AlfalfaGEDB | Msa1392850

M. sativa cultivar zhongmu-4 / Msa1392850

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392850	XP_003611502.2	94.207	328	17	1	18	345	1	326	0.0	610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392850	sp\|Q9T072\|BH025_ARATH	35.988	339	186	13	19	341	1	324	4.11e-48	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392850	G7K134	94.207	328	17	1	18	345	1	326	0.0	610

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TFs/TRs:

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Gene ID	Type	Classification
Msa1392850	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0710900	Msa1392850	0.867928	9.532276e-66	-8.615850e-47
Msa0754590	Msa1392850	0.992654	1.321023e-194	-8.615850e-47
Msa0834800	Msa1392850	0.844613	6.782866e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392850	MtrunA17_Chr5g0400671	94.207	328	17	1	18	345	1	326	0.0	610
Msa1392850	MtrunA17_Chr4g0054561	47.175	354	127	15	18	341	1	324	8.53e-82	251
Msa1392850	MtrunA17_Chr4g0054551	44.350	354	137	15	18	341	1	324	5.41e-76	237
Msa1392850	MtrunA17_Chr2g0280161	35.328	351	191	11	19	340	5	348	7.40e-53	178
Msa1392850	MtrunA17_Chr4g0049331	33.851	322	185	10	32	341	1	306	1.68e-49	168
Msa1392850	MtrunA17_Chr5g0400661	39.916	238	122	6	121	342	102	334	4.48e-46	159
Msa1392850	MtrunA17_Chr5g0400621	38.023	263	143	4	80	340	83	327	5.46e-45	157
Msa1392850	MtrunA17_Chr4g0002781	38.168	262	131	7	91	342	109	349	3.07e-44	155
Msa1392850	MtrunA17_Chr2g0333621	36.047	258	139	6	92	342	73	311	1.58e-42	150
Msa1392850	MtrunA17_Chr4g0002801	39.823	226	117	4	133	342	108	330	2.28e-42	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1392850	AT4G37850.2	35.988	339	186	13	19	341	1	324	4.18e-49	167
Msa1392850	AT4G37850.1	35.988	339	186	13	19	341	1	324	4.18e-49	167
Msa1392850	AT2G22760.1	43.784	185	99	2	163	342	111	295	8.85e-46	158
Msa1392850	AT2G22760.2	46.012	163	84	1	163	321	111	273	2.37e-43	151
Msa1392850	AT2G22750.5	33.819	343	153	14	19	323	1	307	3.44e-42	149
Msa1392850	AT2G22750.3	33.819	343	153	14	19	323	5	311	3.54e-42	149
Msa1392850	AT2G22750.4	33.819	343	153	14	19	323	5	311	1.09e-41	148
Msa1392850	AT2G22750.2	45.763	177	69	4	163	323	118	283	1.69e-39	142
Msa1392850	AT2G22750.1	45.763	177	69	4	163	323	118	283	4.07e-39	140
Msa1392850	AT2G22770.1	39.810	211	109	3	149	341	108	318	5.92e-37	135

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Find 91 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAATTAGAAGAGAAAG+TGG	0.442399	tig0021533:+72696	None:intergenic
AACCCTAGAATCCTTATCAA+AGG	0.573151	tig0021533:+69941	None:intergenic
AACTGGGAAACAATTTGGTG+TGG	0.582222	tig0021533:+72096	None:intergenic
AACTTCGATTTGATTAGATG+TGG	0.560569	tig0021533:+72494	None:intergenic
AAGCCTGTCGTATGCTTCCC+AGG	0.497417	tig0021533:+70071	None:intergenic
AAGTTCAGGCACATAGGTGG+GGG	0.650925	tig0021533:+72437	None:intergenic
AATAATCACAAAACGACAAG+AGG	0.560394	tig0021533:+69541	None:intergenic
AATGAGTTGAGGTGATGAAT+AGG	0.399012	tig0021533:+72009	None:intergenic
AATGGCCGAAAGAAAACGAA+GGG	0.657033	tig0021533:-71768	Msa1392850:CDS
AATTCTCTTGCAGAGGAACA+AGG	0.562972	tig0021533:-70119	Msa1392850:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTTGATTAGATGTGGTAT+GGG	+	tig0021533:69733-69752	None:intergenic	30.0%
CCAAAGTTGTCGAATAATAT+TGG	+	tig0021533:70091-70110	None:intergenic	30.0%
CCAATATTATTCGACAACTT+TGG	-	tig0021533:70088-70107	Msa1392850:CDS	30.0%
TGTTCAAAAGAAATGAGTTG+AGG	+	tig0021533:70235-70254	None:intergenic	30.0%
TAAAACCTAAAGTCGAGAAA+AGG	-	tig0021533:70311-70330	Msa1392850:intron	30.0%
ATCCATATTAAAGGCTGAAA+TGG	-	tig0021533:70636-70655	Msa1392850:intron	30.0%
AATGGTCACTAATATTGCTA+GGG	+	tig0021533:70685-70704	None:intergenic	30.0%
AAATGGTCACTAATATTGCT+AGG	+	tig0021533:70686-70705	None:intergenic	30.0%
AAGAGTAGACATCAAAAAGT+TGG	-	tig0021533:70862-70881	Msa1392850:CDS	30.0%
AGAGTAGACATCAAAAAGTT+GGG	-	tig0021533:70863-70882	Msa1392850:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021533	gene	69501	72751	69501	ID=Msa1392850;Name=Msa1392850
tig0021533	mRNA	69501	72751	69501	ID=Msa1392850-mRNA-1;Parent=Msa1392850;Name=Msa1392850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=74\|1\|1\|1\|0.75\|0.6\|5\|553\|345
tig0021533	exon	69501	70128	69501	ID=Msa1392850-mRNA-1:exon:13485;Parent=Msa1392850-mRNA-1
tig0021533	exon	70718	71083	70718	ID=Msa1392850-mRNA-1:exon:13484;Parent=Msa1392850-mRNA-1
tig0021533	exon	71712	72218	71712	ID=Msa1392850-mRNA-1:exon:13483;Parent=Msa1392850-mRNA-1
tig0021533	exon	72437	72529	72437	ID=Msa1392850-mRNA-1:exon:13482;Parent=Msa1392850-mRNA-1
tig0021533	exon	72681	72751	72681	ID=Msa1392850-mRNA-1:exon:13481;Parent=Msa1392850-mRNA-1
tig0021533	five_prime_UTR	72681	72751	72681	ID=Msa1392850-mRNA-1:five_prime_utr;Parent=Msa1392850-mRNA-1
tig0021533	five_prime_UTR	72527	72529	72527	ID=Msa1392850-mRNA-1:five_prime_utr;Parent=Msa1392850-mRNA-1
tig0021533	CDS	72437	72526	72437	ID=Msa1392850-mRNA-1:cds;Parent=Msa1392850-mRNA-1
tig0021533	CDS	71712	72218	71712	ID=Msa1392850-mRNA-1:cds;Parent=Msa1392850-mRNA-1
tig0021533	CDS	70718	71083	70718	ID=Msa1392850-mRNA-1:cds;Parent=Msa1392850-mRNA-1
tig0021533	CDS	70054	70128	70054	ID=Msa1392850-mRNA-1:cds;Parent=Msa1392850-mRNA-1
tig0021533	three_prime_UTR	69501	70053	69501	ID=Msa1392850-mRNA-1:three_prime_utr;Parent=Msa1392850-mRNA-1

Gene Sequence

>Msa1392850

ATGTCCCATACCACATCTAATCAAATCGAAGTTTTAGGAAAGAAACTGAAGATGATGCAAATTATGTCCCCCACCTATGTGCCTGAACTTGGAATGGAGGATCTCAACTTCTTTAACCAATACCCGATGGATTCTCTTGCATCTCCAATATTATTCGACAACTTTGGCTTTCACTTTGATGACAACGAAACCACACCAAATTGTTTCCCAGTTGAAACTCATCTTGATGATCAAACAAGGCCAACCAAGAAGATCAAGACATCGATAAACCCTTCTTCCTATTCATCACCTCAACTCATTTCTTTTGAACACTCCAGTTCAACACCAATTGCTTCTAAGAAATTTTATAACCTTGATTATTCCGATGTAAAACCTAAAGTCGAGAAAAGGTGTAATGATAACAAAGATTTTCTTCCAGCTTTGGTTTCTCAAGGTTCTTATGAAGATCAAAAAATATTTTCAAATTATGATAACCAAGTGAATCAGACCAGGAACACTGCTCAAGCTCGAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTTACCCGAAGTTTCATCGCTCTTTCAGCCATTGTTCCTGGCCTCAAAAAGATGGACAAAGCTTCTGTGTTGGGAGATGCTATCAAGTACATGAAACAACTACAAGCACGTTTGCAGACACTGGAGGAACAAGCTGAAGACAACAAAAAAACTGGATCCACAGTTCAAGTGAAGAGATCTATTATCTTCACTAATGATGACGATGATGATGATGATAGCAACTCCAATAACCAACCACTTCCTGAAATCGAAGTAAGAGTATCAAGCAAAGATGTACTCATCAAGATTCAATGTGACAAACACAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCACTGTCCAAAGTAGTACCTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACCATTGTTGCTAAGAGGAACAAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATACGACAGGCTTTAATCATCCAAAATTAA

Protein sequence

>Msa1392850

MSHTTSNQIEVLGKKLKMMQIMSPTYVPELGMEDLNFFNQYPMDSLASPILFDNFGFHFDDNETTPNCFPVETHLDDQTRPTKKIKTSINPSSYSSPQLISFEHSSSTPIASKKFYNLDYSDVKPKVEKRCNDNKDFLPALVSQGSYEDQKIFSNYDNQVNQTRNTAQAREHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLQARLQTLEEQAEDNKKTGSTVQVKRSIIFTNDDDDDDDSNSNNQPLPEIEVRVSSKDVLIKIQCDKHSGRAATVLGQLENLNLTVQSSTFLPFGNNIVDVTIVAKRNKENCVTAKDLLGSIRQALIIQN*