Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839580 | XP_003612452.1 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 6.77e-103 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839580 | sp|Q93VP2|HIP22_ARATH | 55.263 | 152 | 61 | 2 | 1 | 145 | 1 | 152 | 4.57e-56 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839580 | G7K2P7 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 3.24e-103 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0718570 | Msa0839580 | 0.802407 | 5.692262e-49 | -8.615850e-47 |
| Msa0759680 | Msa0839580 | 0.802299 | 5.993646e-49 | -8.615850e-47 |
| Msa0505660 | Msa0839580 | 0.800180 | 1.626174e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839580 | MtrunA17_Chr5g0407821 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 6.23e-107 | 300 |
| Msa0839580 | MtrunA17_Chr1g0160201 | 72.789 | 147 | 38 | 1 | 1 | 145 | 1 | 147 | 4.62e-77 | 225 |
| Msa0839580 | MtrunA17_Chr6g0448861 | 58.065 | 155 | 55 | 3 | 1 | 145 | 1 | 155 | 1.83e-58 | 178 |
| Msa0839580 | MtrunA17_Chr7g0251491 | 59.864 | 147 | 56 | 3 | 1 | 145 | 25 | 170 | 1.94e-56 | 174 |
| Msa0839580 | MtrunA17_Chr3g0124411 | 50.676 | 148 | 69 | 1 | 2 | 145 | 5 | 152 | 5.15e-47 | 149 |
| Msa0839580 | MtrunA17_Chr4g0036931 | 51.282 | 156 | 65 | 3 | 1 | 145 | 1 | 156 | 1.33e-46 | 148 |
| Msa0839580 | MtrunA17_Chr3g0145621 | 46.795 | 156 | 72 | 3 | 1 | 145 | 1 | 156 | 2.60e-45 | 145 |
| Msa0839580 | MtrunA17_Chr5g0422891 | 46.939 | 147 | 76 | 1 | 1 | 145 | 1 | 147 | 3.03e-45 | 144 |
| Msa0839580 | MtrunA17_Chr8g0382721 | 53.020 | 149 | 65 | 2 | 2 | 145 | 5 | 153 | 4.93e-45 | 144 |
| Msa0839580 | MtrunA17_Chr5g0405811 | 51.572 | 159 | 61 | 5 | 1 | 145 | 1 | 157 | 2.16e-44 | 142 |
| Msa0839580 | MtrunA17_Chr3g0115421 | 46.897 | 145 | 76 | 1 | 2 | 145 | 5 | 149 | 3.10e-38 | 127 |
| Msa0839580 | MtrunA17_Chr1g0189221 | 53.333 | 75 | 35 | 0 | 15 | 89 | 45 | 119 | 3.44e-23 | 89.4 |
| Msa0839580 | MtrunA17_Chr2g0325601 | 33.333 | 147 | 70 | 3 | 22 | 145 | 1 | 142 | 3.41e-22 | 85.9 |
| Msa0839580 | MtrunA17_Chr3g0080011 | 69.231 | 52 | 15 | 1 | 1 | 51 | 25 | 76 | 4.15e-18 | 74.3 |
| Msa0839580 | MtrunA17_Chr6g0471231 | 34.783 | 138 | 71 | 6 | 25 | 145 | 5 | 140 | 8.72e-18 | 74.7 |
| Msa0839580 | MtrunA17_Chr1g0191671 | 39.189 | 74 | 45 | 0 | 22 | 95 | 9 | 82 | 9.57e-14 | 67.0 |
| Msa0839580 | MtrunA17_Chr6g0460361 | 35.780 | 109 | 58 | 4 | 48 | 145 | 3 | 110 | 1.44e-13 | 62.8 |
| Msa0839580 | MtrunA17_Chr2g0287751 | 40.909 | 66 | 39 | 0 | 22 | 87 | 9 | 74 | 6.53e-13 | 64.7 |
| Msa0839580 | MtrunA17_Chr0c22g0493881 | 40.909 | 66 | 39 | 0 | 22 | 87 | 9 | 74 | 8.54e-13 | 64.3 |
| Msa0839580 | MtrunA17_Chr4g0065651 | 40.909 | 66 | 39 | 0 | 22 | 87 | 9 | 74 | 8.96e-13 | 64.3 |
| Msa0839580 | MtrunA17_Chr7g0269081 | 41.538 | 65 | 38 | 0 | 23 | 87 | 22 | 86 | 1.42e-12 | 63.5 |
| Msa0839580 | MtrunA17_Chr1g0208301 | 39.394 | 66 | 40 | 0 | 22 | 87 | 12 | 77 | 1.68e-12 | 63.5 |
| Msa0839580 | MtrunA17_Chr7g0218981 | 38.462 | 91 | 54 | 1 | 23 | 113 | 4 | 92 | 2.55e-12 | 60.1 |
| Msa0839580 | MtrunA17_Chr4g0065621 | 40.909 | 66 | 39 | 0 | 22 | 87 | 9 | 74 | 2.62e-12 | 62.8 |
| Msa0839580 | MtrunA17_Chr4g0050451 | 36.471 | 85 | 51 | 2 | 22 | 106 | 1 | 82 | 9.25e-12 | 57.8 |
| Msa0839580 | MtrunA17_Chr1g0198341 | 40.000 | 65 | 39 | 0 | 23 | 87 | 4 | 68 | 6.97e-11 | 55.1 |
| Msa0839580 | MtrunA17_Chr2g0296001 | 39.474 | 76 | 44 | 1 | 15 | 88 | 63 | 138 | 8.54e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839580 | AT1G22990.1 | 55.263 | 152 | 61 | 2 | 1 | 145 | 1 | 152 | 4.64e-57 | 175 |
| Msa0839580 | AT1G22990.2 | 52.632 | 152 | 60 | 3 | 1 | 145 | 1 | 147 | 3.62e-52 | 162 |
| Msa0839580 | AT1G71050.1 | 53.947 | 152 | 63 | 3 | 1 | 145 | 1 | 152 | 9.92e-52 | 161 |
| Msa0839580 | AT5G17450.1 | 54.362 | 149 | 64 | 2 | 1 | 145 | 1 | 149 | 1.35e-49 | 156 |
| Msa0839580 | AT4G39700.1 | 50.318 | 157 | 62 | 4 | 2 | 145 | 5 | 158 | 3.93e-42 | 137 |
| Msa0839580 | AT4G38580.1 | 47.059 | 153 | 73 | 3 | 1 | 145 | 1 | 153 | 1.98e-41 | 135 |
| Msa0839580 | AT4G38580.2 | 47.059 | 153 | 73 | 3 | 1 | 145 | 1 | 153 | 1.98e-41 | 135 |
| Msa0839580 | AT4G35060.1 | 41.830 | 153 | 81 | 3 | 1 | 145 | 1 | 153 | 1.15e-40 | 133 |
| Msa0839580 | AT5G66110.3 | 54.412 | 136 | 54 | 3 | 17 | 145 | 13 | 147 | 3.12e-40 | 132 |
| Msa0839580 | AT5G66110.1 | 54.412 | 136 | 54 | 3 | 17 | 145 | 13 | 147 | 3.12e-40 | 132 |
| Msa0839580 | AT4G08570.1 | 44.521 | 146 | 79 | 2 | 2 | 145 | 5 | 150 | 1.20e-37 | 125 |
| Msa0839580 | AT5G66110.2 | 52.459 | 122 | 50 | 3 | 31 | 145 | 1 | 121 | 8.77e-35 | 117 |
| Msa0839580 | AT5G17450.2 | 50.505 | 99 | 48 | 1 | 48 | 145 | 7 | 105 | 6.73e-32 | 110 |
| Msa0839580 | AT2G18196.1 | 37.419 | 155 | 82 | 4 | 3 | 145 | 27 | 178 | 9.50e-28 | 101 |
| Msa0839580 | AT4G10465.1 | 40.541 | 148 | 73 | 3 | 10 | 145 | 39 | 183 | 1.31e-27 | 101 |
| Msa0839580 | AT1G06330.1 | 37.662 | 154 | 62 | 3 | 22 | 145 | 1 | 150 | 3.21e-24 | 91.7 |
| Msa0839580 | AT2G18196.2 | 39.370 | 127 | 63 | 3 | 31 | 145 | 1 | 125 | 6.52e-23 | 87.8 |
| Msa0839580 | AT3G56891.1 | 33.117 | 154 | 71 | 5 | 22 | 145 | 15 | 166 | 8.52e-22 | 85.9 |
| Msa0839580 | AT3G56891.2 | 33.103 | 145 | 65 | 5 | 31 | 145 | 1 | 143 | 9.36e-20 | 80.1 |
| Msa0839580 | AT1G29100.2 | 30.405 | 148 | 71 | 4 | 25 | 145 | 5 | 147 | 1.72e-15 | 69.3 |
| Msa0839580 | AT3G48970.2 | 39.855 | 138 | 66 | 7 | 24 | 145 | 2 | 138 | 1.98e-14 | 66.2 |
| Msa0839580 | AT3G48970.3 | 39.855 | 138 | 66 | 7 | 24 | 145 | 2 | 138 | 1.98e-14 | 66.2 |
| Msa0839580 | AT3G48970.1 | 39.416 | 137 | 68 | 6 | 24 | 145 | 4 | 140 | 2.13e-14 | 66.2 |
| Msa0839580 | AT1G29100.1 | 29.452 | 146 | 71 | 4 | 27 | 145 | 1 | 141 | 3.79e-14 | 65.5 |
| Msa0839580 | AT3G06130.1 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 1.39e-11 | 61.2 |
| Msa0839580 | AT1G66240.1 | 43.077 | 65 | 37 | 0 | 23 | 87 | 33 | 97 | 1.55e-11 | 57.8 |
| Msa0839580 | AT3G06130.2 | 36.111 | 72 | 46 | 0 | 22 | 93 | 9 | 80 | 2.20e-11 | 60.5 |
| Msa0839580 | AT5G19090.2 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 3.75e-11 | 60.1 |
| Msa0839580 | AT5G19090.3 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 3.75e-11 | 60.1 |
| Msa0839580 | AT5G19090.5 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 3.78e-11 | 60.1 |
| Msa0839580 | AT5G19090.4 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 3.78e-11 | 60.1 |
| Msa0839580 | AT5G19090.1 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 3.78e-11 | 60.1 |
Find 44 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATAAAAGTATATAATT+TGG | 0.194791 | 5_4:-14637283 | Msa0839580:five_prime_UTR |
| AAGAACAAGAATTAAGAAAA+TGG | 0.213886 | 5_4:-14637148 | Msa0839580:exon |
| ATCTTATCATCTGTTCCATT+TGG | 0.247141 | 5_4:+14635939 | None:intergenic |
| AGTGGAAATAAAGGTGAAAA+TGG | 0.297522 | 5_4:-14636967 | Msa0839580:CDS |
| CTGTGCTCTGCACCTTCCTT+AGG | 0.323100 | 5_4:+14636087 | None:intergenic |
| TCTTATCATCTGTTCCATTT+GGG | 0.328722 | 5_4:+14635940 | None:intergenic |
| CACATGATTGAACATGCATT+AGG | 0.335274 | 5_4:+14635891 | None:intergenic |
| CTTATAGACAGTGGAAATAA+AGG | 0.347942 | 5_4:-14636976 | Msa0839580:intron |
| TCATCTGTTCCATTTGGGTT+TGG | 0.349576 | 5_4:+14635945 | None:intergenic |
| ACATGATTGAACATGCATTA+GGG | 0.359404 | 5_4:+14635892 | None:intergenic |
| CAAAGCAAGGTAACCGTGAC+TGG | 0.363196 | 5_4:-14636131 | Msa0839580:CDS |
| ATAAGGGAATTATGGAACTA+TGG | 0.365707 | 5_4:+14637300 | None:intergenic |
| GGATGTATGGGACAATATTA+TGG | 0.386593 | 5_4:+14637257 | None:intergenic |
| GTGTAAAGAAAGAAATAGAT+TGG | 0.390553 | 5_4:+14637176 | None:intergenic |
| TGGGAATGTGGATAGAAATA+AGG | 0.391392 | 5_4:-14636111 | Msa0839580:CDS |
| TGATGGAAAAGGAGGATGTA+TGG | 0.427682 | 5_4:+14637244 | None:intergenic |
| TGTTCCATTTGGGTTTGGTA+TGG | 0.447515 | 5_4:+14635950 | None:intergenic |
| ACCAAGTTAGCTTCAACATA+TGG | 0.451325 | 5_4:+14636044 | None:intergenic |
| TGTAAAGAAAGAAATAGATT+GGG | 0.462344 | 5_4:+14637177 | None:intergenic |
| GCCATATGTTGAAGCTAACT+TGG | 0.464839 | 5_4:-14636045 | Msa0839580:CDS |
| AGAACAAGAATTAAGAAAAT+GGG | 0.465426 | 5_4:-14637147 | Msa0839580:exon |
| AGCTTGTGAAATACCTGCAT+TGG | 0.470539 | 5_4:+14637069 | None:intergenic |
| TGCATATGCCTGTGTTATGT+AGG | 0.478193 | 5_4:+14636013 | None:intergenic |
| AATTCTGTTACTAACATGTC+AGG | 0.503481 | 5_4:-14636915 | Msa0839580:intron |
| CTAAGGAAGGTGCAGAGCAC+AGG | 0.508118 | 5_4:-14636086 | Msa0839580:CDS |
| AGGGTTATCATCACTGAAGA+AGG | 0.527497 | 5_4:+14635911 | None:intergenic |
| TGGATAGAAATAAGGTCCTA+AGG | 0.531057 | 5_4:-14636103 | Msa0839580:CDS |
| TTAGCCATACCAAACCCAAA+TGG | 0.531163 | 5_4:-14635954 | Msa0839580:CDS |
| GCATATGCCTGTGTTATGTA+GGG | 0.531267 | 5_4:+14636014 | None:intergenic |
| GATGGAAAAGGAGGATGTAT+GGG | 0.536168 | 5_4:+14637245 | None:intergenic |
| AATTAGACATAACTAAATAC+AGG | 0.537919 | 5_4:+14635716 | None:intergenic |
| TGTAGGTGTGAAGGAAGTAG+AGG | 0.545264 | 5_4:-14636165 | Msa0839580:intron |
| GGTAACCGTGACTGGGAATG+TGG | 0.560905 | 5_4:-14636123 | Msa0839580:CDS |
| AAAGAAACACAAACCAATGC+AGG | 0.567644 | 5_4:-14637082 | Msa0839580:intron |
| ATATGATAATGTAGGTGTGA+AGG | 0.572793 | 5_4:-14636174 | Msa0839580:intron |
| TAGAAATAAGGTCCTAAGGA+AGG | 0.572839 | 5_4:-14636099 | Msa0839580:CDS |
| TCTATCCACATTCCCAGTCA+CGG | 0.577046 | 5_4:+14636118 | None:intergenic |
| ATATGTTGAAGCTAACTTGG+TGG | 0.579782 | 5_4:-14636042 | Msa0839580:CDS |
| ATGGCTGTGAAAGAAGAGTT+CGG | 0.593996 | 5_4:-14636938 | Msa0839580:CDS |
| AAAGCAAGGTAACCGTGACT+GGG | 0.604590 | 5_4:-14636130 | Msa0839580:CDS |
| TGACAGTGAAGTAATCTGAA+AGG | 0.632257 | 5_4:+14637112 | None:intergenic |
| GGTGAAAAGAGAGCAAAGCA+AGG | 0.638066 | 5_4:-14636144 | Msa0839580:CDS |
| GGCATATCCCTACATAACAC+AGG | 0.656872 | 5_4:-14636021 | Msa0839580:CDS |
| AAGGTGAAAATGGACTGTGA+TGG | 0.710877 | 5_4:-14636957 | Msa0839580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTATATACTTTTATAA+GGG | + | chr5_4:14635742-14635761 | None:intergenic | 10.0% |
| !!! | CAAATTATATACTTTTATAA+GGG | + | chr5_4:14635742-14635761 | None:intergenic | 10.0% |
| !!! | CCAAATTATATACTTTTATA+AGG | + | chr5_4:14635743-14635762 | None:intergenic | 15.0% |
| !!! | CCTTATAAAAGTATATAATT+TGG | - | chr5_4:14635740-14635759 | Msa0839580:three_prime_UTR | 15.0% |
| !! | TTAGTACTTAAAAAGAAAAA+GGG | + | chr5_4:14635826-14635845 | None:intergenic | 15.0% |
| !!! | CCAAATTATATACTTTTATA+AGG | + | chr5_4:14635743-14635762 | None:intergenic | 15.0% |
| !!! | CCTTATAAAAGTATATAATT+TGG | - | chr5_4:14635740-14635759 | Msa0839580:three_prime_UTR | 15.0% |
| !! | TTAGTACTTAAAAAGAAAAA+GGG | + | chr5_4:14635826-14635845 | None:intergenic | 15.0% |
| !!! | ATACTTTTATAAGGGAATTA+TGG | + | chr5_4:14635734-14635753 | None:intergenic | 20.0% |
| !! | TAGTACTTAAAAAGAAAAAG+GGG | + | chr5_4:14635825-14635844 | None:intergenic | 20.0% |
| !! | GTTAGTACTTAAAAAGAAAA+AGG | + | chr5_4:14635827-14635846 | None:intergenic | 20.0% |
| !! | TGTAAAGAAAGAAATAGATT+GGG | + | chr5_4:14635849-14635868 | None:intergenic | 20.0% |
| !! | AAGAACAAGAATTAAGAAAA+TGG | - | chr5_4:14635875-14635894 | Msa0839580:exon | 20.0% |
| !! | AGAACAAGAATTAAGAAAAT+GGG | - | chr5_4:14635876-14635895 | Msa0839580:exon | 20.0% |
| !!! | TTTTGTTAAAACAACCAATT+TGG | + | chr5_4:14636793-14636812 | None:intergenic | 20.0% |
| !!! | TTACAACAATATGATAATGT+AGG | - | chr5_4:14636841-14636860 | Msa0839580:intron | 20.0% |
| !!! | TATTTTGATGTATTAAGACT+TGG | - | chr5_4:14637213-14637232 | Msa0839580:five_prime_UTR | 20.0% |
| !!! | TAATCAAGTTCTGTTTTTAT+GGG | - | chr5_4:14637281-14637300 | Msa0839580:five_prime_UTR | 20.0% |
| !! | AATTAGACATAACTAAATAC+AGG | + | chr5_4:14637310-14637329 | None:intergenic | 20.0% |
| !!! | ATACTTTTATAAGGGAATTA+TGG | + | chr5_4:14635734-14635753 | None:intergenic | 20.0% |
| !! | TAGTACTTAAAAAGAAAAAG+GGG | + | chr5_4:14635825-14635844 | None:intergenic | 20.0% |
| !! | GTTAGTACTTAAAAAGAAAA+AGG | + | chr5_4:14635827-14635846 | None:intergenic | 20.0% |
| !! | TGTAAAGAAAGAAATAGATT+GGG | + | chr5_4:14635849-14635868 | None:intergenic | 20.0% |
| !! | AAGAACAAGAATTAAGAAAA+TGG | - | chr5_4:14635875-14635894 | Msa0839580:exon | 20.0% |
| !! | AGAACAAGAATTAAGAAAAT+GGG | - | chr5_4:14635876-14635895 | Msa0839580:exon | 20.0% |
| !!! | TTTTGTTAAAACAACCAATT+TGG | + | chr5_4:14636793-14636812 | None:intergenic | 20.0% |
| !!! | TTACAACAATATGATAATGT+AGG | - | chr5_4:14636841-14636860 | Msa0839580:intron | 20.0% |
| !!! | TATTTTGATGTATTAAGACT+TGG | - | chr5_4:14637213-14637232 | Msa0839580:five_prime_UTR | 20.0% |
| !!! | TAATCAAGTTCTGTTTTTAT+GGG | - | chr5_4:14637281-14637300 | Msa0839580:five_prime_UTR | 20.0% |
| !! | AATTAGACATAACTAAATAC+AGG | + | chr5_4:14637310-14637329 | None:intergenic | 20.0% |
| ! | GTGTAAAGAAAGAAATAGAT+TGG | + | chr5_4:14635850-14635869 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTGTTTCTTTTTT+GGG | + | chr5_4:14635938-14635957 | None:intergenic | 25.0% |
| !!! | ATTGGTTTGTGTTTCTTTTT+TGG | + | chr5_4:14635939-14635958 | None:intergenic | 25.0% |
| ! | ATAAATGAGATAGGATACAT+AGG | + | chr5_4:14635980-14635999 | None:intergenic | 25.0% |
| ! | TACATGTACATAAATGAGAT+AGG | + | chr5_4:14635989-14636008 | None:intergenic | 25.0% |
| ! | TCTTCTTATCTCAAATCAAA+TGG | - | chr5_4:14636159-14636178 | Msa0839580:CDS | 25.0% |
| !! | AATCAAATGGCATGATTTTT+AGG | - | chr5_4:14636172-14636191 | Msa0839580:intron | 25.0% |
| ! | AATGTTCATATTCTCAATGA+AGG | - | chr5_4:14636211-14636230 | Msa0839580:intron | 25.0% |
| !!! | CTTTCAAGTGATTTTATGTA+CGG | + | chr5_4:14636263-14636282 | None:intergenic | 25.0% |
| ! | TTGATATTTCAAACGATTCT+CGG | - | chr5_4:14636531-14636550 | Msa0839580:intron | 25.0% |
| !! | ATTTCTAAGGGCAAATTATA+GGG | + | chr5_4:14636597-14636616 | None:intergenic | 25.0% |
| !! | AATTTCTAAGGGCAAATTAT+AGG | + | chr5_4:14636598-14636617 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTATAGCCAAAT+TGG | - | chr5_4:14636776-14636795 | Msa0839580:intron | 25.0% |
| !!! | GTAATCAAGTTCTGTTTTTA+TGG | - | chr5_4:14637280-14637299 | Msa0839580:five_prime_UTR | 25.0% |
| ! | GTGTAAAGAAAGAAATAGAT+TGG | + | chr5_4:14635850-14635869 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTGTTTCTTTTTT+GGG | + | chr5_4:14635938-14635957 | None:intergenic | 25.0% |
| !!! | ATTGGTTTGTGTTTCTTTTT+TGG | + | chr5_4:14635939-14635958 | None:intergenic | 25.0% |
| ! | ATAAATGAGATAGGATACAT+AGG | + | chr5_4:14635980-14635999 | None:intergenic | 25.0% |
| ! | TACATGTACATAAATGAGAT+AGG | + | chr5_4:14635989-14636008 | None:intergenic | 25.0% |
| ! | TCTTCTTATCTCAAATCAAA+TGG | - | chr5_4:14636159-14636178 | Msa0839580:CDS | 25.0% |
| !! | AATCAAATGGCATGATTTTT+AGG | - | chr5_4:14636172-14636191 | Msa0839580:intron | 25.0% |
| ! | AATGTTCATATTCTCAATGA+AGG | - | chr5_4:14636211-14636230 | Msa0839580:intron | 25.0% |
| !!! | CTTTCAAGTGATTTTATGTA+CGG | + | chr5_4:14636263-14636282 | None:intergenic | 25.0% |
| ! | TTGATATTTCAAACGATTCT+CGG | - | chr5_4:14636531-14636550 | Msa0839580:intron | 25.0% |
| !! | ATTTCTAAGGGCAAATTATA+GGG | + | chr5_4:14636597-14636616 | None:intergenic | 25.0% |
| !! | AATTTCTAAGGGCAAATTAT+AGG | + | chr5_4:14636598-14636617 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTATAGCCAAAT+TGG | - | chr5_4:14636776-14636795 | Msa0839580:intron | 25.0% |
| !!! | GTAATCAAGTTCTGTTTTTA+TGG | - | chr5_4:14637280-14637299 | Msa0839580:five_prime_UTR | 25.0% |
| ATAAGGGAATTATGGAACTA+TGG | + | chr5_4:14635726-14635745 | None:intergenic | 30.0% | |
| ! | AACAAAAATGATGGAAAAGG+AGG | + | chr5_4:14635790-14635809 | None:intergenic | 30.0% |
| ! | GGAAACAAAAATGATGGAAA+AGG | + | chr5_4:14635793-14635812 | None:intergenic | 30.0% |
| AACAGTGGAAACAAAAATGA+TGG | + | chr5_4:14635799-14635818 | None:intergenic | 30.0% | |
| !!! | TGGTTTGTGTTTCTTTTTTG+GGG | + | chr5_4:14635937-14635956 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTCTTATAGACAG+TGG | - | chr5_4:14636038-14636057 | Msa0839580:CDS | 30.0% |
| CTTATAGACAGTGGAAATAA+AGG | - | chr5_4:14636047-14636066 | Msa0839580:CDS | 30.0% | |
| AGTGGAAATAAAGGTGAAAA+TGG | - | chr5_4:14636056-14636075 | Msa0839580:CDS | 30.0% | |
| AATTCTGTTACTAACATGTC+AGG | - | chr5_4:14636108-14636127 | Msa0839580:CDS | 30.0% | |
| TTCATATTCTCAATGAAGGT+GGG | - | chr5_4:14636215-14636234 | Msa0839580:intron | 30.0% | |
| ! | GGTGGGTTCTATAATTTATA+CGG | - | chr5_4:14636232-14636251 | Msa0839580:intron | 30.0% |
| CTATTTGTAAGTAGAAACTC+CGG | + | chr5_4:14636497-14636516 | None:intergenic | 30.0% | |
| TCATATCTTCATTGATGAGT+GGG | - | chr5_4:14636631-14636650 | Msa0839580:intron | 30.0% | |
| ! | ATATGATAATGTAGGTGTGA+AGG | - | chr5_4:14636849-14636868 | Msa0839580:intron | 30.0% |
| TCTTATCATCTGTTCCATTT+GGG | + | chr5_4:14637086-14637105 | None:intergenic | 30.0% | |
| ATCTTATCATCTGTTCCATT+TGG | + | chr5_4:14637087-14637106 | None:intergenic | 30.0% | |
| ACATGATTGAACATGCATTA+GGG | + | chr5_4:14637134-14637153 | None:intergenic | 30.0% | |
| ATAAGGGAATTATGGAACTA+TGG | + | chr5_4:14635726-14635745 | None:intergenic | 30.0% | |
| ! | AACAAAAATGATGGAAAAGG+AGG | + | chr5_4:14635790-14635809 | None:intergenic | 30.0% |
| ! | GGAAACAAAAATGATGGAAA+AGG | + | chr5_4:14635793-14635812 | None:intergenic | 30.0% |
| AACAGTGGAAACAAAAATGA+TGG | + | chr5_4:14635799-14635818 | None:intergenic | 30.0% | |
| !!! | TGGTTTGTGTTTCTTTTTTG+GGG | + | chr5_4:14635937-14635956 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTCTTATAGACAG+TGG | - | chr5_4:14636038-14636057 | Msa0839580:CDS | 30.0% |
| CTTATAGACAGTGGAAATAA+AGG | - | chr5_4:14636047-14636066 | Msa0839580:CDS | 30.0% | |
| AGTGGAAATAAAGGTGAAAA+TGG | - | chr5_4:14636056-14636075 | Msa0839580:CDS | 30.0% | |
| AATTCTGTTACTAACATGTC+AGG | - | chr5_4:14636108-14636127 | Msa0839580:CDS | 30.0% | |
| TTCATATTCTCAATGAAGGT+GGG | - | chr5_4:14636215-14636234 | Msa0839580:intron | 30.0% | |
| ! | GGTGGGTTCTATAATTTATA+CGG | - | chr5_4:14636232-14636251 | Msa0839580:intron | 30.0% |
| CTATTTGTAAGTAGAAACTC+CGG | + | chr5_4:14636497-14636516 | None:intergenic | 30.0% | |
| TCATATCTTCATTGATGAGT+GGG | - | chr5_4:14636631-14636650 | Msa0839580:intron | 30.0% | |
| ! | ATATGATAATGTAGGTGTGA+AGG | - | chr5_4:14636849-14636868 | Msa0839580:intron | 30.0% |
| TCTTATCATCTGTTCCATTT+GGG | + | chr5_4:14637086-14637105 | None:intergenic | 30.0% | |
| ATCTTATCATCTGTTCCATT+TGG | + | chr5_4:14637087-14637106 | None:intergenic | 30.0% | |
| ACATGATTGAACATGCATTA+GGG | + | chr5_4:14637134-14637153 | None:intergenic | 30.0% | |
| GGATGTATGGGACAATATTA+TGG | + | chr5_4:14635769-14635788 | None:intergenic | 35.0% | |
| TGACAGTGAAGTAATCTGAA+AGG | + | chr5_4:14635914-14635933 | None:intergenic | 35.0% | |
| AAAGAAACACAAACCAATGC+AGG | - | chr5_4:14635941-14635960 | Msa0839580:CDS | 35.0% | |
| GTTCATATTCTCAATGAAGG+TGG | - | chr5_4:14636214-14636233 | Msa0839580:intron | 35.0% | |
| TTAGAAACTCTATCGACCAA+TGG | - | chr5_4:14636283-14636302 | Msa0839580:intron | 35.0% | |
| GTGTCAGTTCAACAAAAACA+AGG | - | chr5_4:14636370-14636389 | Msa0839580:intron | 35.0% | |
| CGACTTGAGAACAATTATCA+CGG | - | chr5_4:14636447-14636466 | Msa0839580:intron | 35.0% | |
| CTCATATCTTCATTGATGAG+TGG | - | chr5_4:14636630-14636649 | Msa0839580:intron | 35.0% | |
| TGGGAATGTGGATAGAAATA+AGG | - | chr5_4:14636912-14636931 | Msa0839580:intron | 35.0% | |
| TGGATAGAAATAAGGTCCTA+AGG | - | chr5_4:14636920-14636939 | Msa0839580:CDS | 35.0% | |
| TAGAAATAAGGTCCTAAGGA+AGG | - | chr5_4:14636924-14636943 | Msa0839580:CDS | 35.0% | |
| ! | CAGGAAAAAGAGCAAAGTTT+TGG | - | chr5_4:14636956-14636975 | Msa0839580:CDS | 35.0% |
| ! | ACCAAGTTAGCTTCAACATA+TGG | + | chr5_4:14636982-14637001 | None:intergenic | 35.0% |
| ATATGTTGAAGCTAACTTGG+TGG | - | chr5_4:14636981-14637000 | Msa0839580:intron | 35.0% | |
| TATGCAAAAAATGCACCTTC+TGG | - | chr5_4:14637027-14637046 | Msa0839580:intron | 35.0% | |
| ! | GTGTTTTTCACATATCCAGA+AGG | + | chr5_4:14637045-14637064 | None:intergenic | 35.0% |
| CACATGATTGAACATGCATT+AGG | + | chr5_4:14637135-14637154 | None:intergenic | 35.0% | |
| GGATGTATGGGACAATATTA+TGG | + | chr5_4:14635769-14635788 | None:intergenic | 35.0% | |
| TGACAGTGAAGTAATCTGAA+AGG | + | chr5_4:14635914-14635933 | None:intergenic | 35.0% | |
| AAAGAAACACAAACCAATGC+AGG | - | chr5_4:14635941-14635960 | Msa0839580:CDS | 35.0% | |
| GTTCATATTCTCAATGAAGG+TGG | - | chr5_4:14636214-14636233 | Msa0839580:intron | 35.0% | |
| TTAGAAACTCTATCGACCAA+TGG | - | chr5_4:14636283-14636302 | Msa0839580:intron | 35.0% | |
| GTGTCAGTTCAACAAAAACA+AGG | - | chr5_4:14636370-14636389 | Msa0839580:intron | 35.0% | |
| CGACTTGAGAACAATTATCA+CGG | - | chr5_4:14636447-14636466 | Msa0839580:intron | 35.0% | |
| CTCATATCTTCATTGATGAG+TGG | - | chr5_4:14636630-14636649 | Msa0839580:intron | 35.0% | |
| TGGGAATGTGGATAGAAATA+AGG | - | chr5_4:14636912-14636931 | Msa0839580:intron | 35.0% | |
| TGGATAGAAATAAGGTCCTA+AGG | - | chr5_4:14636920-14636939 | Msa0839580:CDS | 35.0% | |
| TAGAAATAAGGTCCTAAGGA+AGG | - | chr5_4:14636924-14636943 | Msa0839580:CDS | 35.0% | |
| ! | CAGGAAAAAGAGCAAAGTTT+TGG | - | chr5_4:14636956-14636975 | Msa0839580:CDS | 35.0% |
| ! | ACCAAGTTAGCTTCAACATA+TGG | + | chr5_4:14636982-14637001 | None:intergenic | 35.0% |
| ATATGTTGAAGCTAACTTGG+TGG | - | chr5_4:14636981-14637000 | Msa0839580:intron | 35.0% | |
| TATGCAAAAAATGCACCTTC+TGG | - | chr5_4:14637027-14637046 | Msa0839580:intron | 35.0% | |
| ! | GTGTTTTTCACATATCCAGA+AGG | + | chr5_4:14637045-14637064 | None:intergenic | 35.0% |
| CACATGATTGAACATGCATT+AGG | + | chr5_4:14637135-14637154 | None:intergenic | 35.0% | |
| GATGGAAAAGGAGGATGTAT+GGG | + | chr5_4:14635781-14635800 | None:intergenic | 40.0% | |
| TGATGGAAAAGGAGGATGTA+TGG | + | chr5_4:14635782-14635801 | None:intergenic | 40.0% | |
| AAGAAAAAGGGGTTGAACAG+TGG | + | chr5_4:14635814-14635833 | None:intergenic | 40.0% | |
| AGCTTGTGAAATACCTGCAT+TGG | + | chr5_4:14635957-14635976 | None:intergenic | 40.0% | |
| !! | AAGGTGAAAATGGACTGTGA+TGG | - | chr5_4:14636066-14636085 | Msa0839580:CDS | 40.0% |
| ATGGCTGTGAAAGAAGAGTT+CGG | - | chr5_4:14636085-14636104 | Msa0839580:CDS | 40.0% | |
| ATTGTGAACGTCTACTTTCG+AGG | + | chr5_4:14636313-14636332 | None:intergenic | 40.0% | |
| ACGGTCTCAGCGATAAAAAT+CGG | - | chr5_4:14636466-14636485 | Msa0839580:intron | 40.0% | |
| CAAACGATTCTCGGATATCT+AGG | - | chr5_4:14636540-14636559 | Msa0839580:intron | 40.0% | |
| ATAGGGTGAACTGCTTTGAT+AGG | + | chr5_4:14636580-14636599 | None:intergenic | 40.0% | |
| GCCATATGTTGAAGCTAACT+TGG | - | chr5_4:14636978-14636997 | Msa0839580:intron | 40.0% | |
| GCATATGCCTGTGTTATGTA+GGG | + | chr5_4:14637012-14637031 | None:intergenic | 40.0% | |
| TGCATATGCCTGTGTTATGT+AGG | + | chr5_4:14637013-14637032 | None:intergenic | 40.0% | |
| TTAGCCATACCAAACCCAAA+TGG | - | chr5_4:14637069-14637088 | Msa0839580:intron | 40.0% | |
| ! | TGTTCCATTTGGGTTTGGTA+TGG | + | chr5_4:14637076-14637095 | None:intergenic | 40.0% |
| ! | TCATCTGTTCCATTTGGGTT+TGG | + | chr5_4:14637081-14637100 | None:intergenic | 40.0% |
| AGGGTTATCATCACTGAAGA+AGG | + | chr5_4:14637115-14637134 | None:intergenic | 40.0% | |
| GATGGAAAAGGAGGATGTAT+GGG | + | chr5_4:14635781-14635800 | None:intergenic | 40.0% | |
| TGATGGAAAAGGAGGATGTA+TGG | + | chr5_4:14635782-14635801 | None:intergenic | 40.0% | |
| AAGAAAAAGGGGTTGAACAG+TGG | + | chr5_4:14635814-14635833 | None:intergenic | 40.0% | |
| AGCTTGTGAAATACCTGCAT+TGG | + | chr5_4:14635957-14635976 | None:intergenic | 40.0% | |
| !! | AAGGTGAAAATGGACTGTGA+TGG | - | chr5_4:14636066-14636085 | Msa0839580:CDS | 40.0% |
| ATGGCTGTGAAAGAAGAGTT+CGG | - | chr5_4:14636085-14636104 | Msa0839580:CDS | 40.0% | |
| ATTGTGAACGTCTACTTTCG+AGG | + | chr5_4:14636313-14636332 | None:intergenic | 40.0% | |
| ACGGTCTCAGCGATAAAAAT+CGG | - | chr5_4:14636466-14636485 | Msa0839580:intron | 40.0% | |
| CAAACGATTCTCGGATATCT+AGG | - | chr5_4:14636540-14636559 | Msa0839580:intron | 40.0% | |
| ATAGGGTGAACTGCTTTGAT+AGG | + | chr5_4:14636580-14636599 | None:intergenic | 40.0% | |
| GCCATATGTTGAAGCTAACT+TGG | - | chr5_4:14636978-14636997 | Msa0839580:intron | 40.0% | |
| GCATATGCCTGTGTTATGTA+GGG | + | chr5_4:14637012-14637031 | None:intergenic | 40.0% | |
| TGCATATGCCTGTGTTATGT+AGG | + | chr5_4:14637013-14637032 | None:intergenic | 40.0% | |
| TTAGCCATACCAAACCCAAA+TGG | - | chr5_4:14637069-14637088 | Msa0839580:intron | 40.0% | |
| ! | TGTTCCATTTGGGTTTGGTA+TGG | + | chr5_4:14637076-14637095 | None:intergenic | 40.0% |
| ! | TCATCTGTTCCATTTGGGTT+TGG | + | chr5_4:14637081-14637100 | None:intergenic | 40.0% |
| AGGGTTATCATCACTGAAGA+AGG | + | chr5_4:14637115-14637134 | None:intergenic | 40.0% | |
| CGGTCTCAGCGATAAAAATC+GGG | - | chr5_4:14636467-14636486 | Msa0839580:intron | 45.0% | |
| !! | GCGATAAAAATCGGGTTAGC+CGG | - | chr5_4:14636475-14636494 | Msa0839580:intron | 45.0% |
| TCGGATATCTAGGTTCACGA+TGG | - | chr5_4:14636550-14636569 | Msa0839580:intron | 45.0% | |
| TGTAGGTGTGAAGGAAGTAG+AGG | - | chr5_4:14636858-14636877 | Msa0839580:intron | 45.0% | |
| GGTGAAAAGAGAGCAAAGCA+AGG | - | chr5_4:14636879-14636898 | Msa0839580:intron | 45.0% | |
| AAAGCAAGGTAACCGTGACT+GGG | - | chr5_4:14636893-14636912 | Msa0839580:intron | 45.0% | |
| TCTATCCACATTCCCAGTCA+CGG | + | chr5_4:14636908-14636927 | None:intergenic | 45.0% | |
| GGCATATCCCTACATAACAC+AGG | - | chr5_4:14637002-14637021 | Msa0839580:intron | 45.0% | |
| CGGTCTCAGCGATAAAAATC+GGG | - | chr5_4:14636467-14636486 | Msa0839580:intron | 45.0% | |
| !! | GCGATAAAAATCGGGTTAGC+CGG | - | chr5_4:14636475-14636494 | Msa0839580:intron | 45.0% |
| TCGGATATCTAGGTTCACGA+TGG | - | chr5_4:14636550-14636569 | Msa0839580:intron | 45.0% | |
| TGTAGGTGTGAAGGAAGTAG+AGG | - | chr5_4:14636858-14636877 | Msa0839580:intron | 45.0% | |
| GGTGAAAAGAGAGCAAAGCA+AGG | - | chr5_4:14636879-14636898 | Msa0839580:intron | 45.0% | |
| AAAGCAAGGTAACCGTGACT+GGG | - | chr5_4:14636893-14636912 | Msa0839580:intron | 45.0% | |
| TCTATCCACATTCCCAGTCA+CGG | + | chr5_4:14636908-14636927 | None:intergenic | 45.0% | |
| GGCATATCCCTACATAACAC+AGG | - | chr5_4:14637002-14637021 | Msa0839580:intron | 45.0% | |
| !! | TATATTAAAAAAATTTCTAA+GGG | + | chr5_4:14636609-14636628 | None:intergenic | 5.0% |
| !! | TTATATTAAAAAAATTTCTA+AGG | + | chr5_4:14636610-14636629 | None:intergenic | 5.0% |
| !! | TATATTAAAAAAATTTCTAA+GGG | + | chr5_4:14636609-14636628 | None:intergenic | 5.0% |
| !! | TTATATTAAAAAAATTTCTA+AGG | + | chr5_4:14636610-14636629 | None:intergenic | 5.0% |
| !! | CTACTTTCGAGGAGCACCAT+TGG | + | chr5_4:14636302-14636321 | None:intergenic | 50.0% |
| CAAAGCAAGGTAACCGTGAC+TGG | - | chr5_4:14636892-14636911 | Msa0839580:intron | 50.0% | |
| !! | CTACTTTCGAGGAGCACCAT+TGG | + | chr5_4:14636302-14636321 | None:intergenic | 50.0% |
| CAAAGCAAGGTAACCGTGAC+TGG | - | chr5_4:14636892-14636911 | Msa0839580:intron | 50.0% | |
| GGTAACCGTGACTGGGAATG+TGG | - | chr5_4:14636900-14636919 | Msa0839580:intron | 55.0% | |
| CTGTGCTCTGCACCTTCCTT+AGG | + | chr5_4:14636939-14636958 | None:intergenic | 55.0% | |
| ! | CTAAGGAAGGTGCAGAGCAC+AGG | - | chr5_4:14636937-14636956 | Msa0839580:CDS | 55.0% |
| GGTAACCGTGACTGGGAATG+TGG | - | chr5_4:14636900-14636919 | Msa0839580:intron | 55.0% | |
| CTGTGCTCTGCACCTTCCTT+AGG | + | chr5_4:14636939-14636958 | None:intergenic | 55.0% | |
| ! | CTAAGGAAGGTGCAGAGCAC+AGG | - | chr5_4:14636937-14636956 | Msa0839580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 14635714 | 14637331 | 14635714 | ID=Msa0839580;Name=Msa0839580 |
| chr5_4 | mRNA | 14635714 | 14637331 | 14635714 | ID=Msa0839580-mRNA-1;Parent=Msa0839580;Name=Msa0839580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=180|1|1|1|1|1|3|176|145 |
| chr5_4 | exon | 14635714 | 14636182 | 14635714 | ID=Msa0839580-mRNA-1:exon:6393;Parent=Msa0839580-mRNA-1 |
| chr5_4 | exon | 14636916 | 14636991 | 14636916 | ID=Msa0839580-mRNA-1:exon:6392;Parent=Msa0839580-mRNA-1 |
| chr5_4 | exon | 14637083 | 14637331 | 14637083 | ID=Msa0839580-mRNA-1:exon:6391;Parent=Msa0839580-mRNA-1 |
| chr5_4 | five_prime_UTR | 14637152 | 14637331 | 14637152 | ID=Msa0839580-mRNA-1:five_prime_utr;Parent=Msa0839580-mRNA-1 |
| chr5_4 | CDS | 14637083 | 14637151 | 14637083 | ID=Msa0839580-mRNA-1:cds;Parent=Msa0839580-mRNA-1 |
| chr5_4 | CDS | 14636916 | 14636991 | 14636916 | ID=Msa0839580-mRNA-1:cds;Parent=Msa0839580-mRNA-1 |
| chr5_4 | CDS | 14635890 | 14636182 | 14635890 | ID=Msa0839580-mRNA-1:cds;Parent=Msa0839580-mRNA-1 |
| chr5_4 | three_prime_UTR | 14635714 | 14635889 | 14635714 | ID=Msa0839580-mRNA-1:three_prime_utr;Parent=Msa0839580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
