Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844060 | PNY13277.1 | 53.425 | 146 | 51 | 3 | 17 | 162 | 1 | 129 | 2.85e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844060 | A0A2K3PDA3 | 53.425 | 146 | 51 | 3 | 17 | 162 | 1 | 129 | 1.36e-42 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663900 | Msa0844060 | 0.802349 | 5.850835e-49 | -8.615850e-47 |
| Msa0194480 | Msa0844060 | 0.822453 | 2.350216e-53 | -8.615850e-47 |
| Msa0236980 | Msa0844060 | 0.817072 | 3.986063e-52 | -8.615850e-47 |
| Msa0844060 | Msa0974810 | 0.833258 | 5.911906e-56 | -8.615850e-47 |
| Msa0844060 | Msa1365150 | 0.819630 | 1.049753e-52 | -8.615850e-47 |
| Msa0844060 | Msa1367880 | 0.810496 | 1.119721e-50 | -8.615850e-47 |
| Msa0844060 | Msa1435750 | 0.803934 | 2.749958e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844060 | MtrunA17_Chr5g0414521 | 82.143 | 56 | 10 | 0 | 17 | 72 | 1 | 56 | 3.07e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATGGCGACGGTGGTTTC+CGG | 0.301036 | 5_4:+22061563 | Msa0844060:CDS |
| CCCAGTTCACACAGATATTC+AGG | 0.322962 | 5_4:+22063001 | Msa0844060:CDS |
| CTGCTTTCTGCAACCGTTGT+TGG | 0.335188 | 5_4:-22061532 | None:intergenic |
| AATCCAATTGAGCAATTTCC+CGG | 0.342157 | 5_4:-22061840 | None:intergenic |
| AAACCGGGAAATTGCTCAAT+TGG | 0.345610 | 5_4:+22061837 | Msa0844060:CDS |
| TCCTGAATATCTGTGTGAAC+TGG | 0.362048 | 5_4:-22063002 | None:intergenic |
| TGCAAGTCAAATTGAACTCT+TGG | 0.364328 | 5_4:+22061685 | Msa0844060:CDS |
| TAGAACAACACCTTCAAATC+TGG | 0.373686 | 5_4:-22063028 | None:intergenic |
| TTAGGTCACGCTCTCAAAAC+CGG | 0.385073 | 5_4:+22061821 | Msa0844060:intron |
| TCTAGGATTTGTTCAAAAGA+AGG | 0.418770 | 5_4:+22062398 | Msa0844060:intron |
| ATCCTCATCGTCGCCGGAGT+TGG | 0.454703 | 5_4:+22061710 | Msa0844060:CDS |
| GTGAAATGTCGAGGAGCAAC+GGG | 0.458005 | 5_4:-22061650 | None:intergenic |
| CTAATCATTAAACTTGCAAT+CGG | 0.465948 | 5_4:-22066913 | None:intergenic |
| GAACTGGGGCACCACCTTGA+AGG | 0.469006 | 5_4:-22062986 | None:intergenic |
| CCTGAATATCTGTGTGAACT+GGG | 0.494382 | 5_4:-22063001 | None:intergenic |
| TCAATTGGATTCGCAAACCC+TGG | 0.504749 | 5_4:+22061852 | Msa0844060:CDS |
| AGCAACGGGATCGAGGGCGG+TGG | 0.505897 | 5_4:-22061636 | None:intergenic |
| TTCAGGAACTCCAGATTTGA+AGG | 0.506319 | 5_4:+22063018 | Msa0844060:CDS |
| GAAAGCAGAGCATAGAGCTA+TGG | 0.508857 | 5_4:+22061547 | Msa0844060:CDS |
| CTACAGGGTTTCAAAGGCAT+TGG | 0.510960 | 5_4:+22063204 | Msa0844060:intron |
| TTGGATATCCTCATCGTCGC+CGG | 0.529064 | 5_4:+22061704 | Msa0844060:CDS |
| TGAGGAGGATCATTCTGTAC+AGG | 0.533811 | 5_4:+22062450 | Msa0844060:CDS |
| AGGTTAGAAAATAGTTATAC+CGG | 0.534492 | 5_4:+22062418 | Msa0844060:CDS |
| TGCAAGTTTAATGATTAGCA+AGG | 0.537556 | 5_4:+22066918 | Msa0844060:CDS |
| AACCTATGCAGGCTTCAGAC+AGG | 0.544641 | 5_4:+22063245 | Msa0844060:CDS |
| GCAAGTTTAATGATTAGCAA+GGG | 0.547698 | 5_4:+22066919 | Msa0844060:CDS |
| AGGCATTGGAGAAGCGTACA+TGG | 0.549987 | 5_4:+22063218 | Msa0844060:CDS |
| GAAGAATCTTCTTCGTGAGG+AGG | 0.552980 | 5_4:-22061599 | None:intergenic |
| TACCAACTCCGGCGACGATG+AGG | 0.557962 | 5_4:-22061712 | None:intergenic |
| TTTCGCCTACAGGGTTTCAA+AGG | 0.561132 | 5_4:+22063198 | Msa0844060:intron |
| TAGGTCACGCTCTCAAAACC+GGG | 0.562221 | 5_4:+22061822 | Msa0844060:intron |
| GTCGAGGAGCAACGGGATCG+AGG | 0.566645 | 5_4:-22061643 | None:intergenic |
| AGGAGCAACGGGATCGAGGG+CGG | 0.570189 | 5_4:-22061639 | None:intergenic |
| AGTGAAATGTCGAGGAGCAA+CGG | 0.571296 | 5_4:-22061651 | None:intergenic |
| TCGAGGAGCAACGGGATCGA+GGG | 0.571430 | 5_4:-22061642 | None:intergenic |
| CAATTGGATTCGCAAACCCT+GGG | 0.579078 | 5_4:+22061853 | Msa0844060:CDS |
| TTATACCGGTCCCGAAAATG+AGG | 0.580005 | 5_4:+22062432 | Msa0844060:CDS |
| TACATGGCAGAAACCTATGC+AGG | 0.588916 | 5_4:+22063234 | Msa0844060:CDS |
| CAAGTTTAATGATTAGCAAG+GGG | 0.597308 | 5_4:+22066920 | Msa0844060:CDS |
| GGGAAGTACAGTACCAACTC+CGG | 0.630255 | 5_4:-22061723 | None:intergenic |
| GACCTGTCTGAAGCCTGCAT+AGG | 0.640690 | 5_4:-22063247 | None:intergenic |
| CTGAATATCTGTGTGAACTG+GGG | 0.642299 | 5_4:-22063000 | None:intergenic |
| GAAGAAGAATCTTCTTCGTG+AGG | 0.644672 | 5_4:-22061602 | None:intergenic |
| TACCGGTCCCGAAAATGAGG+AGG | 0.658139 | 5_4:+22062435 | Msa0844060:CDS |
| GCATAGAGCTATGGCGACGG+TGG | 0.658469 | 5_4:+22061556 | Msa0844060:CDS |
| TTATTGAGAGTGAAATGTCG+AGG | 0.675029 | 5_4:-22061659 | None:intergenic |
| AGAGCATAGAGCTATGGCGA+CGG | 0.699806 | 5_4:+22061553 | Msa0844060:CDS |
| TGAGAAACGATAACCAACAA+CGG | 0.722414 | 5_4:+22061519 | Msa0844060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAATTAGTATTAGTT+TGG | - | chr5_4:22062081-22062100 | None:intergenic | 10.0% |
| !! | AATACTAATTAAATAAGTTA+AGG | + | chr5_4:22062085-22062104 | Msa0844060:intron | 10.0% |
| !! | ATACTAATTAAATAAGTTAA+GGG | + | chr5_4:22062086-22062105 | Msa0844060:intron | 10.0% |
| !! | TTAACTTATTTAATTAGTAT+TGG | - | chr5_4:22062086-22062105 | None:intergenic | 10.0% |
| !! | AAATTTCAAATTACTAATTA+GGG | - | chr5_4:22063149-22063168 | None:intergenic | 10.0% |
| !! | TAAATTTCAAATTACTAATT+AGG | - | chr5_4:22063150-22063169 | None:intergenic | 10.0% |
| !!! | AACATACATTTTAATATAAT+AGG | + | chr5_4:22064960-22064979 | Msa0844060:intron | 10.0% |
| !! | ATGTTGTAATCATTATTATT+AGG | + | chr5_4:22061877-22061896 | Msa0844060:intron | 15.0% |
| !! | TTTGAATTAAATTAACAGAA+GGG | - | chr5_4:22062191-22062210 | None:intergenic | 15.0% |
| !!! | TTTTGAATTAAATTAACAGA+AGG | - | chr5_4:22062190-22062209 | None:intergenic | 15.0% |
| !!! | TTATTTAATTAGTATTGGTT+TGG | - | chr5_4:22062145-22062164 | None:intergenic | 15.0% |
| !!! | CTTAACTTTATTTAAAGTTA+CGG | - | chr5_4:22062223-22062242 | None:intergenic | 15.0% |
| !! | GTAACTTTAAATAAAGTTAA+GGG | + | chr5_4:22062222-22062241 | Msa0844060:intron | 15.0% |
| !! | TAACTTTAAATAAAGTTAAG+GGG | + | chr5_4:22062223-22062242 | Msa0844060:intron | 15.0% |
| !! | ATTTAACCCTTATTATTATT+AGG | + | chr5_4:22062316-22062335 | Msa0844060:intron | 15.0% |
| !! | TTTAACCCTTATTATTATTA+GGG | + | chr5_4:22062317-22062336 | Msa0844060:intron | 15.0% |
| !! | ATAAACCCTAATAATAATAA+GGG | - | chr5_4:22062325-22062344 | None:intergenic | 15.0% |
| !! | TTTCTTACATTAATAATATG+TGG | + | chr5_4:22062483-22062502 | Msa0844060:intron | 15.0% |
| !! | AAAAAAATCAATAAGGATTT+GGG | - | chr5_4:22064826-22064845 | None:intergenic | 15.0% |
| !! | TAAAAAAATCAATAAGGATT+TGG | - | chr5_4:22064827-22064846 | None:intergenic | 15.0% |
| !! | CTTGTTTAAAAAAATCAATA+AGG | - | chr5_4:22064833-22064852 | None:intergenic | 15.0% |
| !! | CATTTGATAAATTATGTATT+TGG | + | chr5_4:22065410-22065429 | Msa0844060:intron | 15.0% |
| !!! | ATTCTAAAATAATCGTATTT+TGG | + | chr5_4:22066145-22066164 | Msa0844060:intron | 15.0% |
| !! | TTAGTACCATAAGTAATAAA+AGG | + | chr5_4:22061927-22061946 | Msa0844060:intron | 20.0% |
| !! | GATACTTTAAATAAAGTCAA+GGG | - | chr5_4:22062008-22062027 | None:intergenic | 20.0% |
| !!! | CTTGACTTTATTTAAAGTAT+CGG | + | chr5_4:22062007-22062026 | Msa0844060:intron | 20.0% |
| !! | TTCAAAAAAACGTTAAAGTT+TGG | - | chr5_4:22062177-22062196 | None:intergenic | 20.0% |
| !! | CGTAACTTTAAATAAAGTTA+AGG | + | chr5_4:22062221-22062240 | Msa0844060:intron | 20.0% |
| !!! | TTGGTCTTATAAGTAATAAA+AGG | - | chr5_4:22062259-22062278 | None:intergenic | 20.0% |
| !! | CATAAACCCTAATAATAATA+AGG | - | chr5_4:22062326-22062345 | None:intergenic | 20.0% |
| !! | TCATTCATTATCTGTTATAT+TGG | + | chr5_4:22062566-22062585 | Msa0844060:intron | 20.0% |
| !!! | ATTTTATATAGAAAGAACTG+TGG | + | chr5_4:22062783-22062802 | Msa0844060:intron | 20.0% |
| !!! | GAGATGACTTTTAAATTAAA+AGG | + | chr5_4:22062923-22062942 | Msa0844060:intron | 20.0% |
| !!! | GTTCTATCTTATTTTTCTAA+CGG | + | chr5_4:22063045-22063064 | Msa0844060:CDS | 20.0% |
| !! | AAAGAAAAGAATAAGAAAAC+TGG | + | chr5_4:22063544-22063563 | Msa0844060:intron | 20.0% |
| !! | AAGAAAAGAATAAGAAAACT+GGG | + | chr5_4:22063545-22063564 | Msa0844060:intron | 20.0% |
| !!! | AGAGAAATTCAATTTTCATA+TGG | - | chr5_4:22063688-22063707 | None:intergenic | 20.0% |
| !! | AAAAAATCAATAAGGATTTG+GGG | - | chr5_4:22064825-22064844 | None:intergenic | 20.0% |
| !!! | ATTGACTCATAACATAATAT+AGG | + | chr5_4:22065224-22065243 | Msa0844060:intron | 20.0% |
| !! | TCATAACATAATATAGGTTA+AGG | + | chr5_4:22065230-22065249 | Msa0844060:intron | 20.0% |
| !! | CATAACATAATATAGGTTAA+GGG | + | chr5_4:22065231-22065250 | Msa0844060:intron | 20.0% |
| !!! | GTAAATTGTTTCTTGTAAAT+AGG | + | chr5_4:22065479-22065498 | Msa0844060:intron | 20.0% |
| !! | CTAAACTAAAACAAAGTTAA+TGG | - | chr5_4:22065909-22065928 | None:intergenic | 20.0% |
| !!! | TTAACCAATTTTTTTTTGTG+TGG | + | chr5_4:22066291-22066310 | Msa0844060:intron | 20.0% |
| !! | CATTAGTTAACAATAAGAAA+TGG | + | chr5_4:22066327-22066346 | Msa0844060:intron | 20.0% |
| !! | AAATGACAAAACAAACAATT+GGG | - | chr5_4:22066408-22066427 | None:intergenic | 20.0% |
| !! | AAAATGACAAAACAAACAAT+TGG | - | chr5_4:22066409-22066428 | None:intergenic | 20.0% |
| !! | AAATGCTCAATTTCAAGTAT+CGG | + | chr5_4:22061903-22061922 | Msa0844060:intron | 25.0% |
| ! | CGATACTTTAAATAAAGTCA+AGG | - | chr5_4:22062009-22062028 | None:intergenic | 25.0% |
| !! | CTTTATTTAAAGTTACGGTT+GGG | - | chr5_4:22062218-22062237 | None:intergenic | 25.0% |
| !! | ACTTTATTTAAAGTTACGGT+TGG | - | chr5_4:22062219-22062238 | None:intergenic | 25.0% |
| ! | ACTTTGATTATTGCATTTCT+AGG | + | chr5_4:22062381-22062400 | Msa0844060:intron | 25.0% |
| ! | AGGTTAGAAAATAGTTATAC+CGG | + | chr5_4:22062418-22062437 | Msa0844060:CDS | 25.0% |
| ! | CTGAATATGCTAATTCTATT+TGG | + | chr5_4:22062534-22062553 | Msa0844060:intron | 25.0% |
| ! | TATGCTAATTCTATTTGGTT+TGG | + | chr5_4:22062539-22062558 | Msa0844060:intron | 25.0% |
| ! | TATAAAATCAGTGTAGAAAG+TGG | - | chr5_4:22062771-22062790 | None:intergenic | 25.0% |
| !!! | AATACCACCTTATTTTCATT+TGG | - | chr5_4:22062831-22062850 | None:intergenic | 25.0% |
| ! | TCTAAATATAAGTGTGTGTT+TGG | - | chr5_4:22062905-22062924 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTGAGAATGTGAA+GGG | - | chr5_4:22063532-22063551 | None:intergenic | 25.0% |
| ! | AGAAAAGAATAAGAAAACTG+GGG | + | chr5_4:22063546-22063565 | Msa0844060:intron | 25.0% |
| !!! | TAAAACCTGTTTCTGAATTT+CGG | - | chr5_4:22063631-22063650 | None:intergenic | 25.0% |
| ! | TTTGTGAAACACAATGATAT+GGG | - | chr5_4:22063792-22063811 | None:intergenic | 25.0% |
| ! | CATAAATACAAAGTGAAAGA+TGG | - | chr5_4:22063887-22063906 | None:intergenic | 25.0% |
| ! | CATCTTTCACTTTGTATTTA+TGG | + | chr5_4:22063885-22063904 | Msa0844060:intron | 25.0% |
| ! | AATGCATCAATACATGATAA+TGG | + | chr5_4:22063916-22063935 | Msa0844060:intron | 25.0% |
| ! | TTCAAAAGCCAAATATTCTA+GGG | - | chr5_4:22064408-22064427 | None:intergenic | 25.0% |
| ! | ATTCAAAAGCCAAATATTCT+AGG | - | chr5_4:22064409-22064428 | None:intergenic | 25.0% |
| ! | AATTACAACTGCATATGTAA+TGG | + | chr5_4:22064474-22064493 | Msa0844060:intron | 25.0% |
| ! | ATATATGGTAAATGAAGAGT+GGG | - | chr5_4:22064614-22064633 | None:intergenic | 25.0% |
| !!! | CTTTTTGACTTTACAAAGAA+AGG | - | chr5_4:22064703-22064722 | None:intergenic | 25.0% |
| !!! | ATCGAACAAAGTTTTAAATC+TGG | - | chr5_4:22065090-22065109 | None:intergenic | 25.0% |
| !! | ATTTAAAACTTTGTTCGATG+TGG | + | chr5_4:22065091-22065110 | Msa0844060:intron | 25.0% |
| ! | CTTGGATTTGTATAAATTCA+AGG | + | chr5_4:22065143-22065162 | Msa0844060:intron | 25.0% |
| ! | AACAAGACATATTATGTTAG+AGG | - | chr5_4:22065203-22065222 | None:intergenic | 25.0% |
| !! | TGGAAAAGTTTTCTAATGTA+TGG | + | chr5_4:22065287-22065306 | Msa0844060:intron | 25.0% |
| ! | TCAGTATATTCTTTGACATT+AGG | - | chr5_4:22065695-22065714 | None:intergenic | 25.0% |
| !! | TTATGATTTTTGAATGTGAG+AGG | + | chr5_4:22066026-22066045 | Msa0844060:intron | 25.0% |
| ! | TTCTCCACACAAAAAAAAAT+TGG | - | chr5_4:22066298-22066317 | None:intergenic | 25.0% |
| ! | ACAACAAATATCAAGTTCTT+GGG | - | chr5_4:22066482-22066501 | None:intergenic | 25.0% |
| ! | AACAACAAATATCAAGTTCT+TGG | - | chr5_4:22066483-22066502 | None:intergenic | 25.0% |
| ! | ATCGTTAAATCAAAAAATGC+AGG | - | chr5_4:22066547-22066566 | None:intergenic | 25.0% |
| ! | AAAATTTAGTTGCAAGAGAT+TGG | + | chr5_4:22066802-22066821 | Msa0844060:intron | 25.0% |
| ! | CTAATCATTAAACTTGCAAT+CGG | - | chr5_4:22066916-22066935 | None:intergenic | 25.0% |
| !!! | GTTTTAGAATTAATAACGCG+TGG | + | chr5_4:22061483-22061502 | Msa0844060:five_prime_UTR | 30.0% |
| TAATGATTACAACATACCCA+GGG | - | chr5_4:22061872-22061891 | None:intergenic | 30.0% | |
| ATAATGATTACAACATACCC+AGG | - | chr5_4:22061873-22061892 | None:intergenic | 30.0% | |
| ! | TACGGACCTTTTATTACTTA+TGG | - | chr5_4:22061936-22061955 | None:intergenic | 30.0% |
| ! | CCTTTTTCCTTCGAAAATTA+CGG | - | chr5_4:22061954-22061973 | None:intergenic | 30.0% |
| AAGTAATAAAAGGTCCGTTT+AGG | - | chr5_4:22062249-22062268 | None:intergenic | 30.0% | |
| ! | CTTAACTTGGTTTCAAGTAT+CGG | - | chr5_4:22062283-22062302 | None:intergenic | 30.0% |
| GATACTTGAAACCAAGTTAA+GGG | + | chr5_4:22062282-22062301 | Msa0844060:intron | 30.0% | |
| ! | TTGTGAAAGGTATAATGAGA+TGG | - | chr5_4:22062362-22062381 | None:intergenic | 30.0% |
| GCAATAATCAAAGTTGTGAA+AGG | - | chr5_4:22062375-22062394 | None:intergenic | 30.0% | |
| ! | TCTAGGATTTGTTCAAAAGA+AGG | + | chr5_4:22062398-22062417 | Msa0844060:intron | 30.0% |
| AGGGAAACCAAATGAAAATA+AGG | + | chr5_4:22062821-22062840 | Msa0844060:intron | 30.0% | |
| GAAACCAAATGAAAATAAGG+TGG | + | chr5_4:22062824-22062843 | Msa0844060:intron | 30.0% | |
| ! | TTTTCTAACGGTAACAAGTT+TGG | + | chr5_4:22063057-22063076 | Msa0844060:intron | 30.0% |
| !! | CTTTTCTTTTGAGAATGTGA+AGG | - | chr5_4:22063533-22063552 | None:intergenic | 30.0% |
| GAAAAGAATAAGAAAACTGG+GGG | + | chr5_4:22063547-22063566 | Msa0844060:intron | 30.0% | |
| !! | AAAACCTGTTTCTGAATTTC+GGG | - | chr5_4:22063630-22063649 | None:intergenic | 30.0% |
| ! | TGGCATTCATCTTTTTGATA+TGG | - | chr5_4:22063723-22063742 | None:intergenic | 30.0% |
| TTGTGAAACACAATGATATG+GGG | - | chr5_4:22063791-22063810 | None:intergenic | 30.0% | |
| CTTTGTGAAACACAATGATA+TGG | - | chr5_4:22063793-22063812 | None:intergenic | 30.0% | |
| TGAAAGATGGATAGGAAATA+TGG | - | chr5_4:22063874-22063893 | None:intergenic | 30.0% | |
| ATACAAAGTGAAAGATGGAT+AGG | - | chr5_4:22063882-22063901 | None:intergenic | 30.0% | |
| TTTGCTTAATCTGTGTGAAT+TGG | + | chr5_4:22063981-22064000 | Msa0844060:intron | 30.0% | |
| ! | AAGGGCATGAAAAAATTATC+TGG | + | chr5_4:22064349-22064368 | Msa0844060:intron | 30.0% |
| ATTGGTCAAAAGTCTAATTG+AGG | - | chr5_4:22064377-22064396 | None:intergenic | 30.0% | |
| ! | TCAATTAGACTTTTGACCAA+TGG | + | chr5_4:22064376-22064395 | Msa0844060:intron | 30.0% |
| TCAAAAGCCAAATATTCTAG+GGG | - | chr5_4:22064407-22064426 | None:intergenic | 30.0% | |
| AAATCGTATTAGCTAAAGCA+AGG | + | chr5_4:22064432-22064451 | Msa0844060:intron | 30.0% | |
| ACATATGCAGTTGTAATTGA+GGG | - | chr5_4:22064472-22064491 | None:intergenic | 30.0% | |
| TACATATGCAGTTGTAATTG+AGG | - | chr5_4:22064473-22064492 | None:intergenic | 30.0% | |
| GATATATGGTAAATGAAGAG+TGG | - | chr5_4:22064615-22064634 | None:intergenic | 30.0% | |
| ! | TTGTAATAGAGAGTGTGATA+AGG | - | chr5_4:22064637-22064656 | None:intergenic | 30.0% |
| TTGTAAAGTCAAAAAGCAAC+AGG | + | chr5_4:22064707-22064726 | Msa0844060:intron | 30.0% | |
| !!! | CACAGTCTGTTTTTTAGTAT+TGG | - | chr5_4:22064750-22064769 | None:intergenic | 30.0% |
| ATACTAAAAAACAGACTGTG+AGG | + | chr5_4:22064750-22064769 | Msa0844060:intron | 30.0% | |
| TACTAAAAAACAGACTGTGA+GGG | + | chr5_4:22064751-22064770 | Msa0844060:intron | 30.0% | |
| ! | TCATGCAATAGTGTTTTTCA+TGG | + | chr5_4:22065031-22065050 | Msa0844060:intron | 30.0% |
| ! | ATAGTGTTTTTCATGGTCAA+TGG | + | chr5_4:22065038-22065057 | Msa0844060:intron | 30.0% |
| AACATAATATAGGTTAAGGG+TGG | + | chr5_4:22065234-22065253 | Msa0844060:intron | 30.0% | |
| ACATAATATAGGTTAAGGGT+GGG | + | chr5_4:22065235-22065254 | Msa0844060:intron | 30.0% | |
| ! | GTCAACTGTTTCTTGTAAAA+AGG | - | chr5_4:22065380-22065399 | None:intergenic | 30.0% |
| ! | TTGTTTCTTGTAAATAGGAC+CGG | + | chr5_4:22065484-22065503 | Msa0844060:intron | 30.0% |
| ATCTATAGCATTCACCAAAA+TGG | + | chr5_4:22065527-22065546 | Msa0844060:intron | 30.0% | |
| TCTATAGCATTCACCAAAAT+GGG | + | chr5_4:22065528-22065547 | Msa0844060:intron | 30.0% | |
| AATATACTGATCTGAGTTGT+TGG | + | chr5_4:22065705-22065724 | Msa0844060:intron | 30.0% | |
| ! | GTTTGTAAAGCTTTGATTAG+TGG | + | chr5_4:22065949-22065968 | Msa0844060:intron | 30.0% |
| !! | TTTTTGTGGTGATTTTTGAG+AGG | + | chr5_4:22065995-22066014 | Msa0844060:intron | 30.0% |
| !!! | AAGGCTATGTTTTAACTTGA+AGG | + | chr5_4:22066055-22066074 | Msa0844060:intron | 30.0% |
| ! | TAGCAATTGAGTTCAGTTTT+TGG | - | chr5_4:22066189-22066208 | None:intergenic | 30.0% |
| ! | TTCCAACAAAAGTCGTATTT+TGG | + | chr5_4:22066210-22066229 | Msa0844060:intron | 30.0% |
| ! | TCCAACAAAAGTCGTATTTT+GGG | + | chr5_4:22066211-22066230 | Msa0844060:intron | 30.0% |
| ACGATACTAGATTGAGAAAA+AGG | + | chr5_4:22066377-22066396 | Msa0844060:intron | 30.0% | |
| ACGATACTAGATTGAGAAAA+AGG | + | chr5_4:22066377-22066396 | Msa0844060:intron | 30.0% | |
| TCACTACAACAAAAACAACA+AGG | - | chr5_4:22066667-22066686 | None:intergenic | 30.0% | |
| ATTTGCAAGTTTCAGATCTA+AGG | + | chr5_4:22066763-22066782 | Msa0844060:intron | 30.0% | |
| TTTGCAAGTTTCAGATCTAA+GGG | + | chr5_4:22066764-22066783 | Msa0844060:intron | 30.0% | |
| TGCAAGTTTAATGATTAGCA+AGG | + | chr5_4:22066918-22066937 | Msa0844060:CDS | 30.0% | |
| GCAAGTTTAATGATTAGCAA+GGG | + | chr5_4:22066919-22066938 | Msa0844060:CDS | 30.0% | |
| CAAGTTTAATGATTAGCAAG+GGG | + | chr5_4:22066920-22066939 | Msa0844060:CDS | 30.0% | |
| TGAGAAACGATAACCAACAA+CGG | + | chr5_4:22061519-22061538 | Msa0844060:CDS | 35.0% | |
| TTATTGAGAGTGAAATGTCG+AGG | - | chr5_4:22061662-22061681 | None:intergenic | 35.0% | |
| TGCAAGTCAAATTGAACTCT+TGG | + | chr5_4:22061685-22061704 | Msa0844060:CDS | 35.0% | |
| GAGAAGAACATAACAAAGCA+TGG | - | chr5_4:22061781-22061800 | None:intergenic | 35.0% | |
| ! | TTCACTCCGTTTGTTTCTTT+AGG | + | chr5_4:22061803-22061822 | Msa0844060:intron | 35.0% |
| AATCCAATTGAGCAATTTCC+CGG | - | chr5_4:22061843-22061862 | None:intergenic | 35.0% | |
| ! | AAAAGGTCCGTAATTTTCGA+AGG | + | chr5_4:22061944-22061963 | Msa0844060:intron | 35.0% |
| ! | CCGTAATTTTCGAAGGAAAA+AGG | + | chr5_4:22061951-22061970 | Msa0844060:intron | 35.0% |
| ! | CAGACCTTTTATCACCTAAA+CGG | - | chr5_4:22061978-22061997 | None:intergenic | 35.0% |
| AGGTGATAAAAGGTCTGTTT+AGG | + | chr5_4:22061981-22062000 | Msa0844060:intron | 35.0% | |
| ATAAAGTTAAGGGGCCTAAA+CGG | + | chr5_4:22062232-22062251 | Msa0844060:intron | 35.0% | |
| CGATACTTGAAACCAAGTTA+AGG | + | chr5_4:22062281-22062300 | Msa0844060:intron | 35.0% | |
| ! | AGAATGATCCTCCTCATTTT+CGG | - | chr5_4:22062446-22062465 | None:intergenic | 35.0% |
| TGTAGAAAGTGGAAACAAGA+TGG | - | chr5_4:22062760-22062779 | None:intergenic | 35.0% | |
| TAGAACAACACCTTCAAATC+TGG | - | chr5_4:22063031-22063050 | None:intergenic | 35.0% | |
| GCTGTCATTATCTGTTACTA+TGG | + | chr5_4:22063079-22063098 | Msa0844060:intron | 35.0% | |
| ACCTAAGCATGATACTTTAG+TGG | + | chr5_4:22063305-22063324 | Msa0844060:intron | 35.0% | |
| TGCTGCAATTTAAGCAACTA+TGG | - | chr5_4:22063410-22063429 | None:intergenic | 35.0% | |
| ! | CATCTTTTTGATATGGCAAC+AGG | - | chr5_4:22063716-22063735 | None:intergenic | 35.0% |
| AACACAATGATATGGGGATA+CGG | - | chr5_4:22063785-22063804 | None:intergenic | 35.0% | |
| CGTTGGACTTGTATTCAAAT+TGG | - | chr5_4:22063835-22063854 | None:intergenic | 35.0% | |
| GTCAACTAGGTAAGTTATCT+TGG | + | chr5_4:22064003-22064022 | Msa0844060:intron | 35.0% | |
| CTAGGTAAGTTATCTTGGAA+AGG | + | chr5_4:22064008-22064027 | Msa0844060:intron | 35.0% | |
| GTAAGTTATCTTGGAAAGGA+GGG | + | chr5_4:22064012-22064031 | Msa0844060:intron | 35.0% | |
| CAGTACACACAAGGAAATAT+GGG | - | chr5_4:22064282-22064301 | None:intergenic | 35.0% | |
| ACAGTACACACAAGGAAATA+TGG | - | chr5_4:22064283-22064302 | None:intergenic | 35.0% | |
| !!! | AATTTTTTCATGCCCTTCCT+TGG | - | chr5_4:22064346-22064365 | None:intergenic | 35.0% |
| ! | TATTCTAGGGGTTATACCAT+TGG | - | chr5_4:22064395-22064414 | None:intergenic | 35.0% |
| GGTATAACCCCTAGAATATT+TGG | + | chr5_4:22064397-22064416 | Msa0844060:intron | 35.0% | |
| AGAATATTGTCTAGCTGAGA+AGG | - | chr5_4:22064554-22064573 | None:intergenic | 35.0% | |
| GCTAGACAATATTCTTACCA+AGG | + | chr5_4:22064559-22064578 | Msa0844060:intron | 35.0% | |
| ! | GAGAGTGTGATAAGGATATA+TGG | - | chr5_4:22064629-22064648 | None:intergenic | 35.0% |
| ACTAAAAAACAGACTGTGAG+GGG | + | chr5_4:22064752-22064771 | Msa0844060:intron | 35.0% | |
| !!! | AGGGGATTTTTTTCTCTTTC+CGG | + | chr5_4:22064770-22064789 | Msa0844060:intron | 35.0% |
| ! | AATCAATAAGGATTTGGGGT+GGG | - | chr5_4:22064821-22064840 | None:intergenic | 35.0% |
| AAATCAATAAGGATTTGGGG+TGG | - | chr5_4:22064822-22064841 | None:intergenic | 35.0% | |
| GAACATCATAACAGTAAGTC+AGG | + | chr5_4:22064892-22064911 | Msa0844060:intron | 35.0% | |
| CATGATAGCACATAGATGAA+TGG | - | chr5_4:22065016-22065035 | None:intergenic | 35.0% | |
| GCATGTAAGACATTCTAACT+TGG | + | chr5_4:22065125-22065144 | Msa0844060:intron | 35.0% | |
| CATAATATAGGTTAAGGGTG+GGG | + | chr5_4:22065236-22065255 | Msa0844060:intron | 35.0% | |
| TATTGTCTAGTGGCTTATCA+GGG | - | chr5_4:22065338-22065357 | None:intergenic | 35.0% | |
| AGTAGTTTGGTATTGTCTAG+TGG | - | chr5_4:22065348-22065367 | None:intergenic | 35.0% | |
| ! | CTGTTTCTTGTAAAAAGGAC+CGG | - | chr5_4:22065375-22065394 | None:intergenic | 35.0% |
| CTATAGCATTCACCAAAATG+GGG | + | chr5_4:22065529-22065548 | Msa0844060:intron | 35.0% | |
| TATAGCATTCACCAAAATGG+GGG | + | chr5_4:22065530-22065549 | Msa0844060:intron | 35.0% | |
| ! | TGGTGATGCTATATGTTGTT+AGG | + | chr5_4:22065725-22065744 | Msa0844060:intron | 35.0% |
| AAAAAGAGACACGTAAGACA+AGG | - | chr5_4:22065793-22065812 | None:intergenic | 35.0% | |
| ! | TGAATGTGAGAGGTTTTTCA+AGG | + | chr5_4:22066036-22066055 | Msa0844060:intron | 35.0% |
| CCACATTATAACACAACTCA+AGG | - | chr5_4:22066093-22066112 | None:intergenic | 35.0% | |
| ! | CCTTGAGTTGTGTTATAATG+TGG | + | chr5_4:22066090-22066109 | Msa0844060:intron | 35.0% |
| ! | CCAACAAAAGTCGTATTTTG+GGG | + | chr5_4:22066212-22066231 | Msa0844060:intron | 35.0% |
| ! | TTCCCTCAATAATCGTTTTC+TGG | + | chr5_4:22066249-22066268 | Msa0844060:intron | 35.0% |
| CTCCAGAAAACGATTATTGA+GGG | - | chr5_4:22066254-22066273 | None:intergenic | 35.0% | |
| TCTCCAGAAAACGATTATTG+AGG | - | chr5_4:22066255-22066274 | None:intergenic | 35.0% | |
| !! | TAACGATGCTTTGATTTTGC+AGG | + | chr5_4:22066560-22066579 | Msa0844060:intron | 35.0% |
| !! | AACGATGCTTTGATTTTGCA+GGG | + | chr5_4:22066561-22066580 | Msa0844060:intron | 35.0% |
| AATTTAGGAGTTGCTGTCAT+TGG | + | chr5_4:22066597-22066616 | Msa0844060:intron | 35.0% | |
| CTACAACAAAAACAACAAGG+AGG | - | chr5_4:22066664-22066683 | None:intergenic | 35.0% | |
| GTCGATTGAATGTTCATCTA+CGG | + | chr5_4:22066725-22066744 | Msa0844060:intron | 35.0% | |
| TTGCAAGTTTCAGATCTAAG+GGG | + | chr5_4:22066765-22066784 | Msa0844060:intron | 35.0% | |
| GAAGAAGAATCTTCTTCGTG+AGG | - | chr5_4:22061605-22061624 | None:intergenic | 40.0% | |
| GCGTGACCTAAAGAAACAAA+CGG | - | chr5_4:22061812-22061831 | None:intergenic | 40.0% | |
| AAACCGGGAAATTGCTCAAT+TGG | + | chr5_4:22061837-22061856 | Msa0844060:CDS | 40.0% | |
| AGGTCCGTTTAGGTGATAAA+AGG | + | chr5_4:22061971-22061990 | Msa0844060:intron | 40.0% | |
| !! | CTTGGTTTCAAGTATCGGTT+TGG | - | chr5_4:22062278-22062297 | None:intergenic | 40.0% |
| GCTCAATTAGTCCCTTAACT+TGG | - | chr5_4:22062296-22062315 | None:intergenic | 40.0% | |
| ! | GAATGATCCTCCTCATTTTC+GGG | - | chr5_4:22062445-22062464 | None:intergenic | 40.0% |
| ACACTTATAGCAGACGTACA+AGG | + | chr5_4:22062614-22062633 | Msa0844060:intron | 40.0% | |
| CACTTATAGCAGACGTACAA+GGG | + | chr5_4:22062615-22062634 | Msa0844060:intron | 40.0% | |
| ATCTTCATGCTCACTCACTT+GGG | - | chr5_4:22062668-22062687 | None:intergenic | 40.0% | |
| TATCTTCATGCTCACTCACT+TGG | - | chr5_4:22062669-22062688 | None:intergenic | 40.0% | |
| TGTGGAAACAATGCTGTATC+AGG | + | chr5_4:22062801-22062820 | Msa0844060:intron | 40.0% | |
| GTGGAAACAATGCTGTATCA+GGG | + | chr5_4:22062802-22062821 | Msa0844060:intron | 40.0% | |
| CTGAATATCTGTGTGAACTG+GGG | - | chr5_4:22063003-22063022 | None:intergenic | 40.0% | |
| CCTGAATATCTGTGTGAACT+GGG | - | chr5_4:22063004-22063023 | None:intergenic | 40.0% | |
| TCCTGAATATCTGTGTGAAC+TGG | - | chr5_4:22063005-22063024 | None:intergenic | 40.0% | |
| TTCAGGAACTCCAGATTTGA+AGG | + | chr5_4:22063018-22063037 | Msa0844060:CDS | 40.0% | |
| ! | ATGATACTGTTTTCGCCTAC+AGG | + | chr5_4:22063188-22063207 | Msa0844060:intron | 40.0% |
| ! | TGATACTGTTTTCGCCTACA+GGG | + | chr5_4:22063189-22063208 | Msa0844060:intron | 40.0% |
| ! | GCCACTAAAGTATCATGCTT+AGG | - | chr5_4:22063309-22063328 | None:intergenic | 40.0% |
| ATTGGTGTAGCACTTTAGTG+TGG | + | chr5_4:22063360-22063379 | Msa0844060:intron | 40.0% | |
| TGCCATCGCTTTCATAATTG+CGG | + | chr5_4:22063384-22063403 | Msa0844060:intron | 40.0% | |
| ATATGGGGATACGGAAGTAA+GGG | - | chr5_4:22063776-22063795 | None:intergenic | 40.0% | |
| !!! | GACTTTTTTCACAGACACGT+TGG | - | chr5_4:22063852-22063871 | None:intergenic | 40.0% |
| TCTGTGTGAATTGGTCAACT+AGG | + | chr5_4:22063990-22064009 | Msa0844060:intron | 40.0% | |
| GGTAAGTTATCTTGGAAAGG+AGG | + | chr5_4:22064011-22064030 | Msa0844060:intron | 40.0% | |
| TGAAGAGCAGACTCTATCAA+AGG | - | chr5_4:22064066-22064085 | None:intergenic | 40.0% | |
| TCTTCAAACATGTGCATCCA+TGG | + | chr5_4:22064080-22064099 | Msa0844060:intron | 40.0% | |
| TGCTGCTGAGAAAATTACCA+TGG | - | chr5_4:22064100-22064119 | None:intergenic | 40.0% | |
| GTCATGAAACAGTACACACA+AGG | - | chr5_4:22064291-22064310 | None:intergenic | 40.0% | |
| CATAGCATATCTTACCACCA+AGG | + | chr5_4:22064326-22064345 | Msa0844060:intron | 40.0% | |
| CATATCTTACCACCAAGGAA+GGG | + | chr5_4:22064331-22064350 | Msa0844060:intron | 40.0% | |
| TTGGCATGTATGTTATGCCT+TGG | - | chr5_4:22064579-22064598 | None:intergenic | 40.0% | |
| ACAAAGAAAGGTAAGAGACC+CGG | - | chr5_4:22064691-22064710 | None:intergenic | 40.0% | |
| ! | GTCAAAAAGCAACAGGTTGA+AGG | + | chr5_4:22064714-22064733 | Msa0844060:intron | 40.0% |
| !! | TGGGTGAATGGGCTAATTAA+GGG | - | chr5_4:22064802-22064821 | None:intergenic | 40.0% |
| ! | CTAAAGGGTGCAAAGATTCT+AGG | + | chr5_4:22065259-22065278 | Msa0844060:intron | 40.0% |
| GTATTGTCTAGTGGCTTATC+AGG | - | chr5_4:22065339-22065358 | None:intergenic | 40.0% | |
| TTCTTGTAAAAAGGACCGGA+GGG | - | chr5_4:22065371-22065390 | None:intergenic | 40.0% | |
| TTTCTTGTAAAAAGGACCGG+AGG | - | chr5_4:22065372-22065391 | None:intergenic | 40.0% | |
| TTTCTTGTAAATAGGACCGG+AGG | + | chr5_4:22065487-22065506 | Msa0844060:intron | 40.0% | |
| TTCTTGTAAATAGGACCGGA+GGG | + | chr5_4:22065488-22065507 | Msa0844060:intron | 40.0% | |
| TGTTCCTCGTCTATTGAGTT+TGG | + | chr5_4:22065592-22065611 | Msa0844060:intron | 40.0% | |
| ! | AGAGCTTTAATCACTCACCA+AGG | + | chr5_4:22065837-22065856 | Msa0844060:intron | 40.0% |
| ! | CCCCAAAATACGACTTTTGT+TGG | - | chr5_4:22066215-22066234 | None:intergenic | 40.0% |
| ! | CTCCTAAATTCTTTTTCCCC+TGG | - | chr5_4:22066587-22066606 | None:intergenic | 40.0% |
| !! | TATGACTAAAAGAGTGTCGC+TGG | + | chr5_4:22066631-22066650 | Msa0844060:intron | 40.0% |
| TTCAATCGACTACTCGATGA+CGG | - | chr5_4:22066715-22066734 | None:intergenic | 40.0% | |
| !! | TGGTAGACAGAAAAGCATCA+TGG | + | chr5_4:22066822-22066841 | Msa0844060:intron | 40.0% |
| GAAAGCAGAGCATAGAGCTA+TGG | + | chr5_4:22061547-22061566 | Msa0844060:CDS | 45.0% | |
| GAAGAATCTTCTTCGTGAGG+AGG | - | chr5_4:22061602-22061621 | None:intergenic | 45.0% | |
| AGTGAAATGTCGAGGAGCAA+CGG | - | chr5_4:22061654-22061673 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAAAGAGA+GGG | - | chr5_4:22061746-22061765 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAAAGAG+AGG | - | chr5_4:22061747-22061766 | None:intergenic | 45.0% | |
| TTAGGTCACGCTCTCAAAAC+CGG | + | chr5_4:22061821-22061840 | Msa0844060:intron | 45.0% | |
| TCAATTGGATTCGCAAACCC+TGG | + | chr5_4:22061852-22061871 | Msa0844060:CDS | 45.0% | |
| CAATTGGATTCGCAAACCCT+GGG | + | chr5_4:22061853-22061872 | Msa0844060:CDS | 45.0% | |
| CGAAGGAAAAAGGTCCGTTT+AGG | + | chr5_4:22061961-22061980 | Msa0844060:intron | 45.0% | |
| TTATACCGGTCCCGAAAATG+AGG | + | chr5_4:22062432-22062451 | Msa0844060:CDS | 45.0% | |
| TGAGGAGGATCATTCTGTAC+AGG | + | chr5_4:22062450-22062469 | Msa0844060:CDS | 45.0% | |
| GAGGATCATTCTGTACAGGT+GGG | + | chr5_4:22062454-22062473 | Msa0844060:intron | 45.0% | |
| AGGATCATTCTGTACAGGTG+GGG | + | chr5_4:22062455-22062474 | Msa0844060:intron | 45.0% | |
| !! | GAAGAAAGAGGAAAGGTGTC+AGG | - | chr5_4:22062949-22062968 | None:intergenic | 45.0% |
| ACCTTTCCTCTTTCTTCAGC+TGG | + | chr5_4:22062952-22062971 | Msa0844060:intron | 45.0% | |
| TGGCGCAAAAAAAGCCTTCA+AGG | + | chr5_4:22062972-22062991 | Msa0844060:CDS | 45.0% | |
| CGCAAAAAAAGCCTTCAAGG+TGG | + | chr5_4:22062975-22062994 | Msa0844060:CDS | 45.0% | |
| CCCAGTTCACACAGATATTC+AGG | + | chr5_4:22063001-22063020 | Msa0844060:CDS | 45.0% | |
| TTTCGCCTACAGGGTTTCAA+AGG | + | chr5_4:22063198-22063217 | Msa0844060:intron | 45.0% | |
| !! | CAATGCCTTTGAAACCCTGT+AGG | - | chr5_4:22063206-22063225 | None:intergenic | 45.0% |
| ! | CTACAGGGTTTCAAAGGCAT+TGG | + | chr5_4:22063204-22063223 | Msa0844060:intron | 45.0% |
| TACATGGCAGAAACCTATGC+AGG | + | chr5_4:22063234-22063253 | Msa0844060:CDS | 45.0% | |
| GGAACAGTGAAGGAAGACTA+GGG | - | chr5_4:22063477-22063496 | None:intergenic | 45.0% | |
| AGGAACAGTGAAGGAAGACT+AGG | - | chr5_4:22063478-22063497 | None:intergenic | 45.0% | |
| GACTCAGAAAGGAACAGTGA+AGG | - | chr5_4:22063487-22063506 | None:intergenic | 45.0% | |
| AGAGAGACTGAGACTCAGAA+AGG | - | chr5_4:22063498-22063517 | None:intergenic | 45.0% | |
| CGAACCCGAAATTCAGAAAC+AGG | + | chr5_4:22063623-22063642 | Msa0844060:intron | 45.0% | |
| ATGCCAAGACACCATGTCAA+AGG | + | chr5_4:22063737-22063756 | Msa0844060:intron | 45.0% | |
| CTTCCTTTGACATGGTGTCT+TGG | - | chr5_4:22063743-22063762 | None:intergenic | 45.0% | |
| ATACGGAAGTAAGGGAACTC+TGG | - | chr5_4:22063768-22063787 | None:intergenic | 45.0% | |
| GATATGGGGATACGGAAGTA+AGG | - | chr5_4:22063777-22063796 | None:intergenic | 45.0% | |
| AGAGCAGACTCTATCAAAGG+AGG | - | chr5_4:22064063-22064082 | None:intergenic | 45.0% | |
| CAATCCTGTGACCTTCACAA+GGG | + | chr5_4:22064118-22064137 | Msa0844060:intron | 45.0% | |
| AATCCTGTGACCTTCACAAG+GGG | + | chr5_4:22064119-22064138 | Msa0844060:intron | 45.0% | |
| TAGAAAACTCGTGTCTGGCA+GGG | + | chr5_4:22064167-22064186 | Msa0844060:intron | 45.0% | |
| CACTTGTGGAATTGTCAGAG+AGG | - | chr5_4:22064226-22064245 | None:intergenic | 45.0% | |
| TTGCACAAGGGATACACTTG+TGG | - | chr5_4:22064240-22064259 | None:intergenic | 45.0% | |
| AGATCAGTGGGATTGCACAA+GGG | - | chr5_4:22064252-22064271 | None:intergenic | 45.0% | |
| TAGATCAGTGGGATTGCACA+AGG | - | chr5_4:22064253-22064272 | None:intergenic | 45.0% | |
| TTGTGCAATCCCACTGATCT+AGG | + | chr5_4:22064252-22064271 | Msa0844060:intron | 45.0% | |
| GCATATCTTACCACCAAGGA+AGG | + | chr5_4:22064330-22064349 | Msa0844060:intron | 45.0% | |
| ! | TTTTTCATGCCCTTCCTTGG+TGG | - | chr5_4:22064343-22064362 | None:intergenic | 45.0% |
| TGTCTAGCTGAGAAGGATAG+AGG | - | chr5_4:22064547-22064566 | None:intergenic | 45.0% | |
| GAGTGGGTAAGCTACTTAGT+TGG | - | chr5_4:22064598-22064617 | None:intergenic | 45.0% | |
| TTTCCTTGTCATGCTTCACC+CGG | + | chr5_4:22064669-22064688 | Msa0844060:intron | 45.0% | |
| CAAAGAAAGGTAAGAGACCC+GGG | - | chr5_4:22064690-22064709 | None:intergenic | 45.0% | |
| !! | AATGGGCTAATTAAGGGTGG+AGG | - | chr5_4:22064796-22064815 | None:intergenic | 45.0% |
| !! | GTGAATGGGCTAATTAAGGG+TGG | - | chr5_4:22064799-22064818 | None:intergenic | 45.0% |
| !! | GTGGGTGAATGGGCTAATTA+AGG | - | chr5_4:22064803-22064822 | None:intergenic | 45.0% |
| CTGGATTGCAGAGTATACTG+TGG | - | chr5_4:22065071-22065090 | None:intergenic | 45.0% | |
| ! | AAGGGTGCAAAGATTCTAGG+TGG | + | chr5_4:22065262-22065281 | Msa0844060:intron | 45.0% |
| TGCAAAGATTCTAGGTGGCT+TGG | + | chr5_4:22065267-22065286 | Msa0844060:intron | 45.0% | |
| CAATACCAAACTACTCCCTC+CGG | + | chr5_4:22065353-22065372 | Msa0844060:intron | 45.0% | |
| ! | GAGCAAAGTAACCCCCATTT+TGG | - | chr5_4:22065544-22065563 | None:intergenic | 45.0% |
| TGCGACACAACATGTACTCA+TGG | + | chr5_4:22065564-22065583 | Msa0844060:intron | 45.0% | |
| AGCACCAAACTCAATAGACG+AGG | - | chr5_4:22065599-22065618 | None:intergenic | 45.0% | |
| !!! | GTACCTTGTTTTCCCTGAAC+TGG | - | chr5_4:22065882-22065901 | None:intergenic | 45.0% |
| GGCCAGGGGAAAAAGAATTT+AGG | + | chr5_4:22066582-22066601 | Msa0844060:intron | 45.0% | |
| !! | ACTAAAAGAGTGTCGCTGGA+GGG | + | chr5_4:22066635-22066654 | Msa0844060:intron | 45.0% |
| !! | TTATTTAATTATTATTAGTT+TGG | - | chr5_4:22062113-22062132 | None:intergenic | 5.0% |
| !! | AATAATAATTAAATAAGTTA+AGG | + | chr5_4:22062117-22062136 | Msa0844060:intron | 5.0% |
| !! | ATAATAATTAAATAAGTTAA+GGG | + | chr5_4:22062118-22062137 | Msa0844060:intron | 5.0% |
| !!! | TTTTTATAATATATTTTTTG+TGG | + | chr5_4:22065981-22066000 | Msa0844060:intron | 5.0% |
| CTGCTTTCTGCAACCGTTGT+TGG | - | chr5_4:22061535-22061554 | None:intergenic | 50.0% | |
| AGAGCATAGAGCTATGGCGA+CGG | + | chr5_4:22061553-22061572 | Msa0844060:CDS | 50.0% | |
| ! | AGGAGGTTTTCTAACGTCGC+CGG | - | chr5_4:22061585-22061604 | None:intergenic | 50.0% |
| GTGAAATGTCGAGGAGCAAC+GGG | - | chr5_4:22061653-22061672 | None:intergenic | 50.0% | |
| TTGGATATCCTCATCGTCGC+CGG | + | chr5_4:22061704-22061723 | Msa0844060:CDS | 50.0% | |
| ! | GGGAAGTACAGTACCAACTC+CGG | - | chr5_4:22061726-22061745 | None:intergenic | 50.0% |
| TAGGTCACGCTCTCAAAACC+GGG | + | chr5_4:22061822-22061841 | Msa0844060:intron | 50.0% | |
| !! | ATCCTCCTCATTTTCGGGAC+CGG | - | chr5_4:22062440-22062459 | None:intergenic | 50.0% |
| GGAGGATCATTCTGTACAGG+TGG | + | chr5_4:22062453-22062472 | Msa0844060:intron | 50.0% | |
| GCCAGCTGAAGAAAGAGGAA+AGG | - | chr5_4:22062956-22062975 | None:intergenic | 50.0% | |
| TTTGCGCCAGCTGAAGAAAG+AGG | - | chr5_4:22062961-22062980 | None:intergenic | 50.0% | |
| !! | AGGCATTGGAGAAGCGTACA+TGG | + | chr5_4:22063218-22063237 | Msa0844060:CDS | 50.0% |
| AACCTATGCAGGCTTCAGAC+AGG | + | chr5_4:22063245-22063264 | Msa0844060:CDS | 50.0% | |
| TTAGTGGCATATGCACCCCA+TGG | + | chr5_4:22063321-22063340 | Msa0844060:intron | 50.0% | |
| CACCAATGCCTTGCCTATAG+CGG | - | chr5_4:22063347-22063366 | None:intergenic | 50.0% | |
| GGCCGCAATTATGAAAGCGA+TGG | - | chr5_4:22063389-22063408 | None:intergenic | 50.0% | |
| ACTGGGGGAGAAACAATGCA+AGG | + | chr5_4:22063562-22063581 | Msa0844060:intron | 50.0% | |
| !! | CTCTGGAGCTTCCTTTGACA+TGG | - | chr5_4:22063751-22063770 | None:intergenic | 50.0% |
| GCAATCCTGTGACCTTCACA+AGG | + | chr5_4:22064117-22064136 | Msa0844060:intron | 50.0% | |
| GGTGGTAGAAAACTCGTGTC+TGG | + | chr5_4:22064162-22064181 | Msa0844060:intron | 50.0% | |
| GTAGAAAACTCGTGTCTGGC+AGG | + | chr5_4:22064166-22064185 | Msa0844060:intron | 50.0% | |
| AGAAAACTCGTGTCTGGCAG+GGG | + | chr5_4:22064168-22064187 | Msa0844060:intron | 50.0% | |
| ATGGGAACGCCTAGATCAGT+GGG | - | chr5_4:22064264-22064283 | None:intergenic | 50.0% | |
| TATGGGAACGCCTAGATCAG+TGG | - | chr5_4:22064265-22064284 | None:intergenic | 50.0% | |
| GAGGAAGCTCACAGGAAGAA+AGG | - | chr5_4:22064528-22064547 | None:intergenic | 50.0% | |
| GAAGGATAGAGGAAGCTCAC+AGG | - | chr5_4:22064536-22064555 | None:intergenic | 50.0% | |
| TTCCTTGTCATGCTTCACCC+GGG | + | chr5_4:22064670-22064689 | Msa0844060:intron | 50.0% | |
| ! | AACAGGTTGAAGGTGAGCAG+TGG | + | chr5_4:22064724-22064743 | Msa0844060:intron | 50.0% |
| ! | AGGATTTGGGGTGGGTGAAT+GGG | - | chr5_4:22064813-22064832 | None:intergenic | 50.0% |
| ! | AAGGATTTGGGGTGGGTGAA+TGG | - | chr5_4:22064814-22064833 | None:intergenic | 50.0% |
| TAGGTTAAGGGTGGGGCTAA+AGG | + | chr5_4:22065243-22065262 | Msa0844060:intron | 50.0% | |
| AGGTTAAGGGTGGGGCTAAA+GGG | + | chr5_4:22065244-22065263 | Msa0844060:intron | 50.0% | |
| TTTCTCGCAACTACTCCCTC+CGG | - | chr5_4:22065506-22065525 | None:intergenic | 50.0% | |
| ! | GTCTAACGGATCACACTCCT+TGG | - | chr5_4:22065857-22065876 | None:intergenic | 50.0% |
| ATCCGTTAGACAGCCAGTTC+AGG | + | chr5_4:22065866-22065885 | Msa0844060:intron | 50.0% | |
| TCCGTTAGACAGCCAGTTCA+GGG | + | chr5_4:22065867-22065886 | Msa0844060:intron | 50.0% | |
| TCCCTGAACTGGCTGTCTAA+CGG | - | chr5_4:22065871-22065890 | None:intergenic | 50.0% | |
| CAGCCAGTTCAGGGAAAACA+AGG | + | chr5_4:22065876-22065895 | Msa0844060:intron | 50.0% | |
| !! | TGCTTTGATTTTGCAGGGCC+AGG | + | chr5_4:22066566-22066585 | Msa0844060:intron | 50.0% |
| !! | GCTTTGATTTTGCAGGGCCA+GGG | + | chr5_4:22066567-22066586 | Msa0844060:intron | 50.0% |
| !! | CTTTGATTTTGCAGGGCCAG+GGG | + | chr5_4:22066568-22066587 | Msa0844060:intron | 50.0% |
| AGGAGTTGCTGTCATTGGCA+AGG | + | chr5_4:22066602-22066621 | Msa0844060:intron | 50.0% | |
| !! | GACTAAAAGAGTGTCGCTGG+AGG | + | chr5_4:22066634-22066653 | Msa0844060:intron | 50.0% |
| TACCGGTCCCGAAAATGAGG+AGG | + | chr5_4:22062435-22062454 | Msa0844060:CDS | 55.0% | |
| ! | GACCTGTCTGAAGCCTGCAT+AGG | - | chr5_4:22063250-22063269 | None:intergenic | 55.0% |
| AGTCCCCTTGTGAAGGTCAC+AGG | - | chr5_4:22064125-22064144 | None:intergenic | 55.0% | |
| AGACTCGAGTCCCCTTGTGA+AGG | - | chr5_4:22064132-22064151 | None:intergenic | 55.0% | |
| GACTCGAGTCTGACGACTCT+AGG | + | chr5_4:22064141-22064160 | Msa0844060:intron | 55.0% | |
| TCGAGTCTGACGACTCTAGG+TGG | + | chr5_4:22064144-22064163 | Msa0844060:intron | 55.0% | |
| !! | TAGTCCGACTTGGTGCTCGT+CGG | + | chr5_4:22064199-22064218 | Msa0844060:intron | 55.0% |
| GGCTAATTAAGGGTGGAGGC+CGG | - | chr5_4:22064792-22064811 | None:intergenic | 55.0% | |
| AAGGACCGGAGGGAGTAGTT+TGG | - | chr5_4:22065361-22065380 | None:intergenic | 55.0% | |
| !! | CTACTCGATGACGGAGCTGT+TGG | - | chr5_4:22066706-22066725 | None:intergenic | 55.0% |
| GCATAGAGCTATGGCGACGG+TGG | + | chr5_4:22061556-22061575 | Msa0844060:CDS | 60.0% | |
| GCTATGGCGACGGTGGTTTC+CGG | + | chr5_4:22061563-22061582 | Msa0844060:CDS | 60.0% | |
| TCGAGGAGCAACGGGATCGA+GGG | - | chr5_4:22061645-22061664 | None:intergenic | 60.0% | |
| ATCCTCATCGTCGCCGGAGT+TGG | + | chr5_4:22061710-22061729 | Msa0844060:CDS | 60.0% | |
| TACCAACTCCGGCGACGATG+AGG | - | chr5_4:22061715-22061734 | None:intergenic | 60.0% | |
| ! | GAACTGGGGCACCACCTTGA+AGG | - | chr5_4:22062989-22063008 | None:intergenic | 60.0% |
| ATGCACCCCATGGCCGCTAT+AGG | + | chr5_4:22063331-22063350 | Msa0844060:intron | 60.0% | |
| CCTTGCCTATAGCGGCCATG+GGG | - | chr5_4:22063339-22063358 | None:intergenic | 60.0% | |
| GCCTTGCCTATAGCGGCCAT+GGG | - | chr5_4:22063340-22063359 | None:intergenic | 60.0% | |
| TGCCTTGCCTATAGCGGCCA+TGG | - | chr5_4:22063341-22063360 | None:intergenic | 60.0% | |
| GGCCGCTATAGGCAAGGCAT+TGG | + | chr5_4:22063342-22063361 | Msa0844060:intron | 60.0% | |
| AGGTCCGACGAGCACCAAGT+CGG | - | chr5_4:22064206-22064225 | None:intergenic | 60.0% | |
| GACCCGGGTGAAGCATGACA+AGG | - | chr5_4:22064675-22064694 | None:intergenic | 60.0% | |
| !! | CTCGATGACGGAGCTGTTGG+CGG | - | chr5_4:22066703-22066722 | None:intergenic | 60.0% |
| AGGAGCAACGGGATCGAGGG+CGG | - | chr5_4:22061642-22061661 | None:intergenic | 65.0% | |
| GTCGAGGAGCAACGGGATCG+AGG | - | chr5_4:22061646-22061665 | None:intergenic | 65.0% | |
| CCCCATGGCCGCTATAGGCA+AGG | + | chr5_4:22063336-22063355 | Msa0844060:intron | 65.0% | |
| ! | CTCGTGTCTGGCAGGGGCAT+CGG | + | chr5_4:22064174-22064193 | Msa0844060:intron | 65.0% |
| !! | TCGTGTCTGGCAGGGGCATC+GGG | + | chr5_4:22064175-22064194 | Msa0844060:intron | 65.0% |
| ! | GGCATCGGGGTAGTCCGACT+TGG | + | chr5_4:22064189-22064208 | Msa0844060:intron | 65.0% |
| AGCAACGGGATCGAGGGCGG+TGG | - | chr5_4:22061639-22061658 | None:intergenic | 70.0% | |
| !! | CGTGTCTGGCAGGGGCATCG+GGG | + | chr5_4:22064176-22064195 | Msa0844060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 22061476 | 22066945 | 22061476 | ID=Msa0844060;Name=Msa0844060 |
| chr5_4 | mRNA | 22061476 | 22066945 | 22061476 | ID=Msa0844060-mRNA-1;Parent=Msa0844060;Name=Msa0844060-mRNA-1;_AED=0.29;_eAED=0.36;_QI=42|0.8|0.83|1|0.8|0.66|6|0|180 |
| chr5_4 | exon | 22061476 | 22061731 | 22061476 | ID=Msa0844060-mRNA-1:exon:9111;Parent=Msa0844060-mRNA-1 |
| chr5_4 | exon | 22061825 | 22061874 | 22061825 | ID=Msa0844060-mRNA-1:exon:9112;Parent=Msa0844060-mRNA-1 |
| chr5_4 | exon | 22062403 | 22062471 | 22062403 | ID=Msa0844060-mRNA-1:exon:9113;Parent=Msa0844060-mRNA-1 |
| chr5_4 | exon | 22062971 | 22063066 | 22062971 | ID=Msa0844060-mRNA-1:exon:9114;Parent=Msa0844060-mRNA-1 |
| chr5_4 | exon | 22063210 | 22063266 | 22063210 | ID=Msa0844060-mRNA-1:exon:9115;Parent=Msa0844060-mRNA-1 |
| chr5_4 | exon | 22066889 | 22066945 | 22066889 | ID=Msa0844060-mRNA-1:exon:9116;Parent=Msa0844060-mRNA-1 |
| chr5_4 | five_prime_UTR | 22061476 | 22061517 | 22061476 | ID=Msa0844060-mRNA-1:five_prime_utr;Parent=Msa0844060-mRNA-1 |
| chr5_4 | CDS | 22061518 | 22061731 | 22061518 | ID=Msa0844060-mRNA-1:cds;Parent=Msa0844060-mRNA-1 |
| chr5_4 | CDS | 22061825 | 22061874 | 22061825 | ID=Msa0844060-mRNA-1:cds;Parent=Msa0844060-mRNA-1 |
| chr5_4 | CDS | 22062403 | 22062471 | 22062403 | ID=Msa0844060-mRNA-1:cds;Parent=Msa0844060-mRNA-1 |
| chr5_4 | CDS | 22062971 | 22063066 | 22062971 | ID=Msa0844060-mRNA-1:cds;Parent=Msa0844060-mRNA-1 |
| chr5_4 | CDS | 22063210 | 22063266 | 22063210 | ID=Msa0844060-mRNA-1:cds;Parent=Msa0844060-mRNA-1 |
| chr5_4 | CDS | 22066889 | 22066945 | 22066889 | ID=Msa0844060-mRNA-1:cds;Parent=Msa0844060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
