGG | + | chr5_4:7185425-7185444 | Msa0834150:CDS | 35.0% | |
| ! | GAAGACGCTTTTAGATCATA+TGG | + | chr5_4:7185532-7185551 | Msa0834150:CDS | 35.0% |
| GATCATATGGCAATGAAAGA+TGG | + | chr5_4:7185545-7185564 | Msa0834150:CDS | 35.0% | |
| ATATCGTAGGGATCCAATTC+TGG | - | chr5_4:7183064-7183083 | None:intergenic | 40.0% | |
| TCAATCTTCTGATGTCCGAA+AGG | + | chr5_4:7183104-7183123 | Msa0834150:CDS | 40.0% | |
| CTAGAGTTGAAACCTGTGAA+GGG | - | chr5_4:7183181-7183200 | None:intergenic | 40.0% | |
| ACTAGAGTTGAAACCTGTGA+AGG | - | chr5_4:7183182-7183201 | None:intergenic | 40.0% | |
| TCTCAAACTATTAGCGGTGT+CGG | - | chr5_4:7183260-7183279 | None:intergenic | 40.0% | |
| TATATGTGTGTGTGTGTGTG+TGG | + | chr5_4:7183309-7183328 | Msa0834150:intron | 40.0% | |
| GTGTTATCAGCTATGAAGCA+CGG | - | chr5_4:7183403-7183422 | None:intergenic | 40.0% | |
| ! | ACTTGTTGAATTTCCAGGCT+TGG | + | chr5_4:7183438-7183457 | Msa0834150:intron | 40.0% |
| TCACTCACCCTTTCCAAAAA+TGG | + | chr5_4:7183513-7183532 | Msa0834150:CDS | 40.0% | |
| CACTCACCCTTTCCAAAAAT+GGG | + | chr5_4:7183514-7183533 | Msa0834150:CDS | 40.0% | |
| CAGGATTGTGTTGAAATCTG+AGG | + | chr5_4:7183696-7183715 | Msa0834150:intron | 40.0% | |
| AGAAACTGAGACTAAGTCGT+CGG | + | chr5_4:7183901-7183920 | Msa0834150:intron | 40.0% | |
| !!! | TGTCTTTTGTAAAAGGTGCC+CGG | - | chr5_4:7184108-7184127 | None:intergenic | 40.0% |
| ! | TGAGGGTTTTTACAACTCTG+TGG | + | chr5_4:7184134-7184153 | Msa0834150:intron | 40.0% |
| !! | CATACCCTTTAGCCTTAACT+AGG | + | chr5_4:7184239-7184258 | Msa0834150:intron | 40.0% |
| !! | TACCCTTTAGCCTTAACTAG+GGG | + | chr5_4:7184241-7184260 | Msa0834150:intron | 40.0% |
| CTTGATTCTCAAGCAATGAG+AGG | - | chr5_4:7184291-7184310 | None:intergenic | 40.0% | |
| CTCTCATTGCTTGAGAATCA+AGG | + | chr5_4:7184289-7184308 | Msa0834150:intron | 40.0% | |
| !! | TCGAAAATTTGGCTTGGGTT+CGG | + | chr5_4:7184375-7184394 | Msa0834150:intron | 40.0% |
| !! | GTACTTTTGGAAACCTTGGA+TGG | + | chr5_4:7184491-7184510 | Msa0834150:CDS | 40.0% |
| GAATATTGAATGGTATCCGG+AGG | - | chr5_4:7184524-7184543 | None:intergenic | 40.0% | |
| GATTGAACCAAGTCCAAATG+GGG | + | chr5_4:7184559-7184578 | Msa0834150:CDS | 40.0% | |
| GGATACCTTCTTGGAATTCT+TGG | + | chr5_4:7184580-7184599 | Msa0834150:CDS | 40.0% | |
| ACCTTCTTGGAATTCTTGGA+TGG | + | chr5_4:7184584-7184603 | Msa0834150:CDS | 40.0% | |
| CCTTCTTGGAATTCTTGGAT+GGG | + | chr5_4:7184585-7184604 | Msa0834150:CDS | 40.0% | |
| AAGCTAACCACATGCATGAT+TGG | + | chr5_4:7184780-7184799 | Msa0834150:intron | 40.0% | |
| GTCATAACCAATCATGCATG+TGG | - | chr5_4:7184790-7184809 | None:intergenic | 40.0% | |
| GACCAGAGCTTCATGATTAT+TGG | - | chr5_4:7184855-7184874 | None:intergenic | 40.0% | |
| AATCCCATCCACTTAGCTAT+CGG | - | chr5_4:7184946-7184965 | None:intergenic | 40.0% | |
| ! | TTTTCTGAGCCAAAGTACGT+TGG | + | chr5_4:7184964-7184983 | Msa0834150:CDS | 40.0% |
| GCACAATAACCAACGTACTT+TGG | - | chr5_4:7184976-7184995 | None:intergenic | 40.0% | |
| CCATAGATGTAATTCACCTG+TGG | - | chr5_4:7185042-7185061 | None:intergenic | 40.0% | |
| CCACAGGTGAATTACATCTA+TGG | + | chr5_4:7185039-7185058 | Msa0834150:CDS | 40.0% | |
| TACACTTTGGTTGGAGAAAC+AGG | - | chr5_4:7185090-7185109 | None:intergenic | 40.0% | |
| ATTATGTTTAGTAGCTCCGG+AGG | - | chr5_4:7185289-7185308 | None:intergenic | 40.0% | |
| TCCGGAGCTACTAAACATAA+TGG | + | chr5_4:7185288-7185307 | Msa0834150:CDS | 40.0% | |
| GTCAAGACTATAGTGTCATC+CGG | - | chr5_4:7185322-7185341 | None:intergenic | 40.0% | |
| ! | ACAACTCTACCTCTAGAAAC+AGG | - | chr5_4:7185385-7185404 | None:intergenic | 40.0% |
| CATCCAATGACTCCAAATCT+TGG | + | chr5_4:7185424-7185443 | Msa0834150:CDS | 40.0% | |
| AGGTTTGCCAGTATGGTTAT+TGG | - | chr5_4:7185583-7185602 | None:intergenic | 40.0% | |
| TTCCTAACATAACACACCAG+CGG | - | chr5_4:7185634-7185653 | None:intergenic | 40.0% | |
| GTACGACAAGGCAATGATGT+AGG | - | chr5_4:7183042-7183061 | None:intergenic | 45.0% | |
| TTGCCTTGTCGTACCAGAAT+TGG | + | chr5_4:7183048-7183067 | Msa0834150:CDS | 45.0% | |
| GATCCAATTCTGGTACGACA+AGG | - | chr5_4:7183054-7183073 | None:intergenic | 45.0% | |
| GAACATGTTGTAATCGTGGG+TGG | + | chr5_4:7183126-7183145 | Msa0834150:CDS | 45.0% | |
| TCCTCATATTAGCCGTGATC+CGG | - | chr5_4:7183376-7183395 | None:intergenic | 45.0% | |
| !! | GAATTTCCAGGCTTGGTGTT+CGG | + | chr5_4:7183445-7183464 | Msa0834150:intron | 45.0% |
| CAGTCAGAGTCACTTAGAAC+TGG | + | chr5_4:7183483-7183502 | Msa0834150:CDS | 45.0% | |
| TCAGAGTCACTTAGAACTGG+TGG | + | chr5_4:7183486-7183505 | Msa0834150:CDS | 45.0% | |
| TCACCCTTTCCAAAAATGGG+TGG | + | chr5_4:7183517-7183536 | Msa0834150:CDS | 45.0% | |
| !! | CCTCCACCCATTTTTGGAAA+GGG | - | chr5_4:7183523-7183542 | None:intergenic | 45.0% |
| CCTTTCCAAAAATGGGTGGA+GGG | + | chr5_4:7183521-7183540 | Msa0834150:CDS | 45.0% | |
| !! | TGGAGGGCACTTGATTCAAT+TGG | + | chr5_4:7183537-7183556 | Msa0834150:CDS | 45.0% |
| TATATCAGCTGAGCTTGAGC+TGG | + | chr5_4:7183655-7183674 | Msa0834150:intron | 45.0% | |
| !! | GAGTTTTATGGTGCACTGAC+CGG | - | chr5_4:7183871-7183890 | None:intergenic | 45.0% |
| GAAACTGAGACTAAGTCGTC+GGG | + | chr5_4:7183902-7183921 | Msa0834150:intron | 45.0% | |
| ACTCACACTCTTCAACTACC+CGG | + | chr5_4:7184086-7184105 | Msa0834150:intron | 45.0% | |
| !!! | GTCTTTTGTAAAAGGTGCCC+GGG | - | chr5_4:7184107-7184126 | None:intergenic | 45.0% |
| TGGACAAGACCTCGAAAATG+TGG | + | chr5_4:7184154-7184173 | Msa0834150:intron | 45.0% | |
| GAAACATTAGCACGCCACAT+AGG | + | chr5_4:7184186-7184205 | Msa0834150:intron | 45.0% | |
| GCATACATTCGACTCCTATG+TGG | - | chr5_4:7184203-7184222 | None:intergenic | 45.0% | |
| GAGTCGAATGTATGCCATGT+TGG | + | chr5_4:7184208-7184227 | Msa0834150:intron | 45.0% | |
| TCGAATGTATGCCATGTTGG+AGG | + | chr5_4:7184211-7184230 | Msa0834150:intron | 45.0% | |
| GGTATGTTAGACCTCCAACA+TGG | - | chr5_4:7184225-7184244 | None:intergenic | 45.0% | |
| AGCCCCTAGTTAAGGCTAAA+GGG | - | chr5_4:7184246-7184265 | None:intergenic | 45.0% | |
| TAGCCCCTAGTTAAGGCTAA+AGG | - | chr5_4:7184247-7184266 | None:intergenic | 45.0% | |
| ATTGCTTGAGAATCAAGGCC+AGG | + | chr5_4:7184294-7184313 | Msa0834150:intron | 45.0% | |
| TTGCTTGAGAATCAAGGCCA+GGG | + | chr5_4:7184295-7184314 | Msa0834150:intron | 45.0% | |
| ! | AAGGCGTCTTCATAGGTTGA+GGG | - | chr5_4:7184338-7184357 | None:intergenic | 45.0% |
| !! | AAAGGCGTCTTCATAGGTTG+AGG | - | chr5_4:7184339-7184358 | None:intergenic | 45.0% |
| !!! | GAGGGTACTTTTGGAAACCT+TGG | + | chr5_4:7184487-7184506 | Msa0834150:CDS | 45.0% |
| ! | AAGGTATCCCCATTTGGACT+TGG | - | chr5_4:7184569-7184588 | None:intergenic | 45.0% |
| TCCAAATGGGGATACCTTCT+TGG | + | chr5_4:7184571-7184590 | Msa0834150:CDS | 45.0% | |
| !! | TCCAAGAAGGTATCCCCATT+TGG | - | chr5_4:7184575-7184594 | None:intergenic | 45.0% |
| CCCATCCAAGAATTCCAAGA+AGG | - | chr5_4:7184588-7184607 | None:intergenic | 45.0% | |
| GGCCAATAATCATGAAGCTC+TGG | + | chr5_4:7184850-7184869 | Msa0834150:intron | 45.0% | |
| CAGATTGTAATAGGGTGCGA+CGG | + | chr5_4:7184910-7184929 | Msa0834150:intron | 45.0% | |
| GTTGGTTATTGTGCTTTCCG+TGG | + | chr5_4:7184982-7185001 | Msa0834150:CDS | 45.0% | |
| AGGTTGTCCATCTGAATAGG+AGG | - | chr5_4:7185013-7185032 | None:intergenic | 45.0% | |
| ! | TGGACAACCTTTTCAACCAC+AGG | + | chr5_4:7185023-7185042 | Msa0834150:CDS | 45.0% |
| TATGGAAAAGGGTTACGTGC+AGG | + | chr5_4:7185057-7185076 | Msa0834150:CDS | 45.0% | |
| GGTGCTAAAGAAGCAAGCTA+AGG | + | chr5_4:7185246-7185265 | Msa0834150:CDS | 45.0% | |
| ! | TCTAGTAGAAAACTGGCCTC+CGG | + | chr5_4:7185270-7185289 | Msa0834150:CDS | 45.0% |
| ! | TGACTCCATTGATGGATCGA+TGG | + | chr5_4:7185338-7185357 | Msa0834150:CDS | 45.0% |
| CAAAGCCATCGATCCATCAA+TGG | - | chr5_4:7185346-7185365 | None:intergenic | 45.0% | |
| ! | CATTGATGGATCGATGGCTT+TGG | + | chr5_4:7185344-7185363 | Msa0834150:CDS | 45.0% |
| ! | ACTCTACCTCTAGAAACAGG+TGG | - | chr5_4:7185382-7185401 | None:intergenic | 45.0% |
| AGAGGTAGAGTTGTACTCGT+TGG | + | chr5_4:7185391-7185410 | Msa0834150:CDS | 45.0% | |
| ! | TGCCCAAGATTTGGAGTCAT+TGG | - | chr5_4:7185430-7185449 | None:intergenic | 45.0% |
| ATGACTCCAAATCTTGGGCA+AGG | + | chr5_4:7185430-7185449 | Msa0834150:CDS | 45.0% | |
| AACCATACTGGCAAACCTTG+TGG | + | chr5_4:7185585-7185604 | Msa0834150:CDS | 45.0% | |
| ACCATACTGGCAAACCTTGT+GGG | + | chr5_4:7185586-7185605 | Msa0834150:CDS | 45.0% | |
| TCCTAACATAACACACCAGC+GGG | - | chr5_4:7185633-7185652 | None:intergenic | 45.0% | |
| CATGTTGTAATCGTGGGTGG+TGG | + | chr5_4:7183129-7183148 | Msa0834150:CDS | 50.0% | |
| GAAGGGATAGAGCAGTTGCA+AGG | - | chr5_4:7183164-7183183 | None:intergenic | 50.0% | |
| CAACTGCTCTATCCCTTCAC+AGG | + | chr5_4:7183166-7183185 | Msa0834150:CDS | 50.0% | |
| TGTGTGGTGTGTGTGTGTGT+TGG | + | chr5_4:7183325-7183344 | Msa0834150:intron | 50.0% | |
| ! | GTGTGTGTGTGTGTTGGTGT+TGG | + | chr5_4:7183331-7183350 | Msa0834150:intron | 50.0% |
| TATTAGCCGTGATCCGGTGT+CGG | - | chr5_4:7183370-7183389 | None:intergenic | 50.0% | |
| ACCGGATCACGGCTAATATG+AGG | + | chr5_4:7183372-7183391 | Msa0834150:intron | 50.0% | |
| CCCTTTCCAAAAATGGGTGG+AGG | + | chr5_4:7183520-7183539 | Msa0834150:CDS | 50.0% | |
| !! | CCCTCCACCCATTTTTGGAA+AGG | - | chr5_4:7183524-7183543 | None:intergenic | 50.0% |
| ! | AAGTGCCCTCCACCCATTTT+TGG | - | chr5_4:7183529-7183548 | None:intergenic | 50.0% |
| CTCACACTCTTCAACTACCC+GGG | + | chr5_4:7184087-7184106 | Msa0834150:intron | 50.0% | |
| ! | GAGCTCAAGCCACATTTTCG+AGG | - | chr5_4:7184166-7184185 | None:intergenic | 50.0% |
| GGAACAGTAGCCCCTAGTTA+AGG | - | chr5_4:7184254-7184273 | None:intergenic | 50.0% | |
| !!! | AGTGGAGAGGAGGGTACTTT+TGG | + | chr5_4:7184478-7184497 | Msa0834150:CDS | 50.0% |
| CTTGGATGGACAACTACCTC+CGG | + | chr5_4:7184505-7184524 | Msa0834150:CDS | 50.0% | |
| TTCGATCGCCGATAGCTAAG+TGG | + | chr5_4:7184935-7184954 | Msa0834150:CDS | 50.0% | |
| ATCGCCGATAGCTAAGTGGA+TGG | + | chr5_4:7184939-7184958 | Msa0834150:CDS | 50.0% | |
| TCGCCGATAGCTAAGTGGAT+GGG | + | chr5_4:7184940-7184959 | Msa0834150:CDS | 50.0% | |
| CTGAATAGGAGGCAAGTCCA+CGG | - | chr5_4:7185002-7185021 | None:intergenic | 50.0% | |
| GGACTTGCCTCCTATTCAGA+TGG | + | chr5_4:7185003-7185022 | Msa0834150:CDS | 50.0% | |
| TCCTCAAACAACCGAGCCAT+CGG | + | chr5_4:7185225-7185244 | Msa0834150:CDS | 50.0% | |
| !! | CTTCTTTAGCACCGATGGCT+CGG | - | chr5_4:7185239-7185258 | None:intergenic | 50.0% |
| ! | GCTTGCTTCTTTAGCACCGA+TGG | - | chr5_4:7185244-7185263 | None:intergenic | 50.0% |
| TTGTACTCGTTGGAGACGCT+TGG | + | chr5_4:7185401-7185420 | Msa0834150:CDS | 50.0% | |
| CAAGCTCCTTGCCCAAGATT+TGG | - | chr5_4:7185439-7185458 | None:intergenic | 50.0% | |
| !! | AGGAGCTTGTTGTGCTCTTG+AGG | + | chr5_4:7185450-7185469 | Msa0834150:CDS | 50.0% |
| TTGTGCTCTTGAGGATGCAG+TGG | + | chr5_4:7185459-7185478 | Msa0834150:CDS | 50.0% | |
| ACCCACAAGGTTTGCCAGTA+TGG | - | chr5_4:7185590-7185609 | None:intergenic | 50.0% | |
| ACTGCGAAATCGAACCCACA+AGG | - | chr5_4:7185603-7185622 | None:intergenic | 50.0% | |
| TTGTGGGTTCGATTTCGCAG+TGG | + | chr5_4:7185602-7185621 | Msa0834150:CDS | 50.0% | |
| TGTGGGTTCGATTTCGCAGT+GGG | + | chr5_4:7185603-7185622 | Msa0834150:CDS | 50.0% | |
| ACCCGCTGGTGTGTTATGTT+AGG | + | chr5_4:7185629-7185648 | Msa0834150:CDS | 50.0% | |
| ATATTGTCAGGGACAGAGCG+AGG | + | chr5_4:7185656-7185675 | Msa0834150:CDS | 50.0% | |
| CAAAGACCGAACACCAAGCC+TGG | - | chr5_4:7183454-7183473 | None:intergenic | 55.0% | |
| !! | CAGGCTTGGTGTTCGGTCTT+TGG | + | chr5_4:7183452-7183471 | Msa0834150:intron | 55.0% |
| ! | TGGTGTTCGGTCTTTGGTGC+TGG | + | chr5_4:7183458-7183477 | Msa0834150:CDS | 55.0% |
| ACTGAGACTAAGTCGTCGGG+TGG | + | chr5_4:7183905-7183924 | Msa0834150:intron | 55.0% | |
| TGGGCTATTGTGCAGCCAAG+AGG | + | chr5_4:7184448-7184467 | Msa0834150:intron | 55.0% | |
| CGGAGGTAGTTGTCCATCCA+AGG | - | chr5_4:7184507-7184526 | None:intergenic | 55.0% | |
| !! | ACCGATGGCTCGGTTGTTTG+AGG | - | chr5_4:7185229-7185248 | None:intergenic | 55.0% |
| ! | ATCGTGGGTGGTGGCATAGC+AGG | + | chr5_4:7183138-7183157 | Msa0834150:CDS | 60.0% |
| CCACGATACGTGTCCGACAC+CGG | + | chr5_4:7183354-7183373 | Msa0834150:intron | 60.0% | |
| ACGTGTCCGACACCGGATCA+CGG | + | chr5_4:7183361-7183380 | Msa0834150:intron | 60.0% | |
| TCTCCACTGCACGCACCTCT+TGG | - | chr5_4:7184466-7184485 | None:intergenic | 60.0% | |
| ! | AAGAGGTGCGTGCAGTGGAG+AGG | + | chr5_4:7184465-7184484 | Msa0834150:CDS | 60.0% |
| ! | CCGGTGTCGGACACGTATCG+TGG | - | chr5_4:7183357-7183376 | None:intergenic | 65.0% |
| ! | CAGCCAAGAGGTGCGTGCAG+TGG | + | chr5_4:7184460-7184479 | Msa0834150:intron | 65.0% |
| AGGTGCGTGCAGTGGAGAGG+AGG | + | chr5_4:7184468-7184487 | Msa0834150:CDS | 65.0% | |
| GGTGCGTGCAGTGGAGAGGA+GGG | + | chr5_4:7184469-7184488 | Msa0834150:CDS | 65.0% | |
| TTCGCAGTGGGACAACCCGC+TGG | + | chr5_4:7185615-7185634 | Msa0834150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7182997 | 7185690 | 7182997 | ID=Msa0834150;Name=Msa0834150 |
| chr5_4 | mRNA | 7182997 | 7185690 | 7182997 | ID=Msa0834150-mRNA-1;Parent=Msa0834150;Name=Msa0834150-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.2|0.16|1|1|1|6|0|420 |
| chr5_4 | exon | 7182997 | 7183187 | 7182997 | ID=Msa0834150-mRNA-1:exon:3214;Parent=Msa0834150-mRNA-1 |
| chr5_4 | exon | 7183455 | 7183601 | 7183455 | ID=Msa0834150-mRNA-1:exon:3215;Parent=Msa0834150-mRNA-1 |
| chr5_4 | exon | 7183699 | 7183764 | 7183699 | ID=Msa0834150-mRNA-1:exon:3216;Parent=Msa0834150-mRNA-1 |
| chr5_4 | exon | 7184463 | 7184625 | 7184463 | ID=Msa0834150-mRNA-1:exon:3217;Parent=Msa0834150-mRNA-1 |
| chr5_4 | exon | 7184913 | 7185141 | 7184913 | ID=Msa0834150-mRNA-1:exon:3218;Parent=Msa0834150-mRNA-1 |
| chr5_4 | exon | 7185224 | 7185690 | 7185224 | ID=Msa0834150-mRNA-1:exon:3219;Parent=Msa0834150-mRNA-1 |
| chr5_4 | CDS | 7182997 | 7183187 | 7182997 | ID=Msa0834150-mRNA-1:cds;Parent=Msa0834150-mRNA-1 |
| chr5_4 | CDS | 7183455 | 7183601 | 7183455 | ID=Msa0834150-mRNA-1:cds;Parent=Msa0834150-mRNA-1 |
| chr5_4 | CDS | 7183699 | 7183764 | 7183699 | ID=Msa0834150-mRNA-1:cds;Parent=Msa0834150-mRNA-1 |
| chr5_4 | CDS | 7184463 | 7184625 | 7184463 | ID=Msa0834150-mRNA-1:cds;Parent=Msa0834150-mRNA-1 |
| chr5_4 | CDS | 7184913 | 7185141 | 7184913 | ID=Msa0834150-mRNA-1:cds;Parent=Msa0834150-mRNA-1 |
| chr5_4 | CDS | 7185224 | 7185690 | 7185224 | ID=Msa0834150-mRNA-1:cds;Parent=Msa0834150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
