AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0505660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505660 MtrunA17_Chr3g0106921 95.312 320 15 0 1 320 1 320 0.0 632
Msa0505660 MtrunA17_Chr5g0432441 72.013 318 88 1 4 320 9 326 9.66e-169 471
Msa0505660 MtrunA17_Chr5g0438021 69.903 309 92 1 12 320 18 325 4.91e-161 452
Msa0505660 MtrunA17_Chr3g0129051 67.197 314 102 1 7 320 10 322 1.85e-154 435
Msa0505660 MtrunA17_Chr3g0129061 67.516 314 101 1 7 320 10 322 4.38e-154 434
Msa0505660 MtrunA17_Chr3g0129041 67.516 314 101 1 7 320 10 322 1.47e-150 425
Msa0505660 MtrunA17_Chr2g0320091 58.125 320 132 2 1 320 1 318 8.07e-133 380
Msa0505660 MtrunA17_Chr2g0320071 56.563 320 136 2 1 320 1 317 1.53e-130 374
Msa0505660 MtrunA17_Chr2g0320101 56.250 320 137 2 1 320 1 317 3.12e-129 371
Msa0505660 MtrunA17_Chr4g0038151 58.413 315 126 4 10 320 8 321 3.82e-129 371
Msa0505660 MtrunA17_Chr3g0114451 59.494 316 118 3 12 320 6 318 6.86e-129 370
Msa0505660 MtrunA17_Chr7g0244451 57.278 316 132 2 5 320 4 316 2.33e-127 366
Msa0505660 MtrunA17_Chr4g0038161 57.962 314 128 4 10 320 8 320 2.37e-127 366
Msa0505660 MtrunA17_Chr4g0013201 56.090 312 133 3 10 320 30 338 8.35e-127 365
Msa0505660 MtrunA17_Chr4g0043391 58.025 324 129 5 3 320 2 324 8.47e-127 365
Msa0505660 MtrunA17_Chr7g0244461 55.449 312 136 2 9 320 4 312 9.90e-127 364
Msa0505660 MtrunA17_Chr4g0038171 58.991 317 124 5 7 320 8 321 3.09e-126 363
Msa0505660 MtrunA17_Chr2g0320061 56.075 321 137 4 1 320 1 318 6.83e-126 362
Msa0505660 MtrunA17_Chr4g0013191 56.393 305 131 2 17 320 37 340 5.09e-123 356
Msa0505660 MtrunA17_Chr2g0320051 54.517 321 142 3 1 320 1 318 6.72e-123 355
Msa0505660 MtrunA17_Chr4g0013171 57.325 314 130 3 8 320 11 321 1.15e-121 352
Msa0505660 MtrunA17_Chr2g0320031 53.797 316 140 5 8 320 7 319 2.48e-118 343
Msa0505660 MtrunA17_Chr4g0013181 58.844 294 118 2 28 320 62 353 3.07e-118 344
Msa0505660 MtrunA17_Chr3g0106901 56.825 315 133 2 6 320 12 323 4.53e-118 343
Msa0505660 MtrunA17_Chr1g0213061 53.943 317 138 5 8 320 9 321 8.03e-116 337
Msa0505660 MtrunA17_Chr7g0224371 53.651 315 140 5 8 320 12 322 1.00e-115 337
Msa0505660 MtrunA17_Chr5g0432351 55.016 309 130 7 17 320 17 321 7.00e-114 332
Msa0505660 MtrunA17_Chr5g0432341 55.340 309 129 7 17 320 17 321 7.55e-114 332
Msa0505660 MtrunA17_Chr5g0432331 54.693 309 131 7 17 320 48 352 5.62e-112 328
Msa0505660 MtrunA17_Chr3g0107881 50.774 323 151 6 3 320 5 324 1.41e-109 321
Msa0505660 MtrunA17_Chr7g0258811 49.695 328 151 7 4 320 47 371 4.90e-104 309
Msa0505660 MtrunA17_Chr8g0372601 50.658 304 139 4 25 320 30 330 3.83e-102 303
Msa0505660 MtrunA17_Chr5g0404721 50.164 305 139 5 25 320 30 330 3.42e-101 300
Msa0505660 MtrunA17_Chr1g0175561 48.438 320 152 6 11 320 10 326 9.06e-100 296
Msa0505660 MtrunA17_Chr1g0155611 50.492 305 139 4 25 320 46 347 1.61e-98 294
Msa0505660 MtrunA17_Chr5g0402571 46.562 320 161 3 8 320 10 326 5.25e-98 292
Msa0505660 MtrunA17_Chr2g0299691 51.282 312 133 6 22 320 53 358 5.99e-98 293
Msa0505660 MtrunA17_Chr4g0070951 49.074 324 149 6 8 320 11 329 1.51e-97 291
Msa0505660 MtrunA17_Chr5g0402581 45.312 320 165 3 8 320 10 326 7.10e-96 286
Msa0505660 MtrunA17_Chr5g0400331 49.038 312 143 4 22 320 23 331 2.10e-95 285
Msa0505660 MtrunA17_Chr5g0432401 49.080 326 114 9 1 317 1 283 7.16e-95 283
Msa0505660 MtrunA17_Chr2g0292101 46.855 318 157 4 12 320 12 326 1.24e-94 284
Msa0505660 MtrunA17_Chr2g0292251 47.742 310 150 4 20 320 23 329 1.25e-94 284
Msa0505660 MtrunA17_Chr2g0291751 49.515 309 144 5 21 320 25 330 4.96e-94 283
Msa0505660 MtrunA17_Chr2g0292151 46.914 324 156 6 10 320 10 330 5.42e-94 283
Msa0505660 MtrunA17_Chr2g0292181 47.531 324 154 5 10 320 19 339 5.60e-94 283
Msa0505660 MtrunA17_Chr2g0292271 47.188 320 154 5 13 320 14 330 2.02e-93 281
Msa0505660 MtrunA17_Chr2g0292211 46.462 325 158 5 9 320 20 341 4.60e-93 281
Msa0505660 MtrunA17_Chr4g0068621 47.333 300 153 3 25 320 38 336 9.62e-93 279
Msa0505660 MtrunA17_Chr2g0292261 47.401 327 156 5 7 320 7 330 1.85e-92 279
Msa0505660 MtrunA17_Chr2g0292091 45.860 314 158 5 16 320 15 325 2.35e-92 278
Msa0505660 MtrunA17_Chr2g0292241 45.538 325 161 5 9 320 9 330 2.61e-91 276
Msa0505660 MtrunA17_Chr4g0013821 46.254 307 152 5 21 320 24 324 8.38e-91 274
Msa0505660 MtrunA17_Chr4g0013721 45.484 310 156 5 18 320 93 396 4.36e-89 272
Msa0505660 MtrunA17_Chr2g0292111 45.370 324 161 6 10 320 10 330 9.35e-89 269
Msa0505660 MtrunA17_Chr2g0292291 44.444 324 165 5 10 320 11 332 5.42e-87 265
Msa0505660 MtrunA17_Chr5g0421411 47.241 290 134 6 45 320 1 285 1.27e-86 261
Msa0505660 MtrunA17_Chr1g0204011 39.514 329 183 6 1 320 1 322 8.79e-83 253
Msa0505660 MtrunA17_Chr2g0322861 43.478 322 168 7 8 320 70 386 1.13e-82 255
Msa0505660 MtrunA17_Chr1g0188431 42.056 321 169 6 9 320 15 327 6.73e-81 248
Msa0505660 MtrunA17_Chr6g0477071 42.763 304 165 5 18 320 47 342 1.41e-80 248
Msa0505660 MtrunA17_Chr4g0024121 41.390 331 178 7 1 320 1 326 1.15e-79 245
Msa0505660 MtrunA17_Chr7g0225221 39.938 323 174 6 8 320 8 320 3.98e-76 236
Msa0505660 MtrunA17_Chr3g0128061 39.628 323 184 4 6 320 7 326 3.12e-75 234
Msa0505660 MtrunA17_Chr1g0194151 40.606 330 183 5 3 320 5 333 9.78e-75 233
Msa0505660 MtrunA17_Chr5g0405991 39.564 321 177 8 7 320 6 316 3.21e-74 231
Msa0505660 MtrunA17_Chr6g0467161 43.519 324 165 7 8 320 20 336 9.96e-74 230
Msa0505660 MtrunA17_Chr8g0371381 41.254 303 162 7 25 320 26 319 7.75e-73 228
Msa0505660 MtrunA17_Chr1g0157051 39.048 315 177 6 9 316 8 314 1.11e-72 227
Msa0505660 MtrunA17_Chr2g0279041 39.940 333 179 7 1 320 1 325 2.13e-71 224
Msa0505660 MtrunA17_Chr1g0194271 39.645 338 182 7 3 320 5 340 1.49e-70 222
Msa0505660 MtrunA17_Chr2g0296621 39.803 304 163 6 25 320 50 341 4.54e-70 221
Msa0505660 MtrunA17_Chr4g0063671 40.432 324 173 7 9 320 5 320 1.59e-69 219
Msa0505660 MtrunA17_Chr7g0254231 40.268 298 168 5 25 320 22 311 7.35e-68 214
Msa0505660 MtrunA17_Chr6g0460711 38.217 314 188 4 9 320 5 314 2.57e-67 213
Msa0505660 MtrunA17_Chr7g0254201 39.274 303 171 4 23 320 18 312 2.28e-66 211
Msa0505660 MtrunA17_Chr1g0164891 40.397 302 168 5 29 320 93 392 2.62e-66 213
Msa0505660 MtrunA17_Chr4g0076211 38.796 299 164 6 30 320 46 333 2.75e-66 211
Msa0505660 MtrunA17_Chr1g0197411 37.812 320 186 6 11 320 14 330 1.34e-65 209
Msa0505660 MtrunA17_Chr3g0114461 55.497 191 81 3 131 320 5 192 2.32e-65 204
Msa0505660 MtrunA17_Chr1g0181511 36.213 301 187 4 23 320 25 323 1.18e-64 206
Msa0505660 MtrunA17_Chr5g0401431 37.812 320 182 7 9 316 11 325 2.19e-64 206
Msa0505660 MtrunA17_Chr4g0075241 34.483 319 202 3 7 320 11 327 4.19e-64 205
Msa0505660 MtrunA17_Chr2g0316481 36.228 334 174 7 23 319 74 405 5.68e-64 207
Msa0505660 MtrunA17_Chr4g0046131 39.039 333 175 8 9 316 13 342 6.98e-64 205
Msa0505660 MtrunA17_Chr2g0316191 36.418 335 173 7 23 319 74 406 8.11e-64 207
Msa0505660 MtrunA17_Chr1g0181431 35.880 301 188 4 23 320 25 323 2.12e-63 203
Msa0505660 MtrunA17_Chr2g0316791 35.928 334 175 7 23 319 74 405 2.21e-63 206
Msa0505660 MtrunA17_Chr2g0278671 40.000 315 169 7 18 320 17 323 1.11e-62 201
Msa0505660 MtrunA17_Chr4g0072091 39.806 309 166 7 24 320 23 323 1.21e-62 201
Msa0505660 MtrunA17_Chr8g0364291 38.580 324 185 7 7 320 5 324 2.70e-62 201
Msa0505660 MtrunA17_Chr7g0268501 35.938 320 190 7 9 320 8 320 3.29e-62 200
Msa0505660 MtrunA17_Chr7g0268521 35.938 320 190 7 9 320 8 320 3.29e-62 200
Msa0505660 MtrunA17_Chr6g0467251 37.152 323 188 5 8 320 11 328 4.51e-62 201
Msa0505660 MtrunA17_Chr2g0316831 35.629 334 176 7 23 319 110 441 7.46e-62 203
Msa0505660 MtrunA17_Chr1g0148021 37.346 324 185 8 9 320 11 328 2.25e-61 198
Msa0505660 MtrunA17_Chr6g0467121 39.465 299 169 7 25 320 74 363 3.98e-61 199
Msa0505660 MtrunA17_Chr1g0181481 35.548 301 189 4 23 320 25 323 4.85e-61 197
Msa0505660 MtrunA17_Chr4g0053871 37.143 315 186 7 12 319 14 323 2.50e-60 195
Msa0505660 MtrunA17_Chr3g0136751 33.435 329 203 4 1 320 1 322 1.10e-59 194
Msa0505660 MtrunA17_Chr6g0451571 34.727 311 192 6 18 320 27 334 5.46e-59 192
Msa0505660 MtrunA17_Chr2g0311251 35.398 339 163 9 23 316 9 336 1.82e-57 189
Msa0505660 MtrunA17_Chr2g0279061 41.445 263 135 6 69 320 12 266 2.96e-57 186
Msa0505660 MtrunA17_Chr2g0311241 32.258 372 171 9 23 316 58 426 2.31e-56 188
Msa0505660 MtrunA17_Chr2g0329641 32.523 329 199 5 9 320 13 335 3.57e-56 185
Msa0505660 MtrunA17_Chr4g0074851 33.231 325 203 7 4 316 2 324 6.46e-56 184
Msa0505660 MtrunA17_Chr5g0413051 35.987 314 186 8 19 320 67 377 4.34e-54 181
Msa0505660 MtrunA17_Chr3g0114491 66.364 110 37 0 24 133 17 126 2.36e-45 150
Msa0505660 MtrunA17_Chr2g0292281 41.315 213 103 4 117 320 17 216 1.72e-44 152
Msa0505660 MtrunA17_Chr2g0316811 44.970 169 89 3 25 191 50 216 2.27e-44 154
Msa0505660 MtrunA17_Chr2g0316141 35.688 269 151 7 71 319 11 277 1.24e-43 151
Msa0505660 MtrunA17_Chr2g0316181 35.688 269 151 7 71 319 11 277 1.24e-43 151
Msa0505660 MtrunA17_Chr4g0004591 28.391 317 161 5 25 316 77 352 2.38e-41 147
Msa0505660 MtrunA17_Chr5g0432321 55.000 120 50 3 146 265 17 132 2.55e-34 122
Msa0505660 MtrunA17_Chr1g0181501 32.804 189 122 4 135 320 3 189 6.71e-30 112
Msa0505660 MtrunA17_Chr5g0432361 52.083 96 43 2 224 317 12 106 2.19e-26 100
Msa0505660 MtrunA17_Chr6g0468731 59.722 72 25 2 64 135 22 89 8.20e-21 85.5
Msa0505660 MtrunA17_Chr3g0104101 36.986 146 72 6 190 320 9 149 5.99e-20 84.7
Msa0505660 MtrunA17_Chr1g0181491 37.168 113 69 2 23 135 10 120 4.13e-19 82.4
Msa0505660 MtrunA17_Chr7g0254181 43.000 100 53 1 93 192 27 122 9.21e-19 81.6
Msa0505660 MtrunA17_Chr4g0013811 50.000 74 36 1 136 209 6 78 1.46e-18 79.0
Msa0505660 MtrunA17_Chr3g0137751 28.295 258 117 10 57 299 106 310 1.46e-18 84.7
Msa0505660 MtrunA17_Chr2g0316771 26.923 182 98 3 173 319 4 185 5.92e-13 66.6
Msa0505660 MtrunA17_Chr1g0196191 50.000 66 32 1 67 132 27 91 4.00e-12 63.5
Msa0505660 MtrunA17_Chr7g0254171 41.667 72 41 1 71 142 4 74 2.00e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505660 AT5G05340.1 69.799 298 89 1 23 320 28 324 2.45e-154 435
Msa0505660 AT5G58400.1 65.605 314 108 0 7 320 12 325 1.28e-153 433
Msa0505660 AT5G58390.1 65.385 312 108 0 9 320 5 316 3.00e-148 419
Msa0505660 AT1G14550.1 52.866 314 142 5 11 320 10 321 1.88e-113 332
Msa0505660 AT1G14540.1 50.000 312 151 4 11 320 7 315 3.70e-106 313
Msa0505660 AT5G06720.1 48.276 319 153 4 11 320 18 333 1.93e-103 306
Msa0505660 AT1G44970.1 49.518 311 145 4 19 320 39 346 8.11e-103 305
Msa0505660 AT4G36430.1 48.693 306 146 4 23 320 28 330 9.07e-103 305
Msa0505660 AT5G06730.1 47.962 319 154 5 11 320 19 334 5.13e-102 303
Msa0505660 AT2G18150.1 45.428 339 163 5 1 320 1 336 8.63e-102 302
Msa0505660 AT5G66390.1 47.403 308 151 4 21 320 29 333 1.39e-100 299
Msa0505660 AT3G50990.1 47.573 309 151 5 20 320 36 341 3.47e-98 293
Msa0505660 AT2G18140.1 46.624 311 155 4 18 320 28 335 1.34e-97 291
Msa0505660 AT2G35380.1 46.667 330 156 6 8 320 9 335 2.18e-95 286
Msa0505660 AT2G38390.1 47.678 323 154 7 10 320 14 333 9.14e-95 285
Msa0505660 AT4G16270.1 49.007 302 137 6 29 320 54 348 1.56e-93 281
Msa0505660 AT4G08780.1 47.134 314 152 5 18 320 17 327 2.05e-93 281
Msa0505660 AT3G32980.1 46.945 311 151 5 21 320 27 334 4.45e-92 278
Msa0505660 AT4G08770.1 47.452 314 151 5 18 320 17 327 9.91e-92 277
Msa0505660 AT1G68850.1 41.194 335 169 6 11 320 4 335 1.36e-91 276
Msa0505660 AT2G38380.1 47.059 323 156 7 10 320 14 333 1.89e-91 276
Msa0505660 AT1G49570.1 48.026 304 147 4 22 316 45 346 2.98e-91 276
Msa0505660 AT5G19890.1 46.605 324 150 7 11 320 13 327 1.70e-89 271
Msa0505660 AT2G22420.1 43.125 320 169 5 8 320 6 319 6.88e-86 261
Msa0505660 AT3G49110.1 44.969 318 161 5 14 320 22 336 8.75e-86 262
Msa0505660 AT3G49120.1 44.272 323 166 5 9 320 16 335 9.46e-86 262
Msa0505660 AT5G19880.1 43.653 323 166 6 11 320 10 329 3.08e-85 260
Msa0505660 AT4G33420.1 44.089 313 164 6 11 320 21 325 1.38e-81 250
Msa0505660 AT3G01190.1 42.249 329 173 7 1 320 1 321 1.59e-81 250
Msa0505660 AT4G33420.2 44.089 313 164 6 11 320 68 372 4.96e-81 251
Msa0505660 AT5G51890.1 40.549 328 181 6 1 320 1 322 1.74e-80 248
Msa0505660 AT5G17820.1 41.121 321 167 7 8 320 7 313 2.90e-77 239
Msa0505660 AT4G11290.1 40.432 324 178 6 9 320 6 326 1.06e-76 238
Msa0505660 AT1G05260.1 42.284 324 170 8 9 320 7 325 1.16e-76 238
Msa0505660 AT5G17820.2 41.121 321 167 7 8 320 60 366 2.75e-76 238
Msa0505660 AT5G15180.1 40.184 326 175 8 8 320 11 329 4.24e-75 234
Msa0505660 AT3G03670.1 39.815 324 178 5 7 320 5 321 1.75e-74 232
Msa0505660 AT5G14130.1 38.365 318 181 5 12 320 19 330 1.13e-73 230
Msa0505660 AT2G35380.2 49.798 247 108 5 87 320 4 247 2.46e-73 226
Msa0505660 AT5G14130.2 38.365 318 181 5 12 320 60 371 5.10e-73 230
Msa0505660 AT5G42180.1 40.764 314 171 7 11 317 9 314 1.52e-72 227
Msa0505660 AT5G64120.1 39.799 299 164 6 29 320 39 328 6.70e-72 226
Msa0505660 AT1G71695.1 40.803 299 171 4 25 320 44 339 3.48e-71 225
Msa0505660 AT3G21770.1 40.453 309 170 7 17 316 21 324 4.42e-71 224
Msa0505660 AT2G41480.1 39.450 327 176 8 8 320 10 328 4.89e-71 223
Msa0505660 AT4G26010.1 39.557 316 180 5 7 320 3 309 2.89e-69 218
Msa0505660 AT4G26010.2 38.941 321 185 5 2 320 26 337 6.85e-69 218
Msa0505660 AT1G05240.1 38.079 302 171 6 25 316 26 321 2.94e-68 216
Msa0505660 AT1G05250.1 38.079 302 171 6 25 316 26 321 2.94e-68 216
Msa0505660 AT1G30870.1 39.869 306 163 6 25 320 51 345 3.89e-68 217
Msa0505660 AT1G77100.1 40.867 323 173 8 9 320 4 319 2.99e-67 213
Msa0505660 AT5G40150.1 36.634 303 187 4 21 320 28 328 3.02e-67 214
Msa0505660 AT5G39580.1 39.688 320 176 8 10 320 8 319 1.29e-66 212
Msa0505660 AT2G18980.1 40.979 327 169 9 7 320 8 323 3.67e-66 211
Msa0505660 AT1G34510.1 38.978 313 180 7 10 320 6 309 4.86e-66 210
Msa0505660 AT4G25980.1 39.077 325 177 7 9 320 10 326 5.36e-66 210
Msa0505660 AT3G28200.1 35.644 303 191 4 20 320 16 316 8.09e-66 209
Msa0505660 AT5G67400.1 38.629 321 180 7 12 320 14 329 1.15e-65 209
Msa0505660 AT4G17690.1 38.333 300 178 5 25 320 26 322 2.51e-64 206
Msa0505660 AT5G47000.1 38.291 316 185 6 11 320 19 330 3.39e-64 206
Msa0505660 AT4G37530.1 37.580 314 181 6 18 320 20 329 7.27e-64 205
Msa0505660 AT4G31760.1 36.991 319 184 6 12 320 15 326 7.76e-64 205
Msa0505660 AT3G49960.1 37.695 321 183 8 12 320 14 329 6.66e-62 200
Msa0505660 AT2G24800.1 35.179 307 184 5 23 320 29 329 1.56e-61 199
Msa0505660 AT4G30170.1 38.907 311 169 6 22 320 24 325 2.05e-61 199
Msa0505660 AT2G34060.1 40.717 307 165 9 24 317 41 343 5.80e-61 198
Msa0505660 AT4G37520.1 37.742 310 176 7 23 320 25 329 1.17e-60 197
Msa0505660 AT4G33870.1 31.325 332 186 5 25 316 68 397 7.16e-60 197
Msa0505660 AT2G37130.1 35.974 303 184 6 24 320 29 327 1.89e-59 194
Msa0505660 AT1G24110.1 36.957 322 185 8 12 320 6 322 3.29e-59 193
Msa0505660 AT2G37130.2 36.120 299 181 6 28 320 2 296 5.67e-59 191
Msa0505660 AT4G37520.2 37.419 310 174 8 23 320 25 326 6.26e-59 192
Msa0505660 AT5G64100.1 33.041 342 196 7 1 320 1 331 8.84e-57 187
Msa0505660 AT5G64110.1 35.366 328 185 7 11 320 12 330 3.94e-56 185
Msa0505660 AT4G21960.1 33.123 317 201 5 9 316 9 323 8.96e-55 182
Msa0505660 AT4G37530.2 39.544 263 144 6 18 269 20 278 1.47e-54 179
Msa0505660 AT2G39040.1 37.061 313 184 7 19 320 40 350 6.58e-54 180
Msa0505660 AT5G22410.1 36.156 307 174 9 24 318 27 323 1.64e-52 176
Msa0505660 AT2G43480.1 32.177 317 196 5 16 320 26 335 3.49e-51 172
Msa0505660 AT5G24070.1 33.788 293 173 6 42 320 50 335 7.66e-51 172
Msa0505660 AT3G17070.1 31.646 316 204 4 12 316 21 335 1.97e-48 165
Msa0505660 AT4G25980.2 44.324 185 98 3 9 193 55 234 4.21e-45 155
Msa0505660 AT5G39580.2 40.183 219 119 5 10 226 8 216 6.38e-43 148
Msa0505660 AT2G24800.2 40.828 169 95 2 23 191 29 192 1.11e-37 134
Msa0505660 AT3G17070.2 29.885 261 174 4 67 320 18 276 5.59e-35 128
Msa0505660 AT4G32320.1 29.032 279 128 8 36 299 96 319 1.86e-19 87.8
Msa0505660 AT3G42570.1 30.693 101 70 0 93 193 49 149 2.46e-13 67.0

Find 67 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCCTTGTTTCCCAGTTAA+AGG 0.132682 3_4:-51259498 None:intergenic
CTAGCTTTCACTTGAAAATA+TGG 0.209249 3_4:+51255011 Msa0505660:exon
TTCTTATATTGCATTGCTTT+TGG 0.227972 3_4:+51255047 Msa0505660:CDS
TCTCCTGAGCCACTTGTTCT+AGG 0.244890 3_4:-51259264 None:intergenic
TCACAAGGGTTGATGTATTA+TGG 0.263654 3_4:+51259656 Msa0505660:three_prime_UTR
AAGGACATGGTTGCTTTATC+TGG 0.287607 3_4:+51258311 Msa0505660:CDS
GGAGATAATAAGCCTTTAAC+TGG 0.288260 3_4:+51259486 Msa0505660:CDS
AGCAATGCAATATAAGAATT+AGG 0.345453 3_4:-51255042 None:intergenic
TTGTAGGAGCTTGAATTAGA+AGG 0.346405 3_4:+51259533 Msa0505660:exon
CTGGGAAACAAGGGGAGATT+AGG 0.373206 3_4:+51259505 Msa0505660:CDS
CCTCTCACAGAATTGTTGTT+AGG 0.375225 3_4:-51257375 None:intergenic
GATTGATGCTATAAAATCTA+AGG 0.396860 3_4:+51257407 Msa0505660:CDS
TGTAGCTGCAATAATTAAGA+TGG 0.418174 3_4:+51259464 Msa0505660:CDS
AAGTTGAGATAAGGTTGGTT+AGG 0.432446 3_4:-51258265 None:intergenic
TTTCAGGAGCTCACACAATA+GGG 0.432739 3_4:+51259154 Msa0505660:intron
GGGAGATTAGGAAGAATTGT+AGG 0.435594 3_4:+51259517 Msa0505660:CDS
CTCCTGAGCCACTTGTTCTA+GGG 0.446044 3_4:-51259263 None:intergenic
GAGCTTTAAAAGTTGAGATA+AGG 0.452562 3_4:-51258274 None:intergenic
TTCTTCAAGTTAAAATATAG+TGG 0.452601 3_4:+51259600 Msa0505660:three_prime_UTR
ACAGTACATTTGCTAAGATA+AGG 0.454514 3_4:+51259229 Msa0505660:CDS
AAAACAAAATAGGGTTGTGA+TGG 0.466831 3_4:+51257300 Msa0505660:intron
AGGTTGGTTAGGTTAGATGT+AGG 0.468281 3_4:-51258254 None:intergenic
TGCCCTAGAACAAGTGGCTC+AGG 0.473241 3_4:+51259261 Msa0505660:CDS
AAGAATCTCATTATCAAAAG+AGG 0.477009 3_4:+51259345 Msa0505660:CDS
GTTAGGTTAGATGTAGGAGC+TGG 0.487957 3_4:-51258248 None:intergenic
AATTTCACTGCTGCAAACAC+TGG 0.493527 3_4:+51258218 Msa0505660:CDS
AAGCCTTTAACTGGGAAACA+AGG 0.501073 3_4:+51259495 Msa0505660:CDS
TTTAAAAGTTGAGATAAGGT+TGG 0.503940 3_4:-51258270 None:intergenic
AGATAAAGCAACCATGTCCT+TGG 0.505640 3_4:-51258309 None:intergenic
ATTTCACTGCTGCAAACACT+GGG 0.508356 3_4:+51258219 Msa0505660:CDS
CTGAAGAAGTCCCTATAAGA+AGG 0.508590 3_4:-51255074 None:intergenic
GATGACACTTCGTCCTTCAA+AGG 0.509796 3_4:+51257336 Msa0505660:CDS
TATTATGGATATGTATAAAG+TGG 0.517370 3_4:+51259671 Msa0505660:three_prime_UTR
TCTGATCAAGTACTCTTCAA+TGG 0.517394 3_4:+51259378 Msa0505660:CDS
TCAGCACATGAGACCACACC+AGG 0.521560 3_4:-51257444 None:intergenic
GTAGCTGCAATAATTAAGAT+GGG 0.525050 3_4:+51259465 Msa0505660:CDS
AGGACTTTCTGCCAAGGACA+TGG 0.532504 3_4:+51258298 Msa0505660:CDS
TAATTGTTGTCAAAATGAGT+TGG 0.535271 3_4:-51259318 None:intergenic
TGTAGGAGCTTGAATTAGAA+GGG 0.535801 3_4:+51259534 Msa0505660:exon
TGTTGCTGTCGTTGTATATG+TGG 0.550869 3_4:-51259203 None:intergenic
AGCTACAAAATCAGAATCAA+AGG 0.554480 3_4:-51259448 None:intergenic
GGTCTCATGTGCTGATATAG+TGG 0.564157 3_4:+51257452 Msa0505660:CDS
TGAAATAAATTATCATCACA+AGG 0.568019 3_4:+51259641 Msa0505660:three_prime_UTR
AACAGAGTCACGAGCAGTAA+TGG 0.570797 3_4:-51257475 None:intergenic
GCAAGGTGTACAAGTTTCAG+AGG 0.574999 3_4:+51259180 Msa0505660:CDS
AGCCTTTAACTGGGAAACAA+GGG 0.580782 3_4:+51259496 Msa0505660:CDS
ATGGATATGTATAAAGTGGA+AGG 0.581463 3_4:+51259675 Msa0505660:three_prime_UTR
AAGAACTGCCCTAGAACAAG+TGG 0.582954 3_4:+51259255 Msa0505660:CDS
CTCACACAATAGGGAGAGCA+AGG 0.588677 3_4:+51259163 Msa0505660:CDS
AAACAAAATAGGGTTGTGAT+GGG 0.589771 3_4:+51257301 Msa0505660:intron
AAGGTGGAAGCAATATGCCC+TGG 0.603139 3_4:+51257426 Msa0505660:CDS
AGATTTAACAAGTGAATCAG+TGG 0.606395 3_4:-51259406 None:intergenic
TGATGCTATAAAATCTAAGG+TGG 0.606554 3_4:+51257410 Msa0505660:CDS
AGTCGTGGAAGAAGAGACGA+AGG 0.608143 3_4:-51255206 None:intergenic
CCTAACAACAATTCTGTGAG+AGG 0.611912 3_4:+51257375 Msa0505660:CDS
AGCTCAAGGACTTTCTGCCA+AGG 0.614786 3_4:+51258292 Msa0505660:CDS
TTACATCAACAAAGCAGTCG+TGG 0.618609 3_4:-51255221 None:intergenic
AAGTTGGGAGAAGAGATTCA+AGG 0.621582 3_4:+51258189 Msa0505660:CDS
GATCAAGTACTCTTCAATGG+TGG 0.633726 3_4:+51259381 Msa0505660:CDS
GCCTTTAACTGGGAAACAAG+GGG 0.634825 3_4:+51259497 Msa0505660:CDS
GAAATAAATTATCATCACAA+GGG 0.635034 3_4:+51259642 Msa0505660:three_prime_UTR
GAGATAATAAGCCTTTAACT+GGG 0.654488 3_4:+51259487 Msa0505660:CDS
GTTGCCAAAGAAAATCGCAT+CGG 0.655320 3_4:+51255174 Msa0505660:CDS
GGAAGCAATATGCCCTGGTG+TGG 0.672684 3_4:+51257431 Msa0505660:CDS
GCAGACTGTTGTTAAAACAG+CGG 0.689081 3_4:+51255152 Msa0505660:CDS
CAGCACATGAGACCACACCA+GGG 0.765626 3_4:-51257443 None:intergenic
TTTCACTGCTGCAAACACTG+GGG 0.769355 3_4:+51258220 Msa0505660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAAACAATTAATTA+GGG - chr3_4:51255599-51255618 None:intergenic 10.0%
!! AAGAAAATAAACAATTAATT+AGG - chr3_4:51255600-51255619 None:intergenic 10.0%
!!! TAGTAAATAAATATTTTGAT+TGG - chr3_4:51256129-51256148 None:intergenic 10.0%
!!! TTGTTTTAATTTTCAAATAA+TGG - chr3_4:51258372-51258391 None:intergenic 10.0%
!!! GTATTTATTTGAAATAAAAA+TGG - chr3_4:51258733-51258752 None:intergenic 10.0%
!!! CTATATATGATCATATTTTT+AGG + chr3_4:51255261-51255280 Msa0505660:intron 15.0%
!!! GTTTTATTTTTATCTTTCAA+TGG + chr3_4:51255283-51255302 Msa0505660:intron 15.0%
!!! TTGTATAGATGTTTTAATAT+TGG - chr3_4:51255636-51255655 None:intergenic 15.0%
!! TTAAAACATCTATACAAAAA+AGG + chr3_4:51255639-51255658 Msa0505660:intron 15.0%
!!! TTTTATTCTTTGAAATTTGA+AGG + chr3_4:51256036-51256055 Msa0505660:intron 15.0%
!!! GATTGATTAATTTTTTTTGA+AGG - chr3_4:51256341-51256360 None:intergenic 15.0%
!! ATAACTACATAATTGTTATA+CGG + chr3_4:51258537-51258556 Msa0505660:intron 15.0%
!!! TTTTTTTTTTCTTAATTGCA+TGG - chr3_4:51258616-51258635 None:intergenic 15.0%
!!! TTTTATTTTAAAGAAACGAA+AGG + chr3_4:51259014-51259033 Msa0505660:intron 15.0%
!!! CATATCTATAATACAATTTT+AGG - chr3_4:51259741-51259760 None:intergenic 15.0%
!!! ATATTTTTTATTCATGACAC+AGG + chr3_4:51255342-51255361 Msa0505660:intron 20.0%
!!! ATCGTTATTTTTTTGCTTAT+TGG - chr3_4:51255411-51255430 None:intergenic 20.0%
!! AAAGAAATTATCAGATTTGT+GGG - chr3_4:51255447-51255466 None:intergenic 20.0%
!! AAAAGAAATTATCAGATTTG+TGG - chr3_4:51255448-51255467 None:intergenic 20.0%
!!! ATGCCAAATTATTTTTTTGA+AGG + chr3_4:51255531-51255550 Msa0505660:intron 20.0%
!! ACTCCTTCAAAAAAATAATT+TGG - chr3_4:51255537-51255556 None:intergenic 20.0%
!! ACAATGAATGCTTATAAATA+AGG + chr3_4:51255935-51255954 Msa0505660:intron 20.0%
!!! TGATGGTAGTTTTTAATTTA+AGG + chr3_4:51256266-51256285 Msa0505660:intron 20.0%
!!! GATGGTAGTTTTTAATTTAA+GGG + chr3_4:51256267-51256286 Msa0505660:intron 20.0%
!!! TAAATGCTATTTCACAAATT+CGG + chr3_4:51256292-51256311 Msa0505660:intron 20.0%
!!! TTCAAGTTATTGATATTTAG+AGG + chr3_4:51256689-51256708 Msa0505660:intron 20.0%
!! AACATGTAATAATCAAAACA+AGG - chr3_4:51256969-51256988 None:intergenic 20.0%
!! ATATTCTCAAATGGTAATAA+TGG - chr3_4:51257985-51258004 None:intergenic 20.0%
!! TTAGCTAAAAAAAAACACAA+GGG + chr3_4:51258017-51258036 Msa0505660:intron 20.0%
!!! ATACCCTTTTTATTAAACAA+TGG + chr3_4:51258087-51258106 Msa0505660:intron 20.0%
!!! TTAATTTGTATTTTGTAGCT+TGG + chr3_4:51258146-51258165 Msa0505660:intron 20.0%
!!! ATTAATCTTTTTGTCTCTTT+TGG + chr3_4:51258394-51258413 Msa0505660:intron 20.0%
!! AAAAGAAAAAATAACTAGCA+AGG + chr3_4:51258793-51258812 Msa0505660:intron 20.0%
!!! AGATTCATAGAATTTTCAAA+TGG - chr3_4:51258956-51258975 None:intergenic 20.0%
!! AAAATTCTATGAATCTTTGA+CGG + chr3_4:51258960-51258979 Msa0505660:intron 20.0%
!!! AATAAAACTGTTTTATTACG+TGG - chr3_4:51259001-51259020 None:intergenic 20.0%
!!! TCTATTCATGATATTTTATG+TGG + chr3_4:51259130-51259149 Msa0505660:intron 20.0%
!!! TTCTTCAAGTTAAAATATAG+TGG + chr3_4:51259600-51259619 Msa0505660:three_prime_UTR 20.0%
!! TGAAATAAATTATCATCACA+AGG + chr3_4:51259641-51259660 Msa0505660:three_prime_UTR 20.0%
!! GAAATAAATTATCATCACAA+GGG + chr3_4:51259642-51259661 Msa0505660:three_prime_UTR 20.0%
!! TATTATGGATATGTATAAAG+TGG + chr3_4:51259671-51259690 Msa0505660:three_prime_UTR 20.0%
! AGCAATGCAATATAAGAATT+AGG - chr3_4:51255045-51255064 None:intergenic 25.0%
!! TTCTTATATTGCATTGCTTT+TGG + chr3_4:51255047-51255066 Msa0505660:CDS 25.0%
!!! TGCACTGTTTTAAAAACTTT+AGG - chr3_4:51255135-51255154 None:intergenic 25.0%
! TTTATCTTTCAATGGTAGAT+TGG + chr3_4:51255291-51255310 Msa0505660:intron 25.0%
!!! TGTTTTTGTGTTTTAGTGTT+CGG + chr3_4:51255719-51255738 Msa0505660:intron 25.0%
! TCAACACTAGAAATACAATT+CGG - chr3_4:51255766-51255785 None:intergenic 25.0%
! TGAATGCTTATAAATAAGGA+TGG + chr3_4:51255939-51255958 Msa0505660:intron 25.0%
!!! ATATTCTATGCTTGTTTTGA+TGG - chr3_4:51256207-51256226 None:intergenic 25.0%
! GAGAAAAATGATTCAATTGA+TGG + chr3_4:51256249-51256268 Msa0505660:intron 25.0%
!!! AAATGCTATTTCACAAATTC+GGG + chr3_4:51256293-51256312 Msa0505660:intron 25.0%
! ACATATGCTTTCTTGAATTA+AGG + chr3_4:51256433-51256452 Msa0505660:intron 25.0%
! AAAAAACTCGAAACCTAAAA+TGG - chr3_4:51256503-51256522 None:intergenic 25.0%
!!! CGAGTTTTTTTTTTGACAAA+AGG + chr3_4:51256513-51256532 Msa0505660:intron 25.0%
! TAAAATTACCGAAAACCTAA+TGG + chr3_4:51256765-51256784 Msa0505660:intron 25.0%
! AAAAAGTAACCAAAAGAACA+AGG - chr3_4:51256903-51256922 None:intergenic 25.0%
! CTGCTTGAAAAAACAAAATA+GGG + chr3_4:51257291-51257310 Msa0505660:intron 25.0%
! GATTGATGCTATAAAATCTA+AGG + chr3_4:51257407-51257426 Msa0505660:CDS 25.0%
! AATCTACTAACACTGAATTA+GGG + chr3_4:51257521-51257540 Msa0505660:intron 25.0%
!!! TTTCAATGAGTCTTTTTTTG+TGG + chr3_4:51257581-51257600 Msa0505660:intron 25.0%
! AGATGTAAAACTACTAGTAA+CGG - chr3_4:51257793-51257812 None:intergenic 25.0%
!!! TTACTAGTAGTTTTACATCT+TGG + chr3_4:51257793-51257812 Msa0505660:intron 25.0%
! TTTACATCTTGGTTGTAAAT+CGG + chr3_4:51257804-51257823 Msa0505660:intron 25.0%
!!! ATTCATAATTAGTTTGCAGT+AGG - chr3_4:51257851-51257870 None:intergenic 25.0%
!! ACTTTCTTCTACAACTTTTT+CGG - chr3_4:51257950-51257969 None:intergenic 25.0%
! TTGTAGAAGAAAGTCTAATT+AGG + chr3_4:51257956-51257975 Msa0505660:intron 25.0%
! TATTACCATTTGAGAATATG+AGG + chr3_4:51257986-51258005 Msa0505660:intron 25.0%
! CTTAGCTAAAAAAAAACACA+AGG + chr3_4:51258016-51258035 Msa0505660:intron 25.0%
! GGACCATTGTTTAATAAAAA+GGG - chr3_4:51258093-51258112 None:intergenic 25.0%
! TGGACCATTGTTTAATAAAA+AGG - chr3_4:51258094-51258113 None:intergenic 25.0%
! TTTAAAAGTTGAGATAAGGT+TGG - chr3_4:51258273-51258292 None:intergenic 25.0%
! ACATCCTTGATTAATATTAG+TGG - chr3_4:51258471-51258490 None:intergenic 25.0%
! TCCATAATGATTTCTATGAT+TGG + chr3_4:51258676-51258695 Msa0505660:intron 25.0%
! CCATAATGATTTCTATGATT+GGG + chr3_4:51258677-51258696 Msa0505660:intron 25.0%
! GAAATAAAAATGGTTGTTAG+TGG - chr3_4:51258723-51258742 None:intergenic 25.0%
!!! AATAATGTCCCTTTTTTGTA+GGG - chr3_4:51259103-51259122 None:intergenic 25.0%
!! TGATATTTTATGTGGTTTTC+AGG + chr3_4:51259138-51259157 Msa0505660:intron 25.0%
! TAATTGTTGTCAAAATGAGT+TGG - chr3_4:51259321-51259340 None:intergenic 25.0%
! AAGAATCTCATTATCAAAAG+AGG + chr3_4:51259345-51259364 Msa0505660:CDS 25.0%
!! AATTTTGCAAATGCAAATCA+AGG - chr3_4:51259703-51259722 None:intergenic 25.0%
! CTAGCTTTCACTTGAAAATA+TGG + chr3_4:51255011-51255030 Msa0505660:exon 30.0%
!! TTTTGGTCTTCCTTCTTATA+GGG + chr3_4:51255064-51255083 Msa0505660:CDS 30.0%
! TGATAATTTCTTTTGTCCCT+GGG + chr3_4:51255454-51255473 Msa0505660:intron 30.0%
GTGTTTATACTTTATACCCA+GGG - chr3_4:51255473-51255492 None:intergenic 30.0%
AGTGTTTATACTTTATACCC+AGG - chr3_4:51255474-51255493 None:intergenic 30.0%
! TTGGCATTGAACTTATATCT+AGG - chr3_4:51255518-51255537 None:intergenic 30.0%
GATGATGATTATTCATACCT+CGG - chr3_4:51255965-51255984 None:intergenic 30.0%
GAGCAAAAGACTATTTAAGT+CGG - chr3_4:51256185-51256204 None:intergenic 30.0%
AAATCTCCTCATCATACAAA+TGG - chr3_4:51256657-51256676 None:intergenic 30.0%
! TTTACGTGTGCATCTTTTTA+GGG - chr3_4:51256749-51256768 None:intergenic 30.0%
! TTTTACGTGTGCATCTTTTT+AGG - chr3_4:51256750-51256769 None:intergenic 30.0%
!!! AAATTTGAGCCTTGTTCTTT+TGG + chr3_4:51256891-51256910 Msa0505660:intron 30.0%
GCTGCTTGAAAAAACAAAAT+AGG + chr3_4:51257290-51257309 Msa0505660:intron 30.0%
AAAACAAAATAGGGTTGTGA+TGG + chr3_4:51257300-51257319 Msa0505660:intron 30.0%
AAACAAAATAGGGTTGTGAT+GGG + chr3_4:51257301-51257320 Msa0505660:intron 30.0%
TGATGCTATAAAATCTAAGG+TGG + chr3_4:51257410-51257429 Msa0505660:CDS 30.0%
CTAATTCAGTGTTAGTAGAT+TGG - chr3_4:51257522-51257541 None:intergenic 30.0%
CAATCTACTAACACTGAATT+AGG + chr3_4:51257520-51257539 Msa0505660:intron 30.0%
!!! TTCTACAACTTTTTCGGATT+TGG - chr3_4:51257944-51257963 None:intergenic 30.0%
! ATTAGCCTCATATTCTCAAA+TGG - chr3_4:51257994-51258013 None:intergenic 30.0%
! ATTTGTATTTTGTAGCTTGG+AGG + chr3_4:51258149-51258168 Msa0505660:intron 30.0%
!! CTTTTTGGAAGGTAAAAGTT+GGG + chr3_4:51258174-51258193 Msa0505660:CDS 30.0%
!! GAGCTTTAAAAGTTGAGATA+AGG - chr3_4:51258277-51258296 None:intergenic 30.0%
!!! ATCTCAACTTTTAAAGCTCA+AGG + chr3_4:51258278-51258297 Msa0505660:CDS 30.0%
! AATCTTTTTGTCTCTTTTGG+AGG + chr3_4:51258397-51258416 Msa0505660:intron 30.0%
! ATCTTTTTGTCTCTTTTGGA+GGG + chr3_4:51258398-51258417 Msa0505660:intron 30.0%
CCTTGATTAATATTAGTGGT+TGG - chr3_4:51258467-51258486 None:intergenic 30.0%
CCAACCACTAATATTAATCA+AGG + chr3_4:51258464-51258483 Msa0505660:intron 30.0%
CCCAATCATAGAAATCATTA+TGG - chr3_4:51258680-51258699 None:intergenic 30.0%
!!! CCAAGTGTCTGTAATTTTTT+GGG + chr3_4:51258871-51258890 Msa0505660:intron 30.0%
! TTTGGGTTAAAACAATTGAG+CGG + chr3_4:51258888-51258907 Msa0505660:intron 30.0%
!! AAAACAATTGAGCGGATTTT+TGG + chr3_4:51258896-51258915 Msa0505660:intron 30.0%
!!! GGAATATGTTTTTTCACAGA+GGG - chr3_4:51258926-51258945 None:intergenic 30.0%
!!! TGGAATATGTTTTTTCACAG+AGG - chr3_4:51258927-51258946 None:intergenic 30.0%
! GAATTTTCAAATGGCAAAGT+TGG - chr3_4:51258947-51258966 None:intergenic 30.0%
AGAAGAAAACCCTACAAAAA+AGG + chr3_4:51259091-51259110 Msa0505660:intron 30.0%
GAAGAAAACCCTACAAAAAA+GGG + chr3_4:51259092-51259111 Msa0505660:intron 30.0%
!!! CAATAATGTCCCTTTTTTGT+AGG - chr3_4:51259104-51259123 None:intergenic 30.0%
! ACAGTACATTTGCTAAGATA+AGG + chr3_4:51259229-51259248 Msa0505660:CDS 30.0%
AGATTTAACAAGTGAATCAG+TGG - chr3_4:51259409-51259428 None:intergenic 30.0%
! AATCAAAGGTCTTTTCATTC+TGG - chr3_4:51259437-51259456 None:intergenic 30.0%
AGCTACAAAATCAGAATCAA+AGG - chr3_4:51259451-51259470 None:intergenic 30.0%
TGTAGCTGCAATAATTAAGA+TGG + chr3_4:51259464-51259483 Msa0505660:CDS 30.0%
GTAGCTGCAATAATTAAGAT+GGG + chr3_4:51259465-51259484 Msa0505660:CDS 30.0%
GAGATAATAAGCCTTTAACT+GGG + chr3_4:51259487-51259506 Msa0505660:CDS 30.0%
ATGGATATGTATAAAGTGGA+AGG + chr3_4:51259675-51259694 Msa0505660:three_prime_UTR 30.0%
!! CTTTTGGTCTTCCTTCTTAT+AGG + chr3_4:51255063-51255082 Msa0505660:CDS 35.0%
TGGTGTAAGTGTGTAGTAAA+TGG + chr3_4:51255373-51255392 Msa0505660:intron 35.0%
! CTGATAATTTCTTTTGTCCC+TGG + chr3_4:51255453-51255472 Msa0505660:intron 35.0%
TATACACAATCCGTTGTGAT+TGG + chr3_4:51255688-51255707 Msa0505660:intron 35.0%
CAAAAGCAAACCAATCACAA+CGG - chr3_4:51255701-51255720 None:intergenic 35.0%
!!! TTGTGTTTTAGTGTTCGGAT+TGG + chr3_4:51255724-51255743 Msa0505660:intron 35.0%
ACACTAGAAATACAATTCGG+AGG - chr3_4:51255763-51255782 None:intergenic 35.0%
CATTGACCATTTGTATGATG+AGG + chr3_4:51256648-51256667 Msa0505660:intron 35.0%
!! ATCTTTTTAGGGACAAGGTT+TGG - chr3_4:51256738-51256757 None:intergenic 35.0%
! CTTTCAAGCCATTAGGTTTT+CGG - chr3_4:51256776-51256795 None:intergenic 35.0%
ATATGACCTTTCAAGCCATT+AGG - chr3_4:51256783-51256802 None:intergenic 35.0%
GATAGATAGATACATGCACA+TGG + chr3_4:51256835-51256854 Msa0505660:intron 35.0%
GACATTACTTGAAGTCTTGA+AGG - chr3_4:51256870-51256889 None:intergenic 35.0%
ACATGTTATACACATGCACA+AGG + chr3_4:51256982-51257001 Msa0505660:intron 35.0%
CTTTAATAGCCCATTTGAGT+TGG + chr3_4:51257056-51257075 Msa0505660:intron 35.0%
!!! TGCAGTTTTTTCTCCTTTGA+AGG - chr3_4:51257352-51257371 None:intergenic 35.0%
ACTAACACTGAATTAGGGTT+AGG + chr3_4:51257526-51257545 Msa0505660:intron 35.0%
GTCATATTTGCACAAAATCG+TGG - chr3_4:51257634-51257653 None:intergenic 35.0%
ATGCTACTGCAATTCAATTG+TGG + chr3_4:51257656-51257675 Msa0505660:intron 35.0%
! ACATTTTGCACTCTAGATCA+TGG - chr3_4:51257702-51257721 None:intergenic 35.0%
ATTATGAATGATTACGACCG+TGG + chr3_4:51257862-51257881 Msa0505660:intron 35.0%
! AGGGTATAGCATTACTCTTT+TGG - chr3_4:51258074-51258093 None:intergenic 35.0%
! CCAACTTTTACCTTCCAAAA+AGG - chr3_4:51258176-51258195 None:intergenic 35.0%
!! CCTTTTTGGAAGGTAAAAGT+TGG + chr3_4:51258173-51258192 Msa0505660:CDS 35.0%
! AAGTTGAGATAAGGTTGGTT+AGG - chr3_4:51258268-51258287 None:intergenic 35.0%
GATGAACACATCATCTCAAT+TGG - chr3_4:51258655-51258674 None:intergenic 35.0%
AAATGGTTGTTAGTGGTAGT+TGG - chr3_4:51258716-51258735 None:intergenic 35.0%
TTGGCTACATGTATGAATCT+TGG - chr3_4:51258855-51258874 None:intergenic 35.0%
!!! GCCAAGTGTCTGTAATTTTT+TGG + chr3_4:51258870-51258889 Msa0505660:intron 35.0%
CCCAAAAAATTACAGACACT+TGG - chr3_4:51258874-51258893 None:intergenic 35.0%
TCTGATCAAGTACTCTTCAA+TGG + chr3_4:51259378-51259397 Msa0505660:CDS 35.0%
GGAGATAATAAGCCTTTAAC+TGG + chr3_4:51259486-51259505 Msa0505660:CDS 35.0%
TTGTAGGAGCTTGAATTAGA+AGG + chr3_4:51259533-51259552 Msa0505660:exon 35.0%
TGTAGGAGCTTGAATTAGAA+GGG + chr3_4:51259534-51259553 Msa0505660:exon 35.0%
!! TCACAAGGGTTGATGTATTA+TGG + chr3_4:51259656-51259675 Msa0505660:three_prime_UTR 35.0%
CTGAAGAAGTCCCTATAAGA+AGG - chr3_4:51255077-51255096 None:intergenic 40.0%
GCAGACTGTTGTTAAAACAG+CGG + chr3_4:51255152-51255171 Msa0505660:CDS 40.0%
GTTGCCAAAGAAAATCGCAT+CGG + chr3_4:51255174-51255193 Msa0505660:CDS 40.0%
TTACATCAACAAAGCAGTCG+TGG - chr3_4:51255224-51255243 None:intergenic 40.0%
TCATGACACAGGAAAAACTG+TGG + chr3_4:51255353-51255372 Msa0505660:intron 40.0%
AGTGTGTAGTAAATGGCTGT+TGG + chr3_4:51255380-51255399 Msa0505660:intron 40.0%
CTTATAAATAAGGATGGCCG+AGG + chr3_4:51255945-51255964 Msa0505660:intron 40.0%
! AATTAAGGTGTCCTCTTGAG+TGG + chr3_4:51256448-51256467 Msa0505660:intron 40.0%
!! TGTGCATCTTTTTAGGGACA+AGG - chr3_4:51256743-51256762 None:intergenic 40.0%
CGAAAACCTAATGGCTTGAA+AGG + chr3_4:51256774-51256793 Msa0505660:intron 40.0%
AGATACATGCACATGGATGA+TGG + chr3_4:51256842-51256861 Msa0505660:intron 40.0%
ACTACCAGACCAACTCAAAT+GGG - chr3_4:51257068-51257087 None:intergenic 40.0%
TACTACCAGACCAACTCAAA+TGG - chr3_4:51257069-51257088 None:intergenic 40.0%
!! TTGAGTTGGTCTGGTAGTAT+TGG + chr3_4:51257070-51257089 Msa0505660:intron 40.0%
! GTGCTCTTCTTCAAGGTATT+AGG + chr3_4:51257109-51257128 Msa0505660:intron 40.0%
! CCTCTCACAGAATTGTTGTT+AGG - chr3_4:51257378-51257397 None:intergenic 40.0%
CCTAACAACAATTCTGTGAG+AGG + chr3_4:51257375-51257394 Msa0505660:CDS 40.0%
! ACCGTGGATTTGAAATCTGA+CGG + chr3_4:51257878-51257897 Msa0505660:intron 40.0%
TCTGACGGCATGAATATGTA+AGG + chr3_4:51257893-51257912 Msa0505660:intron 40.0%
CTGACGGCATGAATATGTAA+GGG + chr3_4:51257894-51257913 Msa0505660:intron 40.0%
AAGTTGGGAGAAGAGATTCA+AGG + chr3_4:51258189-51258208 Msa0505660:CDS 40.0%
AATTTCACTGCTGCAAACAC+TGG + chr3_4:51258218-51258237 Msa0505660:CDS 40.0%
ATTTCACTGCTGCAAACACT+GGG + chr3_4:51258219-51258238 Msa0505660:CDS 40.0%
! AGGTTGGTTAGGTTAGATGT+AGG - chr3_4:51258257-51258276 None:intergenic 40.0%
AGATAAAGCAACCATGTCCT+TGG - chr3_4:51258312-51258331 None:intergenic 40.0%
! AAGGACATGGTTGCTTTATC+TGG + chr3_4:51258311-51258330 Msa0505660:CDS 40.0%
AGGGAGACACGATTTAGTTA+TGG + chr3_4:51258417-51258436 Msa0505660:intron 40.0%
GCTACATGTATGAATCTTGG+TGG - chr3_4:51258852-51258871 None:intergenic 40.0%
!! TTTTCAGGAGCTCACACAAT+AGG + chr3_4:51259153-51259172 Msa0505660:intron 40.0%
TTTCAGGAGCTCACACAATA+GGG + chr3_4:51259154-51259173 Msa0505660:intron 40.0%
TGTTGCTGTCGTTGTATATG+TGG - chr3_4:51259206-51259225 None:intergenic 40.0%
GATCAAGTACTCTTCAATGG+TGG + chr3_4:51259381-51259400 Msa0505660:CDS 40.0%
AAGCCTTTAACTGGGAAACA+AGG + chr3_4:51259495-51259514 Msa0505660:CDS 40.0%
AGCCTTTAACTGGGAAACAA+GGG + chr3_4:51259496-51259515 Msa0505660:CDS 40.0%
GGGAGATTAGGAAGAATTGT+AGG + chr3_4:51259517-51259536 Msa0505660:CDS 40.0%
! TGCTCCGATGCGATTTTCTT+TGG - chr3_4:51255181-51255200 None:intergenic 45.0%
!! AGTGGTGTGGTGTGTTACTT+TGG + chr3_4:51256466-51256485 Msa0505660:intron 45.0%
AACCTAAAATGGCTACCGTC+TGG - chr3_4:51256492-51256511 None:intergenic 45.0%
GCAGCATACATGTGCTATGT+AGG - chr3_4:51256624-51256643 None:intergenic 45.0%
!! ATAGCCCATTTGAGTTGGTC+TGG + chr3_4:51257061-51257080 Msa0505660:intron 45.0%
! TGAGAGTGTGCTCTTCTTCA+AGG + chr3_4:51257102-51257121 Msa0505660:intron 45.0%
GATGACACTTCGTCCTTCAA+AGG + chr3_4:51257336-51257355 Msa0505660:CDS 45.0%
! GGTCTCATGTGCTGATATAG+TGG + chr3_4:51257452-51257471 Msa0505660:CDS 45.0%
AACAGAGTCACGAGCAGTAA+TGG - chr3_4:51257478-51257497 None:intergenic 45.0%
GCCGTCAGATTTCAAATCCA+CGG - chr3_4:51257882-51257901 None:intergenic 45.0%
! TGTAGCTTGGAGGTCCTTTT+TGG + chr3_4:51258159-51258178 Msa0505660:intron 45.0%
TTTCACTGCTGCAAACACTG+GGG + chr3_4:51258220-51258239 Msa0505660:CDS 45.0%
GTTAGGTTAGATGTAGGAGC+TGG - chr3_4:51258251-51258270 None:intergenic 45.0%
GCAAGGTGTACAAGTTTCAG+AGG + chr3_4:51259180-51259199 Msa0505660:CDS 45.0%
AAGAACTGCCCTAGAACAAG+TGG + chr3_4:51259255-51259274 Msa0505660:CDS 45.0%
GCCTTTAACTGGGAAACAAG+GGG + chr3_4:51259497-51259516 Msa0505660:CDS 45.0%
! TCCCCTTGTTTCCCAGTTAA+AGG - chr3_4:51259501-51259520 None:intergenic 45.0%
!!! AAAACAAAATAAATATATTT+TGG - chr3_4:51258114-51258133 None:intergenic 5.0%
AGTCGTGGAAGAAGAGACGA+AGG - chr3_4:51255209-51255228 None:intergenic 50.0%
AACACACCACACCACTCAAG+AGG - chr3_4:51256462-51256481 None:intergenic 50.0%
!! GGTGTGTTACTTTGGCCAGA+CGG + chr3_4:51256474-51256493 Msa0505660:intron 50.0%
! TTTGGCGTGTGCAGTTGGTA+TGG - chr3_4:51256720-51256739 None:intergenic 50.0%
AAGGTGGAAGCAATATGCCC+TGG + chr3_4:51257426-51257445 Msa0505660:CDS 50.0%
! GCTTGGAGGTCCTTTTTGGA+AGG + chr3_4:51258163-51258182 Msa0505660:intron 50.0%
AGCTCAAGGACTTTCTGCCA+AGG + chr3_4:51258292-51258311 Msa0505660:CDS 50.0%
AGGACTTTCTGCCAAGGACA+TGG + chr3_4:51258298-51258317 Msa0505660:CDS 50.0%
CTCACACAATAGGGAGAGCA+AGG + chr3_4:51259163-51259182 Msa0505660:CDS 50.0%
CTCCTGAGCCACTTGTTCTA+GGG - chr3_4:51259266-51259285 None:intergenic 50.0%
TCTCCTGAGCCACTTGTTCT+AGG - chr3_4:51259267-51259286 None:intergenic 50.0%
CTGGGAAACAAGGGGAGATT+AGG + chr3_4:51259505-51259524 Msa0505660:CDS 50.0%
AGGTGTCCTCTTGAGTGGTG+TGG + chr3_4:51256453-51256472 Msa0505660:intron 55.0%
!! GGCCAGACGGTAGCCATTTT+AGG + chr3_4:51256487-51256506 Msa0505660:intron 55.0%
CAAGGTTTGGCGTGTGCAGT+TGG - chr3_4:51256725-51256744 None:intergenic 55.0%
GGAAGCAATATGCCCTGGTG+TGG + chr3_4:51257431-51257450 Msa0505660:CDS 55.0%
CAGCACATGAGACCACACCA+GGG - chr3_4:51257446-51257465 None:intergenic 55.0%
TCAGCACATGAGACCACACC+AGG - chr3_4:51257447-51257466 None:intergenic 55.0%
GGCATCCTTGAGTCGTTGCA+CGG + chr3_4:51257915-51257934 Msa0505660:intron 55.0%
GGATTCCGTGCAACGACTCA+AGG - chr3_4:51257923-51257942 None:intergenic 55.0%
TGCCCTAGAACAAGTGGCTC+AGG + chr3_4:51259261-51259280 Msa0505660:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 51254944 51259766 51254944 ID=Msa0505660;Name=Msa0505660
chr3_4 mRNA 51254944 51259766 51254944 ID=Msa0505660-mRNA-1;Parent=Msa0505660;Name=Msa0505660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=86|1|1|1|1|1|4|215|320
chr3_4 exon 51254944 51255239 51254944 ID=Msa0505660-mRNA-1:exon:11174;Parent=Msa0505660-mRNA-1
chr3_4 exon 51257312 51257503 51257312 ID=Msa0505660-mRNA-1:exon:11175;Parent=Msa0505660-mRNA-1
chr3_4 exon 51258164 51258332 51258164 ID=Msa0505660-mRNA-1:exon:11176;Parent=Msa0505660-mRNA-1
chr3_4 exon 51259160 51259766 51259160 ID=Msa0505660-mRNA-1:exon:11177;Parent=Msa0505660-mRNA-1
chr3_4 five_prime_UTR 51254944 51255029 51254944 ID=Msa0505660-mRNA-1:five_prime_utr;Parent=Msa0505660-mRNA-1
chr3_4 CDS 51255030 51255239 51255030 ID=Msa0505660-mRNA-1:cds;Parent=Msa0505660-mRNA-1
chr3_4 CDS 51257312 51257503 51257312 ID=Msa0505660-mRNA-1:cds;Parent=Msa0505660-mRNA-1
chr3_4 CDS 51258164 51258332 51258164 ID=Msa0505660-mRNA-1:cds;Parent=Msa0505660-mRNA-1
chr3_4 CDS 51259160 51259551 51259160 ID=Msa0505660-mRNA-1:cds;Parent=Msa0505660-mRNA-1
chr3_4 three_prime_UTR 51259552 51259766 51259552 ID=Msa0505660-mRNA-1:three_prime_utr;Parent=Msa0505660-mRNA-1
Gene Sequence

>Msa0505660

ATGGCACATTCTCCTAATTCTTATATTGCATTGCTTTTGGTCTTCCTTCTTATAGGGACTTCTTCAGCTCAACTTTCTGAGAACTTTTATTCTAAGAAATGTCCTAAAGTTTTTAAAACAGTGCAGACTGTTGTTAAAACAGCGGTTGCCAAAGAAAATCGCATCGGAGCATCTCTCCTTCGTCTCTTCTTCCACGACTGCTTTGTTGATGGTTGTGATGGGTCAATACTACTTGATGACACTTCGTCCTTCAAAGGAGAAAAAACTGCAGCTCCTAACAACAATTCTGTGAGAGGTTATGAAGTGATTGATGCTATAAAATCTAAGGTGGAAGCAATATGCCCTGGTGTGGTCTCATGTGCTGATATAGTGGCCATTACTGCTCGTGACTCTGTTGTGATTCTTGGAGGTCCTTTTTGGAAGGTAAAAGTTGGGAGAAGAGATTCAAGGACAGCTAATTTCACTGCTGCAAACACTGGGGTGATTCCAGCTCCTACATCTAACCTAACCAACCTTATCTCAACTTTTAAAGCTCAAGGACTTTCTGCCAAGGACATGGTTGCTTTATCTGGAGCTCACACAATAGGGAGAGCAAGGTGTACAAGTTTCAGAGGCCACATATACAACGACAGCAACATTGACAGTACATTTGCTAAGATAAGGCAAAAGAACTGCCCTAGAACAAGTGGCTCAGGAGACAACAATCTAGCAAATCTAGATTTGAGAACTCCAACTCATTTTGACAACAATTACTTCAAGAATCTCATTATCAAAAGAGGACTACTTCATTCTGATCAAGTACTCTTCAATGGTGGATCCACTGATTCACTTGTTAAATCTTATAGCCAGAATGAAAAGACCTTTGATTCTGATTTTGTAGCTGCAATAATTAAGATGGGAGATAATAAGCCTTTAACTGGGAAACAAGGGGAGATTAGGAAGAATTGTAGGAGCTTGAATTAG
Protein sequence

>Msa0505660

MAHSPNSYIALLLVFLLIGTSSAQLSENFYSKKCPKVFKTVQTVVKTAVAKENRIGASLLRLFFHDCFVDGCDGSILLDDTSSFKGEKTAAPNNNSVRGYEVIDAIKSKVEAICPGVVSCADIVAITARDSVVILGGPFWKVKVGRRDSRTANFTAANTGVIPAPTSNLTNLISTFKAQGLSAKDMVALSGAHTIGRARCTSFRGHIYNDSNIDSTFAKIRQKNCPRTSGSGDNNLANLDLRTPTHFDNNYFKNLIIKRGLLHSDQVLFNGGSTDSLVKSYSQNEKTFDSDFVAAIIKMGDNKPLTGKQGEIRKNCRSLN*