Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439930 | XP_003609685.2 | 96.694 | 121 | 4 | 0 | 1 | 121 | 1 | 121 | 7.29e-74 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439930 | G7JLI7 | 96.694 | 121 | 4 | 0 | 1 | 121 | 1 | 121 | 3.48e-74 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa1439930 | -0.806598 | 7.609417e-50 | -8.615850e-47 |
| Msa0011440 | Msa1439930 | -0.801861 | 7.371965e-49 | -8.615850e-47 |
| Msa0013270 | Msa1439930 | 0.812624 | 3.860449e-51 | -8.615850e-47 |
| Msa0025570 | Msa1439930 | 0.802204 | 6.268738e-49 | -8.615850e-47 |
| Msa0038150 | Msa1439930 | -0.801882 | 7.299868e-49 | -8.615850e-47 |
| Msa0044530 | Msa1439930 | -0.802485 | 5.486752e-49 | -8.615850e-47 |
| Msa0045810 | Msa1439930 | 0.823230 | 1.548703e-53 | -8.615850e-47 |
| Msa0046200 | Msa1439930 | 0.808159 | 3.551231e-50 | -8.615850e-47 |
| Msa0062190 | Msa1439930 | 0.815711 | 8.035706e-52 | -8.615850e-47 |
| Msa0063940 | Msa1439930 | 0.868865 | 4.751480e-66 | -8.615850e-47 |
| Msa0073110 | Msa1439930 | 0.814792 | 1.286053e-51 | -8.615850e-47 |
| Msa0074690 | Msa1439930 | 0.801353 | 9.371369e-49 | -8.615850e-47 |
| Msa0091240 | Msa1439930 | -0.801162 | 1.025616e-48 | -8.615850e-47 |
| Msa0095810 | Msa1439930 | -0.805773 | 1.135516e-49 | -8.615850e-47 |
| Msa0101530 | Msa1439930 | 0.801260 | 9.792276e-49 | -8.615850e-47 |
| Msa0106540 | Msa1439930 | 0.807569 | 4.740428e-50 | -8.615850e-47 |
| Msa1348170 | Msa1439930 | -0.803795 | 2.938948e-49 | -8.615850e-47 |
| Msa1354360 | Msa1439930 | -0.812182 | 4.822587e-51 | -8.615850e-47 |
| Msa1354370 | Msa1439930 | -0.806292 | 8.828641e-50 | -8.615850e-47 |
| Msa1354400 | Msa1439930 | -0.806587 | 7.651452e-50 | -8.615850e-47 |
| Msa1354520 | Msa1439930 | -0.811509 | 6.756322e-51 | -8.615850e-47 |
| Msa1354530 | Msa1439930 | -0.807124 | 5.892831e-50 | -8.615850e-47 |
| Msa1354650 | Msa1439930 | -0.809898 | 1.506790e-50 | -8.615850e-47 |
| Msa1354660 | Msa1439930 | -0.809383 | 1.944219e-50 | -8.615850e-47 |
| Msa1354780 | Msa1439930 | -0.805309 | 1.420873e-49 | -8.615850e-47 |
| Msa1354790 | Msa1439930 | -0.810643 | 1.040805e-50 | -8.615850e-47 |
| Msa1354960 | Msa1439930 | -0.812056 | 5.137435e-51 | -8.615850e-47 |
| Msa1365990 | Msa1439930 | -0.800659 | 1.299072e-48 | -8.615850e-47 |
| Msa1366020 | Msa1439930 | -0.806452 | 8.171635e-50 | -8.615850e-47 |
| Msa1366030 | Msa1439930 | -0.804550 | 2.046669e-49 | -8.615850e-47 |
| Msa1366060 | Msa1439930 | -0.808350 | 3.233398e-50 | -8.615850e-47 |
| Msa1368260 | Msa1439930 | -0.806790 | 6.932988e-50 | -8.615850e-47 |
| Msa1368390 | Msa1439930 | 0.806002 | 1.016272e-49 | -8.615850e-47 |
| Msa1384700 | Msa1439930 | 0.840346 | 9.188218e-58 | -8.615850e-47 |
| Msa1385360 | Msa1439930 | -0.800977 | 1.118686e-48 | -8.615850e-47 |
| Msa1385390 | Msa1439930 | -0.803667 | 3.125076e-49 | -8.615850e-47 |
| Msa1391130 | Msa1439930 | -0.805224 | 1.480339e-49 | -8.615850e-47 |
| Msa1391140 | Msa1439930 | -0.804040 | 2.614656e-49 | -8.615850e-47 |
| Msa1391260 | Msa1439930 | -0.804100 | 2.540036e-49 | -8.615850e-47 |
| Msa1396200 | Msa1439930 | -0.828736 | 7.617592e-55 | -8.615850e-47 |
| Msa1405530 | Msa1439930 | 0.810864 | 9.323116e-51 | -8.615850e-47 |
| Msa1405830 | Msa1439930 | 0.808123 | 3.614717e-50 | -8.615850e-47 |
| Msa1407810 | Msa1439930 | 0.802897 | 4.511582e-49 | -8.615850e-47 |
| Msa1422860 | Msa1439930 | 0.842437 | 2.587907e-58 | -8.615850e-47 |
| Msa1428230 | Msa1439930 | -0.804797 | 1.817699e-49 | -8.615850e-47 |
| Msa1433360 | Msa1439930 | 0.819694 | 1.015302e-52 | -8.615850e-47 |
| Msa1437780 | Msa1439930 | 0.803320 | 3.688023e-49 | -8.615850e-47 |
| Msa1439250 | Msa1439930 | 0.800781 | 1.226706e-48 | -8.615850e-47 |
| Msa1439930 | Msa1445530 | 0.819691 | 1.016783e-52 | -8.615850e-47 |
| Msa1439930 | Msa1457770 | 0.802739 | 4.863733e-49 | -8.615850e-47 |
| Msa1439930 | Msa1459130 | -0.829670 | 4.519802e-55 | -8.615850e-47 |
| Msa0610690 | Msa1439930 | 0.829918 | 3.934168e-55 | -8.615850e-47 |
| Msa0616890 | Msa1439930 | -0.807382 | 5.193779e-50 | -8.615850e-47 |
| Msa0636540 | Msa1439930 | 0.820506 | 6.615690e-53 | -8.615850e-47 |
| Msa0657710 | Msa1439930 | 0.830134 | 3.483428e-55 | -8.615850e-47 |
| Msa0675630 | Msa1439930 | 0.815436 | 9.252091e-52 | -8.615850e-47 |
| Msa0676570 | Msa1439930 | -0.819120 | 1.372055e-52 | -8.615850e-47 |
| Msa0701800 | Msa1439930 | -0.827207 | 1.776750e-54 | -8.615850e-47 |
| Msa0702800 | Msa1439930 | 0.834517 | 2.862773e-56 | -8.615850e-47 |
| Msa0742370 | Msa1439930 | -0.865121 | 7.428192e-65 | -8.615850e-47 |
| Msa0779450 | Msa1439930 | -0.840050 | 1.098178e-57 | -8.615850e-47 |
| Msa0795750 | Msa1439930 | 0.822989 | 1.763461e-53 | -8.615850e-47 |
| Msa0807870 | Msa1439930 | -0.804703 | 1.902160e-49 | -8.615850e-47 |
| Msa0823480 | Msa1439930 | -0.814124 | 1.807059e-51 | -8.615850e-47 |
| Msa0828950 | Msa1439930 | 0.803391 | 3.565167e-49 | -8.615850e-47 |
| Msa0828960 | Msa1439930 | 0.831535 | 1.579747e-55 | -8.615850e-47 |
| Msa0839680 | Msa1439930 | 0.819345 | 1.219385e-52 | -8.615850e-47 |
| Msa0121300 | Msa1439930 | 0.805535 | 1.273863e-49 | -8.615850e-47 |
| Msa0121320 | Msa1439930 | 0.812601 | 3.904890e-51 | -8.615850e-47 |
| Msa0136180 | Msa1439930 | -0.801970 | 7.001672e-49 | -8.615850e-47 |
| Msa0139500 | Msa1439930 | 0.813404 | 2.603582e-51 | -8.615850e-47 |
| Msa0151380 | Msa1439930 | -0.804144 | 2.486957e-49 | -8.615850e-47 |
| Msa0154890 | Msa1439930 | -0.803987 | 2.680913e-49 | -8.615850e-47 |
| Msa0166190 | Msa1439930 | 0.807956 | 3.923892e-50 | -8.615850e-47 |
| Msa0204140 | Msa1439930 | 0.802603 | 5.188279e-49 | -8.615850e-47 |
| Msa0217060 | Msa1439930 | 0.804033 | 2.622725e-49 | -8.615850e-47 |
| Msa0234150 | Msa1439930 | 0.813066 | 3.089459e-51 | -8.615850e-47 |
| Msa1242160 | Msa1439930 | 0.802468 | 5.531564e-49 | -8.615850e-47 |
| Msa1246830 | Msa1439930 | 0.804793 | 1.821556e-49 | -8.615850e-47 |
| Msa1251410 | Msa1439930 | 0.802176 | 6.353138e-49 | -8.615850e-47 |
| Msa1255210 | Msa1439930 | 0.820140 | 8.026615e-53 | -8.615850e-47 |
| Msa1257610 | Msa1439930 | 0.818893 | 1.545066e-52 | -8.615850e-47 |
| Msa1283930 | Msa1439930 | 0.832285 | 1.031637e-55 | -8.615850e-47 |
| Msa1284020 | Msa1439930 | 0.834185 | 3.468473e-56 | -8.615850e-47 |
| Msa1295650 | Msa1439930 | 0.819665 | 1.030857e-52 | -8.615850e-47 |
| Msa1301280 | Msa1439930 | -0.821982 | 3.022520e-53 | -8.615850e-47 |
| Msa1303550 | Msa1439930 | 0.801524 | 8.645676e-49 | -8.615850e-47 |
| Msa1322960 | Msa1439930 | 0.828851 | 7.143555e-55 | -8.615850e-47 |
| Msa1323070 | Msa1439930 | 0.808083 | 3.687079e-50 | -8.615850e-47 |
| Msa1331570 | Msa1439930 | -0.857972 | 1.133425e-62 | -8.615850e-47 |
| Msa0364910 | Msa1439930 | -0.807394 | 5.165408e-50 | -8.615850e-47 |
| Msa0365210 | Msa1439930 | 0.801560 | 8.498602e-49 | -8.615850e-47 |
| Msa0375790 | Msa1439930 | 0.821173 | 4.646585e-53 | -8.615850e-47 |
| Msa0388210 | Msa1439930 | 0.808212 | 3.460922e-50 | -8.615850e-47 |
| Msa0399820 | Msa1439930 | 0.802712 | 4.924872e-49 | -8.615850e-47 |
| Msa0401860 | Msa1439930 | -0.801743 | 7.796317e-49 | -8.615850e-47 |
| Msa0405460 | Msa1439930 | -0.818011 | 2.448338e-52 | -8.615850e-47 |
| Msa0405470 | Msa1439930 | -0.805925 | 1.055113e-49 | -8.615850e-47 |
| Msa0405550 | Msa1439930 | -0.811901 | 5.550911e-51 | -8.615850e-47 |
| Msa0412580 | Msa1439930 | -0.821623 | 3.658593e-53 | -8.615850e-47 |
| Msa0437440 | Msa1439930 | -0.819502 | 1.122748e-52 | -8.615850e-47 |
| Msa0437520 | Msa1439930 | 0.800303 | 1.535566e-48 | -8.615850e-47 |
| Msa0457070 | Msa1439930 | -0.814383 | 1.584352e-51 | -8.615850e-47 |
| Msa0480900 | Msa1439930 | -0.833262 | 5.898578e-56 | -8.615850e-47 |
| Msa0983600 | Msa1439930 | -0.809559 | 1.782496e-50 | -8.615850e-47 |
| Msa0983610 | Msa1439930 | -0.809462 | 1.870044e-50 | -8.615850e-47 |
| Msa1015360 | Msa1439930 | 0.839744 | 1.319418e-57 | -8.615850e-47 |
| Msa1022420 | Msa1439930 | 0.819090 | 1.394034e-52 | -8.615850e-47 |
| Msa1039440 | Msa1439930 | -0.803559 | 3.291021e-49 | -8.615850e-47 |
| Msa1044250 | Msa1439930 | 0.850799 | 1.344142e-60 | -8.615850e-47 |
| Msa1075090 | Msa1439930 | 0.806966 | 6.362184e-50 | -8.615850e-47 |
| Msa1086770 | Msa1439930 | -0.807974 | 3.888161e-50 | -8.615850e-47 |
| Msa1086940 | Msa1439930 | -0.804034 | 2.621761e-49 | -8.615850e-47 |
| Msa1087070 | Msa1439930 | -0.807312 | 5.374061e-50 | -8.615850e-47 |
| Msa1087090 | Msa1439930 | -0.809148 | 2.183272e-50 | -8.615850e-47 |
| Msa1106590 | Msa1439930 | 0.813700 | 2.241400e-51 | -8.615850e-47 |
| Msa0241750 | Msa1439930 | 0.818369 | 2.031662e-52 | -8.615850e-47 |
| Msa0256920 | Msa1439930 | 0.822129 | 2.793622e-53 | -8.615850e-47 |
| Msa0269170 | Msa1439930 | -0.809398 | 1.930356e-50 | -8.615850e-47 |
| Msa0282960 | Msa1439930 | 0.803034 | 4.225612e-49 | -8.615850e-47 |
| Msa0285890 | Msa1439930 | 0.806870 | 6.668423e-50 | -8.615850e-47 |
| Msa0287480 | Msa1439930 | 0.825364 | 4.879882e-54 | -8.615850e-47 |
| Msa0308750 | Msa1439930 | 0.816840 | 4.494516e-52 | -8.615850e-47 |
| Msa0316740 | Msa1439930 | 0.815419 | 9.334846e-52 | -8.615850e-47 |
| Msa0318490 | Msa1439930 | 0.807788 | 4.259767e-50 | -8.615850e-47 |
| Msa0326170 | Msa1439930 | -0.812172 | 4.845524e-51 | -8.615850e-47 |
| Msa0334320 | Msa1439930 | 0.825234 | 5.237123e-54 | -8.615850e-47 |
| Msa0355080 | Msa1439930 | -0.800731 | 1.255769e-48 | -8.615850e-47 |
| Msa0356270 | Msa1439930 | 0.808232 | 3.427112e-50 | -8.615850e-47 |
| Msa1154060 | Msa1439930 | 0.802634 | 5.110825e-49 | -8.615850e-47 |
| Msa1156720 | Msa1439930 | 0.806705 | 7.223297e-50 | -8.615850e-47 |
| Msa1165460 | Msa1439930 | 0.806918 | 6.514163e-50 | -8.615850e-47 |
| Msa1191530 | Msa1439930 | -0.802320 | 5.932825e-49 | -8.615850e-47 |
| Msa1192360 | Msa1439930 | 0.829930 | 3.906459e-55 | -8.615850e-47 |
| Msa1197720 | Msa1439930 | 0.806910 | 6.537945e-50 | -8.615850e-47 |
| Msa1202800 | Msa1439930 | 0.825476 | 4.592024e-54 | -8.615850e-47 |
| Msa1205270 | Msa1439930 | -0.801817 | 7.529475e-49 | -8.615850e-47 |
| Msa1207390 | Msa1439930 | 0.815130 | 1.082151e-51 | -8.615850e-47 |
| Msa1207430 | Msa1439930 | 0.806749 | 7.072087e-50 | -8.615850e-47 |
| Msa1207920 | Msa1439930 | -0.847993 | 8.132613e-60 | -8.615850e-47 |
| Msa1221270 | Msa1439930 | 0.817108 | 3.912260e-52 | -8.615850e-47 |
| Msa0483970 | Msa1439930 | -0.814288 | 1.662705e-51 | -8.615850e-47 |
| Msa0525180 | Msa1439930 | -0.810077 | 1.379232e-50 | -8.615850e-47 |
| Msa0567330 | Msa1439930 | 0.817072 | 3.985413e-52 | -8.615850e-47 |
| Msa0570600 | Msa1439930 | 0.806309 | 8.756110e-50 | -8.615850e-47 |
| Msa0576320 | Msa1439930 | 0.806872 | 6.660149e-50 | -8.615850e-47 |
| Msa0579080 | Msa1439930 | 0.806827 | 6.808766e-50 | -8.615850e-47 |
| Msa0579160 | Msa1439930 | 0.821894 | 3.168013e-53 | -8.615850e-47 |
| Msa0579220 | Msa1439930 | 0.822127 | 2.796760e-53 | -8.615850e-47 |
| Msa0581350 | Msa1439930 | 0.811570 | 6.553904e-51 | -8.615850e-47 |
| Msa0590620 | Msa1439930 | -0.836452 | 9.280958e-57 | -8.615850e-47 |
| Msa0597180 | Msa1439930 | 0.813781 | 2.151412e-51 | -8.615850e-47 |
| Msa0862480 | Msa1439930 | -0.850970 | 1.203430e-60 | -8.615850e-47 |
| Msa0867660 | Msa1439930 | -0.806957 | 6.390079e-50 | -8.615850e-47 |
| Msa0880910 | Msa1439930 | 0.823769 | 1.158794e-53 | -8.615850e-47 |
| Msa0905570 | Msa1439930 | 0.813989 | 1.935421e-51 | -8.615850e-47 |
| Msa0908260 | Msa1439930 | -0.803551 | 3.302918e-49 | -8.615850e-47 |
| Msa0908270 | Msa1439930 | -0.808179 | 3.516971e-50 | -8.615850e-47 |
| Msa0908280 | Msa1439930 | -0.809942 | 1.474228e-50 | -8.615850e-47 |
| Msa0908470 | Msa1439930 | -0.808050 | 3.746804e-50 | -8.615850e-47 |
| Msa0908500 | Msa1439930 | -0.807277 | 5.467347e-50 | -8.615850e-47 |
| Msa0908510 | Msa1439930 | -0.804609 | 1.989894e-49 | -8.615850e-47 |
| Msa0908630 | Msa1439930 | -0.805526 | 1.279415e-49 | -8.615850e-47 |
| Msa0908690 | Msa1439930 | -0.807423 | 5.090996e-50 | -8.615850e-47 |
| Msa0908700 | Msa1439930 | -0.803351 | 3.633055e-49 | -8.615850e-47 |
| Msa0909260 | Msa1439930 | 0.830944 | 2.207017e-55 | -8.615850e-47 |
| Msa0924900 | Msa1439930 | -0.804407 | 2.192718e-49 | -8.615850e-47 |
| Msa0930770 | Msa1439930 | 0.802728 | 4.888543e-49 | -8.615850e-47 |
| Msa0964400 | Msa1439930 | -0.800882 | 1.169859e-48 | -8.615850e-47 |
| Msa0967780 | Msa1439930 | 0.828186 | 1.034020e-54 | -8.615850e-47 |
| Msa0973080 | Msa1439930 | -0.817899 | 2.594952e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439930 | MtrunA17_Chr4g0067451 | 96.694 | 121 | 4 | 0 | 1 | 121 | 1 | 121 | 6.71e-78 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439930 | AT3G06890.1 | 75.591 | 127 | 25 | 1 | 1 | 121 | 1 | 127 | 1.55e-31 | 108 |
Find 33 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCACCTTGTTGTCTTTC+TGG | 0.014264 | tig0028916:-3655 | None:intergenic |
| GTAATAGTTCCTTTCCTTCT+CGG | 0.355214 | tig0028916:+3724 | Msa1439930:CDS |
| AGGTTCACCGGTGGAGAAAA+TGG | 0.355541 | tig0028916:-3875 | None:intergenic |
| TGGAACCGTGTTTCGATCTT+CGG | 0.370599 | tig0028916:+3970 | Msa1439930:CDS |
| GATACTATTCATCGTGTTAG+TGG | 0.389930 | tig0028916:+3898 | Msa1439930:CDS |
| CCTTTCCTTCTCGGAGATCA+AGG | 0.391728 | tig0028916:+3733 | Msa1439930:CDS |
| AGCTATCACAGAAGCTATAT+CGG | 0.433454 | tig0028916:+3759 | Msa1439930:CDS |
| CTAACACGATGAATAGTATC+AGG | 0.440753 | tig0028916:-3895 | None:intergenic |
| AGCAGTGGTGGTAGCTATAG+TGG | 0.468105 | tig0028916:+3702 | Msa1439930:CDS |
| ATCGTGAGAAGAAGGATGAT+TGG | 0.488963 | tig0028916:-3814 | None:intergenic |
| GGAACTGAATCGTGAGAAGA+AGG | 0.507982 | tig0028916:-3822 | None:intergenic |
| GAAAGACAACAAGGTGGTGG+AGG | 0.540517 | tig0028916:+3658 | Msa1439930:CDS |
| CGTGTTAGTGGATCACCGTT+CGG | 0.558827 | tig0028916:+3910 | Msa1439930:CDS |
| CCTTGATCTCCGAGAAGGAA+AGG | 0.562958 | tig0028916:-3733 | None:intergenic |
| CCAGAAAGACAACAAGGTGG+TGG | 0.583317 | tig0028916:+3655 | Msa1439930:CDS |
| ATGAATAGTATCAGGTTCAC+CGG | 0.583799 | tig0028916:-3887 | None:intergenic |
| TCGGAGCTGCTAAGTCCACT+TGG | 0.597655 | tig0028916:+3778 | Msa1439930:CDS |
| AACCGTGTTTCGATCTTCGG+TGG | 0.599415 | tig0028916:+3973 | Msa1439930:CDS |
| CGGTATTCTTCTAGCAGTGG+TGG | 0.606734 | tig0028916:+3690 | Msa1439930:CDS |
| CTTCGCCTTGATCTCCGAGA+AGG | 0.615486 | tig0028916:-3738 | None:intergenic |
| AGGAAAAGAGCAACACCGAA+CGG | 0.621281 | tig0028916:-3925 | None:intergenic |
| CAGTTCCTCTCATCTGAACG+TGG | 0.622156 | tig0028916:+3838 | Msa1439930:CDS |
| AAAGCACAAGAATGAGAACA+AGG | 0.624793 | tig0028916:-3945 | None:intergenic |
| ACGATCCACGTTCAGATGAG+AGG | 0.629269 | tig0028916:-3843 | None:intergenic |
| ACACGGTATTCTTCTAGCAG+TGG | 0.660684 | tig0028916:+3687 | Msa1439930:CDS |
| GGTAGAAGAAGAAGACCAAG+TGG | 0.662368 | tig0028916:-3793 | None:intergenic |
| AATAGTATCAGGTTCACCGG+TGG | 0.662862 | tig0028916:-3884 | None:intergenic |
| ATGTATCCAGAAAGACAACA+AGG | 0.678373 | tig0028916:+3649 | Msa1439930:CDS |
| CACCACCGAAGATCGAAACA+CGG | 0.699903 | tig0028916:-3975 | None:intergenic |
| GGTGGTGGAGGAGCACCACA+CGG | 0.704308 | tig0028916:+3670 | Msa1439930:CDS |
| TTCACCGGTGGAGAAAATGG+CGG | 0.726368 | tig0028916:-3872 | None:intergenic |
| TATCCAGAAAGACAACAAGG+TGG | 0.796650 | tig0028916:+3652 | Msa1439930:CDS |
| ACTGCTAGAAGAATACCGTG+TGG | 0.809004 | tig0028916:-3685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATGTATCCAGAAAGACAACA+AGG | + | tig0028916:3649-3668 | Msa1439930:CDS | 35.0% | |
| GTAATAGTTCCTTTCCTTCT+CGG | + | tig0028916:3724-3743 | Msa1439930:CDS | 35.0% | |
| AGCTATCACAGAAGCTATAT+CGG | + | tig0028916:3759-3778 | Msa1439930:CDS | 35.0% | |
| ATGAATAGTATCAGGTTCAC+CGG | - | tig0028916:3890-3909 | None:intergenic | 35.0% | |
| CTAACACGATGAATAGTATC+AGG | - | tig0028916:3898-3917 | None:intergenic | 35.0% | |
| GATACTATTCATCGTGTTAG+TGG | + | tig0028916:3898-3917 | Msa1439930:CDS | 35.0% | |
| AAAGCACAAGAATGAGAACA+AGG | - | tig0028916:3948-3967 | None:intergenic | 35.0% | |
| ! | TTCTCATTCTTGTGCTTTTG+TGG | + | tig0028916:3950-3969 | Msa1439930:CDS | 35.0% |
| TATCCAGAAAGACAACAAGG+TGG | + | tig0028916:3652-3671 | Msa1439930:CDS | 40.0% | |
| ATCGTGAGAAGAAGGATGAT+TGG | - | tig0028916:3817-3836 | None:intergenic | 40.0% | |
| ACTGCTAGAAGAATACCGTG+TGG | - | tig0028916:3688-3707 | None:intergenic | 45.0% | |
| ACACGGTATTCTTCTAGCAG+TGG | + | tig0028916:3687-3706 | Msa1439930:CDS | 45.0% | |
| GGTAGAAGAAGAAGACCAAG+TGG | - | tig0028916:3796-3815 | None:intergenic | 45.0% | |
| GGAACTGAATCGTGAGAAGA+AGG | - | tig0028916:3825-3844 | None:intergenic | 45.0% | |
| AATAGTATCAGGTTCACCGG+TGG | - | tig0028916:3887-3906 | None:intergenic | 45.0% | |
| AGGAAAAGAGCAACACCGAA+CGG | - | tig0028916:3928-3947 | None:intergenic | 45.0% | |
| TGGAACCGTGTTTCGATCTT+CGG | + | tig0028916:3970-3989 | Msa1439930:CDS | 45.0% | |
| ! | CCACCACCTTGTTGTCTTTC+TGG | - | tig0028916:3658-3677 | None:intergenic | 50.0% |
| CCAGAAAGACAACAAGGTGG+TGG | + | tig0028916:3655-3674 | Msa1439930:CDS | 50.0% | |
| ! | GAAAGACAACAAGGTGGTGG+AGG | + | tig0028916:3658-3677 | Msa1439930:CDS | 50.0% |
| CGGTATTCTTCTAGCAGTGG+TGG | + | tig0028916:3690-3709 | Msa1439930:CDS | 50.0% | |
| AGCAGTGGTGGTAGCTATAG+TGG | + | tig0028916:3702-3721 | Msa1439930:CDS | 50.0% | |
| CCTTGATCTCCGAGAAGGAA+AGG | - | tig0028916:3736-3755 | None:intergenic | 50.0% | |
| CCTTTCCTTCTCGGAGATCA+AGG | + | tig0028916:3733-3752 | Msa1439930:CDS | 50.0% | |
| CAGTTCCTCTCATCTGAACG+TGG | + | tig0028916:3838-3857 | Msa1439930:CDS | 50.0% | |
| ACGATCCACGTTCAGATGAG+AGG | - | tig0028916:3846-3865 | None:intergenic | 50.0% | |
| !! | ATCTCCGCCATTTTCTCCAC+CGG | + | tig0028916:3868-3887 | Msa1439930:CDS | 50.0% |
| TTCACCGGTGGAGAAAATGG+CGG | - | tig0028916:3875-3894 | None:intergenic | 50.0% | |
| AGGTTCACCGGTGGAGAAAA+TGG | - | tig0028916:3878-3897 | None:intergenic | 50.0% | |
| ! | CGTGTTAGTGGATCACCGTT+CGG | + | tig0028916:3910-3929 | Msa1439930:CDS | 50.0% |
| AACCGTGTTTCGATCTTCGG+TGG | + | tig0028916:3973-3992 | Msa1439930:CDS | 50.0% | |
| CACCACCGAAGATCGAAACA+CGG | - | tig0028916:3978-3997 | None:intergenic | 50.0% | |
| CTTCGCCTTGATCTCCGAGA+AGG | - | tig0028916:3741-3760 | None:intergenic | 55.0% | |
| TCGGAGCTGCTAAGTCCACT+TGG | + | tig0028916:3778-3797 | Msa1439930:CDS | 55.0% | |
| !! | GGTGGTGGAGGAGCACCACA+CGG | + | tig0028916:3670-3689 | Msa1439930:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028916 | gene | 3649 | 4014 | 3649 | ID=Msa1439930;Name=Msa1439930 |
| tig0028916 | mRNA | 3649 | 4014 | 3649 | ID=Msa1439930-mRNA-1;Parent=Msa1439930;Name=Msa1439930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|121 |
| tig0028916 | exon | 3649 | 4014 | 3649 | ID=Msa1439930-mRNA-1:exon:12000;Parent=Msa1439930-mRNA-1 |
| tig0028916 | CDS | 3649 | 4014 | 3649 | ID=Msa1439930-mRNA-1:cds;Parent=Msa1439930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
