Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0839680 | XP_003612467.2 | 93.846 | 130 | 8 | 0 | 4 | 133 | 85 | 214 | 2.64e-78 | 246 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0839680 | sp|Q8W4R9|WTR35_ARATH | 63.077 | 130 | 48 | 0 | 4 | 133 | 95 | 224 | 2.62e-53 | 175 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0839680 | G7K3Z3 | 93.846 | 130 | 8 | 0 | 4 | 133 | 85 | 214 | 1.26e-78 | 246 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0063940 | Msa0839680 | 0.814486 | 1.503786e-51 | -8.615850e-47 |
Msa0839680 | Msa1044250 | 0.817042 | 4.048519e-52 | -8.615850e-47 |
Msa0839680 | Msa1439250 | 0.800585 | 1.344832e-48 | -8.615850e-47 |
Msa0839680 | Msa1439930 | 0.819345 | 1.219385e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0839680 | MtrunA17_Chr5g0408001 | 93.846 | 130 | 8 | 0 | 4 | 133 | 85 | 214 | 2.43e-82 | 246 |
Msa0839680 | MtrunA17_Chr5g0408031 | 84.444 | 135 | 19 | 1 | 1 | 133 | 82 | 216 | 7.27e-75 | 227 |
Msa0839680 | MtrunA17_Chr5g0407991 | 86.154 | 130 | 18 | 0 | 4 | 133 | 84 | 213 | 1.07e-74 | 227 |
Msa0839680 | MtrunA17_Chr5g0408041 | 84.444 | 135 | 19 | 1 | 1 | 133 | 83 | 217 | 1.39e-73 | 224 |
Msa0839680 | MtrunA17_Chr8g0369841 | 70.769 | 130 | 38 | 0 | 4 | 133 | 84 | 213 | 2.14e-63 | 197 |
Msa0839680 | MtrunA17_Chr5g0407971 | 73.077 | 130 | 35 | 0 | 4 | 133 | 86 | 215 | 2.16e-60 | 190 |
Msa0839680 | MtrunA17_Chr1g0164831 | 37.398 | 123 | 59 | 3 | 7 | 127 | 79 | 185 | 8.25e-19 | 80.5 |
Msa0839680 | MtrunA17_Chr1g0155761 | 36.765 | 136 | 83 | 1 | 1 | 133 | 93 | 228 | 1.12e-18 | 80.5 |
Msa0839680 | MtrunA17_Chr3g0142131 | 37.209 | 129 | 75 | 2 | 1 | 127 | 92 | 216 | 3.35e-18 | 79.0 |
Msa0839680 | MtrunA17_Chr6g0483401 | 33.083 | 133 | 78 | 2 | 1 | 133 | 82 | 203 | 3.06e-17 | 76.3 |
Msa0839680 | MtrunA17_Chr2g0284261 | 35.354 | 99 | 60 | 1 | 7 | 105 | 86 | 180 | 1.40e-15 | 71.6 |
Msa0839680 | MtrunA17_Chr1g0211801 | 44.286 | 70 | 39 | 0 | 8 | 77 | 88 | 157 | 2.09e-15 | 70.5 |
Msa0839680 | MtrunA17_Chr1g0160171 | 35.385 | 130 | 63 | 4 | 7 | 133 | 94 | 205 | 4.63e-15 | 70.1 |
Msa0839680 | MtrunA17_Chr3g0114691 | 33.071 | 127 | 72 | 1 | 7 | 133 | 98 | 211 | 6.21e-15 | 70.1 |
Msa0839680 | MtrunA17_Chr6g0451261 | 34.188 | 117 | 74 | 2 | 7 | 123 | 89 | 202 | 6.82e-15 | 70.1 |
Msa0839680 | MtrunA17_Chr3g0114711 | 41.026 | 78 | 46 | 0 | 7 | 84 | 92 | 169 | 1.42e-14 | 68.9 |
Msa0839680 | MtrunA17_Chr7g0271561 | 42.391 | 92 | 46 | 2 | 4 | 95 | 82 | 166 | 3.81e-14 | 67.8 |
Msa0839680 | MtrunA17_Chr5g0413931 | 36.000 | 125 | 75 | 3 | 8 | 131 | 85 | 205 | 1.49e-13 | 65.9 |
Msa0839680 | MtrunA17_Chr8g0334731 | 34.000 | 100 | 62 | 2 | 8 | 105 | 71 | 168 | 5.77e-13 | 62.8 |
Msa0839680 | MtrunA17_Chr1g0182291 | 43.056 | 72 | 41 | 0 | 7 | 78 | 93 | 164 | 6.52e-13 | 64.3 |
Msa0839680 | MtrunA17_Chr1g0160111 | 33.696 | 92 | 54 | 1 | 4 | 95 | 82 | 166 | 8.07e-13 | 63.9 |
Msa0839680 | MtrunA17_Chr6g0451201 | 40.789 | 76 | 45 | 0 | 8 | 83 | 89 | 164 | 9.96e-13 | 63.5 |
Msa0839680 | MtrunA17_Chr4g0073241 | 39.241 | 79 | 48 | 0 | 1 | 79 | 83 | 161 | 1.34e-12 | 63.2 |
Msa0839680 | MtrunA17_Chr6g0463971 | 40.580 | 69 | 41 | 0 | 10 | 78 | 96 | 164 | 1.43e-12 | 63.2 |
Msa0839680 | MtrunA17_Chr3g0081511 | 34.000 | 100 | 63 | 2 | 7 | 105 | 95 | 192 | 1.58e-12 | 63.2 |
Msa0839680 | MtrunA17_Chr8g0354121 | 35.294 | 85 | 55 | 0 | 7 | 91 | 91 | 175 | 2.71e-12 | 62.4 |
Msa0839680 | MtrunA17_Chr8g0334761 | 31.667 | 120 | 67 | 2 | 7 | 126 | 89 | 193 | 3.20e-12 | 62.4 |
Msa0839680 | MtrunA17_Chr6g0451211 | 37.179 | 78 | 49 | 0 | 6 | 83 | 91 | 168 | 3.38e-12 | 62.0 |
Msa0839680 | MtrunA17_Chr7g0255561 | 42.029 | 69 | 40 | 0 | 7 | 75 | 92 | 160 | 3.61e-12 | 62.0 |
Msa0839680 | MtrunA17_Chr7g0255581 | 42.029 | 69 | 40 | 0 | 7 | 75 | 92 | 160 | 3.61e-12 | 62.0 |
Msa0839680 | MtrunA17_Chr1g0160181 | 31.343 | 134 | 75 | 3 | 2 | 133 | 91 | 209 | 5.96e-12 | 61.6 |
Msa0839680 | MtrunA17_Chr7g0227921 | 29.787 | 141 | 85 | 2 | 6 | 132 | 88 | 228 | 7.56e-12 | 61.2 |
Msa0839680 | MtrunA17_Chr3g0081421 | 41.429 | 70 | 41 | 0 | 7 | 76 | 95 | 164 | 8.54e-12 | 60.8 |
Msa0839680 | MtrunA17_Chr1g0186641 | 38.750 | 80 | 49 | 0 | 10 | 89 | 94 | 173 | 1.86e-11 | 60.1 |
Msa0839680 | MtrunA17_Chr1g0150151 | 43.056 | 72 | 41 | 0 | 8 | 79 | 91 | 162 | 2.11e-11 | 59.7 |
Msa0839680 | MtrunA17_Chr3g0114731 | 40.000 | 70 | 42 | 0 | 7 | 76 | 96 | 165 | 3.80e-11 | 59.3 |
Msa0839680 | MtrunA17_Chr3g0129591 | 39.394 | 66 | 40 | 0 | 13 | 78 | 91 | 156 | 4.78e-11 | 58.9 |
Msa0839680 | MtrunA17_Chr7g0263101 | 37.500 | 72 | 45 | 0 | 7 | 78 | 91 | 162 | 5.72e-11 | 58.5 |
Msa0839680 | MtrunA17_Chr4g0050891 | 34.677 | 124 | 69 | 2 | 6 | 127 | 88 | 201 | 8.85e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0839680 | AT4G19185.2 | 63.077 | 130 | 48 | 0 | 4 | 133 | 17 | 146 | 8.26e-55 | 174 |
Msa0839680 | AT4G19185.1 | 63.077 | 130 | 48 | 0 | 4 | 133 | 95 | 224 | 2.67e-54 | 175 |
Msa0839680 | AT5G45370.2 | 61.538 | 130 | 50 | 0 | 4 | 133 | 94 | 223 | 3.97e-50 | 164 |
Msa0839680 | AT5G45370.4 | 61.538 | 130 | 50 | 0 | 4 | 133 | 94 | 223 | 3.97e-50 | 164 |
Msa0839680 | AT3G45870.9 | 63.077 | 130 | 44 | 2 | 4 | 133 | 86 | 211 | 3.19e-47 | 154 |
Msa0839680 | AT3G45870.8 | 63.077 | 130 | 44 | 2 | 4 | 133 | 86 | 211 | 2.02e-46 | 153 |
Msa0839680 | AT3G45870.1 | 63.077 | 130 | 44 | 2 | 4 | 133 | 86 | 211 | 1.45e-45 | 152 |
Msa0839680 | AT5G45370.6 | 58.678 | 121 | 50 | 0 | 13 | 133 | 1 | 121 | 1.47e-44 | 147 |
Msa0839680 | AT5G45370.5 | 58.678 | 121 | 50 | 0 | 13 | 133 | 1 | 121 | 1.47e-44 | 147 |
Msa0839680 | AT5G45370.1 | 55.385 | 130 | 34 | 1 | 4 | 133 | 94 | 199 | 4.69e-40 | 137 |
Msa0839680 | AT5G45370.3 | 52.222 | 90 | 43 | 0 | 44 | 133 | 74 | 163 | 1.20e-25 | 99.0 |
Msa0839680 | AT3G45870.4 | 54.839 | 93 | 38 | 2 | 41 | 133 | 1 | 89 | 6.37e-25 | 93.2 |
Msa0839680 | AT3G45870.3 | 53.846 | 91 | 38 | 2 | 43 | 133 | 50 | 136 | 1.34e-22 | 88.6 |
Msa0839680 | AT3G45870.6 | 53.846 | 91 | 38 | 2 | 43 | 133 | 50 | 136 | 4.94e-22 | 88.2 |
Msa0839680 | AT3G45870.7 | 53.846 | 91 | 38 | 2 | 43 | 133 | 50 | 136 | 4.94e-22 | 88.2 |
Msa0839680 | AT3G45870.5 | 53.846 | 91 | 38 | 2 | 43 | 133 | 50 | 136 | 2.71e-21 | 87.0 |
Msa0839680 | AT1G75500.1 | 33.858 | 127 | 76 | 3 | 1 | 127 | 91 | 209 | 1.52e-18 | 80.5 |
Msa0839680 | AT1G75500.2 | 33.858 | 127 | 76 | 3 | 1 | 127 | 91 | 209 | 1.52e-18 | 80.5 |
Msa0839680 | AT3G53210.2 | 31.298 | 131 | 76 | 2 | 3 | 133 | 26 | 142 | 5.68e-18 | 78.2 |
Msa0839680 | AT3G53210.3 | 30.709 | 127 | 74 | 2 | 7 | 133 | 87 | 199 | 2.26e-17 | 75.9 |
Msa0839680 | AT3G53210.1 | 30.709 | 127 | 74 | 2 | 7 | 133 | 87 | 199 | 5.50e-17 | 75.9 |
Msa0839680 | AT1G44800.1 | 34.646 | 127 | 68 | 2 | 7 | 133 | 88 | 199 | 2.75e-15 | 71.2 |
Msa0839680 | AT4G30420.1 | 36.364 | 99 | 61 | 1 | 7 | 105 | 79 | 175 | 1.20e-14 | 69.3 |
Msa0839680 | AT4G30420.2 | 36.364 | 99 | 61 | 1 | 7 | 105 | 89 | 185 | 1.29e-14 | 69.3 |
Msa0839680 | AT1G21890.1 | 47.143 | 70 | 37 | 0 | 7 | 76 | 88 | 157 | 1.50e-14 | 69.3 |
Msa0839680 | AT1G21890.2 | 47.143 | 70 | 37 | 0 | 7 | 76 | 88 | 157 | 1.55e-14 | 68.9 |
Msa0839680 | AT4G08300.1 | 47.222 | 72 | 38 | 0 | 7 | 78 | 88 | 159 | 2.35e-14 | 68.6 |
Msa0839680 | AT1G11450.1 | 35.000 | 100 | 59 | 3 | 8 | 105 | 2 | 97 | 2.83e-14 | 67.8 |
Msa0839680 | AT1G11460.1 | 35.000 | 100 | 60 | 3 | 8 | 105 | 94 | 190 | 3.07e-14 | 68.2 |
Msa0839680 | AT1G11450.2 | 35.000 | 100 | 59 | 3 | 8 | 105 | 43 | 138 | 4.37e-14 | 67.4 |
Msa0839680 | AT1G11450.5 | 35.000 | 100 | 59 | 3 | 8 | 105 | 50 | 145 | 4.90e-14 | 67.4 |
Msa0839680 | AT1G11450.4 | 35.000 | 100 | 59 | 3 | 8 | 105 | 94 | 189 | 6.24e-14 | 67.4 |
Msa0839680 | AT1G11450.3 | 35.000 | 100 | 59 | 3 | 8 | 105 | 94 | 189 | 7.19e-14 | 67.4 |
Msa0839680 | AT4G01440.4 | 34.000 | 100 | 62 | 2 | 7 | 105 | 87 | 183 | 1.18e-13 | 66.2 |
Msa0839680 | AT4G01430.2 | 38.235 | 102 | 56 | 3 | 8 | 105 | 87 | 185 | 1.55e-13 | 66.2 |
Msa0839680 | AT4G01430.1 | 38.235 | 102 | 56 | 3 | 8 | 105 | 87 | 185 | 1.61e-13 | 66.2 |
Msa0839680 | AT4G01440.3 | 34.000 | 100 | 62 | 2 | 7 | 105 | 87 | 183 | 2.00e-13 | 65.9 |
Msa0839680 | AT3G18200.2 | 29.323 | 133 | 77 | 2 | 1 | 133 | 106 | 221 | 2.27e-13 | 65.9 |
Msa0839680 | AT4G01440.1 | 34.000 | 100 | 62 | 2 | 7 | 105 | 87 | 183 | 2.68e-13 | 65.5 |
Msa0839680 | AT5G40240.2 | 35.238 | 105 | 67 | 1 | 5 | 108 | 109 | 213 | 3.37e-13 | 65.5 |
Msa0839680 | AT5G40240.1 | 35.238 | 105 | 67 | 1 | 5 | 108 | 95 | 199 | 3.62e-13 | 65.5 |
Msa0839680 | AT5G40240.3 | 35.238 | 105 | 67 | 1 | 5 | 108 | 95 | 199 | 3.62e-13 | 65.5 |
Msa0839680 | AT1G01070.2 | 45.833 | 72 | 38 | 1 | 8 | 78 | 47 | 118 | 5.55e-13 | 64.7 |
Msa0839680 | AT3G28100.2 | 35.789 | 95 | 61 | 0 | 13 | 107 | 97 | 191 | 6.84e-13 | 63.9 |
Msa0839680 | AT5G07050.1 | 40.000 | 70 | 42 | 0 | 7 | 76 | 95 | 164 | 7.01e-13 | 64.7 |
Msa0839680 | AT1G01070.1 | 45.833 | 72 | 38 | 1 | 8 | 78 | 94 | 165 | 8.10e-13 | 64.3 |
Msa0839680 | AT5G40230.1 | 37.755 | 98 | 56 | 2 | 14 | 108 | 105 | 200 | 9.20e-13 | 64.3 |
Msa0839680 | AT3G28100.3 | 35.789 | 95 | 61 | 0 | 13 | 107 | 97 | 191 | 1.17e-12 | 63.2 |
Msa0839680 | AT3G28100.1 | 35.789 | 95 | 61 | 0 | 13 | 107 | 97 | 191 | 1.90e-12 | 63.2 |
Msa0839680 | AT4G15540.1 | 42.424 | 66 | 38 | 0 | 14 | 79 | 101 | 166 | 3.24e-12 | 62.4 |
Msa0839680 | AT4G15540.2 | 42.424 | 66 | 38 | 0 | 14 | 79 | 101 | 166 | 3.24e-12 | 62.4 |
Msa0839680 | AT3G28130.6 | 37.500 | 72 | 45 | 0 | 13 | 84 | 96 | 167 | 3.49e-12 | 61.2 |
Msa0839680 | AT3G30340.2 | 43.662 | 71 | 40 | 0 | 8 | 78 | 89 | 159 | 4.13e-12 | 62.0 |
Msa0839680 | AT3G28050.1 | 39.726 | 73 | 44 | 0 | 14 | 86 | 96 | 168 | 5.05e-12 | 62.0 |
Msa0839680 | AT3G30340.1 | 43.662 | 71 | 40 | 0 | 8 | 78 | 89 | 159 | 5.54e-12 | 62.0 |
Msa0839680 | AT3G28130.4 | 37.500 | 72 | 45 | 0 | 13 | 84 | 96 | 167 | 5.98e-12 | 61.2 |
Msa0839680 | AT3G28130.5 | 37.500 | 72 | 45 | 0 | 13 | 84 | 10 | 81 | 7.99e-12 | 60.8 |
Msa0839680 | AT3G28130.1 | 37.500 | 72 | 45 | 0 | 13 | 84 | 10 | 81 | 7.99e-12 | 60.8 |
Msa0839680 | AT3G28130.2 | 37.500 | 72 | 45 | 0 | 13 | 84 | 96 | 167 | 1.15e-11 | 60.8 |
Msa0839680 | AT1G09380.1 | 43.836 | 73 | 41 | 0 | 6 | 78 | 84 | 156 | 1.17e-11 | 60.8 |
Msa0839680 | AT2G37460.1 | 43.056 | 72 | 41 | 0 | 7 | 78 | 92 | 163 | 1.24e-11 | 60.8 |
Msa0839680 | AT3G28070.2 | 32.632 | 95 | 64 | 0 | 13 | 107 | 8 | 102 | 1.30e-11 | 60.5 |
Msa0839680 | AT3G28080.4 | 34.737 | 95 | 62 | 0 | 13 | 107 | 8 | 102 | 1.55e-11 | 59.7 |
Msa0839680 | AT3G28070.1 | 32.632 | 95 | 64 | 0 | 13 | 107 | 100 | 194 | 1.79e-11 | 60.5 |
Msa0839680 | AT5G40210.1 | 37.500 | 80 | 50 | 0 | 8 | 87 | 91 | 170 | 1.84e-11 | 60.5 |
Msa0839680 | AT3G28070.3 | 32.632 | 95 | 64 | 0 | 13 | 107 | 100 | 194 | 2.36e-11 | 60.1 |
Msa0839680 | AT3G28080.5 | 34.737 | 95 | 62 | 0 | 13 | 107 | 8 | 102 | 2.46e-11 | 59.7 |
Msa0839680 | AT3G28080.7 | 34.737 | 95 | 62 | 0 | 13 | 107 | 8 | 102 | 2.46e-11 | 59.7 |
Msa0839680 | AT3G28080.8 | 34.737 | 95 | 62 | 0 | 13 | 107 | 8 | 102 | 2.46e-11 | 59.7 |
Msa0839680 | AT3G28080.6 | 34.737 | 95 | 62 | 0 | 13 | 107 | 8 | 102 | 2.46e-11 | 59.7 |
Msa0839680 | AT3G28080.2 | 34.737 | 95 | 62 | 0 | 13 | 107 | 89 | 183 | 2.83e-11 | 59.7 |
Msa0839680 | AT2G39510.1 | 33.721 | 86 | 56 | 1 | 7 | 91 | 85 | 170 | 2.91e-11 | 59.7 |
Msa0839680 | AT3G28080.1 | 34.737 | 95 | 62 | 0 | 13 | 107 | 97 | 191 | 3.11e-11 | 59.7 |
Msa0839680 | AT3G28080.3 | 34.737 | 95 | 62 | 0 | 13 | 107 | 97 | 191 | 3.28e-11 | 59.7 |
Msa0839680 | AT2G40900.1 | 38.571 | 70 | 43 | 0 | 7 | 76 | 88 | 157 | 5.08e-11 | 59.3 |
Find 87 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTTCAATCATATGATTT+TGG | 0.131872 | 5_4:-14816356 | None:intergenic |
CTGGACTTTATACTGTTATC+TGG | 0.194438 | 5_4:+14816194 | Msa0839680:three_prime_UTR |
TGTTTCAGGTGCCATATTTA+TGG | 0.204008 | 5_4:+14814194 | Msa0839680:CDS |
AACATTCAACACAGATTTAC+AGG | 0.243317 | 5_4:-14816617 | None:intergenic |
CTATACCTTCCCAAGTAAAT+TGG | 0.247445 | 5_4:-14815688 | None:intergenic |
CCTTCTGGATGGTTGATTAC+TGG | 0.256668 | 5_4:+14814303 | Msa0839680:CDS |
GGGACTGTTATATGTGTTTC+AGG | 0.257994 | 5_4:+14814180 | Msa0839680:CDS |
GGCTGGAGCAACAAGATATT+AGG | 0.278583 | 5_4:+14815589 | Msa0839680:three_prime_UTR |
ACAGCATATTCATTCTTCTT+TGG | 0.287072 | 5_4:+14814563 | Msa0839680:three_prime_UTR |
AACCAGCTGTTGTTTCTTAT+CGG | 0.288718 | 5_4:+14813813 | Msa0839680:CDS |
CTTTCTGCTTGCTGTGATCA+TGG | 0.290025 | 5_4:+14813896 | Msa0839680:CDS |
CTGTTGTTTCTTATCGGTTT+AGG | 0.308757 | 5_4:+14813819 | Msa0839680:CDS |
CCTTGGAAGTCCAATTTACT+TGG | 0.312041 | 5_4:+14815678 | Msa0839680:three_prime_UTR |
ATTACTGGTTTACAGAATCT+TGG | 0.320787 | 5_4:+14814318 | Msa0839680:CDS |
GGCTGCTTTCTAAGCCATTC+AGG | 0.331299 | 5_4:+14814395 | Msa0839680:exon |
GCGATACAAAACCATAAATA+TGG | 0.332020 | 5_4:-14814205 | None:intergenic |
CCATGTGACAAAAGTATCAT+AGG | 0.335122 | 5_4:+14816154 | Msa0839680:intron |
TCAACCAAGCGAGTGGAGTC+TGG | 0.340279 | 5_4:+14816422 | Msa0839680:three_prime_UTR |
TATCGCGGTCCATCGTTGAT+AGG | 0.350391 | 5_4:+14814222 | Msa0839680:CDS |
CTTCTTTGGAGTTGTACTAA+TGG | 0.357937 | 5_4:+14814577 | Msa0839680:three_prime_UTR |
CTTGGAGTTGTGTTCTTGAT+AGG | 0.362534 | 5_4:+14814357 | Msa0839680:CDS |
AGTGGTCAGCCAGAGCCTTC+TGG | 0.364296 | 5_4:+14814288 | Msa0839680:CDS |
AAGGAATATCTGAGACAATA+TGG | 0.366868 | 5_4:-14815659 | None:intergenic |
GAATCATAGAATGTCGATAA+AGG | 0.391372 | 5_4:+14816379 | Msa0839680:three_prime_UTR |
TTTCTGCTTGCTGTGATCAT+GGG | 0.397915 | 5_4:+14813897 | Msa0839680:CDS |
GACTCCACTCGCTTGGTTGA+AGG | 0.404125 | 5_4:-14816419 | None:intergenic |
GCATTTACATTATGATTTAG+AGG | 0.410010 | 5_4:-14816558 | None:intergenic |
CCGAAAATATATGACCTCTA+TGG | 0.410931 | 5_4:-14816310 | None:intergenic |
TGAATCTTTGCACAATGATA+AGG | 0.426236 | 5_4:-14816534 | None:intergenic |
GCTGGAGCAACAAGATATTA+GGG | 0.433304 | 5_4:+14815590 | Msa0839680:three_prime_UTR |
GACAGGATCGGCAGGCTGTA+AGG | 0.443192 | 5_4:-14813868 | None:intergenic |
GACAATATGGCAGCAAATCC+AGG | 0.453703 | 5_4:-14815646 | None:intergenic |
TGGACTTTATACTGTTATCT+GGG | 0.458497 | 5_4:+14816195 | Msa0839680:three_prime_UTR |
TGCAGTCATGACTTGGAGGC+TGG | 0.458956 | 5_4:+14815572 | Msa0839680:three_prime_UTR |
TCATTCTGTGGTATAATCAC+TGG | 0.469749 | 5_4:-14814255 | None:intergenic |
ATATTGTCTCAGATATTCCT+TGG | 0.477005 | 5_4:+14815661 | Msa0839680:three_prime_UTR |
AGGTTGAAGTGGAACGTAAA+GGG | 0.477774 | 5_4:-14815626 | None:intergenic |
TTAGTTATGCAGTCATGACT+TGG | 0.485110 | 5_4:+14815565 | Msa0839680:three_prime_UTR |
CTGAAAATTATTTCATTCTG+TGG | 0.487398 | 5_4:-14814267 | None:intergenic |
TTTCCCAGACTCCACTCGCT+TGG | 0.489577 | 5_4:-14816426 | None:intergenic |
CATGTGACAAAAGTATCATA+GGG | 0.490127 | 5_4:+14816155 | Msa0839680:intron |
GTAAATGCCTTGTAAAAGAC+TGG | 0.491286 | 5_4:+14816573 | Msa0839680:three_prime_UTR |
AACAAAAGACAGGCAACTGT+TGG | 0.492154 | 5_4:+14816227 | Msa0839680:three_prime_UTR |
GTTATGCAGTCATGACTTGG+AGG | 0.496051 | 5_4:+14815568 | Msa0839680:three_prime_UTR |
CTTTGGTCATGAATAATAAG+TGG | 0.500106 | 5_4:-14816281 | None:intergenic |
CCAAGTAAATTGGACTTCCA+AGG | 0.504426 | 5_4:-14815678 | None:intergenic |
TTTGAAGGTCTGGCAAAGGT+TGG | 0.506771 | 5_4:+14814156 | Msa0839680:CDS |
GCTGTCACAGATAGATATGC+AGG | 0.509590 | 5_4:-14814545 | None:intergenic |
TGACTGATTTGTCAAGTGAC+TGG | 0.511678 | 5_4:+14814977 | Msa0839680:three_prime_UTR |
GCAAGCAGAAAGGTAAAGAC+AGG | 0.511897 | 5_4:-14813885 | None:intergenic |
GACCTCTATGGTGTGCACTT+TGG | 0.515302 | 5_4:-14816298 | None:intergenic |
CAGGTTGAAGTGGAACGTAA+AGG | 0.520326 | 5_4:-14815627 | None:intergenic |
CTTTACGTTCCACTTCAACC+TGG | 0.521482 | 5_4:+14815628 | Msa0839680:three_prime_UTR |
GAAGGTCTGGCAAAGGTTGG+AGG | 0.524326 | 5_4:+14814159 | Msa0839680:CDS |
TGTAAGGCAGCGGCGTAAGT+TGG | 0.526713 | 5_4:-14813852 | None:intergenic |
GAAGTCCAATTTACTTGGGA+AGG | 0.527912 | 5_4:+14815683 | Msa0839680:three_prime_UTR |
ATCAACCATCCAGAAGGCTC+TGG | 0.528143 | 5_4:-14814297 | None:intergenic |
TGGTTGAAGGCTCGTACACT+AGG | 0.530989 | 5_4:-14816406 | None:intergenic |
CATTTACATTATGATTTAGA+GGG | 0.531297 | 5_4:-14816557 | None:intergenic |
TTCTGCTTGCTGTGATCATG+GGG | 0.532883 | 5_4:+14813898 | Msa0839680:CDS |
TGGTTTACAGAATCTTGGAT+TGG | 0.538402 | 5_4:+14814323 | Msa0839680:CDS |
CAACCAAGCGAGTGGAGTCT+GGG | 0.550068 | 5_4:+14816423 | Msa0839680:three_prime_UTR |
ATCGGCAGGCTGTAAGGCAG+CGG | 0.552074 | 5_4:-14813862 | None:intergenic |
AGTCATGACTGCATAACTAA+AGG | 0.555483 | 5_4:-14815562 | None:intergenic |
AAGGTCTGGCAAAGGTTGGA+GGG | 0.559834 | 5_4:+14814160 | Msa0839680:CDS |
AAGGTAAAGACAGGATCGGC+AGG | 0.560896 | 5_4:-14813876 | None:intergenic |
CAAGATATTAGGGCCAACTC+TGG | 0.563178 | 5_4:+14815600 | Msa0839680:three_prime_UTR |
CTTGGAAGTCCAATTTACTT+GGG | 0.563864 | 5_4:+14815679 | Msa0839680:three_prime_UTR |
TGGGTTTAGGGATGCGCCGG+AGG | 0.567071 | 5_4:-14816336 | None:intergenic |
ACGTAAAGGGCAACCAGAGT+TGG | 0.571351 | 5_4:-14815613 | None:intergenic |
GCAGCAAATCCAGGTTGAAG+TGG | 0.575642 | 5_4:-14815637 | None:intergenic |
GATAGGCAACTGCACGTGCA+TGG | 0.575734 | 5_4:+14814374 | Msa0839680:CDS |
AACCGATAAGAAACAACAGC+TGG | 0.580837 | 5_4:-14813815 | None:intergenic |
GTCAGCCAGAGCCTTCTGGA+TGG | 0.583901 | 5_4:+14814292 | Msa0839680:CDS |
CATGATCACAGCAAGCAGAA+AGG | 0.593402 | 5_4:-14813895 | None:intergenic |
ACTGCATTTAACAATTAACA+TGG | 0.599862 | 5_4:-14816657 | None:intergenic |
CGAGCCTTCAACCAAGCGAG+TGG | 0.608207 | 5_4:+14816415 | Msa0839680:three_prime_UTR |
CCAGTAATCAACCATCCAGA+AGG | 0.612259 | 5_4:-14814303 | None:intergenic |
CAGAAAGGTAAAGACAGGAT+CGG | 0.612494 | 5_4:-14813880 | None:intergenic |
CATAGAATGTCGATAAAGGA+CGG | 0.614215 | 5_4:+14816383 | Msa0839680:three_prime_UTR |
TGTGACAAAAGTATCATAGG+GGG | 0.664134 | 5_4:+14816157 | Msa0839680:intron |
GACCAAAGTGCACACCATAG+AGG | 0.672060 | 5_4:+14816296 | Msa0839680:three_prime_UTR |
ATGTGACAAAAGTATCATAG+GGG | 0.680397 | 5_4:+14816156 | Msa0839680:intron |
TCTTTGCACAATGATAAGGT+TGG | 0.687746 | 5_4:-14816530 | None:intergenic |
TCTGTATATCCTATCAACGA+TGG | 0.693002 | 5_4:-14814231 | None:intergenic |
GTGACAAAAGTATCATAGGG+GGG | 0.713394 | 5_4:+14816158 | Msa0839680:intron |
TCTTATCTCTACAAGCAGAG+AGG | 0.720364 | 5_4:+14816464 | Msa0839680:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACAAAAAATAATCATTTAA+TGG | - | chr5_4:14814442-14814461 | None:intergenic | 10.0% |
!!! | AATTTTCATTAATAATTTTC+AGG | + | chr5_4:14814502-14814521 | Msa0839680:intron | 10.0% |
!! | TGAATGAATAAAAAATAATT+TGG | + | chr5_4:14814912-14814931 | Msa0839680:intron | 10.0% |
!!! | TCGTTGATTTTTTAATTTTT+GGG | - | chr5_4:14814664-14814683 | None:intergenic | 15.0% |
!!! | ATCGTTGATTTTTTAATTTT+TGG | - | chr5_4:14814665-14814684 | None:intergenic | 15.0% |
!!! | AATTTTTTTTAGTCATTTTG+AGG | - | chr5_4:14815181-14815200 | None:intergenic | 15.0% |
!!! | TATTTCAATCATATGATTTT+GGG | - | chr5_4:14816358-14816377 | None:intergenic | 15.0% |
!!! | ATATTTCAATCATATGATTT+TGG | - | chr5_4:14816359-14816378 | None:intergenic | 15.0% |
!!! | AGTGTATTGGAATAATTTTA+TGG | - | chr5_4:14814061-14814080 | None:intergenic | 20.0% |
!! | TTACTCTATTATAAGTGTAT+TGG | - | chr5_4:14814074-14814093 | None:intergenic | 20.0% |
!!! | CGTTGATTTTTTAATTTTTG+GGG | - | chr5_4:14814663-14814682 | None:intergenic | 20.0% |
!!! | GATTTTATACAATTTTGTGT+CGG | + | chr5_4:14814703-14814722 | Msa0839680:intron | 20.0% |
!!! | TACAATTTTATGTCGATTTT+AGG | + | chr5_4:14814824-14814843 | Msa0839680:intron | 20.0% |
!!! | AAAAATAAAACTCTTTTACG+CGG | + | chr5_4:14814860-14814879 | Msa0839680:intron | 20.0% |
!! | AAATTTGCACATGAAATAAT+TGG | + | chr5_4:14814884-14814903 | Msa0839680:intron | 20.0% |
!! | ATGTTACTAAATTTAATCAG+TGG | - | chr5_4:14815337-14815356 | None:intergenic | 20.0% |
!!! | TGTTACTGAAAAATGTATTT+TGG | + | chr5_4:14815400-14815419 | Msa0839680:intron | 20.0% |
!!! | CAACTTCATTTTTTTTCTAA+AGG | + | chr5_4:14815428-14815447 | Msa0839680:intron | 20.0% |
!!! | TATAGTGATTTTTTAACATG+TGG | + | chr5_4:14815494-14815513 | Msa0839680:intron | 20.0% |
!!! | ATATTTTCCTTATTTGTTCA+GGG | + | chr5_4:14815525-14815544 | Msa0839680:intron | 20.0% |
!! | CATTTACATTATGATTTAGA+GGG | - | chr5_4:14816560-14816579 | None:intergenic | 20.0% |
!!! | ATATTTATGGTTTTGTATCG+CGG | + | chr5_4:14814207-14814226 | Msa0839680:CDS | 25.0% |
! | CTGAAAATTATTTCATTCTG+TGG | - | chr5_4:14814270-14814289 | None:intergenic | 25.0% |
!! | CAGAATGAAATAATTTTCAG+TGG | + | chr5_4:14814270-14814289 | Msa0839680:CDS | 25.0% |
! | AAAAAAGATAGATACCTGAA+TGG | - | chr5_4:14814412-14814431 | None:intergenic | 25.0% |
!!! | GATTTTTTAATTTTTGGGGT+GGG | - | chr5_4:14814659-14814678 | None:intergenic | 25.0% |
!!! | TGATTTTTTAATTTTTGGGG+TGG | - | chr5_4:14814660-14814679 | None:intergenic | 25.0% |
!!! | TTTATGTCGATTTTAGGTTT+TGG | + | chr5_4:14814830-14814849 | Msa0839680:intron | 25.0% |
!!! | GCGTAAAAGAGTTTTATTTT+TGG | - | chr5_4:14814861-14814880 | None:intergenic | 25.0% |
! | CTAAAAAAAATTCTGTGAAC+AGG | + | chr5_4:14815189-14815208 | Msa0839680:intron | 25.0% |
! | GTAACATTTGAACAATTGTT+AGG | + | chr5_4:14815350-14815369 | Msa0839680:intron | 25.0% |
!!! | CATATTTTCCTTATTTGTTC+AGG | + | chr5_4:14815524-14815543 | Msa0839680:intron | 25.0% |
! | AATAATTCCCTGAACAAATA+AGG | - | chr5_4:14815535-14815554 | None:intergenic | 25.0% |
! | AATGAATAACTGGAAGTAAA+AGG | - | chr5_4:14815736-14815755 | None:intergenic | 25.0% |
! | TGCATGAATTAATGAATAAC+TGG | - | chr5_4:14815746-14815765 | None:intergenic | 25.0% |
! | TCTATTCTAACTTGACTAAA+TGG | + | chr5_4:14815767-14815786 | Msa0839680:intron | 25.0% |
! | AGGTTATCTACCAATATATA+AGG | - | chr5_4:14816025-14816044 | None:intergenic | 25.0% |
!!! | ATCATATGATTTTGGGTTTA+GGG | - | chr5_4:14816351-14816370 | None:intergenic | 25.0% |
!!! | AATCATATGATTTTGGGTTT+AGG | - | chr5_4:14816352-14816371 | None:intergenic | 25.0% |
! | GCATTTACATTATGATTTAG+AGG | - | chr5_4:14816561-14816580 | None:intergenic | 25.0% |
! | ACTGCATTTAACAATTAACA+TGG | - | chr5_4:14816660-14816679 | None:intergenic | 25.0% |
!!! | AAATGCAGTTTACTTTTTTG+AGG | + | chr5_4:14816671-14816690 | Msa0839680:three_prime_UTR | 25.0% |
GCGATACAAAACCATAAATA+TGG | - | chr5_4:14814208-14814227 | None:intergenic | 30.0% | |
!! | ATTACTGGTTTACAGAATCT+TGG | + | chr5_4:14814318-14814337 | Msa0839680:CDS | 30.0% |
!! | CATTAATAATTTTCAGGCTC+CGG | + | chr5_4:14814508-14814527 | Msa0839680:intron | 30.0% |
ACAGCATATTCATTCTTCTT+TGG | + | chr5_4:14814563-14814582 | Msa0839680:three_prime_UTR | 30.0% | |
!!! | TACAATTTTGTGTCGGTTTT+AGG | + | chr5_4:14814710-14814729 | Msa0839680:intron | 30.0% |
AAAATGATCTACAGAAGCAA+TGG | - | chr5_4:14815091-14815110 | None:intergenic | 30.0% | |
ATAGTTCCATGAAGTGAAAT+GGG | - | chr5_4:14815115-14815134 | None:intergenic | 30.0% | |
AATAGTTCCATGAAGTGAAA+TGG | - | chr5_4:14815116-14815135 | None:intergenic | 30.0% | |
TTCACTTCATGGAACTATTA+TGG | + | chr5_4:14815117-14815136 | Msa0839680:intron | 30.0% | |
TCACTTCATGGAACTATTAT+GGG | + | chr5_4:14815118-14815137 | Msa0839680:intron | 30.0% | |
! | TCTTGCTAGGTTAATTTTAG+AGG | + | chr5_4:14815146-14815165 | Msa0839680:intron | 30.0% |
! | AAGGAATATCTGAGACAATA+TGG | - | chr5_4:14815662-14815681 | None:intergenic | 30.0% |
ATATTGTCTCAGATATTCCT+TGG | + | chr5_4:14815661-14815680 | Msa0839680:three_prime_UTR | 30.0% | |
!! | TAAGTTGTTTTCATAAGCTC+TGG | + | chr5_4:14815930-14815949 | Msa0839680:intron | 30.0% |
TATAAGGACTTGTGAACTTA+TGG | - | chr5_4:14816009-14816028 | None:intergenic | 30.0% | |
GTTCACAAGTCCTTATATAT+TGG | + | chr5_4:14816012-14816031 | Msa0839680:intron | 30.0% | |
! | TGTTTAGATTGTCTGATTTG+AGG | - | chr5_4:14816045-14816064 | None:intergenic | 30.0% |
!! | CATGTGACAAAAGTATCATA+GGG | + | chr5_4:14816155-14816174 | Msa0839680:intron | 30.0% |
!! | ATGTGACAAAAGTATCATAG+GGG | + | chr5_4:14816156-14816175 | Msa0839680:intron | 30.0% |
TGGACTTTATACTGTTATCT+GGG | + | chr5_4:14816195-14816214 | Msa0839680:three_prime_UTR | 30.0% | |
! | GCATCTTTTAAACAAAAGAC+AGG | + | chr5_4:14816217-14816236 | Msa0839680:three_prime_UTR | 30.0% |
CTTTGGTCATGAATAATAAG+TGG | - | chr5_4:14816284-14816303 | None:intergenic | 30.0% | |
! | CCATAGAGGTCATATATTTT+CGG | + | chr5_4:14816310-14816329 | Msa0839680:three_prime_UTR | 30.0% |
! | CATAGAGGTCATATATTTTC+GGG | + | chr5_4:14816311-14816330 | Msa0839680:three_prime_UTR | 30.0% |
! | ATAGAGGTCATATATTTTCG+GGG | + | chr5_4:14816312-14816331 | Msa0839680:three_prime_UTR | 30.0% |
GAATCATAGAATGTCGATAA+AGG | + | chr5_4:14816379-14816398 | Msa0839680:three_prime_UTR | 30.0% | |
TGAATCTTTGCACAATGATA+AGG | - | chr5_4:14816537-14816556 | None:intergenic | 30.0% | |
AACATTCAACACAGATTTAC+AGG | - | chr5_4:14816620-14816639 | None:intergenic | 30.0% | |
!! | AACCAGCTGTTGTTTCTTAT+CGG | + | chr5_4:14813813-14813832 | Msa0839680:CDS | 35.0% |
!! | CTGTTGTTTCTTATCGGTTT+AGG | + | chr5_4:14813819-14813838 | Msa0839680:CDS | 35.0% |
CACTCTTATCAATTTCCACT+CGG | + | chr5_4:14813928-14813947 | Msa0839680:intron | 35.0% | |
GAAATACTTAAAAGACCGAG+TGG | - | chr5_4:14813946-14813965 | None:intergenic | 35.0% | |
!! | CCTATGTGTTCTAGAAAAGA+TGG | - | chr5_4:14814006-14814025 | None:intergenic | 35.0% |
!!! | CCATCTTTTCTAGAACACAT+AGG | + | chr5_4:14814003-14814022 | Msa0839680:intron | 35.0% |
!! | GTGAATTTGCAGAGTTTTGA+AGG | + | chr5_4:14814141-14814160 | Msa0839680:CDS | 35.0% |
! | TGTTTCAGGTGCCATATTTA+TGG | + | chr5_4:14814194-14814213 | Msa0839680:CDS | 35.0% |
TCTGTATATCCTATCAACGA+TGG | - | chr5_4:14814234-14814253 | None:intergenic | 35.0% | |
TCATTCTGTGGTATAATCAC+TGG | - | chr5_4:14814258-14814277 | None:intergenic | 35.0% | |
TGGTTTACAGAATCTTGGAT+TGG | + | chr5_4:14814323-14814342 | Msa0839680:CDS | 35.0% | |
!!! | GCAGGATACTTTTTTAGTAC+CGG | - | chr5_4:14814530-14814549 | None:intergenic | 35.0% |
!! | CTTCTTTGGAGTTGTACTAA+TGG | + | chr5_4:14814577-14814596 | Msa0839680:three_prime_UTR | 35.0% |
!!! | TTTGTGTCGGTTTTAGGTTT+CGG | + | chr5_4:14814716-14814735 | Msa0839680:intron | 35.0% |
AATCAGTCATGAATAACCAG+TGG | - | chr5_4:14814966-14814985 | None:intergenic | 35.0% | |
! | ATTTTGCCCATTTCACTTCA+TGG | + | chr5_4:14815106-14815125 | Msa0839680:intron | 35.0% |
AGTCATGACTGCATAACTAA+AGG | - | chr5_4:14815565-14815584 | None:intergenic | 35.0% | |
TTAGTTATGCAGTCATGACT+TGG | + | chr5_4:14815565-14815584 | Msa0839680:three_prime_UTR | 35.0% | |
CTTGGAAGTCCAATTTACTT+GGG | + | chr5_4:14815679-14815698 | Msa0839680:three_prime_UTR | 35.0% | |
CTATACCTTCCCAAGTAAAT+TGG | - | chr5_4:14815691-14815710 | None:intergenic | 35.0% | |
!! | GAACTTGGTGAATAGTTTTG+TGG | - | chr5_4:14815793-14815812 | None:intergenic | 35.0% |
! | CCTATGATACTTTTGTCACA+TGG | - | chr5_4:14816157-14816176 | None:intergenic | 35.0% |
!! | CCATGTGACAAAAGTATCAT+AGG | + | chr5_4:14816154-14816173 | Msa0839680:intron | 35.0% |
!! | TGTGACAAAAGTATCATAGG+GGG | + | chr5_4:14816157-14816176 | Msa0839680:intron | 35.0% |
CTGGACTTTATACTGTTATC+TGG | + | chr5_4:14816194-14816213 | Msa0839680:three_prime_UTR | 35.0% | |
CCGAAAATATATGACCTCTA+TGG | - | chr5_4:14816313-14816332 | None:intergenic | 35.0% | |
CATAGAATGTCGATAAAGGA+CGG | + | chr5_4:14816383-14816402 | Msa0839680:three_prime_UTR | 35.0% | |
TCTTTGCACAATGATAAGGT+TGG | - | chr5_4:14816533-14816552 | None:intergenic | 35.0% | |
GTAAATGCCTTGTAAAAGAC+TGG | + | chr5_4:14816573-14816592 | Msa0839680:three_prime_UTR | 35.0% | |
AACCGATAAGAAACAACAGC+TGG | - | chr5_4:14813818-14813837 | None:intergenic | 40.0% | |
CAGAAAGGTAAAGACAGGAT+CGG | - | chr5_4:14813883-14813902 | None:intergenic | 40.0% | |
!! | TTTCTGCTTGCTGTGATCAT+GGG | + | chr5_4:14813897-14813916 | Msa0839680:CDS | 40.0% |
!!! | TTTGCAGAGTTTTGAAGGTC+TGG | + | chr5_4:14814146-14814165 | Msa0839680:CDS | 40.0% |
GGGACTGTTATATGTGTTTC+AGG | + | chr5_4:14814180-14814199 | Msa0839680:CDS | 40.0% | |
! | GGATTGGACAATTTTGAGCT+TGG | + | chr5_4:14814339-14814358 | Msa0839680:CDS | 40.0% |
CTTGGAGTTGTGTTCTTGAT+AGG | + | chr5_4:14814357-14814376 | Msa0839680:CDS | 40.0% | |
GATAGTCTCGTTATTCACAG+TGG | + | chr5_4:14814601-14814620 | Msa0839680:intron | 40.0% | |
TGATCCAAATTCCCGTAAAG+TGG | + | chr5_4:14814740-14814759 | Msa0839680:intron | 40.0% | |
TACACCACTTTACGGGAATT+TGG | - | chr5_4:14814747-14814766 | None:intergenic | 40.0% | |
! | CTAGAAAATATTCTGGGGGT+GGG | - | chr5_4:14814938-14814957 | None:intergenic | 40.0% |
GGAGCTAGAAAATATTCTGG+GGG | - | chr5_4:14814942-14814961 | None:intergenic | 40.0% | |
CGGAGCTAGAAAATATTCTG+GGG | - | chr5_4:14814943-14814962 | None:intergenic | 40.0% | |
GCGGAGCTAGAAAATATTCT+GGG | - | chr5_4:14814944-14814963 | None:intergenic | 40.0% | |
!! | TGACTGATTTGTCAAGTGAC+TGG | + | chr5_4:14814977-14814996 | Msa0839680:three_prime_UTR | 40.0% |
! | ATTATGGGCATTGTCTTGCT+AGG | + | chr5_4:14815133-14815152 | Msa0839680:intron | 40.0% |
AATTCTGTGAACAGGCAACA+AGG | + | chr5_4:14815197-14815216 | Msa0839680:intron | 40.0% | |
GCTGGAGCAACAAGATATTA+GGG | + | chr5_4:14815590-14815609 | Msa0839680:three_prime_UTR | 40.0% | |
AGGTTGAAGTGGAACGTAAA+GGG | - | chr5_4:14815629-14815648 | None:intergenic | 40.0% | |
CCAAGTAAATTGGACTTCCA+AGG | - | chr5_4:14815681-14815700 | None:intergenic | 40.0% | |
CCTTGGAAGTCCAATTTACT+TGG | + | chr5_4:14815678-14815697 | Msa0839680:three_prime_UTR | 40.0% | |
GAAGTCCAATTTACTTGGGA+AGG | + | chr5_4:14815683-14815702 | Msa0839680:three_prime_UTR | 40.0% | |
TAGCGCAATCTGTTTGAACT+TGG | - | chr5_4:14815808-14815827 | None:intergenic | 40.0% | |
TCAAACAGATTGCGCTAGAT+TGG | + | chr5_4:14815811-14815830 | Msa0839680:intron | 40.0% | |
!! | GTGACAAAAGTATCATAGGG+GGG | + | chr5_4:14816158-14816177 | Msa0839680:intron | 40.0% |
AACAAAAGACAGGCAACTGT+TGG | + | chr5_4:14816227-14816246 | Msa0839680:three_prime_UTR | 40.0% | |
TCTTATCTCTACAAGCAGAG+AGG | + | chr5_4:14816464-14816483 | Msa0839680:three_prime_UTR | 40.0% | |
! | CACAGAACCAGTCTTTTACA+AGG | - | chr5_4:14816583-14816602 | None:intergenic | 40.0% |
GCAAGCAGAAAGGTAAAGAC+AGG | - | chr5_4:14813888-14813907 | None:intergenic | 45.0% | |
CATGATCACAGCAAGCAGAA+AGG | - | chr5_4:14813898-14813917 | None:intergenic | 45.0% | |
!! | CTTTCTGCTTGCTGTGATCA+TGG | + | chr5_4:14813896-14813915 | Msa0839680:CDS | 45.0% |
!! | TTCTGCTTGCTGTGATCATG+GGG | + | chr5_4:14813898-14813917 | Msa0839680:CDS | 45.0% |
!!! | GAGTTTTGAAGGTCTGGCAA+AGG | + | chr5_4:14814152-14814171 | Msa0839680:CDS | 45.0% |
TTTGAAGGTCTGGCAAAGGT+TGG | + | chr5_4:14814156-14814175 | Msa0839680:CDS | 45.0% | |
CCAGTAATCAACCATCCAGA+AGG | - | chr5_4:14814306-14814325 | None:intergenic | 45.0% | |
CCTTCTGGATGGTTGATTAC+TGG | + | chr5_4:14814303-14814322 | Msa0839680:CDS | 45.0% | |
GCTGTCACAGATAGATATGC+AGG | - | chr5_4:14814548-14814567 | None:intergenic | 45.0% | |
AGTCTCGTTATTCACAGTGG+CGG | + | chr5_4:14814604-14814623 | Msa0839680:intron | 45.0% | |
ATTCCCGTAAAGTGGTGTAG+TGG | + | chr5_4:14814748-14814767 | Msa0839680:intron | 45.0% | |
TGAGCCACTACACCACTTTA+CGG | - | chr5_4:14814755-14814774 | None:intergenic | 45.0% | |
! | GCTAGAAAATATTCTGGGGG+TGG | - | chr5_4:14814939-14814958 | None:intergenic | 45.0% |
GGCGGAGCTAGAAAATATTC+TGG | - | chr5_4:14814945-14814964 | None:intergenic | 45.0% | |
!!! | ATATTTTCTAGCTCCGCCAC+TGG | + | chr5_4:14814947-14814966 | Msa0839680:intron | 45.0% |
CAGTCATGAATAACCAGTGG+CGG | - | chr5_4:14814963-14814982 | None:intergenic | 45.0% | |
! | GTTATGCAGTCATGACTTGG+AGG | + | chr5_4:14815568-14815587 | Msa0839680:three_prime_UTR | 45.0% |
GGCTGGAGCAACAAGATATT+AGG | + | chr5_4:14815589-14815608 | Msa0839680:three_prime_UTR | 45.0% | |
CAAGATATTAGGGCCAACTC+TGG | + | chr5_4:14815600-14815619 | Msa0839680:three_prime_UTR | 45.0% | |
! | CAGGTTGAAGTGGAACGTAA+AGG | - | chr5_4:14815630-14815649 | None:intergenic | 45.0% |
CTTTACGTTCCACTTCAACC+TGG | + | chr5_4:14815628-14815647 | Msa0839680:three_prime_UTR | 45.0% | |
GACAATATGGCAGCAAATCC+AGG | - | chr5_4:14815649-14815668 | None:intergenic | 45.0% | |
CTTGTCGACATGTCATTAGC+TGG | + | chr5_4:14815981-14816000 | Msa0839680:intron | 45.0% | |
!! | CATATATTTTCGGGGTCCTC+CGG | + | chr5_4:14816320-14816339 | Msa0839680:three_prime_UTR | 45.0% |
!!! | TTGAATTATTTAAATTTTTT+GGG | - | chr5_4:14814778-14814797 | None:intergenic | 5.0% |
!!! | ATTGAATTATTTAAATTTTT+TGG | - | chr5_4:14814779-14814798 | None:intergenic | 5.0% |
!!! | AAACATTTTTTATATTATAA+GGG | - | chr5_4:14815875-14815894 | None:intergenic | 5.0% |
!!! | TAAACATTTTTTATATTATA+AGG | - | chr5_4:14815876-14815895 | None:intergenic | 5.0% |
AAGGTAAAGACAGGATCGGC+AGG | - | chr5_4:14813879-14813898 | None:intergenic | 50.0% | |
AAGGTCTGGCAAAGGTTGGA+GGG | + | chr5_4:14814160-14814179 | Msa0839680:CDS | 50.0% | |
TATCGCGGTCCATCGTTGAT+AGG | + | chr5_4:14814222-14814241 | Msa0839680:CDS | 50.0% | |
ATCAACCATCCAGAAGGCTC+TGG | - | chr5_4:14814300-14814319 | None:intergenic | 50.0% | |
! | GGCTGCTTTCTAAGCCATTC+AGG | + | chr5_4:14814395-14814414 | Msa0839680:exon | 50.0% |
!!! | TTAATTTTTGGGGTGGGCCG+TGG | - | chr5_4:14814653-14814672 | None:intergenic | 50.0% |
GAGCCACTACACCACTTTAC+GGG | - | chr5_4:14814754-14814773 | None:intergenic | 50.0% | |
ACGTAAAGGGCAACCAGAGT+TGG | - | chr5_4:14815616-14815635 | None:intergenic | 50.0% | |
! | GCAGCAAATCCAGGTTGAAG+TGG | - | chr5_4:14815640-14815659 | None:intergenic | 50.0% |
GACCAAAGTGCACACCATAG+AGG | + | chr5_4:14816296-14816315 | Msa0839680:three_prime_UTR | 50.0% | |
GACCTCTATGGTGTGCACTT+TGG | - | chr5_4:14816301-14816320 | None:intergenic | 50.0% | |
!!! | TTTTGGGTTTAGGGATGCGC+CGG | - | chr5_4:14816342-14816361 | None:intergenic | 50.0% |
TGGTTGAAGGCTCGTACACT+AGG | - | chr5_4:14816409-14816428 | None:intergenic | 50.0% | |
TGTAAGGCAGCGGCGTAAGT+TGG | - | chr5_4:14813855-14813874 | None:intergenic | 55.0% | |
GAAGGTCTGGCAAAGGTTGG+AGG | + | chr5_4:14814159-14814178 | Msa0839680:CDS | 55.0% | |
GATAGGCAACTGCACGTGCA+TGG | + | chr5_4:14814374-14814393 | Msa0839680:CDS | 55.0% | |
! | TGCAGTCATGACTTGGAGGC+TGG | + | chr5_4:14815572-14815591 | Msa0839680:three_prime_UTR | 55.0% |
GGGGGGTCTTTGATCATTGC+TGG | + | chr5_4:14816175-14816194 | Msa0839680:three_prime_UTR | 55.0% | |
GACTCCACTCGCTTGGTTGA+AGG | - | chr5_4:14816422-14816441 | None:intergenic | 55.0% | |
TCAACCAAGCGAGTGGAGTC+TGG | + | chr5_4:14816422-14816441 | Msa0839680:three_prime_UTR | 55.0% | |
CAACCAAGCGAGTGGAGTCT+GGG | + | chr5_4:14816423-14816442 | Msa0839680:three_prime_UTR | 55.0% | |
TTTCCCAGACTCCACTCGCT+TGG | - | chr5_4:14816429-14816448 | None:intergenic | 55.0% | |
ATCGGCAGGCTGTAAGGCAG+CGG | - | chr5_4:14813865-14813884 | None:intergenic | 60.0% | |
GACAGGATCGGCAGGCTGTA+AGG | - | chr5_4:14813871-14813890 | None:intergenic | 60.0% | |
AGTGGTCAGCCAGAGCCTTC+TGG | + | chr5_4:14814288-14814307 | Msa0839680:CDS | 60.0% | |
GTCAGCCAGAGCCTTCTGGA+TGG | + | chr5_4:14814292-14814311 | Msa0839680:CDS | 60.0% | |
! | ACAGTGGCGGAGCCCTTCAT+GGG | + | chr5_4:14814617-14814636 | Msa0839680:intron | 60.0% |
! | AGCCCTTCATGGGCTGAGGT+GGG | + | chr5_4:14814627-14814646 | Msa0839680:intron | 60.0% |
CGAGCCTTCAACCAAGCGAG+TGG | + | chr5_4:14816415-14816434 | Msa0839680:three_prime_UTR | 60.0% | |
! | CACAGTGGCGGAGCCCTTCA+TGG | + | chr5_4:14814616-14814635 | Msa0839680:intron | 65.0% |
! | GAGCCCTTCATGGGCTGAGG+TGG | + | chr5_4:14814626-14814645 | Msa0839680:intron | 65.0% |
GGCCCACCTCAGCCCATGAA+GGG | - | chr5_4:14814632-14814651 | None:intergenic | 65.0% | |
TGGCCCACCTCAGCCCATGA+AGG | - | chr5_4:14814633-14814652 | None:intergenic | 65.0% | |
! | TCATGGGCTGAGGTGGGCCA+CGG | + | chr5_4:14814633-14814652 | Msa0839680:intron | 65.0% |
TGGGTTTAGGGATGCGCCGG+AGG | - | chr5_4:14816339-14816358 | None:intergenic | 65.0% | |
! | GCGGAGCCCTTCATGGGCTG+AGG | + | chr5_4:14814623-14814642 | Msa0839680:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 14813795 | 14816699 | 14813795 | ID=Msa0839680;Name=Msa0839680 |
chr5_4 | mRNA | 14813795 | 14816699 | 14813795 | ID=Msa0839680-mRNA-1;Parent=Msa0839680;Name=Msa0839680-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|1|0.83|1|0.4|0.33|6|856|133 |
chr5_4 | exon | 14813795 | 14813919 | 14813795 | ID=Msa0839680-mRNA-1:exon:6461;Parent=Msa0839680-mRNA-1 |
chr5_4 | exon | 14814131 | 14814416 | 14814131 | ID=Msa0839680-mRNA-1:exon:6462;Parent=Msa0839680-mRNA-1 |
chr5_4 | exon | 14814524 | 14814609 | 14814524 | ID=Msa0839680-mRNA-1:exon:6463;Parent=Msa0839680-mRNA-1 |
chr5_4 | exon | 14814969 | 14815038 | 14814969 | ID=Msa0839680-mRNA-1:exon:6464;Parent=Msa0839680-mRNA-1 |
chr5_4 | exon | 14815546 | 14815704 | 14815546 | ID=Msa0839680-mRNA-1:exon:6465;Parent=Msa0839680-mRNA-1 |
chr5_4 | exon | 14816168 | 14816699 | 14816168 | ID=Msa0839680-mRNA-1:exon:6466;Parent=Msa0839680-mRNA-1 |
chr5_4 | CDS | 14813795 | 14813919 | 14813795 | ID=Msa0839680-mRNA-1:cds;Parent=Msa0839680-mRNA-1 |
chr5_4 | CDS | 14814131 | 14814407 | 14814131 | ID=Msa0839680-mRNA-1:cds;Parent=Msa0839680-mRNA-1 |
chr5_4 | three_prime_UTR | 14814408 | 14814416 | 14814408 | ID=Msa0839680-mRNA-1:three_prime_utr;Parent=Msa0839680-mRNA-1 |
chr5_4 | three_prime_UTR | 14814524 | 14814609 | 14814524 | ID=Msa0839680-mRNA-1:three_prime_utr;Parent=Msa0839680-mRNA-1 |
chr5_4 | three_prime_UTR | 14814969 | 14815038 | 14814969 | ID=Msa0839680-mRNA-1:three_prime_utr;Parent=Msa0839680-mRNA-1 |
chr5_4 | three_prime_UTR | 14815546 | 14815704 | 14815546 | ID=Msa0839680-mRNA-1:three_prime_utr;Parent=Msa0839680-mRNA-1 |
chr5_4 | three_prime_UTR | 14816168 | 14816699 | 14816168 | ID=Msa0839680-mRNA-1:three_prime_utr;Parent=Msa0839680-mRNA-1 |
Gene Sequence |
Protein sequence |