Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760990 | sp|Q9CQZ7|RPC10_MOUSE | 39.823 | 113 | 60 | 2 | 102 | 214 | 4 | 108 | 1.88e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760990 | A0A072UDK1 | 96.581 | 117 | 4 | 0 | 98 | 214 | 12 | 128 | 5.40e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032470 | Msa0760990 | -0.811695 | 6.156518e-51 | -8.615850e-47 |
| Msa0618970 | Msa0760990 | -0.803234 | 3.842574e-49 | -8.615850e-47 |
| Msa0653320 | Msa0760990 | 0.800564 | 1.358638e-48 | -8.615850e-47 |
| Msa0703440 | Msa0760990 | -0.820783 | 5.714944e-53 | -8.615850e-47 |
| Msa0726080 | Msa0760990 | -0.821506 | 3.894208e-53 | -8.615850e-47 |
| Msa0760990 | Msa0841620 | 0.906717 | 1.100750e-80 | -8.615850e-47 |
| Msa0760990 | Msa0846230 | -0.829859 | 4.066814e-55 | -8.615850e-47 |
| Msa0760990 | Msa0867070 | 0.804627 | 1.972985e-49 | -8.615850e-47 |
| Msa0760990 | Msa1028760 | 0.819749 | 9.862613e-53 | -8.615850e-47 |
| Msa0760990 | Msa1067890 | 0.811081 | 8.365842e-51 | -8.615850e-47 |
| Msa0760990 | Msa1080330 | 0.831735 | 1.410178e-55 | -8.615850e-47 |
| Msa0760990 | Msa1084270 | -0.809131 | 2.202336e-50 | -8.615850e-47 |
| Msa0760990 | Msa1128330 | -0.806750 | 7.067853e-50 | -8.615850e-47 |
| Msa0760990 | Msa1156150 | 0.832632 | 8.461744e-56 | -8.615850e-47 |
| Msa0760990 | Msa1188600 | 0.806182 | 9.312960e-50 | -8.615850e-47 |
| Msa0760990 | Msa1207350 | -0.801656 | 8.122215e-49 | -8.615850e-47 |
| Msa0760990 | Msa1315750 | -0.819157 | 1.345779e-52 | -8.615850e-47 |
| Msa0760990 | Msa1316440 | -0.833556 | 4.982080e-56 | -8.615850e-47 |
| Msa0760990 | Msa1371240 | -0.807950 | 3.933933e-50 | -8.615850e-47 |
| Msa0760990 | Msa1395600 | 0.812637 | 3.835613e-51 | -8.615850e-47 |
| Msa0760990 | Msa1411520 | 0.809794 | 1.586388e-50 | -8.615850e-47 |
| Msa0760990 | Msa1442790 | -0.829539 | 4.865256e-55 | -8.615850e-47 |
| Msa0124550 | Msa0760990 | -0.809032 | 2.311657e-50 | -8.615850e-47 |
| Msa0137480 | Msa0760990 | -0.812545 | 4.017366e-51 | -8.615850e-47 |
| Msa0175540 | Msa0760990 | -0.802180 | 6.340434e-49 | -8.615850e-47 |
| Msa0186950 | Msa0760990 | -0.801486 | 8.803761e-49 | -8.615850e-47 |
| Msa0284450 | Msa0760990 | -0.802093 | 6.607642e-49 | -8.615850e-47 |
| Msa0285330 | Msa0760990 | -0.814837 | 1.256954e-51 | -8.615850e-47 |
| Msa0548930 | Msa0760990 | -0.804323 | 2.282468e-49 | -8.615850e-47 |
| Msa0557950 | Msa0760990 | 0.805287 | 1.435982e-49 | -8.615850e-47 |
| Msa0566350 | Msa0760990 | -0.818953 | 1.497562e-52 | -8.615850e-47 |
| Msa0566750 | Msa0760990 | -0.809717 | 1.647894e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760990 | MtrunA17_Chr5g0411181 | 97.273 | 110 | 3 | 0 | 105 | 214 | 1 | 110 | 1.91e-78 | 230 |
| Msa0760990 | MtrunA17_Chr7g0275211 | 86.486 | 111 | 14 | 1 | 105 | 214 | 1 | 111 | 1.02e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760990 | AT4G07950.1 | 44.348 | 115 | 54 | 3 | 100 | 214 | 1 | 105 | 3.37e-29 | 105 |
| Msa0760990 | AT1G01210.2 | 41.739 | 115 | 57 | 3 | 100 | 214 | 1 | 105 | 3.82e-27 | 100 |
| Msa0760990 | AT1G01210.1 | 41.739 | 115 | 57 | 3 | 100 | 214 | 1 | 105 | 3.82e-27 | 100 |
| Msa0760990 | AT1G01210.3 | 41.739 | 115 | 57 | 3 | 100 | 214 | 1 | 105 | 3.82e-27 | 100 |
Find 49 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCCCTCTGCAACAAATT+AGG | 0.164284 | 5_2:-17942574 | Msa0760990:CDS |
| GCTTGAGGATGGCGACAATT+TGG | 0.237510 | 5_2:+17940382 | None:intergenic |
| TTCTCGATTGAGCAAATATA+TGG | 0.241781 | 5_2:+17941591 | None:intergenic |
| ATCTCATGATGGGAGATAAT+AGG | 0.295531 | 5_2:+17941420 | None:intergenic |
| TTTCCCTCTGCAACAAATTA+GGG | 0.296709 | 5_2:-17942573 | Msa0760990:CDS |
| CATTGCTCATTCCATTTCTC+AGG | 0.315524 | 5_2:-17942512 | Msa0760990:intron |
| AAGATTCTGCGTTCTATGTT+TGG | 0.315944 | 5_2:+17942661 | None:intergenic |
| CTTGAGGATGGCGACAATTT+GGG | 0.324696 | 5_2:+17940383 | None:intergenic |
| AAATTTGTCGTGACTCGAAT+TGG | 0.331864 | 5_2:+17941644 | None:intergenic |
| AGATTCTGCGTTCTATGTTT+GGG | 0.352114 | 5_2:+17942662 | None:intergenic |
| AGGGTTTCAAATCGTGGTTT+TGG | 0.364585 | 5_2:-17942623 | Msa0760990:CDS |
| CAATCGTAAAATATTGTTGC+AGG | 0.365882 | 5_2:+17940322 | None:intergenic |
| GTAACTAAAGTTGAAGGATA+TGG | 0.389045 | 5_2:+17942712 | None:intergenic |
| TCTCGCCACCACCCGGAGAT+TGG | 0.407544 | 5_2:-17942766 | Msa0760990:CDS |
| AGAGAAGACAAATGCTGGTT+AGG | 0.408988 | 5_2:-17941455 | Msa0760990:CDS |
| AAAGTAGTACCGTCGGCTTT+TGG | 0.414427 | 5_2:+17941384 | None:intergenic |
| GAAGATGTAACTAAAGTTGA+AGG | 0.417425 | 5_2:+17942706 | None:intergenic |
| AGGATTATTGACCTGAGAAA+TGG | 0.420415 | 5_2:+17942501 | None:intergenic |
| TCTCATGATGGGAGATAATA+GGG | 0.429313 | 5_2:+17941421 | None:intergenic |
| TATTCTTGTTGATCTCATGA+TGG | 0.460772 | 5_2:+17941409 | None:intergenic |
| CATCTCACTCCTTCCACTTG+TGG | 0.461178 | 5_2:+17940281 | None:intergenic |
| AATTTGTCGTGACTCGAATT+GGG | 0.488382 | 5_2:+17941645 | None:intergenic |
| ATCAGCATGCTCCCGCACAT+AGG | 0.496816 | 5_2:+17941678 | None:intergenic |
| GACAAATGCTGGTTAGGAAA+GGG | 0.497928 | 5_2:-17941449 | Msa0760990:CDS |
| ATTCTTGTTGATCTCATGAT+GGG | 0.514246 | 5_2:+17941410 | None:intergenic |
| GATTAAGAGAAGACAAATGC+TGG | 0.517033 | 5_2:-17941460 | Msa0760990:CDS |
| TCTCTCTTCTCGCCACCACC+CGG | 0.519664 | 5_2:-17942773 | Msa0760990:CDS |
| TATTTGCTCAATCGAGAAAG+AGG | 0.528655 | 5_2:-17941586 | Msa0760990:intron |
| GTGAGGCAATAAAACCTTGT+GGG | 0.529652 | 5_2:+17941618 | None:intergenic |
| TCAGCATGCTCCCGCACATA+GGG | 0.540563 | 5_2:+17941679 | None:intergenic |
| AAGCCCTAATTTGTTGCAGA+GGG | 0.558540 | 5_2:+17942570 | None:intergenic |
| CTAGACCAATCTCCGGGTGG+TGG | 0.558546 | 5_2:+17942761 | None:intergenic |
| AGACAAATGCTGGTTAGGAA+AGG | 0.564511 | 5_2:-17941450 | Msa0760990:CDS |
| GAAGCCCTAATTTGTTGCAG+AGG | 0.578123 | 5_2:+17942569 | None:intergenic |
| ATGAAAAGTGTGGCCACAAG+TGG | 0.599470 | 5_2:-17940294 | Msa0760990:CDS |
| GGATGGCGACAATTTGGGCA+TGG | 0.605399 | 5_2:+17940388 | None:intergenic |
| AAATGGAATGAGCAATGAGA+GGG | 0.615146 | 5_2:+17942518 | None:intergenic |
| AGCAAATATATGGACAAGTG+AGG | 0.632197 | 5_2:+17941601 | None:intergenic |
| GGGTGGTGGCGAGAAGAGAG+AGG | 0.632398 | 5_2:+17942775 | None:intergenic |
| AAAGTGTGGCCACAAGTGGA+AGG | 0.641576 | 5_2:-17940290 | Msa0760990:CDS |
| ACGACAAATTTCATCCCACA+AGG | 0.644788 | 5_2:-17941632 | Msa0760990:CDS |
| TAGTTCTCCAAATGAAACTG+TGG | 0.645675 | 5_2:-17942798 | None:intergenic |
| GAAATGGAATGAGCAATGAG+AGG | 0.649485 | 5_2:+17942517 | None:intergenic |
| AAGAATAAACCAAAAGCCGA+CGG | 0.660260 | 5_2:-17941393 | Msa0760990:intron |
| AGTGAGGCAATAAAACCTTG+TGG | 0.661965 | 5_2:+17941617 | None:intergenic |
| TGTGATAACTAGCTTGAGGA+TGG | 0.663098 | 5_2:+17940371 | None:intergenic |
| TGCATGTGATAACTAGCTTG+AGG | 0.701040 | 5_2:+17940367 | None:intergenic |
| GATTGCTTGAATGAAAAGTG+TGG | 0.722746 | 5_2:-17940304 | Msa0760990:CDS |
| AAACTAGACCAATCTCCGGG+TGG | 0.747692 | 5_2:+17942758 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAATGAAATATAACTAT+AGG | + | chr5_2:17940895-17940914 | None:intergenic | 15.0% |
| !! | TGTGAAATAATTATATCAAT+TGG | - | chr5_2:17941787-17941806 | Msa0760990:intron | 15.0% |
| !! | TTAAACCTTCAAAATATAAT+GGG | + | chr5_2:17942026-17942045 | None:intergenic | 15.0% |
| !! | TTTAAACCTTCAAAATATAA+TGG | + | chr5_2:17942027-17942046 | None:intergenic | 15.0% |
| !! | TTCAAAAAAAAAAAGAAACA+AGG | + | chr5_2:17942534-17942553 | None:intergenic | 15.0% |
| !!! | TGTTTCTTTTTTTTTTTGAA+AGG | - | chr5_2:17942534-17942553 | Msa0760990:CDS | 15.0% |
| !! | AAAAATGGAAATAATGATAA+AGG | + | chr5_2:17942585-17942604 | None:intergenic | 15.0% |
| !! | ATCTTCGTAACAAAAAAAAT+AGG | - | chr5_2:17940398-17940417 | Msa0760990:intron | 20.0% |
| !! | TCTTCGTAACAAAAAAAATA+GGG | - | chr5_2:17940399-17940418 | Msa0760990:intron | 20.0% |
| !!! | TTTTTTACCTATTGATCAAT+TGG | - | chr5_2:17940677-17940696 | Msa0760990:intron | 20.0% |
| !!! | TTTTTACCTATTGATCAATT+GGG | - | chr5_2:17940678-17940697 | Msa0760990:intron | 20.0% |
| !! | AATACTACAAAAGCAATATA+AGG | + | chr5_2:17941027-17941046 | None:intergenic | 20.0% |
| !! | TGTAATAAAATATTAGACCT+GGG | + | chr5_2:17941079-17941098 | None:intergenic | 20.0% |
| !! | ATGTAATAAAATATTAGACC+TGG | + | chr5_2:17941080-17941099 | None:intergenic | 20.0% |
| !! | TTGATTGAACCATATTAAAT+AGG | + | chr5_2:17941223-17941242 | None:intergenic | 20.0% |
| !! | CTAAACAACTAGTAAATAAT+AGG | + | chr5_2:17941289-17941308 | None:intergenic | 20.0% |
| !! | AAAAGAAAACATGATGAAAT+GGG | + | chr5_2:17941547-17941566 | None:intergenic | 20.0% |
| !! | TAAAAGAAAACATGATGAAA+TGG | + | chr5_2:17941548-17941567 | None:intergenic | 20.0% |
| !! | ATAAACCAATAAAATCAGTT+CGG | + | chr5_2:17941813-17941832 | None:intergenic | 20.0% |
| !!! | AACTGATTTTATTGGTTTAT+TGG | - | chr5_2:17941813-17941832 | Msa0760990:intron | 20.0% |
| !!! | ATATATGTTAAAAGTATTGC+TGG | + | chr5_2:17942083-17942102 | None:intergenic | 20.0% |
| !! | TAAACTTAAAAGTTCCTATT+AGG | + | chr5_2:17942279-17942298 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTTACATGATTTA+CGG | - | chr5_2:17942349-17942368 | Msa0760990:intron | 20.0% |
| !! | TTGTGAATTAACATTGTTTA+TGG | - | chr5_2:17942461-17942480 | Msa0760990:intron | 20.0% |
| !! | AGAAAAGGAAGATATAAAAA+TGG | + | chr5_2:17942600-17942619 | None:intergenic | 20.0% |
| !!! | TTCCTTTGATTTGATTTGAT+TGG | - | chr5_2:17940599-17940618 | Msa0760990:intron | 25.0% |
| ! | CCAAACTCAAAAATAGAAAA+TGG | + | chr5_2:17940775-17940794 | None:intergenic | 25.0% |
| !!! | CCATTTTCTATTTTTGAGTT+TGG | - | chr5_2:17940772-17940791 | Msa0760990:intron | 25.0% |
| ! | ATATAACTATAGGTTTGATG+AGG | + | chr5_2:17940885-17940904 | None:intergenic | 25.0% |
| !!! | GCTTTTGTAGTATTTTTAGT+TGG | - | chr5_2:17941033-17941052 | Msa0760990:intron | 25.0% |
| !! | TCTCTATAAATATTTTGCCT+TGG | + | chr5_2:17941178-17941197 | None:intergenic | 25.0% |
| ! | CCATATTAAATAGGATGAAT+TGG | + | chr5_2:17941214-17941233 | None:intergenic | 25.0% |
| ! | CCAATTCATCCTATTTAATA+TGG | - | chr5_2:17941211-17941230 | Msa0760990:intron | 25.0% |
| !! | CATGTTTTCTTTTACTTTAC+AGG | - | chr5_2:17941554-17941573 | Msa0760990:intron | 25.0% |
| ! | ATTTGATTATCCAAGTAAAC+AGG | + | chr5_2:17941740-17941759 | None:intergenic | 25.0% |
| ! | TTTAGTCAATAAGATAAGAG+GGG | + | chr5_2:17941901-17941920 | None:intergenic | 25.0% |
| ! | CTTTAGTCAATAAGATAAGA+GGG | + | chr5_2:17941902-17941921 | None:intergenic | 25.0% |
| ! | TCTTTAGTCAATAAGATAAG+AGG | + | chr5_2:17941903-17941922 | None:intergenic | 25.0% |
| ! | AAGGAAATAACAAAGAAACA+AGG | + | chr5_2:17942566-17942585 | None:intergenic | 25.0% |
| GTAACTAAAGTTGAAGGATA+TGG | + | chr5_2:17940332-17940351 | None:intergenic | 30.0% | |
| GAAGATGTAACTAAAGTTGA+AGG | + | chr5_2:17940338-17940357 | None:intergenic | 30.0% | |
| AAAAATAGGGTTTCAAATCG+TGG | - | chr5_2:17940412-17940431 | Msa0760990:intron | 30.0% | |
| TAAGAGAGTGAAATTGAGAA+AGG | + | chr5_2:17940563-17940582 | None:intergenic | 30.0% | |
| ! | CAAAGGAAAAGAGAGATTTT+TGG | + | chr5_2:17940587-17940606 | None:intergenic | 30.0% |
| AGCCAATCAAATCAAATCAA+AGG | + | chr5_2:17940604-17940623 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTGGATCATCTGA+TGG | - | chr5_2:17941045-17941064 | Msa0760990:intron | 30.0% |
| AATAATTCAGTGCCTTTAGT+TGG | - | chr5_2:17941241-17941260 | Msa0760990:intron | 30.0% | |
| TTCTCGATTGAGCAAATATA+TGG | + | chr5_2:17941453-17941472 | None:intergenic | 30.0% | |
| ATTCTTGTTGATCTCATGAT+GGG | + | chr5_2:17941634-17941653 | None:intergenic | 30.0% | |
| TATTCTTGTTGATCTCATGA+TGG | + | chr5_2:17941635-17941654 | None:intergenic | 30.0% | |
| TAAAAGAAAAGTAGTACCGT+CGG | + | chr5_2:17941667-17941686 | None:intergenic | 30.0% | |
| !! | TTTATTGGTTTATTGGTCGT+TGG | - | chr5_2:17941820-17941839 | Msa0760990:intron | 30.0% |
| !!! | TACGATCTGTTTTTAGTGAT+TGG | - | chr5_2:17941849-17941868 | Msa0760990:intron | 30.0% |
| !!! | ACGATCTGTTTTTAGTGATT+GGG | - | chr5_2:17941850-17941869 | Msa0760990:intron | 30.0% |
| !! | GGCTCTGAAGATAAATATTT+GGG | - | chr5_2:17941871-17941890 | Msa0760990:intron | 30.0% |
| !! | GCTCTGAAGATAAATATTTG+GGG | - | chr5_2:17941872-17941891 | Msa0760990:intron | 30.0% |
| TTGAATGTGATCTAATGCAA+AGG | - | chr5_2:17941935-17941954 | Msa0760990:intron | 30.0% | |
| TGAATGTGATCTAATGCAAA+GGG | - | chr5_2:17941936-17941955 | Msa0760990:intron | 30.0% | |
| ATCTAATGCAAAGGGATAAA+TGG | - | chr5_2:17941944-17941963 | Msa0760990:intron | 30.0% | |
| TCTAATGCAAAGGGATAAAT+GGG | - | chr5_2:17941945-17941964 | Msa0760990:intron | 30.0% | |
| !!! | TATTTTTTCTAGCACTGTTG+AGG | - | chr5_2:17941997-17942016 | Msa0760990:intron | 30.0% |
| CACACAAGTTTGATATGTAT+TGG | + | chr5_2:17942139-17942158 | None:intergenic | 30.0% | |
| CATATCAAACTTGTGTGATT+TGG | - | chr5_2:17942142-17942161 | Msa0760990:intron | 30.0% | |
| !!! | ACTTGTGTGATTTGGTTTTA+AGG | - | chr5_2:17942150-17942169 | Msa0760990:intron | 30.0% |
| TTGGATTATCAACTCCTAAT+AGG | - | chr5_2:17942262-17942281 | Msa0760990:intron | 30.0% | |
| AACAAGACAAACTTAGTACA+AGG | + | chr5_2:17942306-17942325 | None:intergenic | 30.0% | |
| TCGCGAATTAACATTGTTTA+TGG | - | chr5_2:17942386-17942405 | Msa0760990:intron | 30.0% | |
| CAATCGTAAAATATTGTTGC+AGG | + | chr5_2:17942722-17942741 | None:intergenic | 30.0% | |
| TAAAAACTAGACCAATCTCC+GGG | + | chr5_2:17940289-17940308 | None:intergenic | 35.0% | |
| GTAAAAACTAGACCAATCTC+CGG | + | chr5_2:17940290-17940309 | None:intergenic | 35.0% | |
| AGATTCTGCGTTCTATGTTT+GGG | + | chr5_2:17940382-17940401 | None:intergenic | 35.0% | |
| AAGATTCTGCGTTCTATGTT+TGG | + | chr5_2:17940383-17940402 | None:intergenic | 35.0% | |
| ATTTCCCTCTGCAACAAATT+AGG | - | chr5_2:17940467-17940486 | Msa0760990:intron | 35.0% | |
| TTTCCCTCTGCAACAAATTA+GGG | - | chr5_2:17940468-17940487 | Msa0760990:intron | 35.0% | |
| AAATGGAATGAGCAATGAGA+GGG | + | chr5_2:17940526-17940545 | None:intergenic | 35.0% | |
| AGGATTATTGACCTGAGAAA+TGG | + | chr5_2:17940543-17940562 | None:intergenic | 35.0% | |
| ATCTGACCCAATTGATCAAT+AGG | + | chr5_2:17940687-17940706 | None:intergenic | 35.0% | |
| TTGATCAATTGGGTCAGATT+TGG | - | chr5_2:17940688-17940707 | Msa0760990:intron | 35.0% | |
| TGGAACAAGCAATAAGAGAT+AGG | + | chr5_2:17940755-17940774 | None:intergenic | 35.0% | |
| AAATCACTCTTTGCAGAATG+TGG | - | chr5_2:17940814-17940833 | Msa0760990:intron | 35.0% | |
| GCATTAAGATAAAGAAGGTG+TGG | + | chr5_2:17940987-17941006 | None:intergenic | 35.0% | |
| AGTGGGCATTAAGATAAAGA+AGG | + | chr5_2:17940992-17941011 | None:intergenic | 35.0% | |
| GGTAATACTAACCTATCCTA+GGG | + | chr5_2:17941157-17941176 | None:intergenic | 35.0% | |
| TGGTAATACTAACCTATCCT+AGG | + | chr5_2:17941158-17941177 | None:intergenic | 35.0% | |
| AGGATAGGTTAGTATTACCA+AGG | - | chr5_2:17941158-17941177 | Msa0760990:intron | 35.0% | |
| CGTTAATTGTGTTGTGAAGA+TGG | - | chr5_2:17941332-17941351 | Msa0760990:intron | 35.0% | |
| AATTTGTCGTGACTCGAATT+GGG | + | chr5_2:17941399-17941418 | None:intergenic | 35.0% | |
| AAATTTGTCGTGACTCGAAT+TGG | + | chr5_2:17941400-17941419 | None:intergenic | 35.0% | |
| AGCAAATATATGGACAAGTG+AGG | + | chr5_2:17941443-17941462 | None:intergenic | 35.0% | |
| TATTTGCTCAATCGAGAAAG+AGG | - | chr5_2:17941455-17941474 | Msa0760990:CDS | 35.0% | |
| !! | CAACTGGTTGGTAATAGAAA+TGG | + | chr5_2:17941512-17941531 | None:intergenic | 35.0% |
| !! | GATGAAATGGGTTGAATTGA+AGG | + | chr5_2:17941535-17941554 | None:intergenic | 35.0% |
| GATTAAGAGAAGACAAATGC+TGG | - | chr5_2:17941581-17941600 | Msa0760990:intron | 35.0% | |
| ! | TCTCATGATGGGAGATAATA+GGG | + | chr5_2:17941623-17941642 | None:intergenic | 35.0% |
| ! | ATCTCATGATGGGAGATAAT+AGG | + | chr5_2:17941624-17941643 | None:intergenic | 35.0% |
| AAGAATAAACCAAAAGCCGA+CGG | - | chr5_2:17941648-17941667 | Msa0760990:CDS | 35.0% | |
| ! | CATTCTTCTTTAGCTCATTG+TGG | - | chr5_2:17941713-17941732 | Msa0760990:intron | 35.0% |
| !! | ATTGGCCGAACTGATTTTAT+TGG | - | chr5_2:17941805-17941824 | Msa0760990:intron | 35.0% |
| !! | GGGCTCTGAAGATAAATATT+TGG | - | chr5_2:17941870-17941889 | Msa0760990:intron | 35.0% |
| ATCACATTCAACTCAAGAGA+AGG | + | chr5_2:17941926-17941945 | None:intergenic | 35.0% | |
| CTAATGCAAAGGGATAAATG+GGG | - | chr5_2:17941946-17941965 | Msa0760990:intron | 35.0% | |
| !! | GGTCACCCATTATATTTTGA+AGG | - | chr5_2:17942018-17942037 | Msa0760990:intron | 35.0% |
| !! | AAGTATTGCTGGCTTAGATT+TGG | + | chr5_2:17942072-17942091 | None:intergenic | 35.0% |
| ! | CAAGTTTGATATGTATTGGC+AGG | + | chr5_2:17942135-17942154 | None:intergenic | 35.0% |
| !!! | GTGTGATTTGGTTTTAAGGA+TGG | - | chr5_2:17942154-17942173 | Msa0760990:intron | 35.0% |
| !! | ATTTACGAGCTTTAAGAAGC+AGG | - | chr5_2:17942190-17942209 | Msa0760990:intron | 35.0% |
| !! | TTTACGAGCTTTAAGAAGCA+GGG | - | chr5_2:17942191-17942210 | Msa0760990:intron | 35.0% |
| TGAGTTTGCATGTTTCAGTT+TGG | - | chr5_2:17942243-17942262 | Msa0760990:intron | 35.0% | |
| GATTGCTTGAATGAAAAGTG+TGG | - | chr5_2:17942737-17942756 | Msa0760990:CDS | 35.0% | |
| ! | AGGGTTTCAAATCGTGGTTT+TGG | - | chr5_2:17940418-17940437 | Msa0760990:intron | 40.0% |
| !! | AAGCCCTAATTTGTTGCAGA+GGG | + | chr5_2:17940474-17940493 | None:intergenic | 40.0% |
| GAAATGGAATGAGCAATGAG+AGG | + | chr5_2:17940527-17940546 | None:intergenic | 40.0% | |
| CATTGCTCATTCCATTTCTC+AGG | - | chr5_2:17940529-17940548 | Msa0760990:intron | 40.0% | |
| TAATGCCCACTTGTGTAGAT+TGG | - | chr5_2:17941001-17941020 | Msa0760990:intron | 40.0% | |
| TAAGGCCAATCTACACAAGT+GGG | + | chr5_2:17941009-17941028 | None:intergenic | 40.0% | |
| ATAAGGCCAATCTACACAAG+TGG | + | chr5_2:17941010-17941029 | None:intergenic | 40.0% | |
| GATGAATTGGTCGCATTACT+CGG | + | chr5_2:17941201-17941220 | None:intergenic | 40.0% | |
| CGATTCAGAACACCAACTAA+AGG | + | chr5_2:17941256-17941275 | None:intergenic | 40.0% | |
| ACGACAAATTTCATCCCACA+AGG | - | chr5_2:17941409-17941428 | Msa0760990:CDS | 40.0% | |
| GTGAGGCAATAAAACCTTGT+GGG | + | chr5_2:17941426-17941445 | None:intergenic | 40.0% | |
| AGTGAGGCAATAAAACCTTG+TGG | + | chr5_2:17941427-17941446 | None:intergenic | 40.0% | |
| TTGAATTGAAGGCAACTGGT+TGG | + | chr5_2:17941524-17941543 | None:intergenic | 40.0% | |
| ! | AGAGAAGACAAATGCTGGTT+AGG | - | chr5_2:17941586-17941605 | Msa0760990:intron | 40.0% |
| ! | AGACAAATGCTGGTTAGGAA+AGG | - | chr5_2:17941591-17941610 | Msa0760990:CDS | 40.0% |
| ! | GACAAATGCTGGTTAGGAAA+GGG | - | chr5_2:17941592-17941611 | Msa0760990:CDS | 40.0% |
| TCATTGTGGACCTGTTTACT+TGG | - | chr5_2:17941727-17941746 | Msa0760990:intron | 40.0% | |
| GATTCAACCACTGTTTGTCT+TGG | - | chr5_2:17942424-17942443 | Msa0760990:intron | 40.0% | |
| GAAGAGGAATGAGTGAGAAA+AGG | + | chr5_2:17942615-17942634 | None:intergenic | 40.0% | |
| CTAGGAGGGAAAAAAAGAAG+AGG | + | chr5_2:17942631-17942650 | None:intergenic | 40.0% | |
| ! | TGTGATAACTAGCTTGAGGA+TGG | + | chr5_2:17942673-17942692 | None:intergenic | 40.0% |
| ! | TGCATGTGATAACTAGCTTG+AGG | + | chr5_2:17942677-17942696 | None:intergenic | 40.0% |
| !! | GAAGCCCTAATTTGTTGCAG+AGG | + | chr5_2:17940475-17940494 | None:intergenic | 45.0% |
| TAGTTGGATCATCTGATGGC+TGG | - | chr5_2:17941049-17941068 | Msa0760990:intron | 45.0% | |
| ! | ATGGAGTTTTGCCCTATGTG+CGG | - | chr5_2:17941351-17941370 | Msa0760990:intron | 45.0% |
| ! | TGGGTTGAATTGAAGGCAAC+TGG | + | chr5_2:17941528-17941547 | None:intergenic | 45.0% |
| !!! | AAAGTAGTACCGTCGGCTTT+TGG | + | chr5_2:17941660-17941679 | None:intergenic | 45.0% |
| ! | TGGGGCTTTAGTTTAGTGCA+AGG | - | chr5_2:17941964-17941983 | Msa0760990:intron | 45.0% |
| GCTCAAACCAAGACAAACAG+TGG | + | chr5_2:17942434-17942453 | None:intergenic | 45.0% | |
| ATTTGGGCATGGTACTAGGA+GGG | + | chr5_2:17942645-17942664 | None:intergenic | 45.0% | |
| AATTTGGGCATGGTACTAGG+AGG | + | chr5_2:17942646-17942665 | None:intergenic | 45.0% | |
| GACAATTTGGGCATGGTACT+AGG | + | chr5_2:17942649-17942668 | None:intergenic | 45.0% | |
| CTTGAGGATGGCGACAATTT+GGG | + | chr5_2:17942661-17942680 | None:intergenic | 45.0% | |
| ! | ATGAAAAGTGTGGCCACAAG+TGG | - | chr5_2:17942747-17942766 | Msa0760990:CDS | 45.0% |
| !!! | AATATTTTATTACATATATT+AGG | - | chr5_2:17941085-17941104 | Msa0760990:intron | 5.0% |
| !! | TGAAAAAATAAAATAAAAAT+AGG | + | chr5_2:17942494-17942513 | None:intergenic | 5.0% |
| AAACTAGACCAATCTCCGGG+TGG | + | chr5_2:17940286-17940305 | None:intergenic | 50.0% | |
| GCGGAAGGAGAATACAATGG+TGG | + | chr5_2:17941125-17941144 | None:intergenic | 50.0% | |
| GCAGCGGAAGGAGAATACAA+TGG | + | chr5_2:17941128-17941147 | None:intergenic | 50.0% | |
| CTAACCTATCCTAGGGATCG+CGG | + | chr5_2:17941150-17941169 | None:intergenic | 50.0% | |
| ! | TGGAGTTTTGCCCTATGTGC+GGG | - | chr5_2:17941352-17941371 | Msa0760990:intron | 50.0% |
| AAGCAGGGAAGTAGAAGTCG+TGG | - | chr5_2:17942206-17942225 | Msa0760990:intron | 50.0% | |
| GGGAAGTAGAAGTCGTGGTA+TGG | - | chr5_2:17942211-17942230 | Msa0760990:intron | 50.0% | |
| GCTTGAGGATGGCGACAATT+TGG | + | chr5_2:17942662-17942681 | None:intergenic | 50.0% | |
| AAAGTGTGGCCACAAGTGGA+AGG | - | chr5_2:17942751-17942770 | Msa0760990:CDS | 50.0% | |
| CATCTCACTCCTTCCACTTG+TGG | + | chr5_2:17942763-17942782 | None:intergenic | 50.0% | |
| !! | ATCTGATGGCTGGTCTTCCC+AGG | - | chr5_2:17941059-17941078 | Msa0760990:intron | 55.0% |
| TCAGCATGCTCCCGCACATA+GGG | + | chr5_2:17941365-17941384 | None:intergenic | 55.0% | |
| ATCAGCATGCTCCCGCACAT+AGG | + | chr5_2:17941366-17941385 | None:intergenic | 55.0% | |
| GGATGGCGACAATTTGGGCA+TGG | + | chr5_2:17942656-17942675 | None:intergenic | 55.0% | |
| TCTCTCTTCTCGCCACCACC+CGG | - | chr5_2:17940268-17940287 | Msa0760990:exon | 60.0% | |
| CTAGACCAATCTCCGGGTGG+TGG | + | chr5_2:17940283-17940302 | None:intergenic | 60.0% | |
| TATCCTAGGGATCGCGGCAG+CGG | + | chr5_2:17941144-17941163 | None:intergenic | 60.0% | |
| ! | GGGTGGTGGCGAGAAGAGAG+AGG | + | chr5_2:17940269-17940288 | None:intergenic | 65.0% |
| TCTCGCCACCACCCGGAGAT+TGG | - | chr5_2:17940275-17940294 | Msa0760990:exon | 65.0% | |
| GCTGCCGCGATCCCTAGGAT+AGG | - | chr5_2:17941143-17941162 | Msa0760990:intron | 65.0% | |
| CTAGGGATCGCGGCAGCGGA+AGG | + | chr5_2:17941140-17941159 | None:intergenic | 70.0% | |
| CTTCCGCTGCCGCGATCCCT+AGG | - | chr5_2:17941138-17941157 | Msa0760990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 17940254 | 17942809 | 17940254 | ID=Msa0760990;Name=Msa0760990 |
| chr5_2 | mRNA | 17940254 | 17942809 | 17940254 | ID=Msa0760990-mRNA-1;Parent=Msa0760990;Name=Msa0760990-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.66|0.75|1|1|1|4|31|214 |
| chr5_2 | exon | 17940254 | 17940412 | 17940254 | ID=Msa0760990-mRNA-1:exon:7826;Parent=Msa0760990-mRNA-1 |
| chr5_2 | exon | 17941394 | 17941487 | 17941394 | ID=Msa0760990-mRNA-1:exon:7825;Parent=Msa0760990-mRNA-1 |
| chr5_2 | exon | 17941587 | 17941712 | 17941587 | ID=Msa0760990-mRNA-1:exon:7824;Parent=Msa0760990-mRNA-1 |
| chr5_2 | exon | 17942513 | 17942809 | 17942513 | ID=Msa0760990-mRNA-1:exon:7823;Parent=Msa0760990-mRNA-1 |
| chr5_2 | CDS | 17942513 | 17942809 | 17942513 | ID=Msa0760990-mRNA-1:cds;Parent=Msa0760990-mRNA-1 |
| chr5_2 | CDS | 17941587 | 17941712 | 17941587 | ID=Msa0760990-mRNA-1:cds;Parent=Msa0760990-mRNA-1 |
| chr5_2 | CDS | 17941394 | 17941487 | 17941394 | ID=Msa0760990-mRNA-1:cds;Parent=Msa0760990-mRNA-1 |
| chr5_2 | CDS | 17940285 | 17940412 | 17940285 | ID=Msa0760990-mRNA-1:cds;Parent=Msa0760990-mRNA-1 |
| chr5_2 | three_prime_UTR | 17940254 | 17940284 | 17940254 | ID=Msa0760990-mRNA-1:three_prime_utr;Parent=Msa0760990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
