AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080330 MtrunA17_Chr7g0249511 96.390 277 8 1 1 277 1 275 0.0 523
Msa1080330 MtrunA17_Chr6g0454551 55.046 218 88 5 66 276 62 276 2.49e-62 197
Msa1080330 MtrunA17_Chr7g0218731 52.423 227 88 4 66 276 63 285 8.70e-59 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080330 AT5G16390.1 47.635 296 116 8 2 277 3 279 1.93e-71 221
Msa1080330 AT5G15530.1 50.661 227 85 5 59 276 45 253 6.60e-62 196
Msa1080330 AT5G16390.2 45.896 268 106 8 2 249 3 251 3.92e-55 179

Find 88 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAGAGAGTTGTTGGAATT+AGG 0.229652 7_2:-79775252 None:intergenic
TCAACATCTGATTTGGCTTT+AGG 0.237476 7_2:-79776139 None:intergenic
GCTCTATTCAATCACAAATA+AGG 0.243185 7_2:-79780515 None:intergenic
CGGTGGTTCAACATCTGATT+TGG 0.261689 7_2:-79776146 None:intergenic
CTTACAGTATCAACGCTTAC+AGG 0.270452 7_2:-79780405 None:intergenic
GAATGTTTACCTCATTTAAC+TGG 0.275310 7_2:-79775416 None:intergenic
TTCAGTTTGAGTTTGATTCA+TGG 0.304360 7_2:+79775107 Msa1080330:exon
AGAGGCGGACGTGATGATTT+AGG 0.305522 7_2:-79776970 None:intergenic
TTCAACAAGGTTGCCCTTGA+TGG 0.321266 7_2:+79776097 Msa1080330:intron
GCAGGTTGAGGAGCATATTC+TGG 0.327362 7_2:-79776841 None:intergenic
ATGAGAAAAGCGTGCAGATT+TGG 0.332822 7_2:-79775202 None:intergenic
TCAGTTGAACCATCTTCTTC+AGG 0.335118 7_2:+79776178 Msa1080330:CDS
TACATGATTGGACTATGTTT+CGG 0.364024 7_2:+79780701 Msa1080330:three_prime_UTR
TTGAGTAGTGTGAGGCGTAT+AGG 0.368588 7_2:+79780586 Msa1080330:three_prime_UTR
ATTTAACTGGGCCTTAACCC+TGG 0.377458 7_2:-79775403 None:intergenic
GCTATTATGCCCCAGGGTTA+AGG 0.391263 7_2:+79775392 Msa1080330:CDS
TAAACTGTGAAGTACTAATC+AGG 0.422789 7_2:+79776797 Msa1080330:CDS
CTCTATTCAATCACAAATAA+GGG 0.424132 7_2:-79780514 None:intergenic
AGAGTATGTGATGGCGCAAC+AGG 0.424416 7_2:-79776898 None:intergenic
GGGCATAATAGCATATGATT+AGG 0.451440 7_2:-79775381 None:intergenic
TTTAACTGGGCCTTAACCCT+GGG 0.451990 7_2:-79775402 None:intergenic
TGTCGGATCGATGAAATCTA+AGG 0.457102 7_2:-79775065 None:intergenic
GGCTTTAGGAGGCACATCAT+TGG 0.466527 7_2:-79776125 None:intergenic
GTATTCACAACCTTCGCAAA+CGG 0.468806 7_2:+79776870 Msa1080330:CDS
GAAGTTGGCGTTGAAGGAGC+AGG 0.470077 7_2:-79776928 None:intergenic
TGAACCATCTTCTTCAGGCT+TGG 0.483109 7_2:+79776183 Msa1080330:CDS
ATCATATGCTATTATGCCCC+AGG 0.484549 7_2:+79775385 Msa1080330:CDS
ACTATGCAGGCTGATAAGTC+AGG 0.498671 7_2:+79780348 Msa1080330:intron
CCTCTTAAAAGCCCCATGGC+AGG 0.499067 7_2:+79776988 Msa1080330:CDS
AACGGAGGTTCACCCGGTGC+AGG 0.503250 7_2:-79777027 None:intergenic
TCGGTAGAATGTCCCTGCCA+TGG 0.503817 7_2:-79777001 None:intergenic
TGGAATTAGGAGAGAGACGA+GGG 0.509409 7_2:-79775239 None:intergenic
GATGATTTAGGTAGCTTGAC+AGG 0.515867 7_2:-79776958 None:intergenic
CATAATAGCATATGATTAGG+TGG 0.518130 7_2:-79775378 None:intergenic
GACGGAGTATTCAAGTAGAC+TGG 0.518813 7_2:+79780539 Msa1080330:three_prime_UTR
AGAGAGACGAGGGAAAGTGA+TGG 0.519967 7_2:-79775229 None:intergenic
GAGACGAGGGAAAGTGATGG+AGG 0.521390 7_2:-79775226 None:intergenic
GTTCACCCGGTGCAGGACTT+CGG 0.523121 7_2:-79777020 None:intergenic
GGTGGGAGACGAAGTAAAGA+AGG 0.523639 7_2:+79777133 Msa1080330:intron
TGAGGAGCATATTCTGGTTG+AGG 0.524502 7_2:-79776835 None:intergenic
ACATCTGATTTGGCTTTAGG+AGG 0.528612 7_2:-79776136 None:intergenic
AGGAGCAGCAGAAGGTGAAG+TGG 0.529974 7_2:-79775145 None:intergenic
ACAGGTGGCGCCGTTTGCGA+AGG 0.536548 7_2:-79776880 None:intergenic
AGAAAAGCGTGCAGATTTGG+TGG 0.540319 7_2:-79775199 None:intergenic
CTCTTAAAAGCCCCATGGCA+GGG 0.542024 7_2:+79776989 Msa1080330:CDS
GAATACAACAATGCAGGTTG+AGG 0.544649 7_2:-79776853 None:intergenic
GAAGAAGATGGTTCAACTGA+AGG 0.548422 7_2:-79776175 None:intergenic
TTAGGTAGCTTGACAGGAGG+GGG 0.550253 7_2:-79776952 None:intergenic
AGAAGGTGAAGTGGAGGACA+AGG 0.552162 7_2:-79775136 None:intergenic
GGAAGATCTACCTTCACAAA+CGG 0.553357 7_2:-79777045 None:intergenic
GGATGATAATCTGCAGGTCG+TGG 0.562572 7_2:+79780560 Msa1080330:three_prime_UTR
AGCAGCAGAAGGTGAAGTGG+AGG 0.563171 7_2:-79775142 None:intergenic
ATTTAGGTAGCTTGACAGGA+GGG 0.566371 7_2:-79776954 None:intergenic
TAGACTGGATGATAATCTGC+AGG 0.567583 7_2:+79780554 Msa1080330:three_prime_UTR
TTCACAAACGGAGGTTCACC+CGG 0.577004 7_2:-79777033 None:intergenic
CATCATTGGAAGAACCATCA+AGG 0.577639 7_2:-79776111 None:intergenic
TGTTGCGCCATCACATACTC+TGG 0.579696 7_2:+79776900 Msa1080330:CDS
TTGTGATTGAATAGAGCTGA+CGG 0.583002 7_2:+79780521 Msa1080330:exon
TCTGCCAAGCCTGAAGAAGA+TGG 0.583819 7_2:-79776187 None:intergenic
ATTCTACCGAAGTCCTGCAC+CGG 0.585909 7_2:+79777014 Msa1080330:CDS
AGTACTAATCAGGAAGAAAG+AGG 0.587578 7_2:+79776807 Msa1080330:CDS
ATAATAGCATATGATTAGGT+GGG 0.590780 7_2:-79775377 None:intergenic
GGTTGTGAATACAACAATGC+AGG 0.591023 7_2:-79776859 None:intergenic
GTGGGAGACGAAGTAAAGAA+GGG 0.592291 7_2:+79777134 Msa1080330:CDS
TTTAGGTAGCTTGACAGGAG+GGG 0.592826 7_2:-79776953 None:intergenic
GAAGCTGCAACAGTAACAGT+AGG 0.602939 7_2:-79775165 None:intergenic
TTGGAATTAGGAGAGAGACG+AGG 0.607140 7_2:-79775240 None:intergenic
GGTTCAACTGAAGGTGCGGT+CGG 0.607776 7_2:-79776166 None:intergenic
GTATGTGATGGCGCAACAGG+TGG 0.609933 7_2:-79776895 None:intergenic
TTCTACCGAAGTCCTGCACC+GGG 0.615606 7_2:+79777015 Msa1080330:CDS
ATCATTGGAAGAACCATCAA+GGG 0.616659 7_2:-79776110 None:intergenic
AATGTTTACCTCATTTAACT+GGG 0.618081 7_2:-79775415 None:intergenic
AGGTGAAGTGGAGGACAAGG+AGG 0.619998 7_2:-79775133 None:intergenic
GGAAGAGCCAGAGTATGTGA+TGG 0.623698 7_2:-79776907 None:intergenic
CTATGCAGGCTGATAAGTCA+GGG 0.634299 7_2:+79780349 Msa1080330:intron
GGTTAAGGCCCAGTTAAATG+AGG 0.635624 7_2:+79775407 Msa1080330:CDS
GGGTGAACCTCCGTTTGTGA+AGG 0.635773 7_2:+79777035 Msa1080330:CDS
TCATATGCTATTATGCCCCA+GGG 0.636266 7_2:+79775386 Msa1080330:CDS
GACTATAGTTGAAATAATCG+CGG 0.639005 7_2:+79780371 Msa1080330:CDS
GATTTAGGTAGCTTGACAGG+AGG 0.644259 7_2:-79776955 None:intergenic
CGTGGTAGTTGAGTAGTGTG+AGG 0.652911 7_2:+79780578 Msa1080330:three_prime_UTR
TCCGCCTCTTAAAAGCCCCA+TGG 0.655613 7_2:+79776984 Msa1080330:CDS
AGATGGTTCAACTGAAGGTG+CGG 0.664821 7_2:-79776170 None:intergenic
TTAACTGGGCCTTAACCCTG+GGG 0.667597 7_2:-79775401 None:intergenic
GTAACAGTAGGAGCAGCAGA+AGG 0.674269 7_2:-79775153 None:intergenic
TGGGAGACGAAGTAAAGAAG+GGG 0.685600 7_2:+79777135 Msa1080330:CDS
GGTAGAATGTCCCTGCCATG+GGG 0.689727 7_2:-79776999 None:intergenic
AGATCTACCTTCACAAACGG+AGG 0.698623 7_2:-79777042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATAATATTATTTTATT+TGG + chr7_2:79777573-79777592 Msa1080330:intron 0.0%
!! TAAGAAAAATAGTAATAAAT+AGG + chr7_2:79776542-79776561 Msa1080330:intron 10.0%
!! AAGAAAAATAGTAATAAATA+GGG + chr7_2:79776543-79776562 Msa1080330:intron 10.0%
!!! AAGTTTTTATGTTATTTTTA+TGG + chr7_2:79777215-79777234 Msa1080330:intron 10.0%
!!! CTTTATTTAAATGTTGAATT+TGG + chr7_2:79777689-79777708 Msa1080330:intron 15.0%
!!! TTTCTGAATATTTTGTTTTT+CGG + chr7_2:79778967-79778986 Msa1080330:intron 15.0%
!!! GTATATTAGGTTTTTATATT+GGG - chr7_2:79779435-79779454 None:intergenic 15.0%
!!! TGTATATTAGGTTTTTATAT+TGG - chr7_2:79779436-79779455 None:intergenic 15.0%
!!! TTCTTTTTGTTTTCTTTTTT+TGG + chr7_2:79779738-79779757 Msa1080330:intron 15.0%
!!! GTTTTGTTAGTATTTAAATA+AGG + chr7_2:79779830-79779849 Msa1080330:intron 15.0%
!!! TTATTATTTTAGTTCAGAAT+AGG + chr7_2:79780117-79780136 Msa1080330:intron 15.0%
!! CGAAGTATAGATATTAATTT+AGG - chr7_2:79775308-79775327 None:intergenic 20.0%
!! AACTTTCAAAACAAGAAAAT+TGG + chr7_2:79776507-79776526 Msa1080330:intron 20.0%
!! ATCTTAAAGAACTGTTAATT+TGG + chr7_2:79776630-79776649 Msa1080330:intron 20.0%
!!! ATTCTTTGTATAATGCTTTT+TGG + chr7_2:79777083-79777102 Msa1080330:intron 20.0%
!!! TCTTAATTTCTTTTGAGAAA+TGG + chr7_2:79777428-79777447 Msa1080330:intron 20.0%
!! AACATTTAAATAAAGCAAAG+AGG - chr7_2:79777684-79777703 None:intergenic 20.0%
!!! CAGTTTTATCAATATAAACA+TGG + chr7_2:79777923-79777942 Msa1080330:intron 20.0%
!! AAATAAAAGATGTTCAAAAG+TGG + chr7_2:79778063-79778082 Msa1080330:intron 20.0%
!!! TCTTATTGTGTTAGTTTATT+AGG + chr7_2:79778156-79778175 Msa1080330:intron 20.0%
!!! TAAAACATTTTTGTGTTATG+AGG - chr7_2:79778481-79778500 None:intergenic 20.0%
!!! TTTGAATTTTGTAGAATTGT+TGG - chr7_2:79778753-79778772 None:intergenic 20.0%
!! TTAATGATGATTCGATATAT+TGG + chr7_2:79779109-79779128 Msa1080330:intron 20.0%
!! TAAGACCTTATCTTTAATAT+AGG - chr7_2:79779150-79779169 None:intergenic 20.0%
!!! TTTTGTTTTCTTTTTTTGGT+AGG + chr7_2:79779742-79779761 Msa1080330:intron 20.0%
!! TGTTCACATATTATGAAATA+TGG - chr7_2:79779809-79779828 None:intergenic 20.0%
!! ATATTTCATAATATGTGAAC+AGG + chr7_2:79779808-79779827 Msa1080330:intron 20.0%
!! ATAAGAATACAACTATTAGA+AGG - chr7_2:79779996-79780015 None:intergenic 20.0%
!!! CTTAAATTTGATTTCTAACT+TGG + chr7_2:79780223-79780242 Msa1080330:intron 20.0%
!!! TGACTTTTTTATTTGCATTT+TGG - chr7_2:79780258-79780277 None:intergenic 20.0%
!! TTGATACTGTAAGTATATTT+CGG + chr7_2:79780415-79780434 Msa1080330:intron 20.0%
!!! ATTTTTAACTTCTACATGAT+TGG + chr7_2:79780689-79780708 Msa1080330:three_prime_UTR 20.0%
!!! ATTTTTGTAAAAGAAAGGAT+GGG - chr7_2:79780863-79780882 None:intergenic 20.0%
!!! AATCCATTTTTGTAAAAGAA+AGG - chr7_2:79780868-79780887 None:intergenic 20.0%
! ATAATAGCATATGATTAGGT+GGG - chr7_2:79775380-79775399 None:intergenic 25.0%
! AATGTTTACCTCATTTAACT+GGG - chr7_2:79775418-79775437 None:intergenic 25.0%
! TCAAATAAGTCAATTCAAAC+AGG - chr7_2:79775569-79775588 None:intergenic 25.0%
!! TTTATTCAAATCTGAAGTGT+CGG + chr7_2:79775835-79775854 Msa1080330:intron 25.0%
!! TTTTCCTCATTTAATCTAAG+AGG + chr7_2:79775885-79775904 Msa1080330:intron 25.0%
! TTTCCTCATTTAATCTAAGA+GGG + chr7_2:79775886-79775905 Msa1080330:intron 25.0%
!!! ATACATTTCTATGCTGATTT+TGG + chr7_2:79776059-79776078 Msa1080330:intron 25.0%
!! CAACTATTAATTTTGAACAG+AGG - chr7_2:79776305-79776324 None:intergenic 25.0%
! AGGTATAATTAATGATGCAT+TGG - chr7_2:79776381-79776400 None:intergenic 25.0%
! TCTGACATATAATTAATGAG+GGG - chr7_2:79776413-79776432 None:intergenic 25.0%
! GTCTGACATATAATTAATGA+GGG - chr7_2:79776414-79776433 None:intergenic 25.0%
! TGTCTGACATATAATTAATG+AGG - chr7_2:79776415-79776434 None:intergenic 25.0%
! AGCACGCATTTATTAATAAT+TGG + chr7_2:79776476-79776495 Msa1080330:intron 25.0%
! TTTCAAAACAAGAAAATTGG+TGG + chr7_2:79776510-79776529 Msa1080330:intron 25.0%
! TATCAAGAAATGCGATAAAT+TGG - chr7_2:79776599-79776618 None:intergenic 25.0%
!! AAAGAACTGTTAATTTGGAA+TGG + chr7_2:79776635-79776654 Msa1080330:intron 25.0%
! TATATGAAGGATTCTTTCTT+AGG + chr7_2:79777112-79777131 Msa1080330:intron 25.0%
! TACATACTATGACTCTATAA+GGG + chr7_2:79777264-79777283 Msa1080330:intron 25.0%
! TCTTCATTTCATTTGAGAAA+TGG - chr7_2:79777302-79777321 None:intergenic 25.0%
! ACATATATTACGCATTTATG+TGG - chr7_2:79777356-79777375 None:intergenic 25.0%
! ATACACACAAAACTATAGAA+TGG + chr7_2:79777402-79777421 Msa1080330:intron 25.0%
! TTAGGATTCTCTTCATTTAA+TGG + chr7_2:79777516-79777535 Msa1080330:intron 25.0%
! GTAATATAAATCTTTACCGT+GGG - chr7_2:79777803-79777822 None:intergenic 25.0%
! AGTAATATAAATCTTTACCG+TGG - chr7_2:79777804-79777823 None:intergenic 25.0%
! TTTATGACACCAAAGTATAT+AGG + chr7_2:79777858-79777877 Msa1080330:intron 25.0%
! AAATAAGCACCTATATACTT+TGG - chr7_2:79777870-79777889 None:intergenic 25.0%
! CAAAGGAAAATCTTAATTAC+TGG + chr7_2:79777893-79777912 Msa1080330:intron 25.0%
! ACACAATAAGATTTGAAAAC+AGG - chr7_2:79778147-79778166 None:intergenic 25.0%
!! TATTGTGTTAGTTTATTAGG+AGG + chr7_2:79778159-79778178 Msa1080330:intron 25.0%
!! ATTGTGTTAGTTTATTAGGA+GGG + chr7_2:79778160-79778179 Msa1080330:intron 25.0%
! TTTGGATTGAAGAATATCAT+TGG + chr7_2:79778262-79778281 Msa1080330:intron 25.0%
!! GGTGGAATTTTAGATTTATT+GGG - chr7_2:79778616-79778635 None:intergenic 25.0%
!! AGGTGGAATTTTAGATTTAT+TGG - chr7_2:79778617-79778636 None:intergenic 25.0%
!! TAGAATTGTTGGTGAAAAAA+TGG - chr7_2:79778742-79778761 None:intergenic 25.0%
! CTGACTCAAAAACATAAATT+CGG + chr7_2:79778889-79778908 Msa1080330:intron 25.0%
! GTGATATATTCTGAATATCT+TGG + chr7_2:79779060-79779079 Msa1080330:intron 25.0%
! CATTAAGCTAGTGATTTATT+TGG - chr7_2:79779095-79779114 None:intergenic 25.0%
! ACCTTATCTTTAATATAGGT+GGG - chr7_2:79779146-79779165 None:intergenic 25.0%
! TTACTAGAGTTTATAAAGAG+TGG + chr7_2:79779167-79779186 Msa1080330:intron 25.0%
!! CCATATTAGGTTTTTATACA+AGG - chr7_2:79779234-79779253 None:intergenic 25.0%
! CCTTGTATAAAAACCTAATA+TGG + chr7_2:79779231-79779250 Msa1080330:intron 25.0%
! AGTTATTGTTTCATGGTTAA+AGG - chr7_2:79779611-79779630 None:intergenic 25.0%
!! CTTTTCTCAATTTGATTACT+TGG - chr7_2:79779653-79779672 None:intergenic 25.0%
! TTTGTTCCTATTCTCTTTAA+CGG + chr7_2:79779766-79779785 Msa1080330:intron 25.0%
! TTGATGCAATGTTTATTGTA+TGG - chr7_2:79780186-79780205 None:intergenic 25.0%
! CTCTATTCAATCACAAATAA+GGG - chr7_2:79780517-79780536 None:intergenic 25.0%
!!! AGGAAGATTTTGTTTTGAAT+TGG + chr7_2:79780606-79780625 Msa1080330:three_prime_UTR 25.0%
! AGAAGTTAAAAATATGCGTA+GGG - chr7_2:79780682-79780701 None:intergenic 25.0%
! TAGAAGTTAAAAATATGCGT+AGG - chr7_2:79780683-79780702 None:intergenic 25.0%
! AGCTTAAAAAGAAACTAGAA+TGG - chr7_2:79780800-79780819 None:intergenic 25.0%
!!! TCTAGTTTCTTTTTAAGCTT+AGG + chr7_2:79780801-79780820 Msa1080330:three_prime_UTR 25.0%
!!! CTAGTTTCTTTTTAAGCTTA+GGG + chr7_2:79780802-79780821 Msa1080330:three_prime_UTR 25.0%
!!! TAGTTTCTTTTTAAGCTTAG+GGG + chr7_2:79780803-79780822 Msa1080330:three_prime_UTR 25.0%
!! CATTTTTGTAAAAGAAAGGA+TGG - chr7_2:79780864-79780883 None:intergenic 25.0%
!! CATCCTTTCTTTTACAAAAA+TGG + chr7_2:79780862-79780881 Msa1080330:three_prime_UTR 25.0%
!!! TTTTACAAAAATGGATTCAC+TGG + chr7_2:79780871-79780890 Msa1080330:three_prime_UTR 25.0%
!!! AAGCAAGTTTTGATTGATGT+CGG - chr7_2:79775085-79775104 None:intergenic 30.0%
! TTCAGTTTGAGTTTGATTCA+TGG + chr7_2:79775107-79775126 Msa1080330:exon 30.0%
GAAGATAAAATGTGATACCT+TGG - chr7_2:79775286-79775305 None:intergenic 30.0%
ATTTATGTATGTCTCTGTGT+AGG + chr7_2:79775350-79775369 Msa1080330:intron 30.0%
TTTATGTATGTCTCTGTGTA+GGG + chr7_2:79775351-79775370 Msa1080330:intron 30.0%
CATAATAGCATATGATTAGG+TGG - chr7_2:79775381-79775400 None:intergenic 30.0%
GAATGTTTACCTCATTTAAC+TGG - chr7_2:79775419-79775438 None:intergenic 30.0%
GATAGATATGGAGTGTAAAA+GGG - chr7_2:79775443-79775462 None:intergenic 30.0%
TGATAGATATGGAGTGTAAA+AGG - chr7_2:79775444-79775463 None:intergenic 30.0%
!! AACACTTTGAGAGACTATTT+TGG + chr7_2:79775606-79775625 Msa1080330:intron 30.0%
ACACAATTACAGTCATTGAT+TGG + chr7_2:79775928-79775947 Msa1080330:intron 30.0%
! TCTATCAAGAGAACAGATTT+TGG - chr7_2:79776013-79776032 None:intergenic 30.0%
CATAGAAATGTATGTCTATG+TGG - chr7_2:79776052-79776071 None:intergenic 30.0%
!! TGATTTTGGTCTCTCTTTTT+TGG + chr7_2:79776073-79776092 Msa1080330:intron 30.0%
TTAATGAGGGGAAAATAAGA+AGG - chr7_2:79776401-79776420 None:intergenic 30.0%
!! AATGCGTGCTTGATAATTTT+TGG - chr7_2:79776466-79776485 None:intergenic 30.0%
GCTAAAACTATTATGTCCAT+TGG + chr7_2:79776573-79776592 Msa1080330:intron 30.0%
! TAAACTGTGAAGTACTAATC+AGG + chr7_2:79776797-79776816 Msa1080330:CDS 30.0%
!! TTTTTGGCAGCTTTATATGA+AGG + chr7_2:79777099-79777118 Msa1080330:intron 30.0%
!! GTAACTGCTGTCTAAAATTT+TGG + chr7_2:79777237-79777256 Msa1080330:intron 30.0%
CTACATACTATGACTCTATA+AGG + chr7_2:79777263-79777282 Msa1080330:intron 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG + chr7_2:79777433-79777452 Msa1080330:intron 30.0%
!! ATTTAATGGAAAGTGCCATT+TGG + chr7_2:79777530-79777549 Msa1080330:intron 30.0%
AAATGGCACTTTCCATTAAA+CGG + chr7_2:79777644-79777663 Msa1080330:intron 30.0%
AAATAAAGCAAAGAGGAGTT+GGG - chr7_2:79777677-79777696 None:intergenic 30.0%
TAAATAAAGCAAAGAGGAGT+TGG - chr7_2:79777678-79777697 None:intergenic 30.0%
CTATATAATGTACGACATGA+TGG + chr7_2:79777716-79777735 Msa1080330:intron 30.0%
! GTTTGTATTTTTCTTTCCCA+CGG + chr7_2:79777784-79777803 Msa1080330:intron 30.0%
!!! ATAGGTGCTTATTTTTGCAA+AGG + chr7_2:79777876-79777895 Msa1080330:intron 30.0%
GACAGATATAATAGGTGTTA+GGG + chr7_2:79777970-79777989 Msa1080330:intron 30.0%
!!! TGGTCATTGTATTTTGATTG+TGG + chr7_2:79778093-79778112 Msa1080330:intron 30.0%
TTTGAAAACAGGCTTGAATT+GGG - chr7_2:79778136-79778155 None:intergenic 30.0%
ATTTGAAAACAGGCTTGAAT+TGG - chr7_2:79778137-79778156 None:intergenic 30.0%
AACATGTTAGGTAGACAATT+AGG + chr7_2:79778216-79778235 Msa1080330:intron 30.0%
ACATGTTAGGTAGACAATTA+GGG + chr7_2:79778217-79778236 Msa1080330:intron 30.0%
TATCATTGGAATGAAAGAAG+AGG + chr7_2:79778276-79778295 Msa1080330:intron 30.0%
!! TTGTTGCGAAAGTTTTGTAT+TGG + chr7_2:79778413-79778432 Msa1080330:intron 30.0%
!! GAATAAAGAGAGTTCTGAAA+AGG + chr7_2:79778442-79778461 Msa1080330:intron 30.0%
TCCTTGGTTATTCAAACAAA+GGG - chr7_2:79778508-79778527 None:intergenic 30.0%
TTCCTTGGTTATTCAAACAA+AGG - chr7_2:79778509-79778528 None:intergenic 30.0%
TTCTACAAAATTCAAACGTG+AGG + chr7_2:79778757-79778776 Msa1080330:intron 30.0%
TCTACAAAATTCAAACGTGA+GGG + chr7_2:79778758-79778777 Msa1080330:intron 30.0%
!!! TTTTAGTTTTTACCACACTC+TGG + chr7_2:79778914-79778933 Msa1080330:intron 30.0%
CAGAAAAACAAAATAGAGCA+AGG - chr7_2:79778953-79778972 None:intergenic 30.0%
GATATTCAGAATATATCACC+AGG - chr7_2:79779059-79779078 None:intergenic 30.0%
AGTGATTTATTTGGATGTTC+AGG - chr7_2:79779086-79779105 None:intergenic 30.0%
TCCCACCTATATTAAAGATA+AGG + chr7_2:79779142-79779161 Msa1080330:intron 30.0%
GACCTTATCTTTAATATAGG+TGG - chr7_2:79779147-79779166 None:intergenic 30.0%
!! TCTAACTCATCCTTTAAAAC+CGG - chr7_2:79779211-79779230 None:intergenic 30.0%
GGTAAGTGTATATAAACGAT+GGG - chr7_2:79779282-79779301 None:intergenic 30.0%
TGGTAAGTGTATATAAACGA+TGG - chr7_2:79779283-79779302 None:intergenic 30.0%
GTCTTATCCTTAATCTATGT+GGG - chr7_2:79779349-79779368 None:intergenic 30.0%
ACTCTTTATAAACTCTAGTC+AGG - chr7_2:79779371-79779390 None:intergenic 30.0%
!! TTGTTTTGTAAGGATGAGTT+AGG + chr7_2:79779409-79779428 Msa1080330:intron 30.0%
CCAAGCTATGTTTGTATATT+AGG - chr7_2:79779448-79779467 None:intergenic 30.0%
CCTAATATACAAACATAGCT+TGG + chr7_2:79779445-79779464 Msa1080330:intron 30.0%
CTCAGTAAGTTATTGTTTCA+TGG - chr7_2:79779618-79779637 None:intergenic 30.0%
AAATATGGACTTCTGCATAA+AGG - chr7_2:79779794-79779813 None:intergenic 30.0%
!!! ACGTGTAGGTTTTTTTGTTA+AGG + chr7_2:79779899-79779918 Msa1080330:intron 30.0%
ACTATATTTGTGTACTATGC+AGG + chr7_2:79780335-79780354 Msa1080330:intron 30.0%
GACTATAGTTGAAATAATCG+CGG + chr7_2:79780371-79780390 Msa1080330:CDS 30.0%
AAATCAAACCTCTAATGACA+AGG - chr7_2:79780477-79780496 None:intergenic 30.0%
GCTCTATTCAATCACAAATA+AGG - chr7_2:79780518-79780537 None:intergenic 30.0%
!!! GATTTTGTTTTGAATTGGAG+TGG + chr7_2:79780611-79780630 Msa1080330:three_prime_UTR 30.0%
TACATGATTGGACTATGTTT+CGG + chr7_2:79780701-79780720 Msa1080330:three_prime_UTR 30.0%
! TTTCGGTGAACTTTTCTTTT+TGG + chr7_2:79780718-79780737 Msa1080330:three_prime_UTR 30.0%
! TTACTGTTTTGTGTTCAGTG+GGG - chr7_2:79775042-79775061 None:intergenic 35.0%
! CTTACTGTTTTGTGTTCAGT+GGG - chr7_2:79775043-79775062 None:intergenic 35.0%
! ACTTACTGTTTTGTGTTCAG+TGG - chr7_2:79775044-79775063 None:intergenic 35.0%
GGGCATAATAGCATATGATT+AGG - chr7_2:79775384-79775403 None:intergenic 35.0%
! TGTCTGTGTGTTGATAGATA+TGG - chr7_2:79775455-79775474 None:intergenic 35.0%
CTACGTGTCAATATCATGTT+CGG - chr7_2:79775484-79775503 None:intergenic 35.0%
GTAAGCGCTTATCATGAATA+GGG - chr7_2:79775792-79775811 None:intergenic 35.0%
ATGCCCTCTTAGATTAAATG+AGG - chr7_2:79775892-79775911 None:intergenic 35.0%
!!! AATCTAAGAGGGCATTTTAG+AGG + chr7_2:79775897-79775916 Msa1080330:intron 35.0%
!!! TCTCTTTTTTGGCTTCAACA+AGG + chr7_2:79776084-79776103 Msa1080330:intron 35.0%
ATCATTGGAAGAACCATCAA+GGG - chr7_2:79776113-79776132 None:intergenic 35.0%
!! TCAACATCTGATTTGGCTTT+AGG - chr7_2:79776142-79776161 None:intergenic 35.0%
AAATGCGATAAATTGGCCAA+TGG - chr7_2:79776592-79776611 None:intergenic 35.0%
! GAACTGTTAATTTGGAATGG+AGG + chr7_2:79776638-79776657 Msa1080330:intron 35.0%
!! ATGGAGGAAGTACTTATTGT+TGG + chr7_2:79776654-79776673 Msa1080330:intron 35.0%
CTGCAGTAGAAAAATACACA+AGG - chr7_2:79776733-79776752 None:intergenic 35.0%
! CTTGTGTATTTTTCTACTGC+AGG + chr7_2:79776731-79776750 Msa1080330:intron 35.0%
AGTACTAATCAGGAAGAAAG+AGG + chr7_2:79776807-79776826 Msa1080330:CDS 35.0%
ATGAAGGATTCTTTCTTAGG+TGG + chr7_2:79777115-79777134 Msa1080330:intron 35.0%
TGAAGGATTCTTTCTTAGGT+GGG + chr7_2:79777116-79777135 Msa1080330:intron 35.0%
TTCTTTCTCTTTGCTGAGTT+AGG + chr7_2:79777498-79777517 Msa1080330:intron 35.0%
TGAGTTTATCTCTCTCCAAA+TGG - chr7_2:79777548-79777567 None:intergenic 35.0%
TGAGTCTATCTTCCTCTAAA+TGG + chr7_2:79777627-79777646 Msa1080330:intron 35.0%
!! TAATGGAAAGTGCCATTTAG+AGG - chr7_2:79777642-79777661 None:intergenic 35.0%
TCAATATAAACATGGCGTTG+CGG + chr7_2:79777931-79777950 Msa1080330:intron 35.0%
CGAAACACGACAGATATAAT+AGG + chr7_2:79777962-79777981 Msa1080330:intron 35.0%
CGACAGATATAATAGGTGTT+AGG + chr7_2:79777969-79777988 Msa1080330:intron 35.0%
GATCTTGTGTCAGTCATTAT+TGG - chr7_2:79777996-79778015 None:intergenic 35.0%
! ATTTTGTCAAATTTCTGCCG+TGG - chr7_2:79778034-79778053 None:intergenic 35.0%
ACGGCAGAAATTTGACAAAA+TGG + chr7_2:79778033-79778052 Msa1080330:intron 35.0%
TGTTCAAAAGTGGAGTAGAA+TGG + chr7_2:79778073-79778092 Msa1080330:intron 35.0%
ATGACTACTAGGAACATGTT+AGG + chr7_2:79778204-79778223 Msa1080330:intron 35.0%
AAACAACCGAAACTAAAGTG+AGG + chr7_2:79778334-79778353 Msa1080330:intron 35.0%
AACTTTCGCAACAATGAAGA+GGG - chr7_2:79778407-79778426 None:intergenic 35.0%
AAACTTTCGCAACAATGAAG+AGG - chr7_2:79778408-79778427 None:intergenic 35.0%
! TCCCTTTGTTTGAATAACCA+AGG + chr7_2:79778504-79778523 Msa1080330:intron 35.0%
!!! TGGTTCTTTCAAGTTTTCCT+TGG - chr7_2:79778524-79778543 None:intergenic 35.0%
! TTTGGGAAAGGCTTGTTTAA+TGG - chr7_2:79778569-79778588 None:intergenic 35.0%
GTGTTACATATGTTGTTCTG+CGG - chr7_2:79778652-79778671 None:intergenic 35.0%
TTCTTGTTGAACAAGTTCCA+AGG - chr7_2:79778696-79778715 None:intergenic 35.0%
! TTTCAGGTCTATGAATCTGT+GGG + chr7_2:79778838-79778857 Msa1080330:intron 35.0%
! GTAGTTGGTATAAGCCTATA+AGG + chr7_2:79779006-79779025 Msa1080330:intron 35.0%
! AAACAACAGCTAAGCCTTAT+AGG - chr7_2:79779023-79779042 None:intergenic 35.0%
TTCAGAATATATCACCAGGT+AGG - chr7_2:79779055-79779074 None:intergenic 35.0%
TCTTTAATATAGGTGGGACT+TGG - chr7_2:79779140-79779159 None:intergenic 35.0%
!! ACCTTGAAATCCGGTTTTAA+AGG + chr7_2:79779198-79779217 Msa1080330:intron 35.0%
!! TCCTTTAAAACCGGATTTCA+AGG - chr7_2:79779202-79779221 None:intergenic 35.0%
AAGTGTATATAAACGATGGG+TGG - chr7_2:79779279-79779298 None:intergenic 35.0%
AACAAGTCCCACATAGATTA+AGG + chr7_2:79779339-79779358 Msa1080330:intron 35.0%
! GGTCTTATCCTTAATCTATG+TGG - chr7_2:79779350-79779369 None:intergenic 35.0%
CCTTACAAAACAAGTGTTCA+AGG - chr7_2:79779402-79779421 None:intergenic 35.0%
!!! CCTTGAACACTTGTTTTGTA+AGG + chr7_2:79779399-79779418 Msa1080330:intron 35.0%
CAAACATAGCTTGGAAACTT+AGG + chr7_2:79779454-79779473 Msa1080330:intron 35.0%
!!! AACTGTGGTTTTATTGTCGA+GGG - chr7_2:79779579-79779598 None:intergenic 35.0%
!!! TAACTGTGGTTTTATTGTCG+AGG - chr7_2:79779580-79779599 None:intergenic 35.0%
!! TAAAGGCATCACTATAACTG+TGG - chr7_2:79779594-79779613 None:intergenic 35.0%
AAGCTGAATGAGACACATAA+AGG + chr7_2:79779670-79779689 Msa1080330:intron 35.0%
! TATAGGTGGATTTATTCCTC+AGG + chr7_2:79779708-79779727 Msa1080330:intron 35.0%
CAAAAAGAACAATCATCCTG+AGG - chr7_2:79779727-79779746 None:intergenic 35.0%
AAGGAACCGTTAAAGAGAAT+AGG - chr7_2:79779775-79779794 None:intergenic 35.0%
!! ACAAGTTTGTTAACACGTGT+AGG + chr7_2:79779885-79779904 Msa1080330:intron 35.0%
!!! ACTTCACTTCACTGTTTTTG+TGG + chr7_2:79780143-79780162 Msa1080330:intron 35.0%
!!! CTTCACTTCACTGTTTTTGT+GGG + chr7_2:79780144-79780163 Msa1080330:intron 35.0%
!!! TTCACTGTTTTTGTGGGTTA+TGG + chr7_2:79780150-79780169 Msa1080330:intron 35.0%
CTTGTGAGTACTAGTCAATA+GGG - chr7_2:79780442-79780461 None:intergenic 35.0%
ACTTGTGAGTACTAGTCAAT+AGG - chr7_2:79780443-79780462 None:intergenic 35.0%
ACCAATATCCTTGTCATTAG+AGG + chr7_2:79780466-79780485 Msa1080330:intron 35.0%
ACCTCTAATGACAAGGATAT+TGG - chr7_2:79780470-79780489 None:intergenic 35.0%
TTGTGATTGAATAGAGCTGA+CGG + chr7_2:79780521-79780540 Msa1080330:exon 35.0%
GTTAAAAATATGCGTAGGGT+GGG - chr7_2:79780678-79780697 None:intergenic 35.0%
AGTTAAAAATATGCGTAGGG+TGG - chr7_2:79780679-79780698 None:intergenic 35.0%
TGTCGGATCGATGAAATCTA+AGG - chr7_2:79775068-79775087 None:intergenic 40.0%
! ATGAGAAAAGCGTGCAGATT+TGG - chr7_2:79775205-79775224 None:intergenic 40.0%
GTGATACCTTGGTGAAAAAG+CGG - chr7_2:79775275-79775294 None:intergenic 40.0%
ATCATATGCTATTATGCCCC+AGG + chr7_2:79775385-79775404 Msa1080330:CDS 40.0%
TCATATGCTATTATGCCCCA+GGG + chr7_2:79775386-79775405 Msa1080330:CDS 40.0%
AACCATATGTGTTGCAGTGT+CGG + chr7_2:79775508-79775527 Msa1080330:intron 40.0%
!! CATGTTCGTAAGCTGTTTTC+AGG + chr7_2:79775659-79775678 Msa1080330:intron 40.0%
CGTAAGCGCTTATCATGAAT+AGG - chr7_2:79775793-79775812 None:intergenic 40.0%
CATCATTGGAAGAACCATCA+AGG - chr7_2:79776114-79776133 None:intergenic 40.0%
!! ACATCTGATTTGGCTTTAGG+AGG - chr7_2:79776139-79776158 None:intergenic 40.0%
GAAGAAGATGGTTCAACTGA+AGG - chr7_2:79776178-79776197 None:intergenic 40.0%
TCAGTTGAACCATCTTCTTC+AGG + chr7_2:79776178-79776197 Msa1080330:CDS 40.0%
AGTTCAAGATTGAAGCAGCT+GGG - chr7_2:79776268-79776287 None:intergenic 40.0%
AAGTTCAAGATTGAAGCAGC+TGG - chr7_2:79776269-79776288 None:intergenic 40.0%
GAATACAACAATGCAGGTTG+AGG - chr7_2:79776856-79776875 None:intergenic 40.0%
GGTTGTGAATACAACAATGC+AGG - chr7_2:79776862-79776881 None:intergenic 40.0%
GTATTCACAACCTTCGCAAA+CGG + chr7_2:79776870-79776889 Msa1080330:CDS 40.0%
ATTTAGGTAGCTTGACAGGA+GGG - chr7_2:79776957-79776976 None:intergenic 40.0%
GATGATTTAGGTAGCTTGAC+AGG - chr7_2:79776961-79776980 None:intergenic 40.0%
GGAAGATCTACCTTCACAAA+CGG - chr7_2:79777048-79777067 None:intergenic 40.0%
CAGCAAAGAGAAAGAAAGAG+AGG - chr7_2:79777494-79777513 None:intergenic 40.0%
GCACTTTCCATTAAACGGAT+AGG + chr7_2:79777649-79777668 Msa1080330:intron 40.0%
TTGGGATCCTATCCGTTTAA+TGG - chr7_2:79777659-79777678 None:intergenic 40.0%
AACAGGCTTGAATTGGGAAA+TGG - chr7_2:79778130-79778149 None:intergenic 40.0%
TGAGCTGCATAATGACTACT+AGG + chr7_2:79778193-79778212 Msa1080330:intron 40.0%
! AACATCACTTGCTGAGTTGA+CGG - chr7_2:79778244-79778263 None:intergenic 40.0%
TCAACTCAGCAAGTGATGTT+TGG + chr7_2:79778244-79778263 Msa1080330:intron 40.0%
!! GAATGAAAGAAGAGGCATCA+AGG + chr7_2:79778284-79778303 Msa1080330:intron 40.0%
! TCTCTGCCTCACTTTAGTTT+CGG - chr7_2:79778343-79778362 None:intergenic 40.0%
TCACTCTAGTGCTCTTCAAA+TGG - chr7_2:79778544-79778563 None:intergenic 40.0%
CCTTTCCCAAAACAAGTCTA+GGG + chr7_2:79778578-79778597 Msa1080330:intron 40.0%
CTTTCCCAAAACAAGTCTAG+GGG + chr7_2:79778579-79778598 Msa1080330:intron 40.0%
!! TTCACCCCTAGACTTGTTTT+GGG - chr7_2:79778586-79778605 None:intergenic 40.0%
AAGAATTACTGCAAGCTCTG+TGG + chr7_2:79778711-79778730 Msa1080330:intron 40.0%
AGAATTACTGCAAGCTCTGT+GGG + chr7_2:79778712-79778731 Msa1080330:intron 40.0%
AAAATTCAAACGTGAGGGCT+AGG + chr7_2:79778763-79778782 Msa1080330:intron 40.0%
! CTTTCAGGTCTATGAATCTG+TGG + chr7_2:79778837-79778856 Msa1080330:intron 40.0%
AAAATAGAGCAAGGCATACC+AGG - chr7_2:79778944-79778963 None:intergenic 40.0%
TATACCAACTACTGAGGAGA+CGG - chr7_2:79778998-79779017 None:intergenic 40.0%
TAGGCTTATACCAACTACTG+AGG - chr7_2:79779004-79779023 None:intergenic 40.0%
! AAGGCTTAGCTGTTGTTTGT+TGG + chr7_2:79779025-79779044 Msa1080330:intron 40.0%
AAACCGGATTTCAAGGTGAA+GGG - chr7_2:79779195-79779214 None:intergenic 40.0%
AAAACCGGATTTCAAGGTGA+AGG - chr7_2:79779196-79779215 None:intergenic 40.0%
TTACCAAGTCCAATAGTGCT+GGG + chr7_2:79779297-79779316 Msa1080330:intron 40.0%
!!! ACTGTGGTTTTATTGTCGAG+GGG - chr7_2:79779578-79779597 None:intergenic 40.0%
CTGAATGAGACACATAAAGG+AGG + chr7_2:79779673-79779692 Msa1080330:intron 40.0%
! GGAGGAAAGAGAAAGCATAT+AGG + chr7_2:79779691-79779710 Msa1080330:intron 40.0%
! GGAAAGAGAAAGCATATAGG+TGG + chr7_2:79779694-79779713 Msa1080330:intron 40.0%
CTTACAGTATCAACGCTTAC+AGG - chr7_2:79780408-79780427 None:intergenic 40.0%
ATCACAAATAAGGGCTGCAA+GGG - chr7_2:79780508-79780527 None:intergenic 40.0%
AATCACAAATAAGGGCTGCA+AGG - chr7_2:79780509-79780528 None:intergenic 40.0%
TAGACTGGATGATAATCTGC+AGG + chr7_2:79780554-79780573 Msa1080330:three_prime_UTR 40.0%
!! TTTTAAGCTTAGGGGAGCAT+TGG + chr7_2:79780811-79780830 Msa1080330:three_prime_UTR 40.0%
GAAGCTGCAACAGTAACAGT+AGG - chr7_2:79775168-79775187 None:intergenic 45.0%
! AGAAAAGCGTGCAGATTTGG+TGG - chr7_2:79775202-79775221 None:intergenic 45.0%
TGGAATTAGGAGAGAGACGA+GGG - chr7_2:79775242-79775261 None:intergenic 45.0%
TTGGAATTAGGAGAGAGACG+AGG - chr7_2:79775243-79775262 None:intergenic 45.0%
CGGAGAGAGTTGTTGGAATT+AGG - chr7_2:79775255-79775274 None:intergenic 45.0%
GAAAAAGCGGAGAGAGTTGT+TGG - chr7_2:79775262-79775281 None:intergenic 45.0%
TTTAACTGGGCCTTAACCCT+GGG - chr7_2:79775405-79775424 None:intergenic 45.0%
ATTTAACTGGGCCTTAACCC+TGG - chr7_2:79775406-79775425 None:intergenic 45.0%
GGTTAAGGCCCAGTTAAATG+AGG + chr7_2:79775407-79775426 Msa1080330:CDS 45.0%
TACCGACACTGCAACACATA+TGG - chr7_2:79775513-79775532 None:intergenic 45.0%
TTCAACAAGGTTGCCCTTGA+TGG + chr7_2:79776097-79776116 Msa1080330:intron 45.0%
CGGTGGTTCAACATCTGATT+TGG - chr7_2:79776149-79776168 None:intergenic 45.0%
AGATGGTTCAACTGAAGGTG+CGG - chr7_2:79776173-79776192 None:intergenic 45.0%
TGAACCATCTTCTTCAGGCT+TGG + chr7_2:79776183-79776202 Msa1080330:CDS 45.0%
! TGAGGAGCATATTCTGGTTG+AGG - chr7_2:79776838-79776857 None:intergenic 45.0%
TTTAGGTAGCTTGACAGGAG+GGG - chr7_2:79776956-79776975 None:intergenic 45.0%
GATTTAGGTAGCTTGACAGG+AGG - chr7_2:79776958-79776977 None:intergenic 45.0%
AGATCTACCTTCACAAACGG+AGG - chr7_2:79777045-79777064 None:intergenic 45.0%
GTGGGAGACGAAGTAAAGAA+GGG + chr7_2:79777134-79777153 Msa1080330:CDS 45.0%
TGGGAGACGAAGTAAAGAAG+GGG + chr7_2:79777135-79777154 Msa1080330:CDS 45.0%
TGAACAAGTGCATCCTACAG+AGG - chr7_2:79777468-79777487 None:intergenic 45.0%
ATCTGTCGTGTTTCGTCCAT+AGG - chr7_2:79777957-79777976 None:intergenic 45.0%
!! TGAAAGAAGAGGCATCAAGG+AGG + chr7_2:79778287-79778306 Msa1080330:intron 45.0%
!! AAGAGGCATCAAGGAGGTTA+AGG + chr7_2:79778293-79778312 Msa1080330:intron 45.0%
GCCTTTCCCAAAACAAGTCT+AGG + chr7_2:79778577-79778596 Msa1080330:intron 45.0%
!!! CCCTAGACTTGTTTTGGGAA+AGG - chr7_2:79778581-79778600 None:intergenic 45.0%
!! CTTCACCCCTAGACTTGTTT+TGG - chr7_2:79778587-79778606 None:intergenic 45.0%
ATGTTGTTCTGCGGCATCTT+CGG - chr7_2:79778643-79778662 None:intergenic 45.0%
! GATGTGTGCTGCTCTAGTTA+AGG - chr7_2:79778811-79778830 None:intergenic 45.0%
GCACACATCACATGACTTTC+AGG + chr7_2:79778822-79778841 Msa1080330:intron 45.0%
!!! TTACCACACTCTGGTTTTCC+TGG + chr7_2:79778923-79778942 Msa1080330:intron 45.0%
ATACCAGGAAAACCAGAGTG+TGG - chr7_2:79778929-79778948 None:intergenic 45.0%
ATACCAACTACTGAGGAGAC+GGG - chr7_2:79778997-79779016 None:intergenic 45.0%
!! TGTTTGTTGGTAGTCCTACC+TGG + chr7_2:79779038-79779057 Msa1080330:intron 45.0%
! GTAGGCTCTGATGCCATATT+AGG - chr7_2:79779247-79779266 None:intergenic 45.0%
CTTACCAAGTCCAATAGTGC+TGG + chr7_2:79779296-79779315 Msa1080330:intron 45.0%
ACTATGCAGGCTGATAAGTC+AGG + chr7_2:79780348-79780367 Msa1080330:intron 45.0%
CTATGCAGGCTGATAAGTCA+GGG + chr7_2:79780349-79780368 Msa1080330:intron 45.0%
! GACGGAGTATTCAAGTAGAC+TGG + chr7_2:79780539-79780558 Msa1080330:three_prime_UTR 45.0%
TTGAGTAGTGTGAGGCGTAT+AGG + chr7_2:79780586-79780605 Msa1080330:three_prime_UTR 45.0%
!!! TTTTTATTTTTTTTTACTTT+TGG - chr7_2:79776333-79776352 None:intergenic 5.0%
!! AAGAATAATATATAATTAAA+CGG - chr7_2:79777069-79777088 None:intergenic 5.0%
AGAAGGTGAAGTGGAGGACA+AGG - chr7_2:79775139-79775158 None:intergenic 50.0%
GTAACAGTAGGAGCAGCAGA+AGG - chr7_2:79775156-79775175 None:intergenic 50.0%
AGAGAGACGAGGGAAAGTGA+TGG - chr7_2:79775232-79775251 None:intergenic 50.0%
!!! CTCTCTCCGCTTTTTCACCA+AGG + chr7_2:79775266-79775285 Msa1080330:CDS 50.0%
GCTATTATGCCCCAGGGTTA+AGG + chr7_2:79775392-79775411 Msa1080330:CDS 50.0%
TTAACTGGGCCTTAACCCTG+GGG - chr7_2:79775404-79775423 None:intergenic 50.0%
TGTGTCAGACATCACCTGAG+AGG + chr7_2:79775540-79775559 Msa1080330:intron 50.0%
ATTCAAACAGGACGCCTCTC+AGG - chr7_2:79775557-79775576 None:intergenic 50.0%
!! GGCTTTAGGAGGCACATCAT+TGG - chr7_2:79776128-79776147 None:intergenic 50.0%
TCTGCCAAGCCTGAAGAAGA+TGG - chr7_2:79776190-79776209 None:intergenic 50.0%
! GCAGGTTGAGGAGCATATTC+TGG - chr7_2:79776844-79776863 None:intergenic 50.0%
! AGAGTATGTGATGGCGCAAC+AGG - chr7_2:79776901-79776920 None:intergenic 50.0%
TGTTGCGCCATCACATACTC+TGG + chr7_2:79776900-79776919 Msa1080330:CDS 50.0%
GGAAGAGCCAGAGTATGTGA+TGG - chr7_2:79776910-79776929 None:intergenic 50.0%
TTAGGTAGCTTGACAGGAGG+GGG - chr7_2:79776955-79776974 None:intergenic 50.0%
AGAGGCGGACGTGATGATTT+AGG - chr7_2:79776973-79776992 None:intergenic 50.0%
CTCTTAAAAGCCCCATGGCA+GGG + chr7_2:79776989-79777008 Msa1080330:CDS 50.0%
ATTCTACCGAAGTCCTGCAC+CGG + chr7_2:79777014-79777033 Msa1080330:CDS 50.0%
TTCACAAACGGAGGTTCACC+CGG - chr7_2:79777036-79777055 None:intergenic 50.0%
GGTGGGAGACGAAGTAAAGA+AGG + chr7_2:79777133-79777152 Msa1080330:intron 50.0%
GAGGATTCCTACTCCTCTGT+AGG + chr7_2:79777452-79777471 Msa1080330:intron 50.0%
AGTGCATCCTACAGAGGAGT+AGG - chr7_2:79777462-79777481 None:intergenic 50.0%
TCCACCATGCTAAAACGCCA+CGG + chr7_2:79778014-79778033 Msa1080330:intron 50.0%
CGCAACAATGAAGAGGGTCA+AGG - chr7_2:79778401-79778420 None:intergenic 50.0%
CCAAGGAGAGCAAGATGTTC+TGG - chr7_2:79778679-79778698 None:intergenic 50.0%
CCAGAACATCTTGCTCTCCT+TGG + chr7_2:79778676-79778695 Msa1080330:intron 50.0%
TACCAACTACTGAGGAGACG+GGG - chr7_2:79778996-79779015 None:intergenic 50.0%
GCACCCTTCACCTTGAAATC+CGG + chr7_2:79779189-79779208 Msa1080330:intron 50.0%
ATGCCCAGCACTATTGGACT+TGG - chr7_2:79779303-79779322 None:intergenic 50.0%
! CAATAGTGCTGGGCATGAGA+GGG + chr7_2:79779307-79779326 Msa1080330:intron 50.0%
GGATGATAATCTGCAGGTCG+TGG + chr7_2:79780560-79780579 Msa1080330:three_prime_UTR 50.0%
CGTGGTAGTTGAGTAGTGTG+AGG + chr7_2:79780578-79780597 Msa1080330:three_prime_UTR 50.0%
AGGTGAAGTGGAGGACAAGG+AGG - chr7_2:79775136-79775155 None:intergenic 55.0%
AGCAGCAGAAGGTGAAGTGG+AGG - chr7_2:79775145-79775164 None:intergenic 55.0%
AGGAGCAGCAGAAGGTGAAG+TGG - chr7_2:79775148-79775167 None:intergenic 55.0%
GAGACGAGGGAAAGTGATGG+AGG - chr7_2:79775229-79775248 None:intergenic 55.0%
! GGTTCAACTGAAGGTGCGGT+CGG - chr7_2:79776169-79776188 None:intergenic 55.0%
! GTATGTGATGGCGCAACAGG+TGG - chr7_2:79776898-79776917 None:intergenic 55.0%
! GAAGTTGGCGTTGAAGGAGC+AGG - chr7_2:79776931-79776950 None:intergenic 55.0%
TTGACAGGAGGGGGAGAAGT+TGG - chr7_2:79776946-79776965 None:intergenic 55.0%
TCCGCCTCTTAAAAGCCCCA+TGG + chr7_2:79776984-79777003 Msa1080330:CDS 55.0%
!! GCCATGGGGCTTTTAAGAGG+CGG - chr7_2:79776988-79777007 None:intergenic 55.0%
! CCTGCCATGGGGCTTTTAAG+AGG - chr7_2:79776991-79777010 None:intergenic 55.0%
CCTCTTAAAAGCCCCATGGC+AGG + chr7_2:79776988-79777007 Msa1080330:CDS 55.0%
GGTAGAATGTCCCTGCCATG+GGG - chr7_2:79777002-79777021 None:intergenic 55.0%
CGGTAGAATGTCCCTGCCAT+GGG - chr7_2:79777003-79777022 None:intergenic 55.0%
TCGGTAGAATGTCCCTGCCA+TGG - chr7_2:79777004-79777023 None:intergenic 55.0%
TTCTACCGAAGTCCTGCACC+GGG + chr7_2:79777015-79777034 Msa1080330:CDS 55.0%
GGGTGAACCTCCGTTTGTGA+AGG + chr7_2:79777035-79777054 Msa1080330:CDS 55.0%
AAACATGGCGTTGCGGCCTA+TGG + chr7_2:79777938-79777957 Msa1080330:intron 55.0%
!! TCTGCCGTGGCGTTTTAGCA+TGG - chr7_2:79778021-79778040 None:intergenic 55.0%
TTCTGCGGCATCTTCGGTTG+AGG - chr7_2:79778637-79778656 None:intergenic 55.0%
! GGCATCAGAGCCTACCGATT+CGG + chr7_2:79779252-79779271 Msa1080330:intron 55.0%
!! GCATCAGAGCCTACCGATTC+GGG + chr7_2:79779253-79779272 Msa1080330:intron 55.0%
AAACGATGGGTGGCCCGAAT+CGG - chr7_2:79779269-79779288 None:intergenic 55.0%
CCTCTCATGCCCAGCACTAT+TGG - chr7_2:79779309-79779328 None:intergenic 55.0%
! CCAATAGTGCTGGGCATGAG+AGG + chr7_2:79779306-79779325 Msa1080330:intron 55.0%
! CTGGGCATGAGAGGGTGTAT+TGG + chr7_2:79779315-79779334 Msa1080330:intron 55.0%
! TCAACTGAAGGTGCGGTCGG+TGG - chr7_2:79776166-79776185 None:intergenic 60.0%
! GGGGGAGAAGTTGGCGTTGA+AGG - chr7_2:79776937-79776956 None:intergenic 60.0%
GTTCACCCGGTGCAGGACTT+CGG - chr7_2:79777023-79777042 None:intergenic 60.0%
!! GCCGTGGCGTTTTAGCATGG+TGG - chr7_2:79778018-79778037 None:intergenic 60.0%
TGCGGCATCTTCGGTTGAGG+TGG - chr7_2:79778634-79778653 None:intergenic 60.0%
GACCCCGTCTCCTCAGTAGT+TGG + chr7_2:79778991-79779010 Msa1080330:intron 60.0%
ACAGGTGGCGCCGTTTGCGA+AGG - chr7_2:79776883-79776902 None:intergenic 65.0%
AACGGAGGTTCACCCGGTGC+AGG - chr7_2:79777030-79777049 None:intergenic 65.0%
GATGGGTGGCCCGAATCGGT+AGG - chr7_2:79779265-79779284 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79775025 79780900 79775025 ID=Msa1080330;Name=Msa1080330
chr7_2 mRNA 79775025 79780900 79775025 ID=Msa1080330-mRNA-1;Parent=Msa1080330;Name=Msa1080330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=101|1|1|1|1|1|7|366|277
chr7_2 exon 79775025 79775287 79775025 ID=Msa1080330-mRNA-1:exon:20066;Parent=Msa1080330-mRNA-1
chr7_2 exon 79775372 79775428 79775372 ID=Msa1080330-mRNA-1:exon:20067;Parent=Msa1080330-mRNA-1
chr7_2 exon 79776106 79776257 79776106 ID=Msa1080330-mRNA-1:exon:20068;Parent=Msa1080330-mRNA-1
chr7_2 exon 79776753 79777056 79776753 ID=Msa1080330-mRNA-1:exon:20069;Parent=Msa1080330-mRNA-1
chr7_2 exon 79777134 79777205 79777134 ID=Msa1080330-mRNA-1:exon:20070;Parent=Msa1080330-mRNA-1
chr7_2 exon 79780357 79780422 79780357 ID=Msa1080330-mRNA-1:exon:20071;Parent=Msa1080330-mRNA-1
chr7_2 exon 79780514 79780900 79780514 ID=Msa1080330-mRNA-1:exon:20072;Parent=Msa1080330-mRNA-1
chr7_2 five_prime_UTR 79775025 79775125 79775025 ID=Msa1080330-mRNA-1:five_prime_utr;Parent=Msa1080330-mRNA-1
chr7_2 CDS 79775126 79775287 79775126 ID=Msa1080330-mRNA-1:cds;Parent=Msa1080330-mRNA-1
chr7_2 CDS 79775372 79775428 79775372 ID=Msa1080330-mRNA-1:cds;Parent=Msa1080330-mRNA-1
chr7_2 CDS 79776106 79776257 79776106 ID=Msa1080330-mRNA-1:cds;Parent=Msa1080330-mRNA-1
chr7_2 CDS 79776753 79777056 79776753 ID=Msa1080330-mRNA-1:cds;Parent=Msa1080330-mRNA-1
chr7_2 CDS 79777134 79777205 79777134 ID=Msa1080330-mRNA-1:cds;Parent=Msa1080330-mRNA-1
chr7_2 CDS 79780357 79780422 79780357 ID=Msa1080330-mRNA-1:cds;Parent=Msa1080330-mRNA-1
chr7_2 CDS 79780514 79780534 79780514 ID=Msa1080330-mRNA-1:cds;Parent=Msa1080330-mRNA-1
chr7_2 three_prime_UTR 79780535 79780900 79780535 ID=Msa1080330-mRNA-1:three_prime_utr;Parent=Msa1080330-mRNA-1
Gene Sequence

>Msa1080330

ATGGCTTCCTCCTTGTCCTCCACTTCACCTTCTGCTGCTCCTACTGTTACTGTTGCAGCTTCAGCTTCAGCTTCCACCAAATCTGCACGCTTTTCTCATTCCTCCATCACTTTCCCTCGTCTCTCTCCTAATTCCAACAACTCTCTCCGCTTTTTCACCAAGGGATGCCCACCTAATCATATGCTATTATGCCCCAGGGTTAAGGCCCAGTTAAATGAGGTTGCCCTTGATGGTTCTTCCAATGATGTGCCTCCTAAAGCCAAATCAGATGTTGAACCACCGACCGCACCTTCAGTTGAACCATCTTCTTCAGGCTTGGCAGATCAAGAATCAATCTCTGAACTTTTTGATCAAATTGCAAGTCTTGTCAAGCTTGTTGATTCAAGAGACATTGTAGAATTGAAGCTGAAGCAGCTAAACTGTGAAGTACTAATCAGGAAGAAAGAGGCTATGCCTCAACCAGAATATGCTCCTCAACCTGCATTGTTGTATTCACAACCTTCGCAAACGGCGCCACCTGTTGCGCCATCACATACTCTGGCTCTTCCTGCTCCTTCAACGCCAACTTCTCCCCCTCCTGTCAAGCTACCTAAATCATCACGTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCGGGTGAACCTCCGTTTGTGAAGGTGGGAGACGAAGTAAAGAAGGGGCAAGTCGTGTGCATCATTGAAGCAATGAAATTGATGAATGAAATTGAAGCTGATAAGTCAGGGACTATAGTTGAAATAATCGCGGAAGATGCTAAGCCTGTAAGCGTTGATACTCCCTTATTTGTGATTGAATAG

Protein sequence

>Msa1080330

MASSLSSTSPSAAPTVTVAASASASTKSARFSHSSITFPRLSPNSNNSLRFFTKGCPPNHMLLCPRVKAQLNEVALDGSSNDVPPKAKSDVEPPTAPSVEPSSSGLADQESISELFDQIASLVKLVDSRDIVELKLKQLNCEVLIRKKEAMPQPEYAPQPALLYSQPSQTAPPVAPSHTLALPAPSTPTSPPPVKLPKSSRPPLKSPMAGTFYRSPAPGEPPFVKVGDEVKKGQVVCIIEAMKLMNEIEADKSGTIVEIIAEDAKPVSVDTPLFVIE*