AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434180 MtrunA17_Chr3g0140441 98.707 232 3 0 1 232 1 232 2.19e-174 478
Msa0434180 MtrunA17_Chr8g0360221 40.076 262 125 4 1 232 1 260 2.70e-65 206
Msa0434180 MtrunA17_Chr8g0340501 39.095 243 126 3 8 230 7 247 8.91e-51 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434180 AT1G15215.2 44.355 248 107 4 12 230 11 256 7.83e-66 204
Msa0434180 AT3G18380.1 39.068 279 118 4 1 232 1 274 1.55e-61 196
Msa0434180 AT1G15215.4 44.118 238 102 4 12 220 11 246 3.89e-61 192
Msa0434180 AT1G15215.3 43.802 242 105 4 12 224 11 250 8.58e-61 191
Msa0434180 AT3G18380.2 38.929 280 118 5 1 232 1 275 1.06e-59 192
Msa0434180 AT3G18380.3 39.416 274 122 7 1 232 1 272 7.90e-59 189
Msa0434180 AT1G15215.1 35.484 155 69 4 12 137 11 163 1.83e-18 79.7

Find 73 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTCAGATTGAGAAAA+TGG 0.159542 3_2:-86964246 Msa0434180:intron
ATTAGAAGGGGTGGGTCTTT+TGG 0.206088 3_2:-86961609 Msa0434180:three_prime_UTR
GAACATAGTCTCCAACTTTC+AGG 0.226239 3_2:+86962173 None:intergenic
GACTCCCGACCTAATTAAAA+AGG 0.229909 3_2:+86961645 None:intergenic
TCCACTTCCACTTCCACTTC+GGG 0.246976 3_2:+86964504 None:intergenic
GAAAACAGACTTGAAACTTT+TGG 0.264857 3_2:+86964160 None:intergenic
CGAAAGGAACTGAGCGTTCC+CGG 0.320535 3_2:+86962215 None:intergenic
AGAGTCAGATTTGTTGGGTT+TGG 0.339869 3_2:-86962277 Msa0434180:CDS
AGTTTGCAGTTACCTGGATA+TGG 0.343452 3_2:-86961751 Msa0434180:three_prime_UTR
AGCTTATCATCTGGTCGTGC+TGG 0.372792 3_2:-86964065 Msa0434180:CDS
CAATGTGCGTAGAAATTAGA+AGG 0.376445 3_2:-86961623 Msa0434180:three_prime_UTR
AGACTATGTTCTGTGCTTCC+AGG 0.376950 3_2:-86962161 Msa0434180:intron
AAAAGTACCTCAAAATGAAT+TGG 0.377374 3_2:-86963863 Msa0434180:CDS
GGATATCATGCATTCTCCTT+TGG 0.380382 3_2:+86962009 None:intergenic
GAAGTCAGAGTCAGATTTGT+TGG 0.404906 3_2:-86962283 Msa0434180:CDS
AAATGTGACACCTGCAACCT+CGG 0.422569 3_2:+86961988 None:intergenic
TTCCACTTCCACTTCCACTT+CGG 0.427083 3_2:+86964503 None:intergenic
TATTTCTTTGACGTTCCAGC+TGG 0.431113 3_2:-86961791 Msa0434180:three_prime_UTR
CTGGGAAACCTGTCATCAAA+TGG 0.437508 3_2:-86964046 Msa0434180:CDS
GTCATGTATATCTAAGATCT+TGG 0.438432 3_2:+86961816 None:intergenic
GTAGGAAGGTACCTCAGAAT+TGG 0.440658 3_2:+86964332 None:intergenic
AGTGGGAAGTGGGAAGAGGA+AGG 0.442349 3_2:-86964481 Msa0434180:five_prime_UTR
GTTTGATTCTTGCCATATCC+AGG 0.442663 3_2:+86961739 None:intergenic
GTGGAAGTGGAAGTGGGAAG+TGG 0.453188 3_2:-86964492 Msa0434180:five_prime_UTR
TCCAACAGTTTGCAGTTACC+TGG 0.454630 3_2:-86961757 Msa0434180:three_prime_UTR
ACCTGAGTCCATTTGATGAC+AGG 0.456466 3_2:+86964038 None:intergenic
TGGAAGTGGGAAGTGGGAAG+AGG 0.469230 3_2:-86964485 Msa0434180:five_prime_UTR
TTCCAACTCTGATGAGTCTC+GGG 0.471097 3_2:+86963380 None:intergenic
CCCCGAAGTGGAAGTGGAAG+TGG 0.472517 3_2:-86964505 Msa0434180:five_prime_UTR
AAGTCAGAGTCAGATTTGTT+GGG 0.473120 3_2:-86962282 Msa0434180:CDS
GAGAAGCCCCGAAGTGGAAG+TGG 0.476668 3_2:-86964511 None:intergenic
TGGAAGTGGAAGTGGGAAGT+GGG 0.482433 3_2:-86964491 Msa0434180:five_prime_UTR
AGTGGAAGTGGAAGTGGAAG+TGG 0.483015 3_2:-86964499 Msa0434180:five_prime_UTR
TTGTCTTGTAGCTTATCATC+TGG 0.483456 3_2:-86964074 Msa0434180:intron
GCACACAGATTTCTTAGCAC+AGG 0.502053 3_2:-86962401 Msa0434180:CDS
CACACAGATTTCTTAGCACA+GGG 0.505636 3_2:-86962400 Msa0434180:CDS
TCCAGGTAACTGCAAACTGT+TGG 0.508034 3_2:+86961756 None:intergenic
TTGCTAAGGGAATCATCAAA+AGG 0.520977 3_2:-86964218 Msa0434180:CDS
ATTCCAACTCTGATGAGTCT+CGG 0.521550 3_2:+86963379 None:intergenic
TGCGTAGAAATTAGAAGGGG+TGG 0.521583 3_2:-86961618 Msa0434180:three_prime_UTR
CTCAGTTCCTTTCGAGAACA+CGG 0.527058 3_2:-86962206 Msa0434180:CDS
GTGGGAAGTGGGAAGAGGAA+GGG 0.531524 3_2:-86964480 Msa0434180:five_prime_UTR
GTCTGACCTTCCTTGCATTG+AGG 0.531906 3_2:+86963835 None:intergenic
ATTTGTTGGGTTTGGAGCTG+AGG 0.536262 3_2:-86962269 Msa0434180:CDS
TGCATGATATCCGAGGTTGC+AGG 0.537901 3_2:-86961998 Msa0434180:CDS
GTGGAAGTGGAAGTGGAAGT+GGG 0.539929 3_2:-86964498 Msa0434180:five_prime_UTR
GCATATGTGCTCACCATGCT+TGG 0.545702 3_2:+86963334 None:intergenic
CACCCGAGACTCATCAGAGT+TGG 0.547609 3_2:-86963382 Msa0434180:CDS
GCTTATCATCTGGTCGTGCT+GGG 0.552961 3_2:-86964064 Msa0434180:CDS
TTCTGGATTCACCAATTCTG+AGG 0.559706 3_2:-86964343 Msa0434180:intron
GAGTGTTCCAACCTGAAAGT+TGG 0.564740 3_2:-86962184 Msa0434180:CDS
ATAGTCTCCAACTTTCAGGT+TGG 0.570305 3_2:+86962177 None:intergenic
CCACTTCCACTTCCACTTCG+GGG 0.577237 3_2:+86964505 None:intergenic
ATTGGTTTCTCCTCAATGCA+AGG 0.583252 3_2:-86963845 Msa0434180:CDS
TCTAGGAAAGAGTTCGCTTG+AGG 0.588698 3_2:-86961854 Msa0434180:intron
GAACACTCCGTGTTCTCGAA+AGG 0.592495 3_2:+86962199 None:intergenic
ACCTGTCATCAAATGGACTC+AGG 0.592515 3_2:-86964039 Msa0434180:intron
TGGAAAGCTACTTACCCAGC+TGG 0.592982 3_2:+86961776 None:intergenic
CTCACATTGTAGAGATCCAA+AGG 0.594628 3_2:-86962025 Msa0434180:CDS
ATTTCTTTGACGTTCCAGCT+GGG 0.595424 3_2:-86961790 Msa0434180:three_prime_UTR
TGGAGCTGAGGAAGATGAGT+GGG 0.595934 3_2:-86962257 Msa0434180:CDS
GATCTTCGAAAGACCAAGCA+TGG 0.600049 3_2:-86963347 Msa0434180:intron
AATAGGGAGAAGCCCCGAAG+TGG 0.617953 3_2:-86964517 None:intergenic
GTTTCTCCTCAATGCAAGGA+AGG 0.620933 3_2:-86963841 Msa0434180:intron
GCGTAGAAATTAGAAGGGGT+GGG 0.621079 3_2:-86961617 Msa0434180:three_prime_UTR
AATGTGCGTAGAAATTAGAA+GGG 0.634839 3_2:-86961622 Msa0434180:three_prime_UTR
GAAAAGAGTTGAGTTGACGA+TGG 0.642726 3_2:-86964397 Msa0434180:exon
ATATCTAAGATCTTGGTCTG+TGG 0.670538 3_2:+86961823 None:intergenic
TTGGAGCTGAGGAAGATGAG+TGG 0.671942 3_2:-86962258 Msa0434180:CDS
AGGAGAATGCATGATATCCG+AGG 0.689625 3_2:-86962005 Msa0434180:CDS
ATGTGCGTAGAAATTAGAAG+GGG 0.701989 3_2:-86961621 Msa0434180:three_prime_UTR
ACACAGATTTCTTAGCACAG+GGG 0.750555 3_2:-86962399 Msa0434180:CDS
ATATGATCACGACAACAACG+AGG 0.764532 3_2:-86961958 Msa0434180:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGTTCCTTTATTTTTA+TGG - chr3_2:86961987-86962006 Msa0434180:CDS 15.0%
!!! AATTGTTCCTTTATTTTTAT+GGG - chr3_2:86961988-86962007 Msa0434180:CDS 15.0%
!! TAAAATTCCCATAAAAATAA+AGG + chr3_2:86961998-86962017 None:intergenic 15.0%
!! CTAACTAAATAAAAAAGTAA+AGG + chr3_2:86962425-86962444 None:intergenic 15.0%
!! TAAAAAATAACAATTTAGTG+TGG + chr3_2:86962739-86962758 None:intergenic 15.0%
!! ATATATACAACTTAAATGAA+TGG + chr3_2:86963232-86963251 None:intergenic 15.0%
!! TTATGGTTTATAGTTAAAAT+TGG + chr3_2:86963287-86963306 None:intergenic 15.0%
!! ACAAAATTTAATGATTTAGT+TGG + chr3_2:86963368-86963387 None:intergenic 15.0%
!! ATATAATTGTAAAAACTTAC+AGG + chr3_2:86963549-86963568 None:intergenic 15.0%
!!! TTTTCTTTTTGTTATATTCT+AGG - chr3_2:86964049-86964068 Msa0434180:CDS 15.0%
!!! TTTTCTGTTATTATTTTAGT+AGG - chr3_2:86964395-86964414 Msa0434180:exon 15.0%
!!! TTTCTGTTATTATTTTAGTA+GGG - chr3_2:86964396-86964415 Msa0434180:exon 15.0%
!! TGAAATAAGATTAAAGGTAA+CGG + chr3_2:86961658-86961677 None:intergenic 20.0%
!! CTGAAATGAAATAAGATTAA+AGG + chr3_2:86961664-86961683 None:intergenic 20.0%
!!! TAATTAAAAGTGCATTTCAA+AGG + chr3_2:86961969-86961988 None:intergenic 20.0%
!!! TAAATTTTAATGTCACTGAA+AGG - chr3_2:86962665-86962684 Msa0434180:intron 20.0%
!! AAATGTTTAATGCATAATTG+AGG + chr3_2:86962872-86962891 None:intergenic 20.0%
!!! AACTTTTTCACATCTATAAT+AGG - chr3_2:86963021-86963040 Msa0434180:intron 20.0%
!!! ATTTTTTAGCATGTATGATA+CGG + chr3_2:86963105-86963124 None:intergenic 20.0%
!! ATTATAAATCACACATGAAA+TGG + chr3_2:86964020-86964039 None:intergenic 20.0%
!!! CTCAATTTTTAATTATGTGT+TGG + chr3_2:86964496-86964515 None:intergenic 20.0%
! AGTAAAAGAAAAAAGTAGGA+AGG + chr3_2:86961605-86961624 None:intergenic 25.0%
! AGAGAGTAAAAGAAAAAAGT+AGG + chr3_2:86961609-86961628 None:intergenic 25.0%
! TTCATTTCAGATTGAGAAAA+TGG - chr3_2:86961674-86961693 Msa0434180:three_prime_UTR 25.0%
! AGAAAATGGAAAAATTGCTA+AGG - chr3_2:86961688-86961707 Msa0434180:three_prime_UTR 25.0%
! GAAAATGGAAAAATTGCTAA+GGG - chr3_2:86961689-86961708 Msa0434180:three_prime_UTR 25.0%
!!! TAGTTTTTGGTAAAAATCGA+GGG + chr3_2:86961739-86961758 None:intergenic 25.0%
!!! AATTCATTTTGAGGTACTTT+TGG + chr3_2:86962058-86962077 None:intergenic 25.0%
!!! AAAAGTACCTCAAAATGAAT+TGG - chr3_2:86962057-86962076 Msa0434180:CDS 25.0%
! ATGTAATTTACTTCAGAATG+CGG - chr3_2:86962242-86962261 Msa0434180:CDS 25.0%
!!! ATGTTAAACTGCATTGATTA+TGG - chr3_2:86962292-86962311 Msa0434180:intron 25.0%
!!! GTTTTAAGAAAATGACACTA+AGG - chr3_2:86962331-86962350 Msa0434180:intron 25.0%
! ATGAAGCTATAAACAATCTA+TGG + chr3_2:86962791-86962810 None:intergenic 25.0%
!! TATTGTTATAGCAGTTTTTG+TGG - chr3_2:86962957-86962976 Msa0434180:intron 25.0%
! TGTAGTATTCAGTTAATTTC+TGG - chr3_2:86963056-86963075 Msa0434180:intron 25.0%
!!! TTTTTTAGCATGTATGATAC+GGG + chr3_2:86963104-86963123 None:intergenic 25.0%
! ATACATGCTAAAAAATTGTG+AGG - chr3_2:86963109-86963128 Msa0434180:intron 25.0%
!! TCGTCTTTTATAACTATACA+TGG - chr3_2:86963168-86963187 Msa0434180:intron 25.0%
!! CTTTTATAACTATACATGGA+TGG - chr3_2:86963172-86963191 Msa0434180:intron 25.0%
! AAGATTCTTTGACTAAAATC+TGG - chr3_2:86963197-86963216 Msa0434180:intron 25.0%
! GTTGTATATATGTATATGTG+TGG - chr3_2:86963241-86963260 Msa0434180:intron 25.0%
!! CCTATATACTATCTGTTTTA+TGG + chr3_2:86963304-86963323 None:intergenic 25.0%
! CCATAAAACAGATAGTATAT+AGG - chr3_2:86963301-86963320 Msa0434180:intron 25.0%
!!! GTAAGAGTTTTGAAAATCAT+TGG + chr3_2:86963343-86963362 None:intergenic 25.0%
! TCAACATAAAAAATTCAGTC+CGG - chr3_2:86963686-86963705 Msa0434180:intron 25.0%
!!! CAATTGACATTTTGACTATT+TGG - chr3_2:86964206-86964225 Msa0434180:CDS 25.0%
!!! AATGCTGTTTTTTTTAGCAA+TGG - chr3_2:86964336-86964355 Msa0434180:intron 25.0%
!!! TGTTATTATTTTAGTAGGGA+AGG - chr3_2:86964400-86964419 Msa0434180:exon 25.0%
TTGGTGAATCCAGAAAAAAT+AGG + chr3_2:86961572-86961591 None:intergenic 30.0%
!!! CTAGTTTTTGGTAAAAATCG+AGG + chr3_2:86961740-86961759 None:intergenic 30.0%
!!! TGAAACTTTTGGCTAGTTTT+TGG + chr3_2:86961752-86961771 None:intergenic 30.0%
! GAAAACAGACTTGAAACTTT+TGG + chr3_2:86961763-86961782 None:intergenic 30.0%
! CTCAATCATTGTTTCTTTGT+TGG - chr3_2:86961786-86961805 Msa0434180:three_prime_UTR 30.0%
! ATCATTGTTTCTTTGTTGGT+CGG - chr3_2:86961790-86961809 Msa0434180:three_prime_UTR 30.0%
! GGGAATTTTAGATACATAGT+TGG - chr3_2:86962008-86962027 Msa0434180:CDS 30.0%
! AACAACGTTTAAGGTAATGT+AGG + chr3_2:86962113-86962132 None:intergenic 30.0%
ACATTACCTTAAACGTTGTT+AGG - chr3_2:86962113-86962132 Msa0434180:intron 30.0%
AACTATCCTAACAACGTTTA+AGG + chr3_2:86962122-86962141 None:intergenic 30.0%
TTAAACGTTGTTAGGATAGT+TGG - chr3_2:86962121-86962140 Msa0434180:intron 30.0%
TCCTGTGTATTTCAATGTTT+GGG - chr3_2:86962176-86962195 Msa0434180:CDS 30.0%
AGTAAAGGAAAACAGAAAGT+GGG + chr3_2:86962410-86962429 None:intergenic 30.0%
AAGTAAAGGAAAACAGAAAG+TGG + chr3_2:86962411-86962430 None:intergenic 30.0%
ATATATGCAGAATTCACGAA+TGG + chr3_2:86962636-86962655 None:intergenic 30.0%
!!! CTTCAATGCCATTTTTACTT+TGG - chr3_2:86962761-86962780 Msa0434180:intron 30.0%
AATCATTGGAGGAAGAAAAT+TGG + chr3_2:86963329-86963348 None:intergenic 30.0%
!!! AGAGTTTTGAAAATCATTGG+AGG + chr3_2:86963340-86963359 None:intergenic 30.0%
TACAATTTGTCCAAGTCTAA+AGG - chr3_2:86963464-86963483 Msa0434180:intron 30.0%
AAATCTAGTACACCCTATAA+GGG + chr3_2:86963585-86963604 None:intergenic 30.0%
AAAATCTAGTACACCCTATA+AGG + chr3_2:86963586-86963605 None:intergenic 30.0%
! AACAGTTTCTCCTTTTGTAA+AGG - chr3_2:86963615-86963634 Msa0434180:intron 30.0%
CAACATAAAAAATTCAGTCC+GGG - chr3_2:86963687-86963706 Msa0434180:intron 30.0%
! GACAGTTTCAATGTGTTTTT+AGG - chr3_2:86963842-86963861 Msa0434180:CDS 30.0%
!!! TTTCAATGTGTTTTTAGGAG+AGG - chr3_2:86963847-86963866 Msa0434180:CDS 30.0%
! GTCATGTATATCTAAGATCT+TGG + chr3_2:86964107-86964126 None:intergenic 30.0%
AATGTGCGTAGAAATTAGAA+GGG - chr3_2:86964298-86964317 Msa0434180:intron 30.0%
GAAAAAATAGGTCTGTTACG+AGG + chr3_2:86961560-86961579 None:intergenic 35.0%
!!! CGTAACAGACCTATTTTTTC+TGG - chr3_2:86961560-86961579 Msa0434180:three_prime_UTR 35.0%
TTGCTAAGGGAATCATCAAA+AGG - chr3_2:86961702-86961721 Msa0434180:three_prime_UTR 35.0%
TTGTCTTGTAGCTTATCATC+TGG - chr3_2:86961846-86961865 Msa0434180:CDS 35.0%
! GGAGAAACCAATTCATTTTG+AGG + chr3_2:86962067-86962086 None:intergenic 35.0%
GTCCTGTGTATTTCAATGTT+TGG - chr3_2:86962175-86962194 Msa0434180:CDS 35.0%
ATTTCAATGTTTGGGCCTTT+AGG - chr3_2:86962184-86962203 Msa0434180:CDS 35.0%
TTTCAATGTTTGGGCCTTTA+GGG - chr3_2:86962185-86962204 Msa0434180:CDS 35.0%
AGAAAATGACACTAAGGACA+TGG - chr3_2:86962337-86962356 Msa0434180:intron 35.0%
CTCAAATATTTGCGAACACA+AGG + chr3_2:86962454-86962473 None:intergenic 35.0%
!!! GTCTGAAATGAGTTTTTTGC+AGG - chr3_2:86962509-86962528 Msa0434180:intron 35.0%
! TGTGGATTAATATCAGCATG+TGG + chr3_2:86962721-86962740 None:intergenic 35.0%
!!! CAATGCCATTTTTACTTTGG+TGG - chr3_2:86962764-86962783 Msa0434180:intron 35.0%
ATGGACCACCAAAGTAAAAA+TGG + chr3_2:86962772-86962791 None:intergenic 35.0%
!!! TTGTGGAGACACATTTTTTG+TGG - chr3_2:86962974-86962993 Msa0434180:intron 35.0%
! ATTTTCGACAATGACATCAG+TGG - chr3_2:86963429-86963448 Msa0434180:intron 35.0%
TTCATAGCTTTCCCCTTATA+GGG - chr3_2:86963570-86963589 Msa0434180:intron 35.0%
AATCTAGTACACCCTATAAG+GGG + chr3_2:86963584-86963603 None:intergenic 35.0%
AAAGGAGAAACTGTTTAAGC+TGG + chr3_2:86963610-86963629 None:intergenic 35.0%
ACTCTGACTTCCTTTACAAA+AGG + chr3_2:86963628-86963647 None:intergenic 35.0%
! AAGTCAGAGTCAGATTTGTT+GGG - chr3_2:86963638-86963657 Msa0434180:intron 35.0%
AAACTTTGACCTAAATCACC+TGG + chr3_2:86963780-86963799 None:intergenic 35.0%
GATGTCCTTTAACTGTTCTA+TGG + chr3_2:86963808-86963827 None:intergenic 35.0%
!!! TGGGTGTTATTTCTGCATTT+TGG - chr3_2:86963985-86964004 Msa0434180:intron 35.0%
! ATATCTAAGATCTTGGTCTG+TGG + chr3_2:86964100-86964119 None:intergenic 35.0%
!! TTCTCCCTCCCTTTTTAATT+AGG - chr3_2:86964266-86964285 Msa0434180:intron 35.0%
ACTCCCGACCTAATTAAAAA+GGG + chr3_2:86964277-86964296 None:intergenic 35.0%
CAATGTGCGTAGAAATTAGA+AGG - chr3_2:86964297-86964316 Msa0434180:intron 35.0%
ATGTGCGTAGAAATTAGAAG+GGG - chr3_2:86964299-86964318 Msa0434180:intron 35.0%
!! GAAAAGAGTTGAGTTGACGA+TGG - chr3_2:86961523-86961542 Msa0434180:three_prime_UTR 40.0%
TTCTGGATTCACCAATTCTG+AGG - chr3_2:86961577-86961596 Msa0434180:three_prime_UTR 40.0%
! ATTGGTTTCTCCTCAATGCA+AGG - chr3_2:86962075-86962094 Msa0434180:intron 40.0%
GCCCAAACATTGAAATACAC+AGG + chr3_2:86962180-86962199 None:intergenic 40.0%
! CATATCTGAAGTGACCCTAA+AGG + chr3_2:86962202-86962221 None:intergenic 40.0%
AGCAATGAGGGACTATCAAA+AGG - chr3_2:86962372-86962391 Msa0434180:intron 40.0%
TTAAACCAGCACTTCTAGTG+AGG - chr3_2:86962482-86962501 Msa0434180:intron 40.0%
ATTCCAACTCTGATGAGTCT+CGG + chr3_2:86962544-86962563 None:intergenic 40.0%
AGTACCATTGATGTCACTGT+CGG - chr3_2:86962909-86962928 Msa0434180:intron 40.0%
! TGTGGTGTGTTTCAAGTGAA+AGG - chr3_2:86963259-86963278 Msa0434180:intron 40.0%
CACACAGATTTCTTAGCACA+GGG - chr3_2:86963520-86963539 Msa0434180:intron 40.0%
ACACAGATTTCTTAGCACAG+GGG - chr3_2:86963521-86963540 Msa0434180:intron 40.0%
GTTCATAGCTTTCCCCTTAT+AGG - chr3_2:86963569-86963588 Msa0434180:intron 40.0%
GAAGTCAGAGTCAGATTTGT+TGG - chr3_2:86963637-86963656 Msa0434180:intron 40.0%
!! AGAGTCAGATTTGTTGGGTT+TGG - chr3_2:86963643-86963662 Msa0434180:intron 40.0%
! ATAGTCTCCAACTTTCAGGT+TGG + chr3_2:86963746-86963765 None:intergenic 40.0%
GAACATAGTCTCCAACTTTC+AGG + chr3_2:86963750-86963769 None:intergenic 40.0%
CCTTTAACTGTTCTATGGTG+AGG + chr3_2:86963803-86963822 None:intergenic 40.0%
CCTCACCATAGAACAGTTAA+AGG - chr3_2:86963800-86963819 Msa0434180:intron 40.0%
CTCACATTGTAGAGATCCAA+AGG - chr3_2:86963895-86963914 Msa0434180:CDS 40.0%
GGATATCATGCATTCTCCTT+TGG + chr3_2:86963914-86963933 None:intergenic 40.0%
ATATGATCACGACAACAACG+AGG - chr3_2:86963962-86963981 Msa0434180:intron 40.0%
TATTTCTTTGACGTTCCAGC+TGG - chr3_2:86964129-86964148 Msa0434180:intron 40.0%
ATTTCTTTGACGTTCCAGCT+GGG - chr3_2:86964130-86964149 Msa0434180:intron 40.0%
AGTTTGCAGTTACCTGGATA+TGG - chr3_2:86964169-86964188 Msa0434180:intron 40.0%
GTTTGATTCTTGCCATATCC+AGG + chr3_2:86964184-86964203 None:intergenic 40.0%
CCGACCTAATTAAAAAGGGA+GGG + chr3_2:86964273-86964292 None:intergenic 40.0%
!! CCCTCCCTTTTTAATTAGGT+CGG - chr3_2:86964270-86964289 Msa0434180:intron 40.0%
!! CCTCCCTTTTTAATTAGGTC+GGG - chr3_2:86964271-86964290 Msa0434180:intron 40.0%
GACTCCCGACCTAATTAAAA+AGG + chr3_2:86964278-86964297 None:intergenic 40.0%
!! GTAGGAAGGTACCTCAGAAT+TGG + chr3_2:86961591-86961610 None:intergenic 45.0%
CTGGGAAACCTGTCATCAAA+TGG - chr3_2:86961874-86961893 Msa0434180:intron 45.0%
! ACCTGTCATCAAATGGACTC+AGG - chr3_2:86961881-86961900 Msa0434180:intron 45.0%
! ACCTGAGTCCATTTGATGAC+AGG + chr3_2:86961885-86961904 None:intergenic 45.0%
!! GAGGTACTTTTGGTGAGTCT+TGG + chr3_2:86962048-86962067 None:intergenic 45.0%
GTTTCTCCTCAATGCAAGGA+AGG - chr3_2:86962079-86962098 Msa0434180:intron 45.0%
ACTAAGGACATGGAAGTGAC+TGG - chr3_2:86962347-86962366 Msa0434180:intron 45.0%
CTAAGGACATGGAAGTGACT+GGG - chr3_2:86962348-86962367 Msa0434180:intron 45.0%
AAGTGACTGGGAAGCAATGA+GGG - chr3_2:86962360-86962379 Msa0434180:intron 45.0%
!! GAAGTGCTGGTTTAAGCAGT+TGG + chr3_2:86962477-86962496 None:intergenic 45.0%
TTCCAACTCTGATGAGTCTC+GGG + chr3_2:86962543-86962562 None:intergenic 45.0%
GATCTTCGAAAGACCAAGCA+TGG - chr3_2:86962573-86962592 Msa0434180:intron 45.0%
CACTGATCTCACTGTATTCC+TGG - chr3_2:86962811-86962830 Msa0434180:intron 45.0%
! TGTCAAATCGAAAGCATGCC+AGG + chr3_2:86962832-86962851 None:intergenic 45.0%
GATACCGACAGTGACATCAA+TGG + chr3_2:86962916-86962935 None:intergenic 45.0%
TTGCCTAGTCGTAGACATAC+AGG - chr3_2:86963400-86963419 Msa0434180:intron 45.0%
CTGCAGCAAACCTTTAGACT+TGG + chr3_2:86963477-86963496 None:intergenic 45.0%
!! CAAGTCTAAAGGTTTGCTGC+AGG - chr3_2:86963475-86963494 Msa0434180:intron 45.0%
GCACACAGATTTCTTAGCAC+AGG - chr3_2:86963519-86963538 Msa0434180:intron 45.0%
! ATTTGTTGGGTTTGGAGCTG+AGG - chr3_2:86963651-86963670 Msa0434180:intron 45.0%
CTCAGTTCCTTTCGAGAACA+CGG - chr3_2:86963714-86963733 Msa0434180:intron 45.0%
GAGTGTTCCAACCTGAAAGT+TGG - chr3_2:86963736-86963755 Msa0434180:intron 45.0%
AGACTATGTTCTGTGCTTCC+AGG - chr3_2:86963759-86963778 Msa0434180:intron 45.0%
TCTGTGCTTCCAGGTGATTT+AGG - chr3_2:86963768-86963787 Msa0434180:intron 45.0%
AGGAGAATGCATGATATCCG+AGG - chr3_2:86963915-86963934 Msa0434180:intron 45.0%
AAATGTGACACCTGCAACCT+CGG + chr3_2:86963935-86963954 None:intergenic 45.0%
TCTAGGAAAGAGTTCGCTTG+AGG - chr3_2:86964066-86964085 Msa0434180:CDS 45.0%
TCCAACAGTTTGCAGTTACC+TGG - chr3_2:86964163-86964182 Msa0434180:intron 45.0%
TCCAGGTAACTGCAAACTGT+TGG + chr3_2:86964167-86964186 None:intergenic 45.0%
CCCGACCTAATTAAAAAGGG+AGG + chr3_2:86964274-86964293 None:intergenic 45.0%
TGCGTAGAAATTAGAAGGGG+TGG - chr3_2:86964302-86964321 Msa0434180:intron 45.0%
GCGTAGAAATTAGAAGGGGT+GGG - chr3_2:86964303-86964322 Msa0434180:intron 45.0%
! ATTAGAAGGGGTGGGTCTTT+TGG - chr3_2:86964311-86964330 Msa0434180:intron 45.0%
AGTGGAAGTGGAAGTGGAAG+TGG - chr3_2:86961421-86961440 Msa0434180:three_prime_UTR 50.0%
GTGGAAGTGGAAGTGGAAGT+GGG - chr3_2:86961422-86961441 Msa0434180:three_prime_UTR 50.0%
TGGAAGTGGAAGTGGGAAGT+GGG - chr3_2:86961429-86961448 Msa0434180:three_prime_UTR 50.0%
AGCTTATCATCTGGTCGTGC+TGG - chr3_2:86961855-86961874 Msa0434180:intron 50.0%
GCTTATCATCTGGTCGTGCT+GGG - chr3_2:86961856-86961875 Msa0434180:intron 50.0%
GTCTGACCTTCCTTGCATTG+AGG + chr3_2:86962088-86962107 None:intergenic 50.0%
GAAGTGACTGGGAAGCAATG+AGG - chr3_2:86962359-86962378 Msa0434180:intron 50.0%
! CTCAACCTCACTAGAAGTGC+TGG + chr3_2:86962490-86962509 None:intergenic 50.0%
GCATATGTGCTCACCATGCT+TGG + chr3_2:86962589-86962608 None:intergenic 50.0%
GTGCCTGTATGTCTACGACT+AGG + chr3_2:86963406-86963425 None:intergenic 50.0%
TTGGAGCTGAGGAAGATGAG+TGG - chr3_2:86963662-86963681 Msa0434180:intron 50.0%
TGGAGCTGAGGAAGATGAGT+GGG - chr3_2:86963663-86963682 Msa0434180:intron 50.0%
GAACACTCCGTGTTCTCGAA+AGG + chr3_2:86963724-86963743 None:intergenic 50.0%
TGCATGATATCCGAGGTTGC+AGG - chr3_2:86963922-86963941 Msa0434180:intron 50.0%
TGATCACGACAACAACGAGG+TGG - chr3_2:86963965-86963984 Msa0434180:intron 50.0%
GATCACGACAACAACGAGGT+GGG - chr3_2:86963966-86963985 Msa0434180:intron 50.0%
TGGAAAGCTACTTACCCAGC+TGG + chr3_2:86964147-86964166 None:intergenic 50.0%
GTGGAAGTGGAAGTGGGAAG+TGG - chr3_2:86961428-86961447 Msa0434180:three_prime_UTR 55.0%
TGGAAGTGGGAAGTGGGAAG+AGG - chr3_2:86961435-86961454 Msa0434180:three_prime_UTR 55.0%
AGTGGGAAGTGGGAAGAGGA+AGG - chr3_2:86961439-86961458 Msa0434180:three_prime_UTR 55.0%
GTGGGAAGTGGGAAGAGGAA+GGG - chr3_2:86961440-86961459 Msa0434180:three_prime_UTR 55.0%
CACCCGAGACTCATCAGAGT+TGG - chr3_2:86962538-86962557 Msa0434180:intron 55.0%
CGAAAGGAACTGAGCGTTCC+CGG + chr3_2:86963708-86963727 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86961418 86964524 86961418 ID=Msa0434180;Name=Msa0434180
chr3_2 mRNA 86961418 86964524 86961418 ID=Msa0434180-mRNA-1;Parent=Msa0434180;Name=Msa0434180-mRNA-1;_AED=0.25;_eAED=0.25;_QI=124|1|1|1|0.87|0.88|9|409|232
chr3_2 exon 86961418 86961871 86961418 ID=Msa0434180-mRNA-1:exon:25260;Parent=Msa0434180-mRNA-1
chr3_2 exon 86961959 86962078 86961959 ID=Msa0434180-mRNA-1:exon:25259;Parent=Msa0434180-mRNA-1
chr3_2 exon 86962162 86962305 86962162 ID=Msa0434180-mRNA-1:exon:25258;Parent=Msa0434180-mRNA-1
chr3_2 exon 86962394 86962445 86962394 ID=Msa0434180-mRNA-1:exon:25257;Parent=Msa0434180-mRNA-1
chr3_2 exon 86963348 86963411 86963348 ID=Msa0434180-mRNA-1:exon:25256;Parent=Msa0434180-mRNA-1
chr3_2 exon 86963842 86963923 86963842 ID=Msa0434180-mRNA-1:exon:25255;Parent=Msa0434180-mRNA-1
chr3_2 exon 86964040 86964085 86964040 ID=Msa0434180-mRNA-1:exon:25254;Parent=Msa0434180-mRNA-1
chr3_2 exon 86964170 86964258 86964170 ID=Msa0434180-mRNA-1:exon:25253;Parent=Msa0434180-mRNA-1
chr3_2 exon 86964344 86964524 86964344 ID=Msa0434180-mRNA-1:exon:25252;Parent=Msa0434180-mRNA-1
chr3_2 five_prime_UTR 86964401 86964524 86964401 ID=Msa0434180-mRNA-1:five_prime_utr;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86964344 86964400 86964344 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86964170 86964258 86964170 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86964040 86964085 86964040 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86963842 86963923 86963842 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86963348 86963411 86963348 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86962394 86962445 86962394 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86962162 86962305 86962162 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86961959 86962078 86961959 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 CDS 86961827 86961871 86961827 ID=Msa0434180-mRNA-1:cds;Parent=Msa0434180-mRNA-1
chr3_2 three_prime_UTR 86961418 86961826 86961418 ID=Msa0434180-mRNA-1:three_prime_utr;Parent=Msa0434180-mRNA-1
Gene Sequence

>Msa0434180

ATGGATCGCTTGCGTCCTCGTAACAGACCTATTTTTTCTGGATTCACCAATTCTGAGATTGAGAAAATGGAAAAATTGCTAAGGGAATCATCAAAAGGACAATCATTCACCCTCGATTTTTACCAAAAACTAGCCAAAAGTTTCAACTTATCATCTGGTCGTGCTGGGAAACCTGTCATCAAATGGACTCAGATACATAGTTGGTTTCAGACTAGACTCCAAGACTCACCAAAAGTACCTCAAAATGAATTGGTTTCTCCTCAATGCAAGGAAGGAGAAAACACCCGAGACTCATCAGAGTTGGAATTTGAAGCGAGATCTTCGAAAGACCAAGCATGGTACGATGTTGAGACATTTCTTGCACACAGATTTCTTAGCACAGGGGAACCTGAAGTCAGAGTCAGATTTGTTGGGTTTGGAGCTGAGGAAGATGAGTGGGTCAACATAAAAAATTCAGTCCGGGAACGCTCAGTTCCTTTCGAGAACACGGAGTGTTCCAACCTGAAAGTTGGAGACTATGTTCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATCCGAGGTTGCAGGTGTCACATTTTAATTCGATATGATCACGACAACAACGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCACAGACCAAGATCTTAG

Protein sequence

>Msa0434180

MDRLRPRNRPIFSGFTNSEIEKMEKLLRESSKGQSFTLDFYQKLAKSFNLSSGRAGKPVIKWTQIHSWFQTRLQDSPKVPQNELVSPQCKEGENTRDSSELEFEARSSKDQAWYDVETFLAHRFLSTGEPEVRVRFVGFGAEEDEWVNIKNSVRERSVPFENTECSNLKVGDYVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCHILIRYDHDNNEERVRLRRLCHRPRS*