Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836990 | XP_003611849.1 | 94.565 | 184 | 10 | 0 | 1 | 184 | 1 | 184 | 2.20e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836990 | G7K9G4 | 94.565 | 184 | 10 | 0 | 1 | 184 | 1 | 184 | 1.05e-119 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0836990 | Msa1181250 | 0.810216 | 1.287311e-50 | -8.615850e-47 |
| Msa0836990 | Msa1181330 | 0.811620 | 6.390519e-51 | -8.615850e-47 |
| Msa0434180 | Msa0836990 | 0.801268 | 9.755417e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836990 | MtrunA17_Chr5g0403031 | 94.565 | 184 | 10 | 0 | 1 | 184 | 1 | 184 | 2.02e-123 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836990 | AT4G37090.1 | 44.865 | 185 | 90 | 4 | 1 | 180 | 1 | 178 | 3.25e-32 | 114 |
| Msa0836990 | AT4G37090.2 | 44.865 | 185 | 88 | 5 | 1 | 180 | 1 | 176 | 1.43e-25 | 97.4 |
Find 44 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATCGATTCAGAAAATTT+AGG | 0.187077 | 5_4:+10704952 | None:intergenic |
| AGAAAGAACGTCGGCGAAAA+TGG | 0.201521 | 5_4:-10703500 | Msa0836990:CDS |
| AAGCATTTCAACGATGCTTT+TGG | 0.257390 | 5_4:+10703350 | None:intergenic |
| AAGAGAAAATCCAAGGATTC+AGG | 0.267478 | 5_4:-10703167 | Msa0836990:CDS |
| TAATCGATTCAGAAAATTTA+GGG | 0.281735 | 5_4:+10704953 | None:intergenic |
| TACGTCTACTTTCCAGTTCC+GGG | 0.304004 | 5_4:-10702915 | Msa0836990:CDS |
| TTACGTCTACTTTCCAGTTC+CGG | 0.332647 | 5_4:-10702916 | Msa0836990:CDS |
| TGAGGAGGAAGATAAATTAA+AGG | 0.338322 | 5_4:-10703204 | Msa0836990:CDS |
| CCTTTCTTTCAAGAAATCTA+AGG | 0.339473 | 5_4:+10702990 | None:intergenic |
| AGAGATTCGAAAGATTAAAA+AGG | 0.343332 | 5_4:-10704696 | Msa0836990:CDS |
| GCTGGTTTGCTCACAACAAT+AGG | 0.365361 | 5_4:+10703036 | None:intergenic |
| CCTTAGATTTCTTGAAAGAA+AGG | 0.371410 | 5_4:-10702990 | Msa0836990:CDS |
| CCCTACTAACCCTGAATCCT+TGG | 0.376700 | 5_4:+10703157 | None:intergenic |
| TTCAAAACAGCAGACGATCT+TGG | 0.392274 | 5_4:+10702955 | None:intergenic |
| AGAAATCCCACAGCGGTGTT+TGG | 0.400853 | 5_4:+10703375 | None:intergenic |
| GAAAGAACGTCGGCGAAAAT+GGG | 0.410361 | 5_4:-10703499 | Msa0836990:CDS |
| TGTTCAGCTGTGAATTCCTC+AGG | 0.416780 | 5_4:+10704868 | None:intergenic |
| TATTATGGGACAGGATATAT+AGG | 0.417506 | 5_4:-10701927 | Msa0836990:intron |
| CGTTGAAATGCTTGCAGCTA+AGG | 0.422595 | 5_4:-10703340 | Msa0836990:CDS |
| TGAGGAATTCACAGCTGAAC+AGG | 0.425645 | 5_4:-10704866 | Msa0836990:intron |
| AATTAAAGGCTGCCACTTCA+AGG | 0.429482 | 5_4:-10703190 | Msa0836990:CDS |
| AGTGGTTTCACTCTCAGCTC+AGG | 0.432449 | 5_4:-10701904 | Msa0836990:three_prime_UTR |
| CTGGCGTATGATCCCGGAAC+TGG | 0.452601 | 5_4:+10702903 | None:intergenic |
| TTTAAGCATTGAGGAGGAGC+TGG | 0.495755 | 5_4:+10703018 | None:intergenic |
| AGAGAAAATCCAAGGATTCA+GGG | 0.497993 | 5_4:-10703166 | Msa0836990:intron |
| TCATTTCTGGCGTATGATCC+CGG | 0.513063 | 5_4:+10702897 | None:intergenic |
| TTAGTAGCTTTGGATGGTCG+AGG | 0.518576 | 5_4:+10703462 | None:intergenic |
| ATCAGAATCGTTGTCTGACA+TGG | 0.553832 | 5_4:+10704894 | None:intergenic |
| AAGGCAGTCTTTAAGCATTG+AGG | 0.559734 | 5_4:+10703009 | None:intergenic |
| AAGTAGACGTAATGCTTGGT+TGG | 0.572908 | 5_4:+10702927 | None:intergenic |
| TGGAAAGTAGACGTAATGCT+TGG | 0.583915 | 5_4:+10702923 | None:intergenic |
| GGGATCATACGCCAGAAATG+AGG | 0.587190 | 5_4:-10702895 | Msa0836990:exon |
| GTTCAGCTGTGAATTCCTCA+GGG | 0.589265 | 5_4:+10704869 | None:intergenic |
| TTCAAGGAAGAGAAAATCCA+AGG | 0.598658 | 5_4:-10703174 | Msa0836990:CDS |
| TTTATTAACTGAGACTGATG+AGG | 0.602529 | 5_4:-10703222 | Msa0836990:CDS |
| GCAGTCTTTAAGCATTGAGG+AGG | 0.607524 | 5_4:+10703012 | None:intergenic |
| ATTAACTGAGACTGATGAGG+AGG | 0.608820 | 5_4:-10703219 | Msa0836990:CDS |
| AAAACAACAGGCATTTGCAA+AGG | 0.613402 | 5_4:+10701874 | None:intergenic |
| GTGGTTTCACTCTCAGCTCA+GGG | 0.615416 | 5_4:-10701903 | Msa0836990:three_prime_UTR |
| TTCAGCTGTGAATTCCTCAG+GGG | 0.664205 | 5_4:+10704870 | None:intergenic |
| TGGGACAGGATATATAGGAG+TGG | 0.671366 | 5_4:-10701922 | Msa0836990:intron |
| CAACGATTCTGATGCCCCTG+AGG | 0.672395 | 5_4:-10704884 | Msa0836990:CDS |
| ATATTGAAGAGAAAGAACGT+CGG | 0.783151 | 5_4:-10703509 | Msa0836990:CDS |
| TTTGGGAAGAAATCCCACAG+CGG | 0.817262 | 5_4:+10703368 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTTTCATAAATTATTAT+GGG | - | chr5_4:10703077-10703096 | Msa0836990:intron | 10.0% |
| !! | AACAATAAATAACTTAATAA+TGG | + | chr5_4:10704265-10704284 | None:intergenic | 10.0% |
| !! | CTAAATTATTAAACTATAAA+AGG | + | chr5_4:10704838-10704857 | None:intergenic | 10.0% |
| !! | ATTCATTGAAACAAATAAAT+TGG | + | chr5_4:10701995-10702014 | None:intergenic | 15.0% |
| !!! | TTTAATTTGTTTTGTTTTTG+AGG | - | chr5_4:10702033-10702052 | Msa0836990:intron | 15.0% |
| !!! | TTTTCAATCTTATTTTTGTT+GGG | - | chr5_4:10702282-10702301 | Msa0836990:intron | 15.0% |
| !!! | TTTTAACATTGATAGATTAT+TGG | - | chr5_4:10702582-10702601 | Msa0836990:intron | 15.0% |
| !!! | AAGAATTTTGATAAAAGTTT+TGG | - | chr5_4:10702752-10702771 | Msa0836990:intron | 15.0% |
| !!! | TATTTAAATTTTAACAACAC+TGG | - | chr5_4:10702986-10703005 | Msa0836990:CDS | 15.0% |
| !!! | GTTAGTTTCATAAATTATTA+TGG | - | chr5_4:10703076-10703095 | Msa0836990:intron | 15.0% |
| !! | ATTATTAAACTATAAAAGGT+TGG | + | chr5_4:10704834-10704853 | None:intergenic | 15.0% |
| !! | ATAATTTAGTTATAAATGTG+AGG | - | chr5_4:10704849-10704868 | Msa0836990:intron | 15.0% |
| !!! | TAATCGATTCAGAAAATTTA+GGG | + | chr5_4:10701862-10701881 | None:intergenic | 20.0% |
| !! | TGAAACAAATAAATTGGAAT+TGG | + | chr5_4:10701989-10702008 | None:intergenic | 20.0% |
| !! | TTAAAAAGGAAAACAAAATC+AGG | - | chr5_4:10702130-10702149 | Msa0836990:intron | 20.0% |
| !!! | ATGAGGTTAATTTAAGTTAT+TGG | - | chr5_4:10702174-10702193 | Msa0836990:intron | 20.0% |
| !!! | GTTTTCAATCTTATTTTTGT+TGG | - | chr5_4:10702281-10702300 | Msa0836990:intron | 20.0% |
| !!! | TTTCAATCTTATTTTTGTTG+GGG | - | chr5_4:10702283-10702302 | Msa0836990:intron | 20.0% |
| !! | ATAGATTATTGGATAATCTT+GGG | - | chr5_4:10702593-10702612 | Msa0836990:intron | 20.0% |
| !!! | TCATTTTGCTGATTATTAAT+TGG | - | chr5_4:10702702-10702721 | Msa0836990:intron | 20.0% |
| !! | AATTTAAATAACAGCTATAG+TGG | + | chr5_4:10702976-10702995 | None:intergenic | 20.0% |
| !!! | CTTTAGATAAATCTTTTAAG+AGG | - | chr5_4:10703544-10703563 | Msa0836990:intron | 20.0% |
| !! | AAGGAAATATATATAACTAC+AGG | + | chr5_4:10703737-10703756 | None:intergenic | 20.0% |
| !! | ATAATTAACTTCAACTAACA+TGG | + | chr5_4:10704077-10704096 | None:intergenic | 20.0% |
| !!! | TTCAAATTATTTGTCGTTTA+AGG | + | chr5_4:10704305-10704324 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAGAAAGAAAAA+TGG | + | chr5_4:10704748-10704767 | None:intergenic | 20.0% |
| !! | GTAATCGATTCAGAAAATTT+AGG | + | chr5_4:10701863-10701882 | None:intergenic | 25.0% |
| ! | AGAGATTCGAAAGATTAAAA+AGG | - | chr5_4:10702116-10702135 | Msa0836990:intron | 25.0% |
| ! | TTTGTGTTTACTTAGTTATG+AGG | - | chr5_4:10702157-10702176 | Msa0836990:intron | 25.0% |
| ! | GATAGATTATTGGATAATCT+TGG | - | chr5_4:10702592-10702611 | Msa0836990:intron | 25.0% |
| !! | TTTGCTGATTATTAATTGGT+TGG | - | chr5_4:10702706-10702725 | Msa0836990:intron | 25.0% |
| ! | ATTATTAATTGGTTGGCATT+AGG | - | chr5_4:10702713-10702732 | Msa0836990:intron | 25.0% |
| !! | TTGATGAAAAACCTTTTCAT+AGG | + | chr5_4:10703014-10703033 | None:intergenic | 25.0% |
| ! | TCTCTTATACTGCATAATTA+TGG | - | chr5_4:10703183-10703202 | Msa0836990:CDS | 25.0% |
| ! | CTCTTATACTGCATAATTAT+GGG | - | chr5_4:10703184-10703203 | Msa0836990:CDS | 25.0% |
| ! | ATATTAGACATCACTATATG+TGG | + | chr5_4:10703263-10703282 | None:intergenic | 25.0% |
| ! | ATGTCTAATATGACTTTACA+TGG | - | chr5_4:10703272-10703291 | Msa0836990:intron | 25.0% |
| ! | CAAAGCTACTAAAAAATCTA+GGG | - | chr5_4:10703361-10703380 | Msa0836990:CDS | 25.0% |
| !!! | TTTATAGATTTTTTTGGCCA+AGG | - | chr5_4:10703959-10703978 | Msa0836990:intron | 25.0% |
| ! | GAATGATAACACTGATAAAA+GGG | - | chr5_4:10704158-10704177 | Msa0836990:intron | 25.0% |
| ! | AATGATAACACTGATAAAAG+GGG | - | chr5_4:10704159-10704178 | Msa0836990:intron | 25.0% |
| !! | TTGTAAGCAATATTTTGTGA+TGG | - | chr5_4:10704325-10704344 | Msa0836990:intron | 25.0% |
| ! | AAGAAAAAACATCATCTTGT+TGG | - | chr5_4:10704463-10704482 | Msa0836990:intron | 25.0% |
| !!! | AAACACTTTTGATTCTGTTT+AGG | - | chr5_4:10704535-10704554 | Msa0836990:intron | 25.0% |
| !!! | AACACTTTTGATTCTGTTTA+GGG | - | chr5_4:10704536-10704555 | Msa0836990:intron | 25.0% |
| !! | TGTTTTTGCAATGAGTAACT+AGG | - | chr5_4:10702225-10702244 | Msa0836990:intron | 30.0% |
| ! | GTTTTTGCAATGAGTAACTA+GGG | - | chr5_4:10702226-10702245 | Msa0836990:intron | 30.0% |
| GATATTGATCAATCTTGATG+TGG | - | chr5_4:10702350-10702369 | Msa0836990:intron | 30.0% | |
| ATATTGCAGTTATAGCATAG+CGG | - | chr5_4:10702396-10702415 | Msa0836990:intron | 30.0% | |
| ! | ATTTTGTACTGAATAGTGTG+TGG | + | chr5_4:10702448-10702467 | None:intergenic | 30.0% |
| TGCAGTATAAGAGAGAATAA+AGG | + | chr5_4:10703177-10703196 | None:intergenic | 30.0% | |
| CATGAGTTCAAAATAAAGCA+AGG | + | chr5_4:10703232-10703251 | None:intergenic | 30.0% | |
| TAATATGACTTTACATGGCA+GGG | - | chr5_4:10703277-10703296 | Msa0836990:intron | 30.0% | |
| ATATTGAAGAGAAAGAACGT+CGG | - | chr5_4:10703303-10703322 | Msa0836990:intron | 30.0% | |
| !!! | GATTTTTTAGTAGCTTTGGA+TGG | + | chr5_4:10703359-10703378 | None:intergenic | 30.0% |
| !!! | CCTAGATTTTTTAGTAGCTT+TGG | + | chr5_4:10703363-10703382 | None:intergenic | 30.0% |
| CCAAAGCTACTAAAAAATCT+AGG | - | chr5_4:10703360-10703379 | Msa0836990:CDS | 30.0% | |
| TTTATTAACTGAGACTGATG+AGG | - | chr5_4:10703590-10703609 | Msa0836990:intron | 30.0% | |
| TGAGGAGGAAGATAAATTAA+AGG | - | chr5_4:10703608-10703627 | Msa0836990:intron | 30.0% | |
| CCTTTCTTTCAAGAAATCTA+AGG | + | chr5_4:10703825-10703844 | None:intergenic | 30.0% | |
| CCTTAGATTTCTTGAAAGAA+AGG | - | chr5_4:10703822-10703841 | Msa0836990:intron | 30.0% | |
| GGAATAAAAATCCTCATTTC+TGG | + | chr5_4:10703931-10703950 | None:intergenic | 30.0% | |
| GGAATGATAACACTGATAAA+AGG | - | chr5_4:10704157-10704176 | Msa0836990:intron | 30.0% | |
| ATGATAACACTGATAAAAGG+GGG | - | chr5_4:10704160-10704179 | Msa0836990:intron | 30.0% | |
| AAGAAGAAGCTATAGTAACA+TGG | - | chr5_4:10704205-10704224 | Msa0836990:intron | 30.0% | |
| !! | AGTGTTTTTGAGAGTTTTCA+GGG | + | chr5_4:10704522-10704541 | None:intergenic | 30.0% |
| !! | AAGTGTTTTTGAGAGTTTTC+AGG | + | chr5_4:10704523-10704542 | None:intergenic | 30.0% |
| !!! | GCCAGTTGTTTTTCTATTAT+GGG | - | chr5_4:10704871-10704890 | Msa0836990:CDS | 30.0% |
| TCCCATAATAGAAAAACAAC+TGG | + | chr5_4:10704875-10704894 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTATTATGGGAC+AGG | - | chr5_4:10704876-10704895 | Msa0836990:CDS | 30.0% |
| TATTATGGGACAGGATATAT+AGG | - | chr5_4:10704885-10704904 | Msa0836990:CDS | 30.0% | |
| !!! | CTGTTGTTTTTCTCAAACAA+GGG | - | chr5_4:10704951-10704970 | Msa0836990:five_prime_UTR | 30.0% |
| ! | AATCTAAGAGTGTGTATTGC+AGG | - | chr5_4:10702077-10702096 | Msa0836990:intron | 35.0% |
| ! | ATCTAAGAGTGTGTATTGCA+GGG | - | chr5_4:10702078-10702097 | Msa0836990:intron | 35.0% |
| ! | AGTTATAGCATAGCGGAATT+TGG | - | chr5_4:10702403-10702422 | Msa0836990:intron | 35.0% |
| ! | ACTATAGCACTTTTGCATAG+TGG | - | chr5_4:10702493-10702512 | Msa0836990:intron | 35.0% |
| ATCGACAACATTAGTTACGT+TGG | - | chr5_4:10702550-10702569 | Msa0836990:intron | 35.0% | |
| GATAATCTTGGGTTTGAGTA+GGG | - | chr5_4:10702604-10702623 | Msa0836990:intron | 35.0% | |
| TATCGCAAAAAATAGTGCTC+TGG | - | chr5_4:10702830-10702849 | Msa0836990:intron | 35.0% | |
| CTAATATGACTTTACATGGC+AGG | - | chr5_4:10703276-10703295 | Msa0836990:intron | 35.0% | |
| ! | TTTTGCTGAGATTCAGTGTT+TGG | + | chr5_4:10703416-10703435 | None:intergenic | 35.0% |
| ! | AGCATTTCAACGATGCTTTT+GGG | + | chr5_4:10703464-10703483 | None:intergenic | 35.0% |
| ! | AAGCATTTCAACGATGCTTT+TGG | + | chr5_4:10703465-10703484 | None:intergenic | 35.0% |
| AGCTAAGGAGAAGTAATGAT+TGG | - | chr5_4:10703487-10703506 | Msa0836990:CDS | 35.0% | |
| TTCAAGGAAGAGAAAATCCA+AGG | - | chr5_4:10703638-10703657 | Msa0836990:intron | 35.0% | |
| AAGAGAAAATCCAAGGATTC+AGG | - | chr5_4:10703645-10703664 | Msa0836990:intron | 35.0% | |
| AGAGAAAATCCAAGGATTCA+GGG | - | chr5_4:10703646-10703665 | Msa0836990:intron | 35.0% | |
| TTCAGAACTGCAAATCACAA+AGG | + | chr5_4:10703756-10703775 | None:intergenic | 35.0% | |
| !! | TCTGAAAGTATTTCAGGGTT+TGG | + | chr5_4:10704133-10704152 | None:intergenic | 35.0% |
| !! | CCTTCTCTGAAAGTATTTCA+GGG | + | chr5_4:10704138-10704157 | None:intergenic | 35.0% |
| CCTGAAATACTTTCAGAGAA+GGG | - | chr5_4:10704136-10704155 | Msa0836990:intron | 35.0% | |
| CAATTTATGTGCCATGTATC+AGG | + | chr5_4:10704355-10704374 | None:intergenic | 35.0% | |
| CTGATACATGGCACATAAAT+TGG | - | chr5_4:10704353-10704372 | Msa0836990:intron | 35.0% | |
| !! | CCTATTGACTTGTTGCTAAA+TGG | + | chr5_4:10704396-10704415 | None:intergenic | 35.0% |
| CCATTTAGCAACAAGTCAAT+AGG | - | chr5_4:10704393-10704412 | Msa0836990:intron | 35.0% | |
| TGCTCATATCTGAAAACTAG+TGG | - | chr5_4:10704421-10704440 | Msa0836990:intron | 35.0% | |
| ! | TAGTGGCTTGCATATGTTTA+AGG | - | chr5_4:10704438-10704457 | Msa0836990:intron | 35.0% |
| ACGACAAAGACGATTTCAAA+TGG | - | chr5_4:10704622-10704641 | Msa0836990:intron | 35.0% | |
| !! | TAGAGTGTTGAAAATTGCTG+AGG | - | chr5_4:10704775-10704794 | Msa0836990:intron | 35.0% |
| TTGAAAATTGCTGAGGCTAA+TGG | - | chr5_4:10704782-10704801 | Msa0836990:intron | 35.0% | |
| !!! | GGCCAGTTGTTTTTCTATTA+TGG | - | chr5_4:10704870-10704889 | Msa0836990:CDS | 35.0% |
| AAAACAACAGGCATTTGCAA+AGG | + | chr5_4:10704941-10704960 | None:intergenic | 35.0% | |
| ! | CCTTGTTTGAGAAAAACAAC+AGG | + | chr5_4:10704953-10704972 | None:intergenic | 35.0% |
| !!! | CCTGTTGTTTTTCTCAAACA+AGG | - | chr5_4:10704950-10704969 | Msa0836990:five_prime_UTR | 35.0% |
| ATCAGAATCGTTGTCTGACA+TGG | + | chr5_4:10701921-10701940 | None:intergenic | 40.0% | |
| ATGTTGTCGATCGCAAACAA+CGG | + | chr5_4:10702541-10702560 | None:intergenic | 40.0% | |
| GGATAATCTTGGGTTTGAGT+AGG | - | chr5_4:10702603-10702622 | Msa0836990:intron | 40.0% | |
| AAATAACAGCTATAGTGGCG+CGG | + | chr5_4:10702971-10702990 | None:intergenic | 40.0% | |
| CAACACTGGAACCTATGAAA+AGG | - | chr5_4:10703000-10703019 | Msa0836990:CDS | 40.0% | |
| TGAGAGATAGTGCTTATCTC+AGG | - | chr5_4:10703048-10703067 | Msa0836990:intron | 40.0% | |
| ATTAACTGAGACTGATGAGG+AGG | - | chr5_4:10703593-10703612 | Msa0836990:intron | 40.0% | |
| ! | AATTAAAGGCTGCCACTTCA+AGG | - | chr5_4:10703622-10703641 | Msa0836990:intron | 40.0% |
| ! | GGATTTTCTCTTCCTTGAAG+TGG | + | chr5_4:10703637-10703656 | None:intergenic | 40.0% |
| ! | AAGGCAGTCTTTAAGCATTG+AGG | + | chr5_4:10703806-10703825 | None:intergenic | 40.0% |
| TTCAAAACAGCAGACGATCT+TGG | + | chr5_4:10703860-10703879 | None:intergenic | 40.0% | |
| AAGTAGACGTAATGCTTGGT+TGG | + | chr5_4:10703888-10703907 | None:intergenic | 40.0% | |
| TGGAAAGTAGACGTAATGCT+TGG | + | chr5_4:10703892-10703911 | None:intergenic | 40.0% | |
| TTACGTCTACTTTCCAGTTC+CGG | - | chr5_4:10703896-10703915 | Msa0836990:intron | 40.0% | |
| !!! | AGATTTTTTTGGCCAAGGTG+AGG | - | chr5_4:10703964-10703983 | Msa0836990:intron | 40.0% |
| AGTATTTCAGGGTTTGGAGA+GGG | + | chr5_4:10704127-10704146 | None:intergenic | 40.0% | |
| AAGTATTTCAGGGTTTGGAG+AGG | + | chr5_4:10704128-10704147 | None:intergenic | 40.0% | |
| CCCTGAAATACTTTCAGAGA+AGG | - | chr5_4:10704135-10704154 | Msa0836990:intron | 40.0% | |
| !! | CCCTTCTCTGAAAGTATTTC+AGG | + | chr5_4:10704139-10704158 | None:intergenic | 40.0% |
| TAACACTGATAAAAGGGGGA+CGG | - | chr5_4:10704164-10704183 | Msa0836990:intron | 40.0% | |
| TTCTGTTTAGGGACTTCTGA+TGG | - | chr5_4:10704547-10704566 | Msa0836990:intron | 40.0% | |
| TTCAGCTGTGAATTCCTCAG+GGG | + | chr5_4:10701945-10701964 | None:intergenic | 45.0% | |
| GTTCAGCTGTGAATTCCTCA+GGG | + | chr5_4:10701946-10701965 | None:intergenic | 45.0% | |
| TGTTCAGCTGTGAATTCCTC+AGG | + | chr5_4:10701947-10701966 | None:intergenic | 45.0% | |
| TGAGGAATTCACAGCTGAAC+AGG | - | chr5_4:10701946-10701965 | Msa0836990:intron | 45.0% | |
| GGTTGGCATTAGGTGCTTAA+TGG | - | chr5_4:10702723-10702742 | Msa0836990:intron | 45.0% | |
| ! | ATTATGGGCTAACCGCTGAA+TGG | - | chr5_4:10703092-10703111 | Msa0836990:intron | 45.0% |
| AGATGGGTGTAGCTAGCATA+TGG | - | chr5_4:10703118-10703137 | Msa0836990:intron | 45.0% | |
| AGAAAGAACGTCGGCGAAAA+TGG | - | chr5_4:10703312-10703331 | Msa0836990:intron | 45.0% | |
| GAAAGAACGTCGGCGAAAAT+GGG | - | chr5_4:10703313-10703332 | Msa0836990:intron | 45.0% | |
| !! | TTAGTAGCTTTGGATGGTCG+AGG | + | chr5_4:10703353-10703372 | None:intergenic | 45.0% |
| CAAAAACCAAACACCGCTGT+GGG | - | chr5_4:10703431-10703450 | Msa0836990:CDS | 45.0% | |
| TTTGGGAAGAAATCCCACAG+CGG | + | chr5_4:10703447-10703466 | None:intergenic | 45.0% | |
| CGTTGAAATGCTTGCAGCTA+AGG | - | chr5_4:10703472-10703491 | Msa0836990:CDS | 45.0% | |
| ! | TCCAAGGATTCAGGGTTAGT+AGG | - | chr5_4:10703654-10703673 | Msa0836990:intron | 45.0% |
| ! | CCAAGGATTCAGGGTTAGTA+GGG | - | chr5_4:10703655-10703674 | Msa0836990:intron | 45.0% |
| !! | GCTGGTTTGCTCACAACAAT+AGG | + | chr5_4:10703779-10703798 | None:intergenic | 45.0% |
| !! | TTTAAGCATTGAGGAGGAGC+TGG | + | chr5_4:10703797-10703816 | None:intergenic | 45.0% |
| !! | GCAGTCTTTAAGCATTGAGG+AGG | + | chr5_4:10703803-10703822 | None:intergenic | 45.0% |
| TACGTCTACTTTCCAGTTCC+GGG | - | chr5_4:10703897-10703916 | Msa0836990:intron | 45.0% | |
| !! | TCATTTCTGGCGTATGATCC+CGG | + | chr5_4:10703918-10703937 | None:intergenic | 45.0% |
| ! | ATCGTCTTTGCTGCTTCTGT+CGG | - | chr5_4:10704017-10704036 | Msa0836990:intron | 45.0% |
| TTTGGAGAGGGAGTTCTATG+TGG | + | chr5_4:10704115-10704134 | None:intergenic | 45.0% | |
| AACACTGATAAAAGGGGGAC+GGG | - | chr5_4:10704165-10704184 | Msa0836990:intron | 45.0% | |
| GTGATGGTCAACCTGATACA+TGG | - | chr5_4:10704341-10704360 | Msa0836990:intron | 45.0% | |
| TTGGAGCCACTTCTGTTCTT+GGG | - | chr5_4:10704482-10704501 | Msa0836990:intron | 45.0% | |
| GAGGACTACTTCTTTGTCCA+GGG | - | chr5_4:10704581-10704600 | Msa0836990:intron | 45.0% | |
| TTTGTCCAGGGTTTGTGATG+AGG | - | chr5_4:10704593-10704612 | Msa0836990:intron | 45.0% | |
| CAAATCCTCATCACAAACCC+TGG | + | chr5_4:10704601-10704620 | None:intergenic | 45.0% | |
| CAGGGTTTGTGATGAGGATT+TGG | - | chr5_4:10704599-10704618 | Msa0836990:intron | 45.0% | |
| TTGCAGAGTTCTTGTCTTCC+TGG | - | chr5_4:10704670-10704689 | Msa0836990:intron | 45.0% | |
| TCTTGTCTTCCTGGTGATCA+AGG | - | chr5_4:10704679-10704698 | Msa0836990:intron | 45.0% | |
| GTGATCAAGGCTAACCTTCT+TGG | - | chr5_4:10704692-10704711 | Msa0836990:CDS | 45.0% | |
| AGCTGAATCAGAGACCAAGA+AGG | + | chr5_4:10704709-10704728 | None:intergenic | 45.0% | |
| TGGGACAGGATATATAGGAG+TGG | - | chr5_4:10704890-10704909 | Msa0836990:CDS | 45.0% | |
| !! | AAAAATCTATAAATTTATAA+GGG | + | chr5_4:10703952-10703971 | None:intergenic | 5.0% |
| !! | AAAAAATCTATAAATTTATA+AGG | + | chr5_4:10703953-10703972 | None:intergenic | 5.0% |
| !!! | TATAAATTTATAGATTTTTT+TGG | - | chr5_4:10703953-10703972 | Msa0836990:intron | 5.0% |
| CAATCTTGATGTGGCTGCTC+AGG | - | chr5_4:10702359-10702378 | Msa0836990:intron | 50.0% | |
| TAACCGCTGAATGGCACAGA+TGG | - | chr5_4:10703101-10703120 | Msa0836990:intron | 50.0% | |
| AACCGCTGAATGGCACAGAT+GGG | - | chr5_4:10703102-10703121 | Msa0836990:intron | 50.0% | |
| ! | AAGCAAGGAGAGCGTGCAAT+TGG | + | chr5_4:10703217-10703236 | None:intergenic | 50.0% |
| GCAAAAACCAAACACCGCTG+TGG | - | chr5_4:10703430-10703449 | Msa0836990:CDS | 50.0% | |
| AGAAATCCCACAGCGGTGTT+TGG | + | chr5_4:10703440-10703459 | None:intergenic | 50.0% | |
| CCCTACTAACCCTGAATCCT+TGG | + | chr5_4:10703658-10703677 | None:intergenic | 50.0% | |
| GGGATCATACGCCAGAAATG+AGG | - | chr5_4:10703917-10703936 | Msa0836990:intron | 50.0% | |
| GCAACATTAACGCCTCACCT+TGG | + | chr5_4:10703979-10703998 | None:intergenic | 50.0% | |
| ! | TGCTGCTTCTGTCGGTATAC+TGG | - | chr5_4:10704025-10704044 | Msa0836990:intron | 50.0% |
| GTTGGAGCCACTTCTGTTCT+TGG | - | chr5_4:10704481-10704500 | Msa0836990:intron | 50.0% | |
| CTTCAGCCCAAGAACAGAAG+TGG | + | chr5_4:10704491-10704510 | None:intergenic | 50.0% | |
| !! | TGAGAGTTTTCAGGGCTGCT+CGG | + | chr5_4:10704514-10704533 | None:intergenic | 50.0% |
| ! | ACTTCTGATGGCGAATGCGT+CGG | - | chr5_4:10704559-10704578 | Msa0836990:intron | 50.0% |
| GGAGGACTACTTCTTTGTCC+AGG | - | chr5_4:10704580-10704599 | Msa0836990:intron | 50.0% | |
| !! | GAAGGTTAGCCTTGATCACC+AGG | + | chr5_4:10704691-10704710 | None:intergenic | 50.0% |
| CTTGGTCTCTGATTCAGCTC+TGG | - | chr5_4:10704710-10704729 | Msa0836990:CDS | 50.0% | |
| AGTGGTTTCACTCTCAGCTC+AGG | - | chr5_4:10704908-10704927 | Msa0836990:exon | 50.0% | |
| GTGGTTTCACTCTCAGCTCA+GGG | - | chr5_4:10704909-10704928 | Msa0836990:exon | 50.0% | |
| CAACGATTCTGATGCCCCTG+AGG | - | chr5_4:10701928-10701947 | Msa0836990:intron | 55.0% | |
| ! | CACCCATCTGTGCCATTCAG+CGG | + | chr5_4:10703107-10703126 | None:intergenic | 55.0% |
| ACTGATAAAAGGGGGACGGG+TGG | - | chr5_4:10704168-10704187 | Msa0836990:intron | 55.0% | |
| CTGGCGTATGATCCCGGAAC+TGG | + | chr5_4:10703912-10703931 | None:intergenic | 60.0% | |
| ! | TCTGATGGCGAATGCGTCGG+AGG | - | chr5_4:10704562-10704581 | Msa0836990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10701850 | 10704984 | 10701850 | ID=Msa0836990;Name=Msa0836990 |
| chr5_4 | mRNA | 10701850 | 10704984 | 10701850 | ID=Msa0836990-mRNA-1;Parent=Msa0836990;Name=Msa0836990-mRNA-1;_AED=0.21;_eAED=0.21;_QI=70|1|1|1|0.8|0.66|6|130|184 |
| chr5_4 | exon | 10701850 | 10701936 | 10701850 | ID=Msa0836990-mRNA-1:exon:4750;Parent=Msa0836990-mRNA-1 |
| chr5_4 | exon | 10702854 | 10703065 | 10702854 | ID=Msa0836990-mRNA-1:exon:4749;Parent=Msa0836990-mRNA-1 |
| chr5_4 | exon | 10703167 | 10703250 | 10703167 | ID=Msa0836990-mRNA-1:exon:4748;Parent=Msa0836990-mRNA-1 |
| chr5_4 | exon | 10703336 | 10703536 | 10703336 | ID=Msa0836990-mRNA-1:exon:4747;Parent=Msa0836990-mRNA-1 |
| chr5_4 | exon | 10704683 | 10704735 | 10704683 | ID=Msa0836990-mRNA-1:exon:4746;Parent=Msa0836990-mRNA-1 |
| chr5_4 | exon | 10704867 | 10704984 | 10704867 | ID=Msa0836990-mRNA-1:exon:4745;Parent=Msa0836990-mRNA-1 |
| chr5_4 | five_prime_UTR | 10704915 | 10704984 | 10704915 | ID=Msa0836990-mRNA-1:five_prime_utr;Parent=Msa0836990-mRNA-1 |
| chr5_4 | CDS | 10704867 | 10704914 | 10704867 | ID=Msa0836990-mRNA-1:cds;Parent=Msa0836990-mRNA-1 |
| chr5_4 | CDS | 10704683 | 10704735 | 10704683 | ID=Msa0836990-mRNA-1:cds;Parent=Msa0836990-mRNA-1 |
| chr5_4 | CDS | 10703336 | 10703536 | 10703336 | ID=Msa0836990-mRNA-1:cds;Parent=Msa0836990-mRNA-1 |
| chr5_4 | CDS | 10703167 | 10703250 | 10703167 | ID=Msa0836990-mRNA-1:cds;Parent=Msa0836990-mRNA-1 |
| chr5_4 | CDS | 10702897 | 10703065 | 10702897 | ID=Msa0836990-mRNA-1:cds;Parent=Msa0836990-mRNA-1 |
| chr5_4 | three_prime_UTR | 10702854 | 10702896 | 10702854 | ID=Msa0836990-mRNA-1:three_prime_utr;Parent=Msa0836990-mRNA-1 |
| chr5_4 | three_prime_UTR | 10701850 | 10701936 | 10701850 | ID=Msa0836990-mRNA-1:three_prime_utr;Parent=Msa0836990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
