Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841620 | XP_013453676.1 | 97.436 | 117 | 3 | 0 | 98 | 214 | 12 | 128 | 6.61e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841620 | sp|Q9CQZ7|RPC10_MOUSE | 39.823 | 113 | 60 | 2 | 102 | 214 | 4 | 108 | 1.13e-22 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841620 | A0A072UDK1 | 97.436 | 117 | 3 | 0 | 98 | 214 | 12 | 128 | 3.16e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0760990 | Msa0841620 | 0.906717 | 1.100750e-80 | -8.615850e-47 |
| Msa0841620 | Msa1067890 | 0.806998 | 6.263730e-50 | -8.615850e-47 |
| Msa0841620 | Msa1080330 | 0.816284 | 5.985746e-52 | -8.615850e-47 |
| Msa0841620 | Msa1156150 | 0.816594 | 5.102294e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841620 | MtrunA17_Chr5g0411181 | 98.182 | 110 | 2 | 0 | 105 | 214 | 1 | 110 | 9.91e-79 | 231 |
| Msa0841620 | MtrunA17_Chr7g0275211 | 86.486 | 111 | 14 | 1 | 105 | 214 | 1 | 111 | 9.41e-69 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841620 | AT4G07950.1 | 44.348 | 115 | 54 | 3 | 100 | 214 | 1 | 105 | 2.96e-29 | 105 |
| Msa0841620 | AT1G01210.2 | 41.739 | 115 | 57 | 3 | 100 | 214 | 1 | 105 | 3.36e-27 | 100 |
| Msa0841620 | AT1G01210.1 | 41.739 | 115 | 57 | 3 | 100 | 214 | 1 | 105 | 3.36e-27 | 100 |
| Msa0841620 | AT1G01210.3 | 41.739 | 115 | 57 | 3 | 100 | 214 | 1 | 105 | 3.36e-27 | 100 |
Find 47 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTACCTCTGCAACAAATT+AGG | 0.163955 | 5_4:-18105869 | Msa0841620:CDS |
| GCTTGAGGATGGCGACAATT+TGG | 0.237510 | 5_4:+18103674 | None:intergenic |
| TTCTCGATTGAGCAAATATA+TGG | 0.241781 | 5_4:+18104882 | None:intergenic |
| TTTACCTCTGCAACAAATTA+GGG | 0.288191 | 5_4:-18105868 | Msa0841620:CDS |
| ATCTCATGATGGGAGATAAT+AGG | 0.295531 | 5_4:+18104711 | None:intergenic |
| CATTGCTCATTCCATTTCTC+AGG | 0.315524 | 5_4:-18105807 | Msa0841620:intron |
| AAGATTCTGCGTTCTATGTT+TGG | 0.315944 | 5_4:+18105956 | None:intergenic |
| CTTGAGGATGGCGACAATTT+GGG | 0.324696 | 5_4:+18103675 | None:intergenic |
| AAATTTGTCGTGACTCGAAT+TGG | 0.331864 | 5_4:+18104935 | None:intergenic |
| CACTCGTAAAATATTGTTGC+AGG | 0.338187 | 5_4:+18103614 | None:intergenic |
| AGATTCTGCGTTCTATGTTT+GGG | 0.352114 | 5_4:+18105957 | None:intergenic |
| AGGGTTTCAAATCGTGGTTT+TGG | 0.364585 | 5_4:-18105918 | Msa0841620:CDS |
| GTAACTAAAGTTGAAGGATA+TGG | 0.389045 | 5_4:+18106007 | None:intergenic |
| AGAGAAGACAAATGCTGGTT+AGG | 0.408988 | 5_4:-18104746 | Msa0841620:CDS |
| AAAGTAGTACCGTCGGCTTT+TGG | 0.414427 | 5_4:+18104675 | None:intergenic |
| GAAGATGTAACTAAAGTTGA+AGG | 0.417425 | 5_4:+18106001 | None:intergenic |
| AGGATTATTGACCTGAGAAA+TGG | 0.420415 | 5_4:+18105796 | None:intergenic |
| TCTCATGATGGGAGATAATA+GGG | 0.429313 | 5_4:+18104712 | None:intergenic |
| TATTCTTGTTGATCTCATGA+TGG | 0.460772 | 5_4:+18104700 | None:intergenic |
| CATCTCACTCCTTCCACTTG+TGG | 0.461178 | 5_4:+18103573 | None:intergenic |
| AATTTGTCGTGACTCGAATT+GGG | 0.488382 | 5_4:+18104936 | None:intergenic |
| ATCAGCATGCTCCCGCACAT+AGG | 0.496816 | 5_4:+18104969 | None:intergenic |
| GACAAATGCTGGTTAGGAAA+GGG | 0.497928 | 5_4:-18104740 | Msa0841620:CDS |
| ATTCTTGTTGATCTCATGAT+GGG | 0.514246 | 5_4:+18104701 | None:intergenic |
| GATTAAGAGAAGACAAATGC+TGG | 0.517033 | 5_4:-18104751 | Msa0841620:CDS |
| TATTTGCTCAATCGAGAAAG+AGG | 0.528655 | 5_4:-18104877 | Msa0841620:intron |
| GTGAGGCAATAAAACCTTGT+GGG | 0.529652 | 5_4:+18104909 | None:intergenic |
| TCAGCATGCTCCCGCACATA+GGG | 0.540563 | 5_4:+18104970 | None:intergenic |
| GAAGCCCTAATTTGTTGCAG+AGG | 0.558495 | 5_4:+18105864 | None:intergenic |
| AGACAAATGCTGGTTAGGAA+AGG | 0.564511 | 5_4:-18104741 | Msa0841620:CDS |
| CTAGATCAATCTCTGGGTGG+TGG | 0.574597 | 5_4:+18106056 | None:intergenic |
| ATGAAAAGTGTGGCCACAAG+TGG | 0.599470 | 5_4:-18103586 | Msa0841620:CDS |
| GGATGGCGACAATTTGGGCA+TGG | 0.605399 | 5_4:+18103680 | None:intergenic |
| AAATGGAATGAGCAATGAGA+GGG | 0.627777 | 5_4:+18105813 | None:intergenic |
| AGCAAATATATGGACAAGTG+AGG | 0.632197 | 5_4:+18104892 | None:intergenic |
| AAAGTGTGGCCACAAGTGGA+AGG | 0.641576 | 5_4:-18103582 | Msa0841620:CDS |
| ACGACAAATTTCATCCCACA+AGG | 0.644788 | 5_4:-18104923 | Msa0841620:CDS |
| TAGTTCTCCAAATGAAACTG+TGG | 0.645675 | 5_4:-18106093 | None:intergenic |
| GGGTGGTGGCGAGAATAGAG+AGG | 0.647780 | 5_4:+18106070 | None:intergenic |
| GAAATGGAATGAGCAATGAG+AGG | 0.649485 | 5_4:+18105812 | None:intergenic |
| GGTAAATCTCTGATTTGACT+CGG | 0.653468 | 5_4:+18105885 | None:intergenic |
| AAGAATAAACCAAAAGCCGA+CGG | 0.660260 | 5_4:-18104684 | Msa0841620:intron |
| AGTGAGGCAATAAAACCTTG+TGG | 0.661965 | 5_4:+18104908 | None:intergenic |
| TGTGATAACTAGCTTGAGGA+TGG | 0.663098 | 5_4:+18103663 | None:intergenic |
| TGCATGTGATAACTAGCTTG+AGG | 0.701040 | 5_4:+18103659 | None:intergenic |
| AAACTAGATCAATCTCTGGG+TGG | 0.712298 | 5_4:+18106053 | None:intergenic |
| GAGTGCTTGAATGAAAAGTG+TGG | 0.765667 | 5_4:-18103596 | Msa0841620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAATGAAATATAACTAT+AGG | + | chr5_4:18104187-18104206 | None:intergenic | 15.0% |
| !! | TGTGAAATAATTATATCAAT+TGG | - | chr5_4:18105079-18105098 | Msa0841620:intron | 15.0% |
| !! | TTAAACCTTCAAAATATAAT+GGG | + | chr5_4:18105318-18105337 | None:intergenic | 15.0% |
| !! | TTTAAACCTTCAAAATATAA+TGG | + | chr5_4:18105319-18105338 | None:intergenic | 15.0% |
| !! | TTTCAAAAAAAAAAGAAACA+AGG | + | chr5_4:18105826-18105845 | None:intergenic | 15.0% |
| !!! | TTGTTTCTTTTTTTTTTGAA+AGG | - | chr5_4:18105825-18105844 | Msa0841620:CDS | 15.0% |
| !! | AAAAATGGAAATAATGATAA+AGG | + | chr5_4:18105876-18105895 | None:intergenic | 15.0% |
| !! | ATCTTCGTAACAAAAAAAAT+AGG | - | chr5_4:18103686-18103705 | Msa0841620:intron | 20.0% |
| !! | TCTTCGTAACAAAAAAAATA+GGG | - | chr5_4:18103687-18103706 | Msa0841620:intron | 20.0% |
| !! | ATCAAATCAAATCAAATCAA+AGG | + | chr5_4:18103892-18103911 | None:intergenic | 20.0% |
| !!! | TTGATTTGATTTGATTTGAT+TGG | - | chr5_4:18103892-18103911 | Msa0841620:intron | 20.0% |
| !!! | TTTTTTACCTATTGATCAAT+TGG | - | chr5_4:18103969-18103988 | Msa0841620:intron | 20.0% |
| !!! | TTTTTACCTATTGATCAATT+GGG | - | chr5_4:18103970-18103989 | Msa0841620:intron | 20.0% |
| !! | AATACTACAAAAGCAATATA+AGG | + | chr5_4:18104319-18104338 | None:intergenic | 20.0% |
| !! | TGTAATAAAATATTAGACCT+GGG | + | chr5_4:18104371-18104390 | None:intergenic | 20.0% |
| !! | ATGTAATAAAATATTAGACC+TGG | + | chr5_4:18104372-18104391 | None:intergenic | 20.0% |
| !! | TCAATTCATCCTATTTAATA+TGG | - | chr5_4:18104503-18104522 | Msa0841620:intron | 20.0% |
| !! | TTGATTGAACCATATTAAAT+AGG | + | chr5_4:18104515-18104534 | None:intergenic | 20.0% |
| !! | CTAAACAACTAGTAAATAAT+AGG | + | chr5_4:18104581-18104600 | None:intergenic | 20.0% |
| !! | AAAAGAAAACATGATGAAAT+GGG | + | chr5_4:18104839-18104858 | None:intergenic | 20.0% |
| !! | TAAAAGAAAACATGATGAAA+TGG | + | chr5_4:18104840-18104859 | None:intergenic | 20.0% |
| !! | ATAAACCAATAAAATCAGTT+CGG | + | chr5_4:18105105-18105124 | None:intergenic | 20.0% |
| !!! | AACTGATTTTATTGGTTTAT+TGG | - | chr5_4:18105105-18105124 | Msa0841620:intron | 20.0% |
| !!! | ATATATGTTAAAAGTATTGC+TGG | + | chr5_4:18105375-18105394 | None:intergenic | 20.0% |
| !! | TAAACTTAAAAGTTCCTATT+AGG | + | chr5_4:18105571-18105590 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTTACATGATTTA+CGG | - | chr5_4:18105641-18105660 | Msa0841620:intron | 20.0% |
| !! | TTGTGAATTAACATTGTTTA+TGG | - | chr5_4:18105753-18105772 | Msa0841620:intron | 20.0% |
| !! | AGAAAAGGAAGATATAAAAA+TGG | + | chr5_4:18105891-18105910 | None:intergenic | 20.0% |
| ! | CCAAACTCAAAAATAGAAAA+TGG | + | chr5_4:18104067-18104086 | None:intergenic | 25.0% |
| !!! | CCATTTTCTATTTTTGAGTT+TGG | - | chr5_4:18104064-18104083 | Msa0841620:intron | 25.0% |
| ! | ATATAACTATAGGTTTGATG+AGG | + | chr5_4:18104177-18104196 | None:intergenic | 25.0% |
| !!! | GCTTTTGTAGTATTTTTAGT+TGG | - | chr5_4:18104325-18104344 | Msa0841620:intron | 25.0% |
| !! | TCTCTATAAATATTTTGCCT+TGG | + | chr5_4:18104470-18104489 | None:intergenic | 25.0% |
| !! | CATGTTTTCTTTTACTTTAC+AGG | - | chr5_4:18104846-18104865 | Msa0841620:intron | 25.0% |
| ! | ATTTGATTATCCAAGTAAAC+AGG | + | chr5_4:18105032-18105051 | None:intergenic | 25.0% |
| ! | TTTAGTCAATAAGATAAGAG+GGG | + | chr5_4:18105193-18105212 | None:intergenic | 25.0% |
| ! | CTTTAGTCAATAAGATAAGA+GGG | + | chr5_4:18105194-18105213 | None:intergenic | 25.0% |
| ! | TCTTTAGTCAATAAGATAAG+AGG | + | chr5_4:18105195-18105214 | None:intergenic | 25.0% |
| !! | TTATTTTCCTTGTACTAAGT+TGG | - | chr5_4:18105588-18105607 | Msa0841620:intron | 25.0% |
| ! | AAGGAAATAACAAAGAAACA+AGG | + | chr5_4:18105857-18105876 | None:intergenic | 25.0% |
| CAAAAACTAGATCAATCTCT+GGG | + | chr5_4:18103577-18103596 | None:intergenic | 30.0% | |
| GTAACTAAAGTTGAAGGATA+TGG | + | chr5_4:18103620-18103639 | None:intergenic | 30.0% | |
| GAAGATGTAACTAAAGTTGA+AGG | + | chr5_4:18103626-18103645 | None:intergenic | 30.0% | |
| AAAAATAGGGTTTCAAATCG+TGG | - | chr5_4:18103700-18103719 | Msa0841620:intron | 30.0% | |
| ATTTACCTCTGCAACAAATT+AGG | - | chr5_4:18103755-18103774 | Msa0841620:intron | 30.0% | |
| TTTACCTCTGCAACAAATTA+GGG | - | chr5_4:18103756-18103775 | Msa0841620:intron | 30.0% | |
| TAAGAGAGTGAAATTGAGAA+AGG | + | chr5_4:18103851-18103870 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTGGATCATCTGA+TGG | - | chr5_4:18104337-18104356 | Msa0841620:intron | 30.0% |
| AATAATTCAGTGCCTTTAGT+TGG | - | chr5_4:18104533-18104552 | Msa0841620:intron | 30.0% | |
| TTCTCGATTGAGCAAATATA+TGG | + | chr5_4:18104745-18104764 | None:intergenic | 30.0% | |
| !! | TAACTGGTTGGTAATAGAAA+TGG | + | chr5_4:18104804-18104823 | None:intergenic | 30.0% |
| ATTCTTGTTGATCTCATGAT+GGG | + | chr5_4:18104926-18104945 | None:intergenic | 30.0% | |
| TATTCTTGTTGATCTCATGA+TGG | + | chr5_4:18104927-18104946 | None:intergenic | 30.0% | |
| TAAAAGAAAAGTAGTACCGT+CGG | + | chr5_4:18104959-18104978 | None:intergenic | 30.0% | |
| !! | TTTATTGGTTTATTGGTCGT+TGG | - | chr5_4:18105112-18105131 | Msa0841620:intron | 30.0% |
| !!! | TACGATCTGTTTTTAGTGAT+TGG | - | chr5_4:18105141-18105160 | Msa0841620:intron | 30.0% |
| !!! | ACGATCTGTTTTTAGTGATT+GGG | - | chr5_4:18105142-18105161 | Msa0841620:intron | 30.0% |
| !! | GGCTCTGAAGATAAATATTT+GGG | - | chr5_4:18105163-18105182 | Msa0841620:intron | 30.0% |
| !! | GCTCTGAAGATAAATATTTG+GGG | - | chr5_4:18105164-18105183 | Msa0841620:intron | 30.0% |
| TTGAATGTGATCTAATGCAA+AGG | - | chr5_4:18105227-18105246 | Msa0841620:intron | 30.0% | |
| TGAATGTGATCTAATGCAAA+GGG | - | chr5_4:18105228-18105247 | Msa0841620:intron | 30.0% | |
| ATCTAATGCAAAGGGATAAA+TGG | - | chr5_4:18105236-18105255 | Msa0841620:intron | 30.0% | |
| TCTAATGCAAAGGGATAAAT+GGG | - | chr5_4:18105237-18105256 | Msa0841620:intron | 30.0% | |
| !!! | TATTTTTTCTAGCACTGTTG+AGG | - | chr5_4:18105289-18105308 | Msa0841620:intron | 30.0% |
| CACACAAGTTTGATATGTAT+TGG | + | chr5_4:18105431-18105450 | None:intergenic | 30.0% | |
| CATATCAAACTTGTGTGATT+TGG | - | chr5_4:18105434-18105453 | Msa0841620:intron | 30.0% | |
| !!! | ACTTGTGTGATTTGGTTTTA+AGG | - | chr5_4:18105442-18105461 | Msa0841620:intron | 30.0% |
| TTGGATTATCAACTCCTAAT+AGG | - | chr5_4:18105554-18105573 | Msa0841620:intron | 30.0% | |
| TCGCGAATTAACATTGTTTA+TGG | - | chr5_4:18105678-18105697 | Msa0841620:intron | 30.0% | |
| GCAAAAACTAGATCAATCTC+TGG | + | chr5_4:18103578-18103597 | None:intergenic | 35.0% | |
| AGATTCTGCGTTCTATGTTT+GGG | + | chr5_4:18103670-18103689 | None:intergenic | 35.0% | |
| AAGATTCTGCGTTCTATGTT+TGG | + | chr5_4:18103671-18103690 | None:intergenic | 35.0% | |
| ! | GGTAAATCTCTGATTTGACT+CGG | + | chr5_4:18103742-18103761 | None:intergenic | 35.0% |
| AAATGGAATGAGCAATGAGA+GGG | + | chr5_4:18103814-18103833 | None:intergenic | 35.0% | |
| AGGATTATTGACCTGAGAAA+TGG | + | chr5_4:18103831-18103850 | None:intergenic | 35.0% | |
| ATCTGACCCAATTGATCAAT+AGG | + | chr5_4:18103979-18103998 | None:intergenic | 35.0% | |
| TTGATCAATTGGGTCAGATT+TGG | - | chr5_4:18103980-18103999 | Msa0841620:intron | 35.0% | |
| TGGAACAAGCAATAAGAGAT+AGG | + | chr5_4:18104047-18104066 | None:intergenic | 35.0% | |
| AAATCACTCTTTGCAGAATG+TGG | - | chr5_4:18104106-18104125 | Msa0841620:intron | 35.0% | |
| GCATTAAGATAAAGAAGGTG+TGG | + | chr5_4:18104279-18104298 | None:intergenic | 35.0% | |
| AGTGGGCATTAAGATAAAGA+AGG | + | chr5_4:18104284-18104303 | None:intergenic | 35.0% | |
| GGTAATACTAACCTATCCTA+GGG | + | chr5_4:18104449-18104468 | None:intergenic | 35.0% | |
| TGGTAATACTAACCTATCCT+AGG | + | chr5_4:18104450-18104469 | None:intergenic | 35.0% | |
| AGGATAGGTTAGTATTACCA+AGG | - | chr5_4:18104450-18104469 | Msa0841620:intron | 35.0% | |
| GATGAATTGATCGCATTACT+CGG | + | chr5_4:18104493-18104512 | None:intergenic | 35.0% | |
| CGTTAATTGTGTTGTGAAGA+TGG | - | chr5_4:18104624-18104643 | Msa0841620:intron | 35.0% | |
| AATTTGTCGTGACTCGAATT+GGG | + | chr5_4:18104691-18104710 | None:intergenic | 35.0% | |
| AAATTTGTCGTGACTCGAAT+TGG | + | chr5_4:18104692-18104711 | None:intergenic | 35.0% | |
| AGCAAATATATGGACAAGTG+AGG | + | chr5_4:18104735-18104754 | None:intergenic | 35.0% | |
| TATTTGCTCAATCGAGAAAG+AGG | - | chr5_4:18104747-18104766 | Msa0841620:CDS | 35.0% | |
| TTGAATTGAAGGTAACTGGT+TGG | + | chr5_4:18104816-18104835 | None:intergenic | 35.0% | |
| !! | GATGAAATGGGTTGAATTGA+AGG | + | chr5_4:18104827-18104846 | None:intergenic | 35.0% |
| GATTAAGAGAAGACAAATGC+TGG | - | chr5_4:18104873-18104892 | Msa0841620:intron | 35.0% | |
| ! | TCTCATGATGGGAGATAATA+GGG | + | chr5_4:18104915-18104934 | None:intergenic | 35.0% |
| ! | ATCTCATGATGGGAGATAAT+AGG | + | chr5_4:18104916-18104935 | None:intergenic | 35.0% |
| AAGAATAAACCAAAAGCCGA+CGG | - | chr5_4:18104940-18104959 | Msa0841620:CDS | 35.0% | |
| ! | CATTCTTCTTTAGCTCATTG+TGG | - | chr5_4:18105005-18105024 | Msa0841620:intron | 35.0% |
| !! | ATTGGCCGAACTGATTTTAT+TGG | - | chr5_4:18105097-18105116 | Msa0841620:intron | 35.0% |
| !! | GGGCTCTGAAGATAAATATT+TGG | - | chr5_4:18105162-18105181 | Msa0841620:intron | 35.0% |
| ATCACATTCAACTCAAGAGA+AGG | + | chr5_4:18105218-18105237 | None:intergenic | 35.0% | |
| CTAATGCAAAGGGATAAATG+GGG | - | chr5_4:18105238-18105257 | Msa0841620:intron | 35.0% | |
| !! | GGTCACCCATTATATTTTGA+AGG | - | chr5_4:18105310-18105329 | Msa0841620:intron | 35.0% |
| !! | AAGTATTGCTGGCTTAGATT+TGG | + | chr5_4:18105364-18105383 | None:intergenic | 35.0% |
| ! | CAAGTTTGATATGTATTGGC+AGG | + | chr5_4:18105427-18105446 | None:intergenic | 35.0% |
| !!! | GTGTGATTTGGTTTTAAGGA+TGG | - | chr5_4:18105446-18105465 | Msa0841620:intron | 35.0% |
| !! | ATTTACGAGCTTTAAGAAGC+AGG | - | chr5_4:18105482-18105501 | Msa0841620:intron | 35.0% |
| !! | TTTACGAGCTTTAAGAAGCA+GGG | - | chr5_4:18105483-18105502 | Msa0841620:intron | 35.0% |
| TGAGTTTGCATGTTTCAGTT+TGG | - | chr5_4:18105535-18105554 | Msa0841620:intron | 35.0% | |
| AACAAGACCAACTTAGTACA+AGG | + | chr5_4:18105598-18105617 | None:intergenic | 35.0% | |
| CACTCGTAAAATATTGTTGC+AGG | + | chr5_4:18106013-18106032 | None:intergenic | 35.0% | |
| AAACTAGATCAATCTCTGGG+TGG | + | chr5_4:18103574-18103593 | None:intergenic | 40.0% | |
| ! | AGGGTTTCAAATCGTGGTTT+TGG | - | chr5_4:18103706-18103725 | Msa0841620:intron | 40.0% |
| GAAATGGAATGAGCAATGAG+AGG | + | chr5_4:18103815-18103834 | None:intergenic | 40.0% | |
| CATTGCTCATTCCATTTCTC+AGG | - | chr5_4:18103817-18103836 | Msa0841620:intron | 40.0% | |
| TAATGCCCACTTGTGTAGAT+TGG | - | chr5_4:18104293-18104312 | Msa0841620:intron | 40.0% | |
| TAAGGCCAATCTACACAAGT+GGG | + | chr5_4:18104301-18104320 | None:intergenic | 40.0% | |
| ATAAGGCCAATCTACACAAG+TGG | + | chr5_4:18104302-18104321 | None:intergenic | 40.0% | |
| CGATTCAGAACACCAACTAA+AGG | + | chr5_4:18104548-18104567 | None:intergenic | 40.0% | |
| ACGACAAATTTCATCCCACA+AGG | - | chr5_4:18104701-18104720 | Msa0841620:CDS | 40.0% | |
| GTGAGGCAATAAAACCTTGT+GGG | + | chr5_4:18104718-18104737 | None:intergenic | 40.0% | |
| AGTGAGGCAATAAAACCTTG+TGG | + | chr5_4:18104719-18104738 | None:intergenic | 40.0% | |
| ! | TGGGTTGAATTGAAGGTAAC+TGG | + | chr5_4:18104820-18104839 | None:intergenic | 40.0% |
| ! | AGAGAAGACAAATGCTGGTT+AGG | - | chr5_4:18104878-18104897 | Msa0841620:CDS | 40.0% |
| ! | AGACAAATGCTGGTTAGGAA+AGG | - | chr5_4:18104883-18104902 | Msa0841620:CDS | 40.0% |
| ! | GACAAATGCTGGTTAGGAAA+GGG | - | chr5_4:18104884-18104903 | Msa0841620:CDS | 40.0% |
| TCATTGTGGACCTGTTTACT+TGG | - | chr5_4:18105019-18105038 | Msa0841620:intron | 40.0% | |
| GATTCAACCACTGTTTGTCT+TGG | - | chr5_4:18105716-18105735 | Msa0841620:intron | 40.0% | |
| GAAGAGGAATGAGTGAGAAA+AGG | + | chr5_4:18105906-18105925 | None:intergenic | 40.0% | |
| CTAGGAGGGAAAAAAAGAAG+AGG | + | chr5_4:18105922-18105941 | None:intergenic | 40.0% | |
| ! | TGTGATAACTAGCTTGAGGA+TGG | + | chr5_4:18105964-18105983 | None:intergenic | 40.0% |
| ! | TGCATGTGATAACTAGCTTG+AGG | + | chr5_4:18105968-18105987 | None:intergenic | 40.0% |
| GAGTGCTTGAATGAAAAGTG+TGG | - | chr5_4:18106028-18106047 | Msa0841620:CDS | 40.0% | |
| !! | GAAGCCCTAATTTGTTGCAG+AGG | + | chr5_4:18103763-18103782 | None:intergenic | 45.0% |
| TAGTTGGATCATCTGATGGC+TGG | - | chr5_4:18104341-18104360 | Msa0841620:intron | 45.0% | |
| ! | ATGGAGTTTTGCCCTATGTG+CGG | - | chr5_4:18104643-18104662 | Msa0841620:intron | 45.0% |
| !!! | AAAGTAGTACCGTCGGCTTT+TGG | + | chr5_4:18104952-18104971 | None:intergenic | 45.0% |
| ! | TGGGGCTTTAGTTTAGTGCA+AGG | - | chr5_4:18105256-18105275 | Msa0841620:intron | 45.0% |
| GCTCAAACCAAGACAAACAG+TGG | + | chr5_4:18105726-18105745 | None:intergenic | 45.0% | |
| ATTTGGGCATGGTACTAGGA+GGG | + | chr5_4:18105936-18105955 | None:intergenic | 45.0% | |
| AATTTGGGCATGGTACTAGG+AGG | + | chr5_4:18105937-18105956 | None:intergenic | 45.0% | |
| GACAATTTGGGCATGGTACT+AGG | + | chr5_4:18105940-18105959 | None:intergenic | 45.0% | |
| CTTGAGGATGGCGACAATTT+GGG | + | chr5_4:18105952-18105971 | None:intergenic | 45.0% | |
| ! | ATGAAAAGTGTGGCCACAAG+TGG | - | chr5_4:18106038-18106057 | Msa0841620:CDS | 45.0% |
| !!! | AATATTTTATTACATATATT+AGG | - | chr5_4:18104377-18104396 | Msa0841620:intron | 5.0% |
| !! | TGAAAAAATAAAATAAAAAT+AGG | + | chr5_4:18105786-18105805 | None:intergenic | 5.0% |
| CTAGATCAATCTCTGGGTGG+TGG | + | chr5_4:18103571-18103590 | None:intergenic | 50.0% | |
| GCGGAAGGAGAATACAATGG+TGG | + | chr5_4:18104417-18104436 | None:intergenic | 50.0% | |
| GCAGCGGAAGGAGAATACAA+TGG | + | chr5_4:18104420-18104439 | None:intergenic | 50.0% | |
| CTAACCTATCCTAGGGATCG+CGG | + | chr5_4:18104442-18104461 | None:intergenic | 50.0% | |
| ! | TGGAGTTTTGCCCTATGTGC+GGG | - | chr5_4:18104644-18104663 | Msa0841620:intron | 50.0% |
| AAGCAGGGAAGTAGAAGTCG+TGG | - | chr5_4:18105498-18105517 | Msa0841620:intron | 50.0% | |
| GGGAAGTAGAAGTCGTGGTA+TGG | - | chr5_4:18105503-18105522 | Msa0841620:intron | 50.0% | |
| GCTTGAGGATGGCGACAATT+TGG | + | chr5_4:18105953-18105972 | None:intergenic | 50.0% | |
| AAAGTGTGGCCACAAGTGGA+AGG | - | chr5_4:18106042-18106061 | Msa0841620:CDS | 50.0% | |
| CATCTCACTCCTTCCACTTG+TGG | + | chr5_4:18106054-18106073 | None:intergenic | 50.0% | |
| !! | ATCTGATGGCTGGTCTTCCC+AGG | - | chr5_4:18104351-18104370 | Msa0841620:intron | 55.0% |
| TCAGCATGCTCCCGCACATA+GGG | + | chr5_4:18104657-18104676 | None:intergenic | 55.0% | |
| ATCAGCATGCTCCCGCACAT+AGG | + | chr5_4:18104658-18104677 | None:intergenic | 55.0% | |
| GGATGGCGACAATTTGGGCA+TGG | + | chr5_4:18105947-18105966 | None:intergenic | 55.0% | |
| ! | GGGTGGTGGCGAGAATAGAG+AGG | + | chr5_4:18103557-18103576 | None:intergenic | 60.0% |
| TATCCTAGGGATCGCGGCAG+CGG | + | chr5_4:18104436-18104455 | None:intergenic | 60.0% | |
| GCTGCCGCGATCCCTAGGAT+AGG | - | chr5_4:18104435-18104454 | Msa0841620:intron | 65.0% | |
| CTAGGGATCGCGGCAGCGGA+AGG | + | chr5_4:18104432-18104451 | None:intergenic | 70.0% | |
| CTTCCGCTGCCGCGATCCCT+AGG | - | chr5_4:18104430-18104449 | Msa0841620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 18103542 | 18106104 | 18103542 | ID=Msa0841620;Name=Msa0841620 |
| chr5_4 | mRNA | 18103542 | 18106104 | 18103542 | ID=Msa0841620-mRNA-1;Parent=Msa0841620;Name=Msa0841620-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.66|0.75|1|1|1|4|35|214 |
| chr5_4 | exon | 18103542 | 18103704 | 18103542 | ID=Msa0841620-mRNA-1:exon:7639;Parent=Msa0841620-mRNA-1 |
| chr5_4 | exon | 18104685 | 18104778 | 18104685 | ID=Msa0841620-mRNA-1:exon:7638;Parent=Msa0841620-mRNA-1 |
| chr5_4 | exon | 18104878 | 18105003 | 18104878 | ID=Msa0841620-mRNA-1:exon:7637;Parent=Msa0841620-mRNA-1 |
| chr5_4 | exon | 18105808 | 18106104 | 18105808 | ID=Msa0841620-mRNA-1:exon:7636;Parent=Msa0841620-mRNA-1 |
| chr5_4 | CDS | 18105808 | 18106104 | 18105808 | ID=Msa0841620-mRNA-1:cds;Parent=Msa0841620-mRNA-1 |
| chr5_4 | CDS | 18104878 | 18105003 | 18104878 | ID=Msa0841620-mRNA-1:cds;Parent=Msa0841620-mRNA-1 |
| chr5_4 | CDS | 18104685 | 18104778 | 18104685 | ID=Msa0841620-mRNA-1:cds;Parent=Msa0841620-mRNA-1 |
| chr5_4 | CDS | 18103577 | 18103704 | 18103577 | ID=Msa0841620-mRNA-1:cds;Parent=Msa0841620-mRNA-1 |
| chr5_4 | three_prime_UTR | 18103542 | 18103576 | 18103542 | ID=Msa0841620-mRNA-1:three_prime_utr;Parent=Msa0841620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
