AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0759680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759680 MtrunA17_Chr5g0407821 99.310 145 1 0 1 145 1 145 3.44e-107 301
Msa0759680 MtrunA17_Chr1g0160201 72.789 147 38 1 1 145 1 147 1.69e-77 226
Msa0759680 MtrunA17_Chr6g0448861 58.065 155 55 3 1 145 1 155 7.95e-59 179
Msa0759680 MtrunA17_Chr7g0251491 59.864 147 56 3 1 145 25 170 6.28e-57 175
Msa0759680 MtrunA17_Chr3g0124411 50.676 148 69 1 2 145 5 152 1.12e-47 151
Msa0759680 MtrunA17_Chr8g0382721 54.362 149 63 2 2 145 5 153 1.00e-46 148
Msa0759680 MtrunA17_Chr4g0036931 50.641 156 66 3 1 145 1 156 1.39e-46 148
Msa0759680 MtrunA17_Chr3g0145621 47.436 156 71 3 1 145 1 156 2.07e-46 148
Msa0759680 MtrunA17_Chr5g0422891 46.939 147 76 1 1 145 1 147 1.44e-45 145
Msa0759680 MtrunA17_Chr5g0405811 50.314 159 63 4 1 145 1 157 6.71e-44 141
Msa0759680 MtrunA17_Chr3g0115421 47.586 145 75 1 2 145 5 149 2.22e-39 130
Msa0759680 MtrunA17_Chr1g0189221 53.333 75 35 0 15 89 45 119 1.85e-23 90.1
Msa0759680 MtrunA17_Chr2g0325601 32.653 147 71 3 22 145 1 142 5.60e-22 85.5
Msa0759680 MtrunA17_Chr3g0080011 69.231 52 15 1 1 51 25 76 3.68e-18 74.3
Msa0759680 MtrunA17_Chr6g0471231 34.058 138 72 6 25 145 5 140 3.83e-17 72.8
Msa0759680 MtrunA17_Chr1g0191671 39.189 74 45 0 22 95 9 82 2.45e-14 68.9
Msa0759680 MtrunA17_Chr7g0218981 39.560 91 53 1 23 113 4 92 1.49e-13 63.2
Msa0759680 MtrunA17_Chr6g0460361 34.862 109 59 4 48 145 3 110 3.17e-13 62.0
Msa0759680 MtrunA17_Chr2g0287751 39.394 66 40 0 22 87 9 74 1.11e-12 63.9
Msa0759680 MtrunA17_Chr0c22g0493881 39.394 66 40 0 22 87 9 74 1.29e-12 63.9
Msa0759680 MtrunA17_Chr4g0065651 39.394 66 40 0 22 87 9 74 1.40e-12 63.9
Msa0759680 MtrunA17_Chr7g0269081 40.000 65 39 0 23 87 22 86 1.72e-12 63.2
Msa0759680 MtrunA17_Chr1g0208301 39.394 66 40 0 22 87 12 77 1.86e-12 63.2
Msa0759680 MtrunA17_Chr4g0065621 39.394 66 40 0 22 87 9 74 3.58e-12 62.4
Msa0759680 MtrunA17_Chr1g0198341 41.538 65 38 0 23 87 4 68 3.88e-12 58.2
Msa0759680 MtrunA17_Chr4g0050451 35.294 85 52 2 22 106 1 82 1.03e-11 57.4
Msa0759680 MtrunA17_Chr2g0296001 39.474 76 44 1 15 88 63 138 4.20e-11 59.3
Msa0759680 MtrunA17_Chr1g0192131 35.526 76 48 1 14 88 6 81 5.81e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759680 AT1G22990.1 55.263 152 61 2 1 145 1 152 1.30e-57 176
Msa0759680 AT1G22990.2 52.632 152 60 3 1 145 1 147 1.01e-52 164
Msa0759680 AT1G71050.1 53.947 152 63 3 1 145 1 152 2.56e-52 163
Msa0759680 AT5G17450.1 54.362 149 64 2 1 145 1 149 4.63e-50 157
Msa0759680 AT4G39700.1 50.318 157 62 4 2 145 5 158 1.52e-42 138
Msa0759680 AT4G38580.1 47.059 153 73 3 1 145 1 153 2.05e-41 135
Msa0759680 AT4G38580.2 47.059 153 73 3 1 145 1 153 2.05e-41 135
Msa0759680 AT5G66110.3 54.412 136 54 3 17 145 13 147 8.80e-41 134
Msa0759680 AT5G66110.1 54.412 136 54 3 17 145 13 147 8.80e-41 134
Msa0759680 AT4G35060.1 41.830 153 81 3 1 145 1 153 1.43e-40 133
Msa0759680 AT4G08570.1 45.205 146 78 2 2 145 5 150 1.02e-38 128
Msa0759680 AT5G66110.2 52.459 122 50 3 31 145 1 121 2.88e-35 119
Msa0759680 AT5G17450.2 50.505 99 48 1 48 145 7 105 2.78e-32 110
Msa0759680 AT2G18196.1 37.419 155 82 4 3 145 27 178 4.76e-28 102
Msa0759680 AT4G10465.1 39.865 148 74 3 10 145 39 183 2.34e-27 100
Msa0759680 AT1G06330.1 37.013 154 63 3 22 145 1 150 5.45e-24 91.3
Msa0759680 AT2G18196.2 39.370 127 63 3 31 145 1 125 3.48e-23 88.2
Msa0759680 AT3G56891.1 32.468 154 72 5 22 145 15 166 1.75e-21 85.1
Msa0759680 AT3G56891.2 32.414 145 66 5 31 145 1 143 1.82e-19 79.3
Msa0759680 AT1G29100.2 30.405 148 71 4 25 145 5 147 1.33e-15 69.3
Msa0759680 AT3G48970.2 38.686 137 69 6 24 145 2 138 2.47e-14 65.9
Msa0759680 AT3G48970.3 38.686 137 69 6 24 145 2 138 2.47e-14 65.9
Msa0759680 AT3G48970.1 39.130 138 67 7 24 145 4 140 2.50e-14 65.9
Msa0759680 AT1G29100.1 29.452 146 71 4 27 145 1 141 3.00e-14 65.9
Msa0759680 AT1G66240.1 44.615 65 36 0 23 87 33 97 7.40e-13 61.2
Msa0759680 AT3G56240.3 42.424 66 38 0 23 88 3 68 5.91e-12 59.3
Msa0759680 AT3G56240.1 42.424 66 38 0 23 88 3 68 5.91e-12 59.3
Msa0759680 AT3G06130.1 37.879 66 41 0 22 87 9 74 1.04e-11 61.6
Msa0759680 AT3G06130.2 36.111 72 46 0 22 93 9 80 1.52e-11 61.2
Msa0759680 AT5G19090.5 37.879 66 41 0 22 87 9 74 2.83e-11 60.5
Msa0759680 AT5G19090.4 37.879 66 41 0 22 87 9 74 2.83e-11 60.5
Msa0759680 AT5G19090.1 37.879 66 41 0 22 87 9 74 2.83e-11 60.5
Msa0759680 AT5G19090.2 37.879 66 41 0 22 87 9 74 3.00e-11 60.5
Msa0759680 AT5G19090.3 37.879 66 41 0 22 87 9 74 3.00e-11 60.5
Msa0759680 AT5G27690.1 32.258 62 42 0 27 88 34 95 8.29e-11 58.9

Find 43 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGACTTTGAAGCTATTT+TGG 0.136582 5_2:-15432768 Msa0759680:three_prime_UTR
CCTTATAAAAGTATATAATT+TGG 0.194791 5_2:-15434244 Msa0759680:five_prime_UTR
AAGAACAAGAATTAAGAAAA+TGG 0.213886 5_2:-15434109 Msa0759680:exon
ATCTTATCATCTGTTCCATT+TGG 0.247141 5_2:+15432909 None:intergenic
CTTATAGACAGTGGAAATAA+AGG 0.290253 5_2:-15433934 Msa0759680:intron
AGTGGAAATAAAGGTGAAAA+TGG 0.297522 5_2:-15433925 Msa0759680:CDS
CTGTGCTCTGCACCTTCCTT+AGG 0.323100 5_2:+15433057 None:intergenic
TCTTATCATCTGTTCCATTT+GGG 0.328722 5_2:+15432910 None:intergenic
CACATGATTGAACATGCATT+AGG 0.335274 5_2:+15432861 None:intergenic
TCATCTGTTCCATTTGGGTT+TGG 0.349576 5_2:+15432915 None:intergenic
ACATGATTGAACATGCATTA+GGG 0.359404 5_2:+15432862 None:intergenic
CAAAGCAAGGTAACCGTGAC+TGG 0.363196 5_2:-15433101 Msa0759680:CDS
GGATGTATGGGACAATATTA+TGG 0.386593 5_2:+15434218 None:intergenic
GTGTAAAGAAAGAAATAGAT+TGG 0.390553 5_2:+15434137 None:intergenic
TGGGAATGTGGATAGAAATA+AGG 0.391392 5_2:-15433081 Msa0759680:CDS
GGAATTATGGAATGGAACTA+TGG 0.400788 5_2:+15434266 None:intergenic
TGATGGAAAAGGAGGATGTA+TGG 0.427682 5_2:+15434205 None:intergenic
ACCAAGTTAGCTTCAACATA+TGG 0.451325 5_2:+15433014 None:intergenic
TGTAAAGAAAGAAATAGATT+GGG 0.462344 5_2:+15434138 None:intergenic
GCCATATGTTGAAGCTAACT+TGG 0.464839 5_2:-15433015 Msa0759680:CDS
AGAACAAGAATTAAGAAAAT+GGG 0.465426 5_2:-15434108 Msa0759680:exon
AGCTTGTGAAATACCTGCAT+TGG 0.470539 5_2:+15434030 None:intergenic
TGCATATGCCTGTGTTATGT+AGG 0.478193 5_2:+15432983 None:intergenic
AATTCTGTTACTAACATGTC+AGG 0.503481 5_2:-15433873 Msa0759680:intron
CTAAGGAAGGTGCAGAGCAC+AGG 0.508118 5_2:-15433056 Msa0759680:CDS
TTTATAAGGGAATTATGGAA+TGG 0.522983 5_2:+15434258 None:intergenic
AGGGTTATCATCACTGAAGA+AGG 0.527497 5_2:+15432881 None:intergenic
TGGATAGAAATAAGGTCCTA+AGG 0.531057 5_2:-15433073 Msa0759680:CDS
TTAGCAATACCAAACCCAAA+TGG 0.531163 5_2:-15432924 Msa0759680:CDS
GCATATGCCTGTGTTATGTA+GGG 0.531267 5_2:+15432984 None:intergenic
GATGGAAAAGGAGGATGTAT+GGG 0.536168 5_2:+15434206 None:intergenic
GGTAACCGTGACTGGGAATG+TGG 0.560905 5_2:-15433093 Msa0759680:CDS
AAAGAAACACAAACCAATGC+AGG 0.567644 5_2:-15434043 Msa0759680:intron
ATATGATAATGTAGGTGTGA+AGG 0.572793 5_2:-15433144 Msa0759680:intron
TAGAAATAAGGTCCTAAGGA+AGG 0.572839 5_2:-15433069 Msa0759680:CDS
TCTATCCACATTCCCAGTCA+CGG 0.577046 5_2:+15433088 None:intergenic
ATATGTTGAAGCTAACTTGG+TGG 0.579782 5_2:-15433012 Msa0759680:CDS
ATGGCTGTGAAAGAAGAGTT+CGG 0.593996 5_2:-15433896 Msa0759680:CDS
AAAGCAAGGTAACCGTGACT+GGG 0.604590 5_2:-15433100 Msa0759680:CDS
TGACAGTGAAGTAATCTGAA+AGG 0.632257 5_2:+15434073 None:intergenic
TGTGAATAGAGAGCAAAGCA+AGG 0.638066 5_2:-15433114 Msa0759680:CDS
GGCATATCCCTACATAACAC+AGG 0.656872 5_2:-15432991 Msa0759680:CDS
AAGGTGAAAATGGACTGTGA+TGG 0.710877 5_2:-15433915 Msa0759680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTATATACTTTTATAA+GGG + chr5_2:15432709-15432728 None:intergenic 10.0%
!!! CAAATTATATACTTTTATAA+GGG + chr5_2:15432709-15432728 None:intergenic 10.0%
!!! CCAAATTATATACTTTTATA+AGG + chr5_2:15432710-15432729 None:intergenic 15.0%
!!! CCTTATAAAAGTATATAATT+TGG - chr5_2:15432707-15432726 Msa0759680:three_prime_UTR 15.0%
!! TTAGTACTTAAAAAGAAAAA+GGG + chr5_2:15432793-15432812 None:intergenic 15.0%
!!! CCAAATTATATACTTTTATA+AGG + chr5_2:15432710-15432729 None:intergenic 15.0%
!!! CCTTATAAAAGTATATAATT+TGG - chr5_2:15432707-15432726 Msa0759680:three_prime_UTR 15.0%
!! TTAGTACTTAAAAAGAAAAA+GGG + chr5_2:15432793-15432812 None:intergenic 15.0%
!!! ATACTTTTATAAGGGAATTA+TGG + chr5_2:15432701-15432720 None:intergenic 20.0%
!! TAGTACTTAAAAAGAAAAAG+GGG + chr5_2:15432792-15432811 None:intergenic 20.0%
!! GTTAGTACTTAAAAAGAAAA+AGG + chr5_2:15432794-15432813 None:intergenic 20.0%
!! TGTAAAGAAAGAAATAGATT+GGG + chr5_2:15432816-15432835 None:intergenic 20.0%
!! AAGAACAAGAATTAAGAAAA+TGG - chr5_2:15432842-15432861 Msa0759680:exon 20.0%
!! AGAACAAGAATTAAGAAAAT+GGG - chr5_2:15432843-15432862 Msa0759680:exon 20.0%
!!! TTACAACAATATGATAATGT+AGG - chr5_2:15433799-15433818 Msa0759680:intron 20.0%
!!! TAATCAAGTTCTGTTTTTAT+GGG - chr5_2:15434245-15434264 Msa0759680:five_prime_UTR 20.0%
!!! ATACTTTTATAAGGGAATTA+TGG + chr5_2:15432701-15432720 None:intergenic 20.0%
!! TAGTACTTAAAAAGAAAAAG+GGG + chr5_2:15432792-15432811 None:intergenic 20.0%
!! GTTAGTACTTAAAAAGAAAA+AGG + chr5_2:15432794-15432813 None:intergenic 20.0%
!! TGTAAAGAAAGAAATAGATT+GGG + chr5_2:15432816-15432835 None:intergenic 20.0%
!! AAGAACAAGAATTAAGAAAA+TGG - chr5_2:15432842-15432861 Msa0759680:exon 20.0%
!! AGAACAAGAATTAAGAAAAT+GGG - chr5_2:15432843-15432862 Msa0759680:exon 20.0%
!!! TTACAACAATATGATAATGT+AGG - chr5_2:15433799-15433818 Msa0759680:intron 20.0%
!!! TAATCAAGTTCTGTTTTTAT+GGG - chr5_2:15434245-15434264 Msa0759680:five_prime_UTR 20.0%
! TTTATAAGGGAATTATGGAA+TGG + chr5_2:15432696-15432715 None:intergenic 25.0%
! GTGTAAAGAAAGAAATAGAT+TGG + chr5_2:15432817-15432836 None:intergenic 25.0%
!!! TTGGTTTGTGTTTCTTTTTT+GGG + chr5_2:15432905-15432924 None:intergenic 25.0%
!!! ATTGGTTTGTGTTTCTTTTT+TGG + chr5_2:15432906-15432925 None:intergenic 25.0%
! ATAAATGAGATAGGATACAT+AGG + chr5_2:15432947-15432966 None:intergenic 25.0%
! TACATGTACATAAATGAGAT+AGG + chr5_2:15432956-15432975 None:intergenic 25.0%
!!! CATTTTTTTCTTATAGACAG+TGG - chr5_2:15433008-15433027 Msa0759680:CDS 25.0%
! TCTTCTTATCTCAAATCAAA+TGG - chr5_2:15433137-15433156 Msa0759680:intron 25.0%
!! AATCAAATGGCATGATTTTT+AGG - chr5_2:15433150-15433169 Msa0759680:intron 25.0%
! AATGTTCATATTCTCAATGA+AGG - chr5_2:15433189-15433208 Msa0759680:intron 25.0%
!!! TTTCAAGTGGTTTTTAAGTA+CGG + chr5_2:15433241-15433260 None:intergenic 25.0%
! TTGATATTTCAAACGATTCT+CGG - chr5_2:15433489-15433508 Msa0759680:intron 25.0%
!! ATTTCTAAGGGCAAATTATA+GGG + chr5_2:15433555-15433574 None:intergenic 25.0%
!! AATTTCTAAGGGCAAATTAT+AGG + chr5_2:15433556-15433575 None:intergenic 25.0%
!! TGTTTTCTTTATAGCCAAAT+TGG - chr5_2:15433734-15433753 Msa0759680:intron 25.0%
!! TTTTGTTAGAACAACCAATT+TGG + chr5_2:15433751-15433770 None:intergenic 25.0%
!!! TTAAGACTTTGAAGCTATTT+TGG - chr5_2:15434183-15434202 Msa0759680:five_prime_UTR 25.0%
!!! GTAATCAAGTTCTGTTTTTA+TGG - chr5_2:15434244-15434263 Msa0759680:five_prime_UTR 25.0%
! TTTATAAGGGAATTATGGAA+TGG + chr5_2:15432696-15432715 None:intergenic 25.0%
! GTGTAAAGAAAGAAATAGAT+TGG + chr5_2:15432817-15432836 None:intergenic 25.0%
!!! TTGGTTTGTGTTTCTTTTTT+GGG + chr5_2:15432905-15432924 None:intergenic 25.0%
!!! ATTGGTTTGTGTTTCTTTTT+TGG + chr5_2:15432906-15432925 None:intergenic 25.0%
! ATAAATGAGATAGGATACAT+AGG + chr5_2:15432947-15432966 None:intergenic 25.0%
! TACATGTACATAAATGAGAT+AGG + chr5_2:15432956-15432975 None:intergenic 25.0%
!!! CATTTTTTTCTTATAGACAG+TGG - chr5_2:15433008-15433027 Msa0759680:CDS 25.0%
! TCTTCTTATCTCAAATCAAA+TGG - chr5_2:15433137-15433156 Msa0759680:intron 25.0%
!! AATCAAATGGCATGATTTTT+AGG - chr5_2:15433150-15433169 Msa0759680:intron 25.0%
! AATGTTCATATTCTCAATGA+AGG - chr5_2:15433189-15433208 Msa0759680:intron 25.0%
!!! TTTCAAGTGGTTTTTAAGTA+CGG + chr5_2:15433241-15433260 None:intergenic 25.0%
! TTGATATTTCAAACGATTCT+CGG - chr5_2:15433489-15433508 Msa0759680:intron 25.0%
!! ATTTCTAAGGGCAAATTATA+GGG + chr5_2:15433555-15433574 None:intergenic 25.0%
!! AATTTCTAAGGGCAAATTAT+AGG + chr5_2:15433556-15433575 None:intergenic 25.0%
!! TGTTTTCTTTATAGCCAAAT+TGG - chr5_2:15433734-15433753 Msa0759680:intron 25.0%
!! TTTTGTTAGAACAACCAATT+TGG + chr5_2:15433751-15433770 None:intergenic 25.0%
!!! TTAAGACTTTGAAGCTATTT+TGG - chr5_2:15434183-15434202 Msa0759680:five_prime_UTR 25.0%
!!! GTAATCAAGTTCTGTTTTTA+TGG - chr5_2:15434244-15434263 Msa0759680:five_prime_UTR 25.0%
! AACAAAAATGATGGAAAAGG+AGG + chr5_2:15432757-15432776 None:intergenic 30.0%
! GGAAACAAAAATGATGGAAA+AGG + chr5_2:15432760-15432779 None:intergenic 30.0%
AACAGTGGAAACAAAAATGA+TGG + chr5_2:15432766-15432785 None:intergenic 30.0%
!!! TGGTTTGTGTTTCTTTTTTG+GGG + chr5_2:15432904-15432923 None:intergenic 30.0%
CTTATAGACAGTGGAAATAA+AGG - chr5_2:15433017-15433036 Msa0759680:CDS 30.0%
AGTGGAAATAAAGGTGAAAA+TGG - chr5_2:15433026-15433045 Msa0759680:CDS 30.0%
AATTCTGTTACTAACATGTC+AGG - chr5_2:15433078-15433097 Msa0759680:CDS 30.0%
TTCATATTCTCAATGAAGGT+GGG - chr5_2:15433193-15433212 Msa0759680:intron 30.0%
! GGTGGGTTCTATAATTTATA+CGG - chr5_2:15433210-15433229 Msa0759680:intron 30.0%
ATAGAGTTTCAACTTTCAAG+TGG + chr5_2:15433254-15433273 None:intergenic 30.0%
GTGTTAGTTCAACAAAAACA+AGG - chr5_2:15433328-15433347 Msa0759680:intron 30.0%
!! CGAATATGAGTTGAGTTTTA+AGG - chr5_2:15433357-15433376 Msa0759680:intron 30.0%
! TTAACCAGATTTTTATGGCT+GGG + chr5_2:15433432-15433451 None:intergenic 30.0%
CTATTTGTAAGTAGAAACTC+CGG + chr5_2:15433455-15433474 None:intergenic 30.0%
TGATATTTCAAACGATTCTC+GGG - chr5_2:15433490-15433509 Msa0759680:intron 30.0%
CTCATATCTTCATTGATAAG+TGG - chr5_2:15433588-15433607 Msa0759680:intron 30.0%
! ATATGATAATGTAGGTGTGA+AGG - chr5_2:15433807-15433826 Msa0759680:intron 30.0%
TCTTATCATCTGTTCCATTT+GGG + chr5_2:15434044-15434063 None:intergenic 30.0%
ATCTTATCATCTGTTCCATT+TGG + chr5_2:15434045-15434064 None:intergenic 30.0%
ACATGATTGAACATGCATTA+GGG + chr5_2:15434092-15434111 None:intergenic 30.0%
! AACAAAAATGATGGAAAAGG+AGG + chr5_2:15432757-15432776 None:intergenic 30.0%
! GGAAACAAAAATGATGGAAA+AGG + chr5_2:15432760-15432779 None:intergenic 30.0%
AACAGTGGAAACAAAAATGA+TGG + chr5_2:15432766-15432785 None:intergenic 30.0%
!!! TGGTTTGTGTTTCTTTTTTG+GGG + chr5_2:15432904-15432923 None:intergenic 30.0%
CTTATAGACAGTGGAAATAA+AGG - chr5_2:15433017-15433036 Msa0759680:CDS 30.0%
AGTGGAAATAAAGGTGAAAA+TGG - chr5_2:15433026-15433045 Msa0759680:CDS 30.0%
AATTCTGTTACTAACATGTC+AGG - chr5_2:15433078-15433097 Msa0759680:CDS 30.0%
TTCATATTCTCAATGAAGGT+GGG - chr5_2:15433193-15433212 Msa0759680:intron 30.0%
! GGTGGGTTCTATAATTTATA+CGG - chr5_2:15433210-15433229 Msa0759680:intron 30.0%
ATAGAGTTTCAACTTTCAAG+TGG + chr5_2:15433254-15433273 None:intergenic 30.0%
GTGTTAGTTCAACAAAAACA+AGG - chr5_2:15433328-15433347 Msa0759680:intron 30.0%
!! CGAATATGAGTTGAGTTTTA+AGG - chr5_2:15433357-15433376 Msa0759680:intron 30.0%
! TTAACCAGATTTTTATGGCT+GGG + chr5_2:15433432-15433451 None:intergenic 30.0%
CTATTTGTAAGTAGAAACTC+CGG + chr5_2:15433455-15433474 None:intergenic 30.0%
TGATATTTCAAACGATTCTC+GGG - chr5_2:15433490-15433509 Msa0759680:intron 30.0%
CTCATATCTTCATTGATAAG+TGG - chr5_2:15433588-15433607 Msa0759680:intron 30.0%
! ATATGATAATGTAGGTGTGA+AGG - chr5_2:15433807-15433826 Msa0759680:intron 30.0%
TCTTATCATCTGTTCCATTT+GGG + chr5_2:15434044-15434063 None:intergenic 30.0%
ATCTTATCATCTGTTCCATT+TGG + chr5_2:15434045-15434064 None:intergenic 30.0%
ACATGATTGAACATGCATTA+GGG + chr5_2:15434092-15434111 None:intergenic 30.0%
GGAATTATGGAATGGAACTA+TGG + chr5_2:15432688-15432707 None:intergenic 35.0%
GGATGTATGGGACAATATTA+TGG + chr5_2:15432736-15432755 None:intergenic 35.0%
TGACAGTGAAGTAATCTGAA+AGG + chr5_2:15432881-15432900 None:intergenic 35.0%
AAAGAAACACAAACCAATGC+AGG - chr5_2:15432908-15432927 Msa0759680:CDS 35.0%
GTTCATATTCTCAATGAAGG+TGG - chr5_2:15433192-15433211 Msa0759680:intron 35.0%
! GTTAACCAGATTTTTATGGC+TGG + chr5_2:15433433-15433452 None:intergenic 35.0%
GCCATAAAAATCTGGTTAAC+CGG - chr5_2:15433433-15433452 Msa0759680:intron 35.0%
! TCCGGTTAACCAGATTTTTA+TGG + chr5_2:15433437-15433456 None:intergenic 35.0%
TGGGAATGTGGATAGAAATA+AGG - chr5_2:15433870-15433889 Msa0759680:intron 35.0%
TGGATAGAAATAAGGTCCTA+AGG - chr5_2:15433878-15433897 Msa0759680:CDS 35.0%
TAGAAATAAGGTCCTAAGGA+AGG - chr5_2:15433882-15433901 Msa0759680:CDS 35.0%
! CAGGAAAAAGAGCAAAGTTT+TGG - chr5_2:15433914-15433933 Msa0759680:CDS 35.0%
! ACCAAGTTAGCTTCAACATA+TGG + chr5_2:15433940-15433959 None:intergenic 35.0%
ATATGTTGAAGCTAACTTGG+TGG - chr5_2:15433939-15433958 Msa0759680:intron 35.0%
TATGCAAAAAATGCACCTTC+TGG - chr5_2:15433985-15434004 Msa0759680:intron 35.0%
! GTGTTTTTCACATATCCAGA+AGG + chr5_2:15434003-15434022 None:intergenic 35.0%
TTAGCAATACCAAACCCAAA+TGG - chr5_2:15434027-15434046 Msa0759680:intron 35.0%
CACATGATTGAACATGCATT+AGG + chr5_2:15434093-15434112 None:intergenic 35.0%
GGAATTATGGAATGGAACTA+TGG + chr5_2:15432688-15432707 None:intergenic 35.0%
GGATGTATGGGACAATATTA+TGG + chr5_2:15432736-15432755 None:intergenic 35.0%
TGACAGTGAAGTAATCTGAA+AGG + chr5_2:15432881-15432900 None:intergenic 35.0%
AAAGAAACACAAACCAATGC+AGG - chr5_2:15432908-15432927 Msa0759680:CDS 35.0%
GTTCATATTCTCAATGAAGG+TGG - chr5_2:15433192-15433211 Msa0759680:intron 35.0%
! GTTAACCAGATTTTTATGGC+TGG + chr5_2:15433433-15433452 None:intergenic 35.0%
GCCATAAAAATCTGGTTAAC+CGG - chr5_2:15433433-15433452 Msa0759680:intron 35.0%
! TCCGGTTAACCAGATTTTTA+TGG + chr5_2:15433437-15433456 None:intergenic 35.0%
TGGGAATGTGGATAGAAATA+AGG - chr5_2:15433870-15433889 Msa0759680:intron 35.0%
TGGATAGAAATAAGGTCCTA+AGG - chr5_2:15433878-15433897 Msa0759680:CDS 35.0%
TAGAAATAAGGTCCTAAGGA+AGG - chr5_2:15433882-15433901 Msa0759680:CDS 35.0%
! CAGGAAAAAGAGCAAAGTTT+TGG - chr5_2:15433914-15433933 Msa0759680:CDS 35.0%
! ACCAAGTTAGCTTCAACATA+TGG + chr5_2:15433940-15433959 None:intergenic 35.0%
ATATGTTGAAGCTAACTTGG+TGG - chr5_2:15433939-15433958 Msa0759680:intron 35.0%
TATGCAAAAAATGCACCTTC+TGG - chr5_2:15433985-15434004 Msa0759680:intron 35.0%
! GTGTTTTTCACATATCCAGA+AGG + chr5_2:15434003-15434022 None:intergenic 35.0%
TTAGCAATACCAAACCCAAA+TGG - chr5_2:15434027-15434046 Msa0759680:intron 35.0%
CACATGATTGAACATGCATT+AGG + chr5_2:15434093-15434112 None:intergenic 35.0%
GATGGAAAAGGAGGATGTAT+GGG + chr5_2:15432748-15432767 None:intergenic 40.0%
TGATGGAAAAGGAGGATGTA+TGG + chr5_2:15432749-15432768 None:intergenic 40.0%
AAGAAAAAGGGGTTGAACAG+TGG + chr5_2:15432781-15432800 None:intergenic 40.0%
AGCTTGTGAAATACCTGCAT+TGG + chr5_2:15432924-15432943 None:intergenic 40.0%
!! AAGGTGAAAATGGACTGTGA+TGG - chr5_2:15433036-15433055 Msa0759680:CDS 40.0%
ATGGCTGTGAAAGAAGAGTT+CGG - chr5_2:15433055-15433074 Msa0759680:CDS 40.0%
ACGTTGAAGATTGTGAACGT+TGG + chr5_2:15433280-15433299 None:intergenic 40.0%
CGACTCAAGACCAATTATCA+CGG - chr5_2:15433405-15433424 Msa0759680:intron 40.0%
ATAGGGTGAACTGCTTTGAT+AGG + chr5_2:15433538-15433557 None:intergenic 40.0%
TGTGAATAGAGAGCAAAGCA+AGG - chr5_2:15433837-15433856 Msa0759680:intron 40.0%
GCCATATGTTGAAGCTAACT+TGG - chr5_2:15433936-15433955 Msa0759680:intron 40.0%
GCATATGCCTGTGTTATGTA+GGG + chr5_2:15433970-15433989 None:intergenic 40.0%
TGCATATGCCTGTGTTATGT+AGG + chr5_2:15433971-15433990 None:intergenic 40.0%
! TCATCTGTTCCATTTGGGTT+TGG + chr5_2:15434039-15434058 None:intergenic 40.0%
AGGGTTATCATCACTGAAGA+AGG + chr5_2:15434073-15434092 None:intergenic 40.0%
GATGGAAAAGGAGGATGTAT+GGG + chr5_2:15432748-15432767 None:intergenic 40.0%
TGATGGAAAAGGAGGATGTA+TGG + chr5_2:15432749-15432768 None:intergenic 40.0%
AAGAAAAAGGGGTTGAACAG+TGG + chr5_2:15432781-15432800 None:intergenic 40.0%
AGCTTGTGAAATACCTGCAT+TGG + chr5_2:15432924-15432943 None:intergenic 40.0%
!! AAGGTGAAAATGGACTGTGA+TGG - chr5_2:15433036-15433055 Msa0759680:CDS 40.0%
ATGGCTGTGAAAGAAGAGTT+CGG - chr5_2:15433055-15433074 Msa0759680:CDS 40.0%
ACGTTGAAGATTGTGAACGT+TGG + chr5_2:15433280-15433299 None:intergenic 40.0%
CGACTCAAGACCAATTATCA+CGG - chr5_2:15433405-15433424 Msa0759680:intron 40.0%
ATAGGGTGAACTGCTTTGAT+AGG + chr5_2:15433538-15433557 None:intergenic 40.0%
TGTGAATAGAGAGCAAAGCA+AGG - chr5_2:15433837-15433856 Msa0759680:intron 40.0%
GCCATATGTTGAAGCTAACT+TGG - chr5_2:15433936-15433955 Msa0759680:intron 40.0%
GCATATGCCTGTGTTATGTA+GGG + chr5_2:15433970-15433989 None:intergenic 40.0%
TGCATATGCCTGTGTTATGT+AGG + chr5_2:15433971-15433990 None:intergenic 40.0%
! TCATCTGTTCCATTTGGGTT+TGG + chr5_2:15434039-15434058 None:intergenic 40.0%
AGGGTTATCATCACTGAAGA+AGG + chr5_2:15434073-15434092 None:intergenic 40.0%
CAAACGATTCTCGGGTATCT+AGG - chr5_2:15433498-15433517 Msa0759680:intron 45.0%
TCGGGTATCTAGGTTCATGA+TGG - chr5_2:15433508-15433527 Msa0759680:intron 45.0%
AAAGCAAGGTAACCGTGACT+GGG - chr5_2:15433851-15433870 Msa0759680:intron 45.0%
TCTATCCACATTCCCAGTCA+CGG + chr5_2:15433866-15433885 None:intergenic 45.0%
GGCATATCCCTACATAACAC+AGG - chr5_2:15433960-15433979 Msa0759680:intron 45.0%
CAAACGATTCTCGGGTATCT+AGG - chr5_2:15433498-15433517 Msa0759680:intron 45.0%
TCGGGTATCTAGGTTCATGA+TGG - chr5_2:15433508-15433527 Msa0759680:intron 45.0%
AAAGCAAGGTAACCGTGACT+GGG - chr5_2:15433851-15433870 Msa0759680:intron 45.0%
TCTATCCACATTCCCAGTCA+CGG + chr5_2:15433866-15433885 None:intergenic 45.0%
GGCATATCCCTACATAACAC+AGG - chr5_2:15433960-15433979 Msa0759680:intron 45.0%
!! TATATAAAAAAAATTTCTAA+GGG + chr5_2:15433567-15433586 None:intergenic 5.0%
!! TTATATAAAAAAAATTTCTA+AGG + chr5_2:15433568-15433587 None:intergenic 5.0%
!! TATATAAAAAAAATTTCTAA+GGG + chr5_2:15433567-15433586 None:intergenic 5.0%
!! TTATATAAAAAAAATTTCTA+AGG + chr5_2:15433568-15433587 None:intergenic 5.0%
ATGGCTGGGACCGTGATAAT+TGG + chr5_2:15433418-15433437 None:intergenic 50.0%
CGGTCCCAGCCATAAAAATC+TGG - chr5_2:15433425-15433444 Msa0759680:intron 50.0%
GGGTGAACTGCTTTGATAGG+CGG + chr5_2:15433535-15433554 None:intergenic 50.0%
CAAAGCAAGGTAACCGTGAC+TGG - chr5_2:15433850-15433869 Msa0759680:intron 50.0%
ATGGCTGGGACCGTGATAAT+TGG + chr5_2:15433418-15433437 None:intergenic 50.0%
CGGTCCCAGCCATAAAAATC+TGG - chr5_2:15433425-15433444 Msa0759680:intron 50.0%
GGGTGAACTGCTTTGATAGG+CGG + chr5_2:15433535-15433554 None:intergenic 50.0%
CAAAGCAAGGTAACCGTGAC+TGG - chr5_2:15433850-15433869 Msa0759680:intron 50.0%
GGTAACCGTGACTGGGAATG+TGG - chr5_2:15433858-15433877 Msa0759680:intron 55.0%
CTGTGCTCTGCACCTTCCTT+AGG + chr5_2:15433897-15433916 None:intergenic 55.0%
! CTAAGGAAGGTGCAGAGCAC+AGG - chr5_2:15433895-15433914 Msa0759680:CDS 55.0%
GGTAACCGTGACTGGGAATG+TGG - chr5_2:15433858-15433877 Msa0759680:intron 55.0%
CTGTGCTCTGCACCTTCCTT+AGG + chr5_2:15433897-15433916 None:intergenic 55.0%
! CTAAGGAAGGTGCAGAGCAC+AGG - chr5_2:15433895-15433914 Msa0759680:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 15432676 15434297 15432676 ID=Msa0759680;Name=Msa0759680
chr5_2 mRNA 15432676 15434297 15432676 ID=Msa0759680-mRNA-1;Parent=Msa0759680;Name=Msa0759680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=185|1|1|1|1|1|3|184|145
chr5_2 exon 15432676 15433152 15432676 ID=Msa0759680-mRNA-1:exon:7004;Parent=Msa0759680-mRNA-1
chr5_2 exon 15433874 15433949 15433874 ID=Msa0759680-mRNA-1:exon:7003;Parent=Msa0759680-mRNA-1
chr5_2 exon 15434044 15434297 15434044 ID=Msa0759680-mRNA-1:exon:7002;Parent=Msa0759680-mRNA-1
chr5_2 five_prime_UTR 15434113 15434297 15434113 ID=Msa0759680-mRNA-1:five_prime_utr;Parent=Msa0759680-mRNA-1
chr5_2 CDS 15434044 15434112 15434044 ID=Msa0759680-mRNA-1:cds;Parent=Msa0759680-mRNA-1
chr5_2 CDS 15433874 15433949 15433874 ID=Msa0759680-mRNA-1:cds;Parent=Msa0759680-mRNA-1
chr5_2 CDS 15432860 15433152 15432860 ID=Msa0759680-mRNA-1:cds;Parent=Msa0759680-mRNA-1
chr5_2 three_prime_UTR 15432676 15432859 15432676 ID=Msa0759680-mRNA-1:three_prime_utr;Parent=Msa0759680-mRNA-1
Gene Sequence

>Msa0759680

ATGGGTGCTCTAGATTTCCTTTCAGATTACTTCACTGTCACCCCAAAAAAGAAACACAAACCAATGCAGACAGTGGAAATAAAGGTGAAAATGGACTGTGATGGCTGTGAAAGAAGAGTTCGGAATTCTGTTACTAACATGTCAGGTGTGAAGGAAGTAGATGTGAATAGAGAGCAAAGCAAGGTAACCGTGACTGGGAATGTGGATAGAAATAAGGTCCTAAGGAAGGTGCAGAGCACAGGAAAAAGAGCAAAGTTTTGGCCATATGTTGAAGCTAACTTGGTGGCATATCCCTACATAACACAGGCATATGCAAAAAATGCACCTTCTGGATATGTGAAAAACACTGAATTAGCAATACCAAACCCAAATGGAACAGATGATAAGATCACTTCCTTCTTCAGTGATGATAACCCTAATGCATGTTCAATCATGTGA

Protein sequence

>Msa0759680

MGALDFLSDYFTVTPKKKHKPMQTVEIKVKMDCDGCERRVRNSVTNMSGVKEVDVNREQSKVTVTGNVDRNKVLRKVQSTGKRAKFWPYVEANLVAYPYITQAYAKNAPSGYVKNTELAIPNPNGTDDKITSFFSDDNPNACSIM*