Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834800 | XP_003611502.2 | 88.110 | 328 | 15 | 2 | 18 | 323 | 1 | 326 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834800 | sp|Q1PF16|BH019_ARATH | 37.838 | 185 | 88 | 3 | 163 | 320 | 111 | 295 | 2.66e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834800 | G7K134 | 88.110 | 328 | 15 | 2 | 18 | 323 | 1 | 326 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710900 | Msa0834800 | 0.851828 | 6.882622e-61 | -8.615850e-47 |
| Msa0754590 | Msa0834800 | 0.838136 | 3.439590e-57 | -8.615850e-47 |
| Msa0834800 | Msa1392850 | 0.844613 | 6.782866e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834800 | MtrunA17_Chr5g0400671 | 88.110 | 328 | 15 | 2 | 18 | 323 | 1 | 326 | 0.0 | 557 |
| Msa0834800 | MtrunA17_Chr4g0054561 | 43.220 | 354 | 119 | 16 | 18 | 319 | 1 | 324 | 2.67e-65 | 208 |
| Msa0834800 | MtrunA17_Chr4g0054551 | 40.960 | 354 | 127 | 16 | 18 | 319 | 1 | 324 | 7.09e-61 | 197 |
| Msa0834800 | MtrunA17_Chr2g0280161 | 32.370 | 346 | 186 | 12 | 19 | 318 | 5 | 348 | 3.23e-37 | 136 |
| Msa0834800 | MtrunA17_Chr4g0049331 | 30.031 | 323 | 174 | 11 | 32 | 319 | 1 | 306 | 2.19e-33 | 125 |
| Msa0834800 | MtrunA17_Chr4g0002781 | 37.037 | 189 | 93 | 2 | 158 | 320 | 161 | 349 | 3.16e-32 | 122 |
| Msa0834800 | MtrunA17_Chr4g0002801 | 34.081 | 223 | 112 | 3 | 133 | 320 | 108 | 330 | 2.54e-31 | 120 |
| Msa0834800 | MtrunA17_Chr8g0336681 | 35.829 | 187 | 90 | 3 | 164 | 320 | 149 | 335 | 4.22e-30 | 117 |
| Msa0834800 | MtrunA17_Chr5g0400661 | 33.613 | 238 | 115 | 7 | 121 | 320 | 102 | 334 | 5.69e-30 | 116 |
| Msa0834800 | MtrunA17_Chr2g0333621 | 31.373 | 255 | 133 | 6 | 92 | 320 | 73 | 311 | 4.23e-29 | 113 |
| Msa0834800 | MtrunA17_Chr4g0033391 | 36.158 | 177 | 93 | 2 | 164 | 320 | 140 | 316 | 1.36e-27 | 110 |
| Msa0834800 | MtrunA17_Chr5g0400621 | 31.559 | 263 | 138 | 5 | 80 | 318 | 83 | 327 | 2.57e-27 | 109 |
| Msa0834800 | MtrunA17_Chr7g0225901 | 39.355 | 155 | 71 | 4 | 168 | 299 | 85 | 239 | 3.67e-26 | 104 |
| Msa0834800 | MtrunA17_Chr4g0033291 | 34.171 | 199 | 106 | 4 | 143 | 320 | 130 | 324 | 1.05e-25 | 104 |
| Msa0834800 | MtrunA17_Chr6g0468491 | 34.483 | 174 | 91 | 2 | 166 | 316 | 132 | 305 | 1.71e-25 | 103 |
| Msa0834800 | MtrunA17_Chr2g0333611 | 33.514 | 185 | 92 | 6 | 162 | 320 | 36 | 215 | 2.77e-25 | 101 |
| Msa0834800 | MtrunA17_Chr2g0307131 | 35.106 | 188 | 94 | 4 | 158 | 317 | 161 | 348 | 2.45e-24 | 101 |
| Msa0834800 | MtrunA17_Chr2g0307141 | 35.465 | 172 | 88 | 3 | 169 | 317 | 181 | 352 | 3.06e-24 | 101 |
| Msa0834800 | MtrunA17_Chr4g0054581 | 33.673 | 196 | 98 | 6 | 155 | 320 | 181 | 374 | 5.15e-24 | 100 |
| Msa0834800 | MtrunA17_Chr7g0249811 | 33.721 | 172 | 98 | 2 | 164 | 320 | 158 | 328 | 1.13e-23 | 99.4 |
| Msa0834800 | MtrunA17_Chr2g0333541 | 35.135 | 185 | 93 | 4 | 164 | 322 | 87 | 270 | 2.52e-23 | 97.4 |
| Msa0834800 | MtrunA17_Chr2g0333641 | 29.880 | 251 | 128 | 7 | 104 | 319 | 69 | 306 | 5.22e-23 | 97.1 |
| Msa0834800 | MtrunA17_Chr4g0054621 | 28.962 | 183 | 113 | 3 | 155 | 320 | 155 | 337 | 6.53e-21 | 91.7 |
| Msa0834800 | MtrunA17_Chr4g0033281 | 29.146 | 199 | 115 | 4 | 143 | 320 | 128 | 321 | 4.54e-20 | 89.4 |
| Msa0834800 | MtrunA17_Chr5g0400641 | 34.211 | 152 | 77 | 2 | 174 | 302 | 1 | 152 | 7.05e-20 | 85.1 |
| Msa0834800 | MtrunA17_Chr4g0054571 | 27.575 | 301 | 158 | 9 | 62 | 320 | 47 | 329 | 4.08e-17 | 80.9 |
| Msa0834800 | MtrunA17_Chr6g0468461 | 32.692 | 156 | 70 | 2 | 166 | 299 | 168 | 310 | 4.13e-17 | 80.9 |
| Msa0834800 | MtrunA17_Chr4g0002851 | 38.636 | 88 | 54 | 0 | 235 | 322 | 111 | 198 | 1.57e-12 | 65.5 |
| Msa0834800 | MtrunA17_Chr4g0002831 | 32.979 | 94 | 63 | 0 | 229 | 322 | 113 | 206 | 2.03e-12 | 65.5 |
| Msa0834800 | MtrunA17_Chr7g0233441 | 34.043 | 94 | 62 | 0 | 229 | 322 | 105 | 198 | 3.43e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834800 | AT2G22760.1 | 37.838 | 185 | 88 | 3 | 163 | 320 | 111 | 295 | 2.71e-33 | 124 |
| Msa0834800 | AT4G37850.2 | 31.176 | 340 | 179 | 14 | 19 | 319 | 1 | 324 | 5.30e-33 | 124 |
| Msa0834800 | AT4G37850.1 | 31.176 | 340 | 179 | 14 | 19 | 319 | 1 | 324 | 5.30e-33 | 124 |
| Msa0834800 | AT2G22760.2 | 39.264 | 163 | 73 | 2 | 163 | 299 | 111 | 273 | 9.21e-31 | 117 |
| Msa0834800 | AT2G22750.5 | 29.825 | 342 | 146 | 15 | 19 | 301 | 1 | 307 | 1.11e-29 | 115 |
| Msa0834800 | AT2G22750.3 | 29.825 | 342 | 146 | 15 | 19 | 301 | 5 | 311 | 1.14e-29 | 115 |
| Msa0834800 | AT2G22750.4 | 29.825 | 342 | 146 | 15 | 19 | 301 | 5 | 311 | 3.12e-29 | 114 |
| Msa0834800 | AT2G22750.2 | 38.068 | 176 | 62 | 5 | 163 | 301 | 118 | 283 | 2.65e-27 | 108 |
| Msa0834800 | AT2G22750.1 | 38.068 | 176 | 62 | 5 | 163 | 301 | 118 | 283 | 8.01e-27 | 107 |
| Msa0834800 | AT2G22770.1 | 33.175 | 211 | 101 | 4 | 149 | 319 | 108 | 318 | 1.17e-22 | 96.7 |
Find 85 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCAACTGGTTAATTT+TGG | 0.110602 | 5_4:+7990698 | None:intergenic |
| TTTCTCATCTTACACCAATT+TGG | 0.189336 | 5_4:-7993394 | None:intergenic |
| GATACTCTTACTTCGATTTC+AGG | 0.236620 | 5_4:+7991526 | None:intergenic |
| CCTGTTTGTGAAAAGGTTCT+AGG | 0.243730 | 5_4:-7990263 | Msa0834800:three_prime_UTR |
| GTTTCAACTGGGAAACAATT+TGG | 0.250112 | 5_4:+7992743 | None:intergenic |
| TACTTTGGACAGTGAGATTA+AGG | 0.260165 | 5_4:+7991425 | None:intergenic |
| TTCAGGAAGTGGTTGGTTAT+TGG | 0.276191 | 5_4:+7991543 | None:intergenic |
| GCTCTTTCAGCCATTGTTCC+TGG | 0.288584 | 5_4:-7992374 | Msa0834800:CDS |
| CCAAAGTTGTCGAATAATAT+TGG | 0.304765 | 5_4:+7992794 | None:intergenic |
| TGTCCTTTGATAAGGATTCT+AGG | 0.308395 | 5_4:-7990601 | Msa0834800:three_prime_UTR |
| CTTCTTTCCTGTTTGTGAAA+AGG | 0.311566 | 5_4:-7990270 | Msa0834800:three_prime_UTR |
| TCGAGCTTGAGCAGTGTTCC+TGG | 0.329696 | 5_4:+7992451 | None:intergenic |
| AGAGAGTTAATATTCCAAAT+TGG | 0.339623 | 5_4:+7993380 | None:intergenic |
| GATTAAAATATTCCTTCAAC+TGG | 0.373209 | 5_4:+7990688 | None:intergenic |
| CATCACAGGACCTTCCTTCA+TGG | 0.375414 | 5_4:+7990568 | None:intergenic |
| CGATTTGATTAGATGTGGTA+TGG | 0.375743 | 5_4:+7993151 | None:intergenic |
| AATGAATTGAGGTGATGAAT+AGG | 0.381227 | 5_4:+7992661 | None:intergenic |
| CATTGTTCCTGGCCTCAAAA+AGG | 0.384959 | 5_4:-7992363 | Msa0834800:intron |
| TCATCAAGATGAGTTTCAAC+TGG | 0.389714 | 5_4:+7992731 | None:intergenic |
| CTTCCAGCTTTGGTTTCTCA+AGG | 0.393979 | 5_4:-7992527 | Msa0834800:CDS |
| TAAAATTGCTTAGAAGCAAT+TGG | 0.399867 | 5_4:+7992614 | None:intergenic |
| GTTGTTTCCAAAGGGCAAAA+AGG | 0.400410 | 5_4:+7991399 | None:intergenic |
| CCAATATTATTCGACAACTT+TGG | 0.407380 | 5_4:-7992794 | Msa0834800:CDS |
| AGTAGTATGCTTACAAGTTC+AGG | 0.414356 | 5_4:+7993075 | None:intergenic |
| AGAAGCAATTGGTGTTGAAC+TGG | 0.425456 | 5_4:+7992625 | None:intergenic |
| AAATAAATTAGAAGAGAAAG+TGG | 0.442399 | 5_4:+7993350 | None:intergenic |
| TGTGACAGCAAAGGATCTCC+TGG | 0.446189 | 5_4:-7990746 | Msa0834800:CDS |
| CAAGAGAATCCATCGGGTAT+TGG | 0.448559 | 5_4:+7992822 | None:intergenic |
| GTCCTTTGATAAGGATTCTA+GGG | 0.456194 | 5_4:-7990600 | Msa0834800:three_prime_UTR |
| TGAAAGAGCGATGAAACTTC+GGG | 0.456547 | 5_4:+7992388 | None:intergenic |
| ATCCAAAATTAACCAGTTGA+AGG | 0.460869 | 5_4:-7990700 | Msa0834800:exon |
| GGACGTGCCGCTACGGTGCT+TGG | 0.467945 | 5_4:-7991460 | Msa0834800:CDS |
| ATCAACAATGTTGTTTCCAA+AGG | 0.469768 | 5_4:+7991390 | None:intergenic |
| TCAACAATGTTGTTTCCAAA+GGG | 0.475298 | 5_4:+7991391 | None:intergenic |
| TGATGTAACCATTGTTGCTC+AGG | 0.479291 | 5_4:-7991371 | Msa0834800:intron |
| CTGAAAGAGCGATGAAACTT+CGG | 0.488970 | 5_4:+7992387 | None:intergenic |
| TGAGGTGATGAATAGGAAGA+AGG | 0.490585 | 5_4:+7992668 | None:intergenic |
| AAGCCTGTCGTATGCTTCCC+AGG | 0.497417 | 5_4:+7990728 | None:intergenic |
| TTCTACAACATGTTCTGGGT+CGG | 0.501517 | 5_4:-7990473 | Msa0834800:three_prime_UTR |
| ATTAACAATTACACATGTGA+TGG | 0.502857 | 5_4:+7990360 | None:intergenic |
| CTTCGATTTCAGGAAGTGGT+TGG | 0.508259 | 5_4:+7991536 | None:intergenic |
| TAAAACCTAAAGTCGAGAAA+AGG | 0.508413 | 5_4:-7992571 | Msa0834800:CDS |
| TGTTCCTGGTCTGATTCACT+TGG | 0.510038 | 5_4:+7992465 | None:intergenic |
| GAGGTGATGAATAGGAAGAA+GGG | 0.522927 | 5_4:+7992669 | None:intergenic |
| CTTACTTCGATTTCAGGAAG+TGG | 0.529255 | 5_4:+7991532 | None:intergenic |
| GATTTGATTAGATGTGGTAT+GGG | 0.531705 | 5_4:+7993152 | None:intergenic |
| TTTATTTACCTGAGCAACAA+TGG | 0.540344 | 5_4:+7991363 | None:intergenic |
| GAACCTTGAGAAACCAAAGC+TGG | 0.540922 | 5_4:+7992524 | None:intergenic |
| ACAAGTTCAGGCACATAGGT+GGG | 0.548457 | 5_4:+7993087 | None:intergenic |
| ATCATAGATTCTCCCATCAC+AGG | 0.549532 | 5_4:+7990554 | None:intergenic |
| TCTAGGTTTGATAGAAAATG+TGG | 0.554779 | 5_4:-7990246 | Msa0834800:three_prime_UTR |
| AATAATCACAAAACGACAAG+AGG | 0.560394 | 5_4:+7990197 | None:intergenic |
| AACTTCGATTTGATTAGATG+TGG | 0.560569 | 5_4:+7993146 | None:intergenic |
| ATGAAGGAAGGTCCTGTGAT+GGG | 0.560852 | 5_4:-7990566 | Msa0834800:three_prime_UTR |
| ACACAGTGGACGTGCCGCTA+CGG | 0.562208 | 5_4:-7991467 | Msa0834800:CDS |
| AATTCTCTTGCAGAGGAACA+AGG | 0.562972 | 5_4:-7990776 | Msa0834800:intron |
| AACCCTAGAATCCTTATCAA+AGG | 0.573151 | 5_4:+7990598 | None:intergenic |
| CAAGTTCAGGCACATAGGTG+GGG | 0.574321 | 5_4:+7993088 | None:intergenic |
| CTTCTTTAACCAATACCCGA+TGG | 0.574424 | 5_4:-7992831 | Msa0834800:CDS |
| CAGGAAAGAAGGAAGAAAAG+AGG | 0.574687 | 5_4:+7990282 | None:intergenic |
| TTTGCATAGTTGACTTGACT+AGG | 0.577273 | 5_4:-7990398 | Msa0834800:three_prime_UTR |
| TGTTCAAAAGAAATGAATTG+AGG | 0.577900 | 5_4:+7992650 | None:intergenic |
| ACATGTTCTGGGTCGGTGTG+TGG | 0.580330 | 5_4:-7990466 | Msa0834800:three_prime_UTR |
| CATGAAGGAAGGTCCTGTGA+TGG | 0.581540 | 5_4:-7990567 | Msa0834800:three_prime_UTR |
| AACTGGGAAACAATTTGGTG+TGG | 0.582222 | 5_4:+7992748 | None:intergenic |
| TAGGGTTACTATATCCATGA+AGG | 0.583367 | 5_4:-7990582 | Msa0834800:three_prime_UTR |
| TCAAGCTCGAGAACATGTAA+TGG | 0.585662 | 5_4:-7992438 | Msa0834800:CDS |
| TACAAGTTCAGGCACATAGG+TGG | 0.586428 | 5_4:+7993086 | None:intergenic |
| GAGATGCAAGAGAATCCATC+GGG | 0.590902 | 5_4:+7992816 | None:intergenic |
| GCTTACAAGTTCAGGCACAT+AGG | 0.592149 | 5_4:+7993083 | None:intergenic |
| CTCATCTTGATGATCAAACA+AGG | 0.597867 | 5_4:-7992721 | Msa0834800:CDS |
| CATCAAGATGAGTTTCAACT+GGG | 0.598938 | 5_4:+7992732 | None:intergenic |
| TCTCCTGGGAAGCATACGAC+AGG | 0.600421 | 5_4:-7990731 | Msa0834800:CDS |
| GTGACAGCAAAGGATCTCCT+GGG | 0.607386 | 5_4:-7990745 | Msa0834800:CDS |
| AGATCTCTTCACTTGAACTG+TGG | 0.609751 | 5_4:+7991609 | None:intergenic |
| GTTACTATATCCATGAAGGA+AGG | 0.623815 | 5_4:-7990578 | Msa0834800:three_prime_UTR |
| GGAAAACTGTGTGACAGCAA+AGG | 0.624039 | 5_4:-7990755 | Msa0834800:CDS |
| GGAGATGCAAGAGAATCCAT+CGG | 0.627162 | 5_4:+7992815 | None:intergenic |
| AAGTTCAGGCACATAGGTGG+GGG | 0.650925 | 5_4:+7993089 | None:intergenic |
| AATGGCCGAAAGAAAACGAA+GGG | 0.657033 | 5_4:-7992420 | Msa0834800:CDS |
| TAATTGGCCAAGCACCGTAG+CGG | 0.678187 | 5_4:+7991453 | None:intergenic |
| AGCACGTTTGCAGACACTGG+AGG | 0.686426 | 5_4:-7991662 | Msa0834800:intron |
| ATAACCAAGTGAATCAGACC+AGG | 0.687464 | 5_4:-7992469 | Msa0834800:CDS |
| TAATGGCCGAAAGAAAACGA+AGG | 0.695210 | 5_4:-7992421 | Msa0834800:CDS |
| ATTCAATGTGACAAACACAG+TGG | 0.762327 | 5_4:-7991481 | Msa0834800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATAATTTATTTTTCTTT+TGG | - | chr5_4:7991375-7991394 | Msa0834800:CDS | 10.0% |
| !! | AATTAATGTATTCAATATTA+TGG | - | chr5_4:7991791-7991810 | Msa0834800:intron | 10.0% |
| !! | AAAATAAATTAACATTTCTA+AGG | - | chr5_4:7992261-7992280 | Msa0834800:intron | 10.0% |
| !!! | AAAAAATCATAAATTTTAGA+CGG | - | chr5_4:7992506-7992525 | Msa0834800:CDS | 10.0% |
| !!! | TAATTTTTCTAATCATTATT+TGG | - | chr5_4:7993199-7993218 | Msa0834800:intron | 10.0% |
| !!! | AAGTTTATGAATTTTAAGAT+AGG | + | chr5_4:7990498-7990517 | None:intergenic | 15.0% |
| !!! | TTGTTTTTATTTCATTTTCT+AGG | - | chr5_4:7991577-7991596 | Msa0834800:CDS | 15.0% |
| !! | TACAATATAAATATTGCAAT+TGG | + | chr5_4:7991754-7991773 | None:intergenic | 15.0% |
| !! | TATAGGAAAATATTACATAT+AGG | - | chr5_4:7992224-7992243 | Msa0834800:intron | 15.0% |
| !!! | AAATTTTGAAATGAAAAATG+TGG | - | chr5_4:7992529-7992548 | Msa0834800:CDS | 15.0% |
| !! | TTTATGAATTATGATAATCT+AGG | + | chr5_4:7992740-7992759 | None:intergenic | 15.0% |
| !!! | TTATGATTCATTTATTTTCA+AGG | - | chr5_4:7993035-7993054 | Msa0834800:intron | 15.0% |
| !!! | TATGATTCATTTATTTTCAA+GGG | - | chr5_4:7993036-7993055 | Msa0834800:intron | 15.0% |
| !! | TACAATATTAAAAAAAGAAG+TGG | + | chr5_4:7993323-7993342 | None:intergenic | 15.0% |
| !! | AAATAAATTAGAAGAGAAAG+TGG | + | chr5_4:7990193-7990212 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTTCAATCTTCA+AGG | - | chr5_4:7990206-7990225 | Msa0834800:three_prime_UTR | 20.0% |
| !! | AAGCAGATTAAGAATTAAAT+AGG | + | chr5_4:7990235-7990254 | None:intergenic | 20.0% |
| !!! | TTAATCTGCTTTTTCTTTTA+GGG | - | chr5_4:7990244-7990263 | Msa0834800:three_prime_UTR | 20.0% |
| !!! | TCTTTAATTACTTTTGAACA+GGG | - | chr5_4:7990671-7990690 | Msa0834800:three_prime_UTR | 20.0% |
| !! | ACATTAATGATCCATATTAA+AGG | - | chr5_4:7991285-7991304 | Msa0834800:intron | 20.0% |
| !!! | TATTTTCTTATGATCAGATT+AGG | + | chr5_4:7991440-7991459 | None:intergenic | 20.0% |
| !! | CCACAAAAAAAAAAAAAAAG+AGG | + | chr5_4:7992557-7992576 | None:intergenic | 20.0% |
| !!! | CCTCTTTTTTTTTTTTTTTG+TGG | - | chr5_4:7992554-7992573 | Msa0834800:CDS | 20.0% |
| !!! | CTTTTTTTTTTTTTTTGTGG+TGG | - | chr5_4:7992557-7992576 | Msa0834800:CDS | 20.0% |
| !!! | TTTTCTAATCATTATTTGGA+TGG | - | chr5_4:7993203-7993222 | Msa0834800:intron | 20.0% |
| ! | AGAGAGTTAATATTCCAAAT+TGG | + | chr5_4:7990163-7990182 | None:intergenic | 25.0% |
| !!! | CTTAATCTGCTTTTTCTTTT+AGG | - | chr5_4:7990243-7990262 | Msa0834800:three_prime_UTR | 25.0% |
| ! | GTTGAAATCTTAGAATTGAA+GGG | + | chr5_4:7990325-7990344 | None:intergenic | 25.0% |
| ! | AGTTGAAATCTTAGAATTGA+AGG | + | chr5_4:7990326-7990345 | None:intergenic | 25.0% |
| !! | TCTAATCAAATCGAAGTTTT+AGG | - | chr5_4:7990399-7990418 | Msa0834800:three_prime_UTR | 25.0% |
| !!! | CTCTTTAATTACTTTTGAAC+AGG | - | chr5_4:7990670-7990689 | Msa0834800:three_prime_UTR | 25.0% |
| ! | TGTTCAAAAGAAATGAATTG+AGG | + | chr5_4:7990893-7990912 | None:intergenic | 25.0% |
| ! | TAAAATTGCTTAGAAGCAAT+TGG | + | chr5_4:7990929-7990948 | None:intergenic | 25.0% |
| ! | ATTATAACATGTTTGTGAGT+TGG | + | chr5_4:7991216-7991235 | None:intergenic | 25.0% |
| ! | TGATATAGAAATGGTTTGAA+TGG | + | chr5_4:7991245-7991264 | None:intergenic | 25.0% |
| ! | GTAGTATGTTGATATAGAAA+TGG | + | chr5_4:7991254-7991273 | None:intergenic | 25.0% |
| ! | TATTGACGAAAAACATGAAA+TGG | + | chr5_4:7991361-7991380 | None:intergenic | 25.0% |
| !! | TTAGTCTTCGAGAAAAAAAT+AGG | - | chr5_4:7991470-7991489 | Msa0834800:CDS | 25.0% |
| ! | TTGGTAAGTTCAACTTAATT+AGG | + | chr5_4:7991735-7991754 | None:intergenic | 25.0% |
| !! | TGAGATTAAGGTTTTCTAAT+TGG | + | chr5_4:7992106-7992125 | None:intergenic | 25.0% |
| !!! | TAACATTTCTAAGGTTGTTT+AGG | - | chr5_4:7992270-7992289 | Msa0834800:intron | 25.0% |
| ! | GCATACTTGAACATAATAAA+CGG | - | chr5_4:7992422-7992441 | Msa0834800:CDS | 25.0% |
| ! | AAATATTAATTCTCTTGCAG+AGG | - | chr5_4:7992757-7992776 | Msa0834800:CDS | 25.0% |
| ! | GATTAAAATATTCCTTCAAC+TGG | + | chr5_4:7992855-7992874 | None:intergenic | 25.0% |
| ! | ATTAACAATTACACATGTGA+TGG | + | chr5_4:7993183-7993202 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCTTCGAACATGT+TGG | - | chr5_4:7990282-7990301 | Msa0834800:three_prime_UTR | 30.0% |
| GATTTGATTAGATGTGGTAT+GGG | + | chr5_4:7990391-7990410 | None:intergenic | 30.0% | |
| ! | AACTTCGATTTGATTAGATG+TGG | + | chr5_4:7990397-7990416 | None:intergenic | 30.0% |
| !!! | TTGACCAAGCTTTATTTTTC+TGG | - | chr5_4:7990592-7990611 | Msa0834800:three_prime_UTR | 30.0% |
| !! | TTATTTTTCTGGTCGAACTT+TGG | - | chr5_4:7990603-7990622 | Msa0834800:three_prime_UTR | 30.0% |
| !! | AATTACTTTTGAACAGGGAA+TGG | - | chr5_4:7990676-7990695 | Msa0834800:three_prime_UTR | 30.0% |
| CCAAAGTTGTCGAATAATAT+TGG | + | chr5_4:7990749-7990768 | None:intergenic | 30.0% | |
| CCAATATTATTCGACAACTT+TGG | - | chr5_4:7990746-7990765 | Msa0834800:CDS | 30.0% | |
| !!! | TATCGATGTTTTGATCTTCT+TGG | + | chr5_4:7990849-7990868 | None:intergenic | 30.0% |
| AATGAATTGAGGTGATGAAT+AGG | + | chr5_4:7990882-7990901 | None:intergenic | 30.0% | |
| ! | GTTTTACATCGGAATAATCA+AGG | + | chr5_4:7990955-7990974 | None:intergenic | 30.0% |
| TAAAACCTAAAGTCGAGAAA+AGG | - | chr5_4:7990969-7990988 | Msa0834800:intron | 30.0% | |
| ! | GATAAGATCATACCTTTTTG+AGG | + | chr5_4:7991192-7991211 | None:intergenic | 30.0% |
| ATCCATATTAAAGGCTGAAA+TGG | - | chr5_4:7991294-7991313 | Msa0834800:intron | 30.0% | |
| AATGGTCACTAATATTGCTA+GGG | + | chr5_4:7991343-7991362 | None:intergenic | 30.0% | |
| AAATGGTCACTAATATTGCT+AGG | + | chr5_4:7991344-7991363 | None:intergenic | 30.0% | |
| AAGAGTAGACATCAAAAAGT+TGG | - | chr5_4:7991516-7991535 | Msa0834800:CDS | 30.0% | |
| AGAGTAGACATCAAAAAGTT+GGG | - | chr5_4:7991517-7991536 | Msa0834800:CDS | 30.0% | |
| !!! | TCATTTTCTAGGATCAAATC+AGG | - | chr5_4:7991588-7991607 | Msa0834800:CDS | 30.0% |
| AGTAATGTTCTACTTACACT+AGG | - | chr5_4:7991648-7991667 | Msa0834800:CDS | 30.0% | |
| AATATTATGGTATGTGCAGA+TGG | - | chr5_4:7991804-7991823 | Msa0834800:intron | 30.0% | |
| !! | TCAACAATGTTGTTTCCAAA+GGG | + | chr5_4:7992152-7992171 | None:intergenic | 30.0% |
| !! | ATCAACAATGTTGTTTCCAA+AGG | + | chr5_4:7992153-7992172 | None:intergenic | 30.0% |
| TTTATTTACCTGAGCAACAA+TGG | + | chr5_4:7992180-7992199 | None:intergenic | 30.0% | |
| AAAACCAGACAATTATGACA+TGG | - | chr5_4:7992304-7992323 | Msa0834800:intron | 30.0% | |
| ATCCAAAATTAACCAGTTGA+AGG | - | chr5_4:7992840-7992859 | Msa0834800:CDS | 30.0% | |
| ! | TTCCTTCAACTGGTTAATTT+TGG | + | chr5_4:7992845-7992864 | None:intergenic | 30.0% |
| !!! | TCCTTTTTTGTCCTTTGATA+AGG | - | chr5_4:7992931-7992950 | Msa0834800:intron | 30.0% |
| TCCTTATCAAAGGACAAAAA+AGG | + | chr5_4:7992935-7992954 | None:intergenic | 30.0% | |
| ! | TCTTTTCTACAACATGTTCT+GGG | - | chr5_4:7993063-7993082 | Msa0834800:intron | 30.0% |
| ACAACAGAAGAAAAACACTT+TGG | + | chr5_4:7993117-7993136 | None:intergenic | 30.0% | |
| TCTAGGTTTGATAGAAAATG+TGG | - | chr5_4:7993294-7993313 | Msa0834800:intron | 30.0% | |
| AATAATCACAAAACGACAAG+AGG | + | chr5_4:7993346-7993365 | None:intergenic | 30.0% | |
| !!! | TCGAACATGTTGGTTTGTTT+TGG | - | chr5_4:7990292-7990311 | Msa0834800:three_prime_UTR | 35.0% |
| CGATTTGATTAGATGTGGTA+TGG | + | chr5_4:7990392-7990411 | None:intergenic | 35.0% | |
| AGTAGTATGCTTACAAGTTC+AGG | + | chr5_4:7990468-7990487 | None:intergenic | 35.0% | |
| TCGACCAGAAAAATAAAGCT+TGG | + | chr5_4:7990599-7990618 | None:intergenic | 35.0% | |
| GTTTCAACTGGGAAACAATT+TGG | + | chr5_4:7990800-7990819 | None:intergenic | 35.0% | |
| CATCAAGATGAGTTTCAACT+GGG | + | chr5_4:7990811-7990830 | None:intergenic | 35.0% | |
| TCATCAAGATGAGTTTCAAC+TGG | + | chr5_4:7990812-7990831 | None:intergenic | 35.0% | |
| ! | CTCATCTTGATGATCAAACA+AGG | - | chr5_4:7990819-7990838 | Msa0834800:intron | 35.0% |
| !!! | GATGTTTTGATCTTCTTGGT+TGG | + | chr5_4:7990845-7990864 | None:intergenic | 35.0% |
| !! | CTCGACTTTAGGTTTTACAT+CGG | + | chr5_4:7990966-7990985 | None:intergenic | 35.0% |
| ! | TTACACCTTTTCTCGACTTT+AGG | + | chr5_4:7990977-7990996 | None:intergenic | 35.0% |
| ! | CAAAGATTTTCTTCCAGCTT+TGG | - | chr5_4:7991003-7991022 | Msa0834800:intron | 35.0% |
| ! | CTTTTCCCTTCGTTTTCTTT+CGG | + | chr5_4:7991128-7991147 | None:intergenic | 35.0% |
| CACCATTTCAGCCTTTAATA+TGG | + | chr5_4:7991299-7991318 | None:intergenic | 35.0% | |
| GAGTAGACATCAAAAAGTTG+GGG | - | chr5_4:7991518-7991537 | Msa0834800:CDS | 35.0% | |
| GCTGAAGACAACAAAAAAAC+TGG | - | chr5_4:7991906-7991925 | Msa0834800:intron | 35.0% | |
| GATACTCTTACTTCGATTTC+AGG | + | chr5_4:7992017-7992036 | None:intergenic | 35.0% | |
| ATTCAATGTGACAAACACAG+TGG | - | chr5_4:7992059-7992078 | Msa0834800:intron | 35.0% | |
| TACTTTGGACAGTGAGATTA+AGG | + | chr5_4:7992118-7992137 | None:intergenic | 35.0% | |
| TCAGCAACGAAAATTAGTGA+CGG | + | chr5_4:7992657-7992676 | None:intergenic | 35.0% | |
| TGTCCTTTGATAAGGATTCT+AGG | - | chr5_4:7992939-7992958 | Msa0834800:intron | 35.0% | |
| GTCCTTTGATAAGGATTCTA+GGG | - | chr5_4:7992940-7992959 | Msa0834800:intron | 35.0% | |
| AACCCTAGAATCCTTATCAA+AGG | + | chr5_4:7992945-7992964 | None:intergenic | 35.0% | |
| TAGGGTTACTATATCCATGA+AGG | - | chr5_4:7992958-7992977 | Msa0834800:intron | 35.0% | |
| GTTACTATATCCATGAAGGA+AGG | - | chr5_4:7992962-7992981 | Msa0834800:intron | 35.0% | |
| ! | GTCTTTTCTACAACATGTTC+TGG | - | chr5_4:7993062-7993081 | Msa0834800:intron | 35.0% |
| !! | TTTGCATAGTTGACTTGACT+AGG | - | chr5_4:7993142-7993161 | Msa0834800:CDS | 35.0% |
| ! | CTTTTCACAAACAGGAAAGA+AGG | + | chr5_4:7993272-7993291 | None:intergenic | 35.0% |
| CTTCTTTCCTGTTTGTGAAA+AGG | - | chr5_4:7993270-7993289 | Msa0834800:intron | 35.0% | |
| ! | TACTTTTGAACAGGGAATGG+AGG | - | chr5_4:7990679-7990698 | Msa0834800:three_prime_UTR | 40.0% |
| CTTCTTTAACCAATACCCGA+TGG | - | chr5_4:7990709-7990728 | Msa0834800:exon | 40.0% | |
| ! | AACTGGGAAACAATTTGGTG+TGG | + | chr5_4:7990795-7990814 | None:intergenic | 40.0% |
| GAGGTGATGAATAGGAAGAA+GGG | + | chr5_4:7990874-7990893 | None:intergenic | 40.0% | |
| TGAGGTGATGAATAGGAAGA+AGG | + | chr5_4:7990875-7990894 | None:intergenic | 40.0% | |
| !! | AGAAGCAATTGGTGTTGAAC+TGG | + | chr5_4:7990918-7990937 | None:intergenic | 40.0% |
| ATAACCAAGTGAATCAGACC+AGG | - | chr5_4:7991071-7991090 | Msa0834800:intron | 40.0% | |
| TCAAGCTCGAGAACATGTAA+TGG | - | chr5_4:7991102-7991121 | Msa0834800:intron | 40.0% | |
| TAATGGCCGAAAGAAAACGA+AGG | - | chr5_4:7991119-7991138 | Msa0834800:intron | 40.0% | |
| AATGGCCGAAAGAAAACGAA+GGG | - | chr5_4:7991120-7991139 | Msa0834800:intron | 40.0% | |
| TGAAAGAGCGATGAAACTTC+GGG | + | chr5_4:7991155-7991174 | None:intergenic | 40.0% | |
| CTGAAAGAGCGATGAAACTT+CGG | + | chr5_4:7991156-7991175 | None:intergenic | 40.0% | |
| AGATCTCTTCACTTGAACTG+TGG | + | chr5_4:7991934-7991953 | None:intergenic | 40.0% | |
| ! | TTCAGGAAGTGGTTGGTTAT+TGG | + | chr5_4:7992000-7992019 | None:intergenic | 40.0% |
| CTTACTTCGATTTCAGGAAG+TGG | + | chr5_4:7992011-7992030 | None:intergenic | 40.0% | |
| !! | AGGGCAAAAAGGTACTACTT+TGG | + | chr5_4:7992133-7992152 | None:intergenic | 40.0% |
| ! | AGTAGTACCTTTTTGCCCTT+TGG | - | chr5_4:7992134-7992153 | Msa0834800:intron | 40.0% |
| ! | GTTGTTTCCAAAGGGCAAAA+AGG | + | chr5_4:7992144-7992163 | None:intergenic | 40.0% |
| TGATGTAACCATTGTTGCTC+AGG | - | chr5_4:7992169-7992188 | Msa0834800:intron | 40.0% | |
| ACGACCATGTCATAATTGTC+TGG | + | chr5_4:7992311-7992330 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTTGTGGTGGCCG+AGG | - | chr5_4:7992563-7992582 | Msa0834800:CDS | 40.0% |
| TTAGTGAGATGTTCCAACCT+CGG | + | chr5_4:7992583-7992602 | None:intergenic | 40.0% | |
| CAGCAACGAAAATTAGTGAC+GGG | + | chr5_4:7992656-7992675 | None:intergenic | 40.0% | |
| AATTCTCTTGCAGAGGAACA+AGG | - | chr5_4:7992764-7992783 | Msa0834800:CDS | 40.0% | |
| ATCATAGATTCTCCCATCAC+AGG | + | chr5_4:7992989-7993008 | None:intergenic | 40.0% | |
| ! | TTCTACAACATGTTCTGGGT+CGG | - | chr5_4:7993067-7993086 | Msa0834800:intron | 40.0% |
| CAGGAAAGAAGGAAGAAAAG+AGG | + | chr5_4:7993261-7993280 | None:intergenic | 40.0% | |
| ! | CCTAGAACCTTTTCACAAAC+AGG | + | chr5_4:7993280-7993299 | None:intergenic | 40.0% |
| CCTGTTTGTGAAAAGGTTCT+AGG | - | chr5_4:7993277-7993296 | Msa0834800:intron | 40.0% | |
| ACAAGTTCAGGCACATAGGT+GGG | + | chr5_4:7990456-7990475 | None:intergenic | 45.0% | |
| TACAAGTTCAGGCACATAGG+TGG | + | chr5_4:7990457-7990476 | None:intergenic | 45.0% | |
| GCTTACAAGTTCAGGCACAT+AGG | + | chr5_4:7990460-7990479 | None:intergenic | 45.0% | |
| CAAGAGAATCCATCGGGTAT+TGG | + | chr5_4:7990721-7990740 | None:intergenic | 45.0% | |
| GAGATGCAAGAGAATCCATC+GGG | + | chr5_4:7990727-7990746 | None:intergenic | 45.0% | |
| GGAGATGCAAGAGAATCCAT+CGG | + | chr5_4:7990728-7990747 | None:intergenic | 45.0% | |
| ! | CTTCCAGCTTTGGTTTCTCA+AGG | - | chr5_4:7991013-7991032 | Msa0834800:intron | 45.0% |
| GAACCTTGAGAAACCAAAGC+TGG | + | chr5_4:7991019-7991038 | None:intergenic | 45.0% | |
| TGTTCCTGGTCTGATTCACT+TGG | + | chr5_4:7991078-7991097 | None:intergenic | 45.0% | |
| !!! | CTTTTTGAGGCCAGGAACAA+TGG | + | chr5_4:7991179-7991198 | None:intergenic | 45.0% |
| CATTGTTCCTGGCCTCAAAA+AGG | - | chr5_4:7991177-7991196 | Msa0834800:intron | 45.0% | |
| !!! | GATCATACCTTTTTGAGGCC+AGG | + | chr5_4:7991187-7991206 | None:intergenic | 45.0% |
| TGGACAAAGCTTCTGTGTGT+TGG | - | chr5_4:7991824-7991843 | Msa0834800:intron | 45.0% | |
| GGACAAAGCTTCTGTGTGTT+GGG | - | chr5_4:7991825-7991844 | Msa0834800:intron | 45.0% | |
| CTTCGATTTCAGGAAGTGGT+TGG | + | chr5_4:7992007-7992026 | None:intergenic | 45.0% | |
| GGAAAACTGTGTGACAGCAA+AGG | - | chr5_4:7992785-7992804 | Msa0834800:CDS | 45.0% | |
| ATGAAGGAAGGTCCTGTGAT+GGG | - | chr5_4:7992974-7992993 | Msa0834800:intron | 45.0% | |
| !! | TTTAATAATGTATTATATAT+AGG | - | chr5_4:7992207-7992226 | Msa0834800:intron | 5.0% |
| AAGTTCAGGCACATAGGTGG+GGG | + | chr5_4:7990454-7990473 | None:intergenic | 50.0% | |
| CAAGTTCAGGCACATAGGTG+GGG | + | chr5_4:7990455-7990474 | None:intergenic | 50.0% | |
| GCTCTTTCAGCCATTGTTCC+TGG | - | chr5_4:7991166-7991185 | Msa0834800:intron | 50.0% | |
| ACAAGCACGTTTGCAGACAC+TGG | - | chr5_4:7991875-7991894 | Msa0834800:intron | 50.0% | |
| ! | TAATTGGCCAAGCACCGTAG+CGG | + | chr5_4:7992090-7992109 | None:intergenic | 50.0% |
| !!! | TTTTTTGTGGTGGCCGAGGT+TGG | - | chr5_4:7992567-7992586 | Msa0834800:CDS | 50.0% |
| TGTGACAGCAAAGGATCTCC+TGG | - | chr5_4:7992794-7992813 | Msa0834800:CDS | 50.0% | |
| GTGACAGCAAAGGATCTCCT+GGG | - | chr5_4:7992795-7992814 | Msa0834800:CDS | 50.0% | |
| CATCACAGGACCTTCCTTCA+TGG | + | chr5_4:7992975-7992994 | None:intergenic | 50.0% | |
| CATGAAGGAAGGTCCTGTGA+TGG | - | chr5_4:7992973-7992992 | Msa0834800:intron | 50.0% | |
| TCGAGCTTGAGCAGTGTTCC+TGG | + | chr5_4:7991092-7991111 | None:intergenic | 55.0% | |
| AGCACGTTTGCAGACACTGG+AGG | - | chr5_4:7991878-7991897 | Msa0834800:intron | 55.0% | |
| ! | TCTCCTGGGAAGCATACGAC+AGG | - | chr5_4:7992809-7992828 | Msa0834800:CDS | 55.0% |
| AAGCCTGTCGTATGCTTCCC+AGG | + | chr5_4:7992815-7992834 | None:intergenic | 55.0% | |
| ! | ACATGTTCTGGGTCGGTGTG+TGG | - | chr5_4:7993074-7993093 | Msa0834800:intron | 55.0% |
| ! | ACACAGTGGACGTGCCGCTA+CGG | - | chr5_4:7992073-7992092 | Msa0834800:intron | 60.0% |
| ! | GGACGTGCCGCTACGGTGCT+TGG | - | chr5_4:7992080-7992099 | Msa0834800:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7990157 | 7993405 | 7990157 | ID=Msa0834800;Name=Msa0834800 |
| chr5_4 | mRNA | 7990157 | 7993405 | 7990157 | ID=Msa0834800-mRNA-1;Parent=Msa0834800;Name=Msa0834800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=74|0.75|0.8|1|0.75|0.6|5|554|323 |
| chr5_4 | exon | 7990157 | 7990785 | 7990157 | ID=Msa0834800-mRNA-1:exon:3611;Parent=Msa0834800-mRNA-1 |
| chr5_4 | exon | 7991372 | 7991671 | 7991372 | ID=Msa0834800-mRNA-1:exon:3610;Parent=Msa0834800-mRNA-1 |
| chr5_4 | exon | 7992364 | 7992870 | 7992364 | ID=Msa0834800-mRNA-1:exon:3609;Parent=Msa0834800-mRNA-1 |
| chr5_4 | exon | 7993089 | 7993181 | 7993089 | ID=Msa0834800-mRNA-1:exon:3608;Parent=Msa0834800-mRNA-1 |
| chr5_4 | exon | 7993335 | 7993405 | 7993335 | ID=Msa0834800-mRNA-1:exon:3607;Parent=Msa0834800-mRNA-1 |
| chr5_4 | five_prime_UTR | 7993335 | 7993405 | 7993335 | ID=Msa0834800-mRNA-1:five_prime_utr;Parent=Msa0834800-mRNA-1 |
| chr5_4 | five_prime_UTR | 7993179 | 7993181 | 7993179 | ID=Msa0834800-mRNA-1:five_prime_utr;Parent=Msa0834800-mRNA-1 |
| chr5_4 | CDS | 7993089 | 7993178 | 7993089 | ID=Msa0834800-mRNA-1:cds;Parent=Msa0834800-mRNA-1 |
| chr5_4 | CDS | 7992364 | 7992870 | 7992364 | ID=Msa0834800-mRNA-1:cds;Parent=Msa0834800-mRNA-1 |
| chr5_4 | CDS | 7991372 | 7991671 | 7991372 | ID=Msa0834800-mRNA-1:cds;Parent=Msa0834800-mRNA-1 |
| chr5_4 | CDS | 7990711 | 7990785 | 7990711 | ID=Msa0834800-mRNA-1:cds;Parent=Msa0834800-mRNA-1 |
| chr5_4 | three_prime_UTR | 7990157 | 7990710 | 7990157 | ID=Msa0834800-mRNA-1:three_prime_utr;Parent=Msa0834800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
