AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0718570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718570 MtrunA17_Chr5g0407821 99.310 145 1 0 1 145 1 145 3.44e-107 301
Msa0718570 MtrunA17_Chr1g0160201 72.789 147 38 1 1 145 1 147 1.69e-77 226
Msa0718570 MtrunA17_Chr6g0448861 58.065 155 55 3 1 145 1 155 7.95e-59 179
Msa0718570 MtrunA17_Chr7g0251491 59.864 147 56 3 1 145 25 170 6.28e-57 175
Msa0718570 MtrunA17_Chr3g0124411 50.676 148 69 1 2 145 5 152 1.12e-47 151
Msa0718570 MtrunA17_Chr8g0382721 54.362 149 63 2 2 145 5 153 1.00e-46 148
Msa0718570 MtrunA17_Chr4g0036931 50.641 156 66 3 1 145 1 156 1.39e-46 148
Msa0718570 MtrunA17_Chr3g0145621 47.436 156 71 3 1 145 1 156 2.07e-46 148
Msa0718570 MtrunA17_Chr5g0422891 46.939 147 76 1 1 145 1 147 1.44e-45 145
Msa0718570 MtrunA17_Chr5g0405811 50.314 159 63 4 1 145 1 157 6.71e-44 141
Msa0718570 MtrunA17_Chr3g0115421 47.586 145 75 1 2 145 5 149 2.22e-39 130
Msa0718570 MtrunA17_Chr1g0189221 53.333 75 35 0 15 89 45 119 1.85e-23 90.1
Msa0718570 MtrunA17_Chr2g0325601 32.653 147 71 3 22 145 1 142 5.60e-22 85.5
Msa0718570 MtrunA17_Chr3g0080011 69.231 52 15 1 1 51 25 76 3.68e-18 74.3
Msa0718570 MtrunA17_Chr6g0471231 34.058 138 72 6 25 145 5 140 3.83e-17 72.8
Msa0718570 MtrunA17_Chr1g0191671 39.189 74 45 0 22 95 9 82 2.45e-14 68.9
Msa0718570 MtrunA17_Chr7g0218981 39.560 91 53 1 23 113 4 92 1.49e-13 63.2
Msa0718570 MtrunA17_Chr6g0460361 34.862 109 59 4 48 145 3 110 3.17e-13 62.0
Msa0718570 MtrunA17_Chr2g0287751 39.394 66 40 0 22 87 9 74 1.11e-12 63.9
Msa0718570 MtrunA17_Chr0c22g0493881 39.394 66 40 0 22 87 9 74 1.29e-12 63.9
Msa0718570 MtrunA17_Chr4g0065651 39.394 66 40 0 22 87 9 74 1.40e-12 63.9
Msa0718570 MtrunA17_Chr7g0269081 40.000 65 39 0 23 87 22 86 1.72e-12 63.2
Msa0718570 MtrunA17_Chr1g0208301 39.394 66 40 0 22 87 12 77 1.86e-12 63.2
Msa0718570 MtrunA17_Chr4g0065621 39.394 66 40 0 22 87 9 74 3.58e-12 62.4
Msa0718570 MtrunA17_Chr1g0198341 41.538 65 38 0 23 87 4 68 3.88e-12 58.2
Msa0718570 MtrunA17_Chr4g0050451 35.294 85 52 2 22 106 1 82 1.03e-11 57.4
Msa0718570 MtrunA17_Chr2g0296001 39.474 76 44 1 15 88 63 138 4.20e-11 59.3
Msa0718570 MtrunA17_Chr1g0192131 35.526 76 48 1 14 88 6 81 5.81e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718570 AT1G22990.1 55.263 152 61 2 1 145 1 152 1.30e-57 176
Msa0718570 AT1G22990.2 52.632 152 60 3 1 145 1 147 1.01e-52 164
Msa0718570 AT1G71050.1 53.947 152 63 3 1 145 1 152 2.56e-52 163
Msa0718570 AT5G17450.1 54.362 149 64 2 1 145 1 149 4.63e-50 157
Msa0718570 AT4G39700.1 50.318 157 62 4 2 145 5 158 1.52e-42 138
Msa0718570 AT4G38580.1 47.059 153 73 3 1 145 1 153 2.05e-41 135
Msa0718570 AT4G38580.2 47.059 153 73 3 1 145 1 153 2.05e-41 135
Msa0718570 AT5G66110.3 54.412 136 54 3 17 145 13 147 8.80e-41 134
Msa0718570 AT5G66110.1 54.412 136 54 3 17 145 13 147 8.80e-41 134
Msa0718570 AT4G35060.1 41.830 153 81 3 1 145 1 153 1.43e-40 133
Msa0718570 AT4G08570.1 45.205 146 78 2 2 145 5 150 1.02e-38 128
Msa0718570 AT5G66110.2 52.459 122 50 3 31 145 1 121 2.88e-35 119
Msa0718570 AT5G17450.2 50.505 99 48 1 48 145 7 105 2.78e-32 110
Msa0718570 AT2G18196.1 37.419 155 82 4 3 145 27 178 4.76e-28 102
Msa0718570 AT4G10465.1 39.865 148 74 3 10 145 39 183 2.34e-27 100
Msa0718570 AT1G06330.1 37.013 154 63 3 22 145 1 150 5.45e-24 91.3
Msa0718570 AT2G18196.2 39.370 127 63 3 31 145 1 125 3.48e-23 88.2
Msa0718570 AT3G56891.1 32.468 154 72 5 22 145 15 166 1.75e-21 85.1
Msa0718570 AT3G56891.2 32.414 145 66 5 31 145 1 143 1.82e-19 79.3
Msa0718570 AT1G29100.2 30.405 148 71 4 25 145 5 147 1.33e-15 69.3
Msa0718570 AT3G48970.2 38.686 137 69 6 24 145 2 138 2.47e-14 65.9
Msa0718570 AT3G48970.3 38.686 137 69 6 24 145 2 138 2.47e-14 65.9
Msa0718570 AT3G48970.1 39.130 138 67 7 24 145 4 140 2.50e-14 65.9
Msa0718570 AT1G29100.1 29.452 146 71 4 27 145 1 141 3.00e-14 65.9
Msa0718570 AT1G66240.1 44.615 65 36 0 23 87 33 97 7.40e-13 61.2
Msa0718570 AT3G56240.3 42.424 66 38 0 23 88 3 68 5.91e-12 59.3
Msa0718570 AT3G56240.1 42.424 66 38 0 23 88 3 68 5.91e-12 59.3
Msa0718570 AT3G06130.1 37.879 66 41 0 22 87 9 74 1.04e-11 61.6
Msa0718570 AT3G06130.2 36.111 72 46 0 22 93 9 80 1.52e-11 61.2
Msa0718570 AT5G19090.5 37.879 66 41 0 22 87 9 74 2.83e-11 60.5
Msa0718570 AT5G19090.4 37.879 66 41 0 22 87 9 74 2.83e-11 60.5
Msa0718570 AT5G19090.1 37.879 66 41 0 22 87 9 74 2.83e-11 60.5
Msa0718570 AT5G19090.2 37.879 66 41 0 22 87 9 74 3.00e-11 60.5
Msa0718570 AT5G19090.3 37.879 66 41 0 22 87 9 74 3.00e-11 60.5
Msa0718570 AT5G27690.1 32.258 62 42 0 27 88 34 95 8.29e-11 58.9

Find 43 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGACTTTGAAGCTATTT+TGG 0.136582 5_1:-12812083 Msa0718570:three_prime_UTR
CCTTATAAAAGTATATAATT+TGG 0.194791 5_1:-12813548 Msa0718570:five_prime_UTR
AAGAACAAGAATTAAGAAAA+TGG 0.213886 5_1:-12813413 Msa0718570:exon
ATCTTATCATCTGTTCCATT+TGG 0.247141 5_1:+12812222 None:intergenic
AGTGGAAATAAAGGTGAAAA+TGG 0.297522 5_1:-12813232 Msa0718570:CDS
CTGTGCTCTGCACCTTCCTT+AGG 0.323100 5_1:+12812370 None:intergenic
TCTTATCATCTGTTCCATTT+GGG 0.328722 5_1:+12812223 None:intergenic
CACATGATTGAACATGCATT+AGG 0.335274 5_1:+12812174 None:intergenic
CTTATAGACAGTGGAAATAA+AGG 0.347942 5_1:-12813241 Msa0718570:intron
TCATCTGTTCCATTTGGGTT+TGG 0.349576 5_1:+12812228 None:intergenic
ACATGATTGAACATGCATTA+GGG 0.359404 5_1:+12812175 None:intergenic
CAAAGCAAGGTAACCGTGAC+TGG 0.363196 5_1:-12812414 Msa0718570:CDS
GGATGTATGGGACAATATTA+TGG 0.386593 5_1:+12813522 None:intergenic
GTGTAAAGAAAGAAATAGAT+TGG 0.390553 5_1:+12813441 None:intergenic
TGGGAATGTGGATAGAAATA+AGG 0.391392 5_1:-12812394 Msa0718570:CDS
GGAATTATGGAATGGAACTA+TGG 0.400788 5_1:+12813570 None:intergenic
TGATGGAAAAGGAGGATGTA+TGG 0.427682 5_1:+12813509 None:intergenic
ACCAAGTTAGCTTCAACATA+TGG 0.451325 5_1:+12812327 None:intergenic
TGTAAAGAAAGAAATAGATT+GGG 0.462344 5_1:+12813442 None:intergenic
GCCATATGTTGAAGCTAACT+TGG 0.464839 5_1:-12812328 Msa0718570:CDS
AGAACAAGAATTAAGAAAAT+GGG 0.465426 5_1:-12813412 Msa0718570:exon
AGCTTGTGAAATACCTGCAT+TGG 0.470539 5_1:+12813334 None:intergenic
TGCATATGCCTGTGTTATGT+AGG 0.478193 5_1:+12812296 None:intergenic
AATTCTGTTACTAACATGTC+AGG 0.503481 5_1:-12813180 Msa0718570:intron
CTAAGGAAGGTGCAGAGCAC+AGG 0.508118 5_1:-12812369 Msa0718570:CDS
TTTATAAGGGAATTATGGAA+TGG 0.522983 5_1:+12813562 None:intergenic
AGGGTTATCATCACTGAAGA+AGG 0.527497 5_1:+12812194 None:intergenic
TGGATAGAAATAAGGTCCTA+AGG 0.531057 5_1:-12812386 Msa0718570:CDS
TTAGCAATACCAAACCCAAA+TGG 0.531163 5_1:-12812237 Msa0718570:CDS
GCATATGCCTGTGTTATGTA+GGG 0.531267 5_1:+12812297 None:intergenic
GATGGAAAAGGAGGATGTAT+GGG 0.536168 5_1:+12813510 None:intergenic
GGTAACCGTGACTGGGAATG+TGG 0.560905 5_1:-12812406 Msa0718570:CDS
AAAGAAACACAAACCAATGC+AGG 0.567644 5_1:-12813347 Msa0718570:intron
ATATGATAATGTAGGTGTGA+AGG 0.572793 5_1:-12812457 Msa0718570:intron
TAGAAATAAGGTCCTAAGGA+AGG 0.572839 5_1:-12812382 Msa0718570:CDS
TCTATCCACATTCCCAGTCA+CGG 0.577046 5_1:+12812401 None:intergenic
ATATGTTGAAGCTAACTTGG+TGG 0.579782 5_1:-12812325 Msa0718570:CDS
ATGGCTGTGAAAGAAGAGTT+CGG 0.593996 5_1:-12813203 Msa0718570:CDS
AAAGCAAGGTAACCGTGACT+GGG 0.604590 5_1:-12812413 Msa0718570:CDS
TGACAGTGAAGTAATCTGAA+AGG 0.632257 5_1:+12813377 None:intergenic
TGTGAATAGAGAGCAAAGCA+AGG 0.638066 5_1:-12812427 Msa0718570:CDS
GGCATATCCCTACATAACAC+AGG 0.656872 5_1:-12812304 Msa0718570:CDS
AAGGTGAAAATGGACTGTGA+TGG 0.710877 5_1:-12813222 Msa0718570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTATATACTTTTATAA+GGG + chr5_1:12812024-12812043 None:intergenic 10.0%
!!! CAAATTATATACTTTTATAA+GGG + chr5_1:12812024-12812043 None:intergenic 10.0%
!!! CCAAATTATATACTTTTATA+AGG + chr5_1:12812025-12812044 None:intergenic 15.0%
!!! CCTTATAAAAGTATATAATT+TGG - chr5_1:12812022-12812041 Msa0718570:three_prime_UTR 15.0%
!! TTAGTACTTAAAAAGAAAAA+GGG + chr5_1:12812108-12812127 None:intergenic 15.0%
!!! CCAAATTATATACTTTTATA+AGG + chr5_1:12812025-12812044 None:intergenic 15.0%
!!! CCTTATAAAAGTATATAATT+TGG - chr5_1:12812022-12812041 Msa0718570:three_prime_UTR 15.0%
!! TTAGTACTTAAAAAGAAAAA+GGG + chr5_1:12812108-12812127 None:intergenic 15.0%
!!! ATACTTTTATAAGGGAATTA+TGG + chr5_1:12812016-12812035 None:intergenic 20.0%
!! TAGTACTTAAAAAGAAAAAG+GGG + chr5_1:12812107-12812126 None:intergenic 20.0%
!! GTTAGTACTTAAAAAGAAAA+AGG + chr5_1:12812109-12812128 None:intergenic 20.0%
!! TGTAAAGAAAGAAATAGATT+GGG + chr5_1:12812131-12812150 None:intergenic 20.0%
!! AAGAACAAGAATTAAGAAAA+TGG - chr5_1:12812157-12812176 Msa0718570:exon 20.0%
!! AGAACAAGAATTAAGAAAAT+GGG - chr5_1:12812158-12812177 Msa0718570:exon 20.0%
!!! TTACAACAATATGATAATGT+AGG - chr5_1:12813105-12813124 Msa0718570:intron 20.0%
!!! TAATCAAGTTCTGTTTTTAT+GGG - chr5_1:12813549-12813568 Msa0718570:five_prime_UTR 20.0%
!!! ATACTTTTATAAGGGAATTA+TGG + chr5_1:12812016-12812035 None:intergenic 20.0%
!! TAGTACTTAAAAAGAAAAAG+GGG + chr5_1:12812107-12812126 None:intergenic 20.0%
!! GTTAGTACTTAAAAAGAAAA+AGG + chr5_1:12812109-12812128 None:intergenic 20.0%
!! TGTAAAGAAAGAAATAGATT+GGG + chr5_1:12812131-12812150 None:intergenic 20.0%
!! AAGAACAAGAATTAAGAAAA+TGG - chr5_1:12812157-12812176 Msa0718570:exon 20.0%
!! AGAACAAGAATTAAGAAAAT+GGG - chr5_1:12812158-12812177 Msa0718570:exon 20.0%
!!! TTACAACAATATGATAATGT+AGG - chr5_1:12813105-12813124 Msa0718570:intron 20.0%
!!! TAATCAAGTTCTGTTTTTAT+GGG - chr5_1:12813549-12813568 Msa0718570:five_prime_UTR 20.0%
! TTTATAAGGGAATTATGGAA+TGG + chr5_1:12812011-12812030 None:intergenic 25.0%
! GTGTAAAGAAAGAAATAGAT+TGG + chr5_1:12812132-12812151 None:intergenic 25.0%
!!! TTGGTTTGTGTTTCTTTTTT+GGG + chr5_1:12812220-12812239 None:intergenic 25.0%
!!! ATTGGTTTGTGTTTCTTTTT+TGG + chr5_1:12812221-12812240 None:intergenic 25.0%
! ATAAATGAGATAGGATACAT+AGG + chr5_1:12812262-12812281 None:intergenic 25.0%
! TACATGTACATAAATGAGAT+AGG + chr5_1:12812271-12812290 None:intergenic 25.0%
! TCTTCTTATCTCAAATCAAA+TGG - chr5_1:12812443-12812462 Msa0718570:CDS 25.0%
!! AATCAAATGGCATGATTTTT+AGG - chr5_1:12812456-12812475 Msa0718570:intron 25.0%
! AATGTTCATATTCTCAATGA+AGG - chr5_1:12812495-12812514 Msa0718570:intron 25.0%
!!! TTTCAAGTGGTTTTTAAGTA+CGG + chr5_1:12812547-12812566 None:intergenic 25.0%
!! ATTTCTAAGGGCAAATTATA+GGG + chr5_1:12812861-12812880 None:intergenic 25.0%
!! AATTTCTAAGGGCAAATTAT+AGG + chr5_1:12812862-12812881 None:intergenic 25.0%
! TCATATCTTCATTGATAAGT+GGG - chr5_1:12812895-12812914 Msa0718570:intron 25.0%
!! TGTTTTCTTTATAGCCAAAT+TGG - chr5_1:12813040-12813059 Msa0718570:intron 25.0%
!! TTTTGTTAGAACAACCAATT+TGG + chr5_1:12813057-12813076 None:intergenic 25.0%
!!! TTAAGACTTTGAAGCTATTT+TGG - chr5_1:12813487-12813506 Msa0718570:five_prime_UTR 25.0%
!!! GTAATCAAGTTCTGTTTTTA+TGG - chr5_1:12813548-12813567 Msa0718570:five_prime_UTR 25.0%
! TTTATAAGGGAATTATGGAA+TGG + chr5_1:12812011-12812030 None:intergenic 25.0%
! GTGTAAAGAAAGAAATAGAT+TGG + chr5_1:12812132-12812151 None:intergenic 25.0%
!!! TTGGTTTGTGTTTCTTTTTT+GGG + chr5_1:12812220-12812239 None:intergenic 25.0%
!!! ATTGGTTTGTGTTTCTTTTT+TGG + chr5_1:12812221-12812240 None:intergenic 25.0%
! ATAAATGAGATAGGATACAT+AGG + chr5_1:12812262-12812281 None:intergenic 25.0%
! TACATGTACATAAATGAGAT+AGG + chr5_1:12812271-12812290 None:intergenic 25.0%
! TCTTCTTATCTCAAATCAAA+TGG - chr5_1:12812443-12812462 Msa0718570:CDS 25.0%
!! AATCAAATGGCATGATTTTT+AGG - chr5_1:12812456-12812475 Msa0718570:intron 25.0%
! AATGTTCATATTCTCAATGA+AGG - chr5_1:12812495-12812514 Msa0718570:intron 25.0%
!!! TTTCAAGTGGTTTTTAAGTA+CGG + chr5_1:12812547-12812566 None:intergenic 25.0%
!! ATTTCTAAGGGCAAATTATA+GGG + chr5_1:12812861-12812880 None:intergenic 25.0%
!! AATTTCTAAGGGCAAATTAT+AGG + chr5_1:12812862-12812881 None:intergenic 25.0%
! TCATATCTTCATTGATAAGT+GGG - chr5_1:12812895-12812914 Msa0718570:intron 25.0%
!! TGTTTTCTTTATAGCCAAAT+TGG - chr5_1:12813040-12813059 Msa0718570:intron 25.0%
!! TTTTGTTAGAACAACCAATT+TGG + chr5_1:12813057-12813076 None:intergenic 25.0%
!!! TTAAGACTTTGAAGCTATTT+TGG - chr5_1:12813487-12813506 Msa0718570:five_prime_UTR 25.0%
!!! GTAATCAAGTTCTGTTTTTA+TGG - chr5_1:12813548-12813567 Msa0718570:five_prime_UTR 25.0%
! AACAAAAATGATGGAAAAGG+AGG + chr5_1:12812072-12812091 None:intergenic 30.0%
! GGAAACAAAAATGATGGAAA+AGG + chr5_1:12812075-12812094 None:intergenic 30.0%
AACAGTGGAAACAAAAATGA+TGG + chr5_1:12812081-12812100 None:intergenic 30.0%
!!! TGGTTTGTGTTTCTTTTTTG+GGG + chr5_1:12812219-12812238 None:intergenic 30.0%
!!! CTTTTTTCTCTTATAGACAG+TGG - chr5_1:12812320-12812339 Msa0718570:CDS 30.0%
CTTATAGACAGTGGAAATAA+AGG - chr5_1:12812329-12812348 Msa0718570:CDS 30.0%
AGTGGAAATAAAGGTGAAAA+TGG - chr5_1:12812338-12812357 Msa0718570:CDS 30.0%
AATTCTGTTACTAACATGTC+AGG - chr5_1:12812390-12812409 Msa0718570:CDS 30.0%
TTCATATTCTCAATGAAGGT+GGG - chr5_1:12812499-12812518 Msa0718570:intron 30.0%
! GGTGGGTTCTATAATTTATA+CGG - chr5_1:12812516-12812535 Msa0718570:intron 30.0%
ATAGAGTTTCAACTTTCAAG+TGG + chr5_1:12812560-12812579 None:intergenic 30.0%
GTGTTAGTTCAACAAAAACA+AGG - chr5_1:12812634-12812653 Msa0718570:intron 30.0%
!! CGAATATGAGTTGAGTTTTA+AGG - chr5_1:12812663-12812682 Msa0718570:intron 30.0%
CTATTTGTAAGTAGAAACTC+CGG + chr5_1:12812761-12812780 None:intergenic 30.0%
TTGATATTTCGAACGATTCT+CGG - chr5_1:12812795-12812814 Msa0718570:intron 30.0%
CTCATATCTTCATTGATAAG+TGG - chr5_1:12812894-12812913 Msa0718570:intron 30.0%
! ATATGATAATGTAGGTGTGA+AGG - chr5_1:12813113-12813132 Msa0718570:intron 30.0%
TCTTATCATCTGTTCCATTT+GGG + chr5_1:12813350-12813369 None:intergenic 30.0%
ATCTTATCATCTGTTCCATT+TGG + chr5_1:12813351-12813370 None:intergenic 30.0%
ACATGATTGAACATGCATTA+GGG + chr5_1:12813398-12813417 None:intergenic 30.0%
! AACAAAAATGATGGAAAAGG+AGG + chr5_1:12812072-12812091 None:intergenic 30.0%
! GGAAACAAAAATGATGGAAA+AGG + chr5_1:12812075-12812094 None:intergenic 30.0%
AACAGTGGAAACAAAAATGA+TGG + chr5_1:12812081-12812100 None:intergenic 30.0%
!!! TGGTTTGTGTTTCTTTTTTG+GGG + chr5_1:12812219-12812238 None:intergenic 30.0%
!!! CTTTTTTCTCTTATAGACAG+TGG - chr5_1:12812320-12812339 Msa0718570:CDS 30.0%
CTTATAGACAGTGGAAATAA+AGG - chr5_1:12812329-12812348 Msa0718570:CDS 30.0%
AGTGGAAATAAAGGTGAAAA+TGG - chr5_1:12812338-12812357 Msa0718570:CDS 30.0%
AATTCTGTTACTAACATGTC+AGG - chr5_1:12812390-12812409 Msa0718570:CDS 30.0%
TTCATATTCTCAATGAAGGT+GGG - chr5_1:12812499-12812518 Msa0718570:intron 30.0%
! GGTGGGTTCTATAATTTATA+CGG - chr5_1:12812516-12812535 Msa0718570:intron 30.0%
ATAGAGTTTCAACTTTCAAG+TGG + chr5_1:12812560-12812579 None:intergenic 30.0%
GTGTTAGTTCAACAAAAACA+AGG - chr5_1:12812634-12812653 Msa0718570:intron 30.0%
!! CGAATATGAGTTGAGTTTTA+AGG - chr5_1:12812663-12812682 Msa0718570:intron 30.0%
CTATTTGTAAGTAGAAACTC+CGG + chr5_1:12812761-12812780 None:intergenic 30.0%
TTGATATTTCGAACGATTCT+CGG - chr5_1:12812795-12812814 Msa0718570:intron 30.0%
CTCATATCTTCATTGATAAG+TGG - chr5_1:12812894-12812913 Msa0718570:intron 30.0%
! ATATGATAATGTAGGTGTGA+AGG - chr5_1:12813113-12813132 Msa0718570:intron 30.0%
TCTTATCATCTGTTCCATTT+GGG + chr5_1:12813350-12813369 None:intergenic 30.0%
ATCTTATCATCTGTTCCATT+TGG + chr5_1:12813351-12813370 None:intergenic 30.0%
ACATGATTGAACATGCATTA+GGG + chr5_1:12813398-12813417 None:intergenic 30.0%
GGAATTATGGAATGGAACTA+TGG + chr5_1:12812003-12812022 None:intergenic 35.0%
GGATGTATGGGACAATATTA+TGG + chr5_1:12812051-12812070 None:intergenic 35.0%
TGACAGTGAAGTAATCTGAA+AGG + chr5_1:12812196-12812215 None:intergenic 35.0%
AAAGAAACACAAACCAATGC+AGG - chr5_1:12812223-12812242 Msa0718570:CDS 35.0%
GTTCATATTCTCAATGAAGG+TGG - chr5_1:12812498-12812517 Msa0718570:intron 35.0%
! TTAACCAGATTTTTGTGGCT+GGG + chr5_1:12812738-12812757 None:intergenic 35.0%
TGATATTTCGAACGATTCTC+GGG - chr5_1:12812796-12812815 Msa0718570:intron 35.0%
TGGGAATGTGGATAGAAATA+AGG - chr5_1:12813176-12813195 Msa0718570:intron 35.0%
TGGATAGAAATAAGGTCCTA+AGG - chr5_1:12813184-12813203 Msa0718570:CDS 35.0%
TAGAAATAAGGTCCTAAGGA+AGG - chr5_1:12813188-12813207 Msa0718570:CDS 35.0%
! CAGGAAAAAGAGCAAAGTTT+TGG - chr5_1:12813220-12813239 Msa0718570:CDS 35.0%
! ACCAAGTTAGCTTCAACATA+TGG + chr5_1:12813246-12813265 None:intergenic 35.0%
ATATGTTGAAGCTAACTTGG+TGG - chr5_1:12813245-12813264 Msa0718570:intron 35.0%
TATGCAAAAAATGCACCTTC+TGG - chr5_1:12813291-12813310 Msa0718570:intron 35.0%
! GTGTTTTTCACATATCCAGA+AGG + chr5_1:12813309-12813328 None:intergenic 35.0%
TTAGCAATACCAAACCCAAA+TGG - chr5_1:12813333-12813352 Msa0718570:intron 35.0%
CACATGATTGAACATGCATT+AGG + chr5_1:12813399-12813418 None:intergenic 35.0%
GGAATTATGGAATGGAACTA+TGG + chr5_1:12812003-12812022 None:intergenic 35.0%
GGATGTATGGGACAATATTA+TGG + chr5_1:12812051-12812070 None:intergenic 35.0%
TGACAGTGAAGTAATCTGAA+AGG + chr5_1:12812196-12812215 None:intergenic 35.0%
AAAGAAACACAAACCAATGC+AGG - chr5_1:12812223-12812242 Msa0718570:CDS 35.0%
GTTCATATTCTCAATGAAGG+TGG - chr5_1:12812498-12812517 Msa0718570:intron 35.0%
! TTAACCAGATTTTTGTGGCT+GGG + chr5_1:12812738-12812757 None:intergenic 35.0%
TGATATTTCGAACGATTCTC+GGG - chr5_1:12812796-12812815 Msa0718570:intron 35.0%
TGGGAATGTGGATAGAAATA+AGG - chr5_1:12813176-12813195 Msa0718570:intron 35.0%
TGGATAGAAATAAGGTCCTA+AGG - chr5_1:12813184-12813203 Msa0718570:CDS 35.0%
TAGAAATAAGGTCCTAAGGA+AGG - chr5_1:12813188-12813207 Msa0718570:CDS 35.0%
! CAGGAAAAAGAGCAAAGTTT+TGG - chr5_1:12813220-12813239 Msa0718570:CDS 35.0%
! ACCAAGTTAGCTTCAACATA+TGG + chr5_1:12813246-12813265 None:intergenic 35.0%
ATATGTTGAAGCTAACTTGG+TGG - chr5_1:12813245-12813264 Msa0718570:intron 35.0%
TATGCAAAAAATGCACCTTC+TGG - chr5_1:12813291-12813310 Msa0718570:intron 35.0%
! GTGTTTTTCACATATCCAGA+AGG + chr5_1:12813309-12813328 None:intergenic 35.0%
TTAGCAATACCAAACCCAAA+TGG - chr5_1:12813333-12813352 Msa0718570:intron 35.0%
CACATGATTGAACATGCATT+AGG + chr5_1:12813399-12813418 None:intergenic 35.0%
GATGGAAAAGGAGGATGTAT+GGG + chr5_1:12812063-12812082 None:intergenic 40.0%
TGATGGAAAAGGAGGATGTA+TGG + chr5_1:12812064-12812083 None:intergenic 40.0%
AAGAAAAAGGGGTTGAACAG+TGG + chr5_1:12812096-12812115 None:intergenic 40.0%
AGCTTGTGAAATACCTGCAT+TGG + chr5_1:12812239-12812258 None:intergenic 40.0%
!! AAGGTGAAAATGGACTGTGA+TGG - chr5_1:12812348-12812367 Msa0718570:CDS 40.0%
ATGGCTGTGAAAGAAGAGTT+CGG - chr5_1:12812367-12812386 Msa0718570:CDS 40.0%
ACGTTGAAGATTGTGAACGT+TGG + chr5_1:12812586-12812605 None:intergenic 40.0%
CGACTCAAGACCAATTATCA+CGG - chr5_1:12812711-12812730 Msa0718570:intron 40.0%
! GTTAACCAGATTTTTGTGGC+TGG + chr5_1:12812739-12812758 None:intergenic 40.0%
GCCACAAAAATCTGGTTAAC+CGG - chr5_1:12812739-12812758 Msa0718570:intron 40.0%
! TCCGGTTAACCAGATTTTTG+TGG + chr5_1:12812743-12812762 None:intergenic 40.0%
ATAGGGTGAACTGCTTTGAT+AGG + chr5_1:12812844-12812863 None:intergenic 40.0%
TGTGAATAGAGAGCAAAGCA+AGG - chr5_1:12813143-12813162 Msa0718570:intron 40.0%
GCCATATGTTGAAGCTAACT+TGG - chr5_1:12813242-12813261 Msa0718570:intron 40.0%
GCATATGCCTGTGTTATGTA+GGG + chr5_1:12813276-12813295 None:intergenic 40.0%
TGCATATGCCTGTGTTATGT+AGG + chr5_1:12813277-12813296 None:intergenic 40.0%
! TCATCTGTTCCATTTGGGTT+TGG + chr5_1:12813345-12813364 None:intergenic 40.0%
AGGGTTATCATCACTGAAGA+AGG + chr5_1:12813379-12813398 None:intergenic 40.0%
GATGGAAAAGGAGGATGTAT+GGG + chr5_1:12812063-12812082 None:intergenic 40.0%
TGATGGAAAAGGAGGATGTA+TGG + chr5_1:12812064-12812083 None:intergenic 40.0%
AAGAAAAAGGGGTTGAACAG+TGG + chr5_1:12812096-12812115 None:intergenic 40.0%
AGCTTGTGAAATACCTGCAT+TGG + chr5_1:12812239-12812258 None:intergenic 40.0%
!! AAGGTGAAAATGGACTGTGA+TGG - chr5_1:12812348-12812367 Msa0718570:CDS 40.0%
ATGGCTGTGAAAGAAGAGTT+CGG - chr5_1:12812367-12812386 Msa0718570:CDS 40.0%
ACGTTGAAGATTGTGAACGT+TGG + chr5_1:12812586-12812605 None:intergenic 40.0%
CGACTCAAGACCAATTATCA+CGG - chr5_1:12812711-12812730 Msa0718570:intron 40.0%
! GTTAACCAGATTTTTGTGGC+TGG + chr5_1:12812739-12812758 None:intergenic 40.0%
GCCACAAAAATCTGGTTAAC+CGG - chr5_1:12812739-12812758 Msa0718570:intron 40.0%
! TCCGGTTAACCAGATTTTTG+TGG + chr5_1:12812743-12812762 None:intergenic 40.0%
ATAGGGTGAACTGCTTTGAT+AGG + chr5_1:12812844-12812863 None:intergenic 40.0%
TGTGAATAGAGAGCAAAGCA+AGG - chr5_1:12813143-12813162 Msa0718570:intron 40.0%
GCCATATGTTGAAGCTAACT+TGG - chr5_1:12813242-12813261 Msa0718570:intron 40.0%
GCATATGCCTGTGTTATGTA+GGG + chr5_1:12813276-12813295 None:intergenic 40.0%
TGCATATGCCTGTGTTATGT+AGG + chr5_1:12813277-12813296 None:intergenic 40.0%
! TCATCTGTTCCATTTGGGTT+TGG + chr5_1:12813345-12813364 None:intergenic 40.0%
AGGGTTATCATCACTGAAGA+AGG + chr5_1:12813379-12813398 None:intergenic 40.0%
TCGGGTATCTAGGTTCATGA+TGG - chr5_1:12812814-12812833 Msa0718570:intron 45.0%
AAAGCAAGGTAACCGTGACT+GGG - chr5_1:12813157-12813176 Msa0718570:intron 45.0%
TCTATCCACATTCCCAGTCA+CGG + chr5_1:12813172-12813191 None:intergenic 45.0%
GGCATATCCCTACATAACAC+AGG - chr5_1:12813266-12813285 Msa0718570:intron 45.0%
TCGGGTATCTAGGTTCATGA+TGG - chr5_1:12812814-12812833 Msa0718570:intron 45.0%
AAAGCAAGGTAACCGTGACT+GGG - chr5_1:12813157-12813176 Msa0718570:intron 45.0%
TCTATCCACATTCCCAGTCA+CGG + chr5_1:12813172-12813191 None:intergenic 45.0%
GGCATATCCCTACATAACAC+AGG - chr5_1:12813266-12813285 Msa0718570:intron 45.0%
!! TATATAAAAAAAATTTCTAA+GGG + chr5_1:12812873-12812892 None:intergenic 5.0%
!! TTATATAAAAAAAATTTCTA+AGG + chr5_1:12812874-12812893 None:intergenic 5.0%
!! TATATAAAAAAAATTTCTAA+GGG + chr5_1:12812873-12812892 None:intergenic 5.0%
!! TTATATAAAAAAAATTTCTA+AGG + chr5_1:12812874-12812893 None:intergenic 5.0%
CGAACGATTCTCGGGTATCT+AGG - chr5_1:12812804-12812823 Msa0718570:intron 50.0%
GGGTGAACTGCTTTGATAGG+CGG + chr5_1:12812841-12812860 None:intergenic 50.0%
CAAAGCAAGGTAACCGTGAC+TGG - chr5_1:12813156-12813175 Msa0718570:intron 50.0%
CGAACGATTCTCGGGTATCT+AGG - chr5_1:12812804-12812823 Msa0718570:intron 50.0%
GGGTGAACTGCTTTGATAGG+CGG + chr5_1:12812841-12812860 None:intergenic 50.0%
CAAAGCAAGGTAACCGTGAC+TGG - chr5_1:12813156-12813175 Msa0718570:intron 50.0%
GTGGCTGGGACCGTGATAAT+TGG + chr5_1:12812724-12812743 None:intergenic 55.0%
CGGTCCCAGCCACAAAAATC+TGG - chr5_1:12812731-12812750 Msa0718570:intron 55.0%
GGTAACCGTGACTGGGAATG+TGG - chr5_1:12813164-12813183 Msa0718570:intron 55.0%
CTGTGCTCTGCACCTTCCTT+AGG + chr5_1:12813203-12813222 None:intergenic 55.0%
! CTAAGGAAGGTGCAGAGCAC+AGG - chr5_1:12813201-12813220 Msa0718570:CDS 55.0%
GTGGCTGGGACCGTGATAAT+TGG + chr5_1:12812724-12812743 None:intergenic 55.0%
CGGTCCCAGCCACAAAAATC+TGG - chr5_1:12812731-12812750 Msa0718570:intron 55.0%
GGTAACCGTGACTGGGAATG+TGG - chr5_1:12813164-12813183 Msa0718570:intron 55.0%
CTGTGCTCTGCACCTTCCTT+AGG + chr5_1:12813203-12813222 None:intergenic 55.0%
! CTAAGGAAGGTGCAGAGCAC+AGG - chr5_1:12813201-12813220 Msa0718570:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 12811991 12813601 12811991 ID=Msa0718570;Name=Msa0718570
chr5_1 mRNA 12811991 12813601 12811991 ID=Msa0718570-mRNA-1;Parent=Msa0718570;Name=Msa0718570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=185|1|1|1|1|1|3|182|145
chr5_1 exon 12811991 12812465 12811991 ID=Msa0718570-mRNA-1:exon:5277;Parent=Msa0718570-mRNA-1
chr5_1 exon 12813181 12813256 12813181 ID=Msa0718570-mRNA-1:exon:5276;Parent=Msa0718570-mRNA-1
chr5_1 exon 12813348 12813601 12813348 ID=Msa0718570-mRNA-1:exon:5275;Parent=Msa0718570-mRNA-1
chr5_1 five_prime_UTR 12813417 12813601 12813417 ID=Msa0718570-mRNA-1:five_prime_utr;Parent=Msa0718570-mRNA-1
chr5_1 CDS 12813348 12813416 12813348 ID=Msa0718570-mRNA-1:cds;Parent=Msa0718570-mRNA-1
chr5_1 CDS 12813181 12813256 12813181 ID=Msa0718570-mRNA-1:cds;Parent=Msa0718570-mRNA-1
chr5_1 CDS 12812173 12812465 12812173 ID=Msa0718570-mRNA-1:cds;Parent=Msa0718570-mRNA-1
chr5_1 three_prime_UTR 12811991 12812172 12811991 ID=Msa0718570-mRNA-1:three_prime_utr;Parent=Msa0718570-mRNA-1
Gene Sequence

>Msa0718570

ATGGGTGCTCTAGATTTCCTTTCAGATTACTTCACTGTCACCCCAAAAAAGAAACACAAACCAATGCAGACAGTGGAAATAAAGGTGAAAATGGACTGTGATGGCTGTGAAAGAAGAGTTCGGAATTCTGTTACTAACATGTCAGGTGTGAAGGAAGTAGATGTGAATAGAGAGCAAAGCAAGGTAACCGTGACTGGGAATGTGGATAGAAATAAGGTCCTAAGGAAGGTGCAGAGCACAGGAAAAAGAGCAAAGTTTTGGCCATATGTTGAAGCTAACTTGGTGGCATATCCCTACATAACACAGGCATATGCAAAAAATGCACCTTCTGGATATGTGAAAAACACTGAATTAGCAATACCAAACCCAAATGGAACAGATGATAAGATCACTTCCTTCTTCAGTGATGATAACCCTAATGCATGTTCAATCATGTGA

Protein sequence

>Msa0718570

MGALDFLSDYFTVTPKKKHKPMQTVEIKVKMDCDGCERRVRNSVTNMSGVKEVDVNREQSKVTVTGNVDRNKVLRKVQSTGKRAKFWPYVEANLVAYPYITQAYAKNAPSGYVKNTELAIPNPNGTDDKITSFFSDDNPNACSIM*