AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194480 MtrunA17_Chr2g0285181 98.529 204 3 0 1 204 1 204 1.59e-152 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194480 AT2G25950.1 81.773 203 37 0 1 203 1 203 9.80e-130 363
Msa0194480 AT2G25950.2 82.723 191 33 0 1 191 1 191 6.49e-123 345

Find 61 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAGTAGCTTCGCCTTTA+AGG 0.060495 2_1:+10586077 None:intergenic
TTGCACTTTCCTGATAATTT+TGG 0.141609 2_1:-10586130 Msa0194480:CDS
GTACACTATATTGGCCTTAA+AGG 0.210471 2_1:-10586091 Msa0194480:CDS
GTCGGGTGAAAATACATAAA+TGG 0.304827 2_1:-10585293 Msa0194480:exon
TTTAATGAAGGAATGGGATT+TGG 0.310224 2_1:-10589014 Msa0194480:intron
TATCATGCAATGAAATAATT+TGG 0.311299 2_1:-10585204 Msa0194480:three_prime_UTR
ACCATGATTGTTCTTCTGAT+TGG 0.344049 2_1:-10591504 Msa0194480:CDS
TCCATCAGCTCCACCAACTA+TGG 0.358505 2_1:+10589911 None:intergenic
GCTCGGTGGTGCAGTGAAAA+TGG 0.368947 2_1:-10591554 Msa0194480:exon
ACTACCAAAGTACACTATAT+TGG 0.369869 2_1:-10586100 Msa0194480:CDS
GTGTCACCTCCAAAATTATC+AGG 0.375063 2_1:+10586121 None:intergenic
ACAAAGCATGCAAGCCATTC+AGG 0.395846 2_1:-10589115 Msa0194480:intron
ATGACAATGATTACCTTGTC+TGG 0.446088 2_1:+10588963 None:intergenic
AACAACTTACGCTCTCATCT+TGG 0.454085 2_1:+10589878 None:intergenic
TGAGAATTTGCAAGGAGTAT+TGG 0.456970 2_1:-10588990 Msa0194480:CDS
ATTAGGTATTCTAAATTTCA+AGG 0.477316 2_1:-10586169 Msa0194480:intron
TCCATAGTTGGTGGAGCTGA+TGG 0.477827 2_1:-10589912 Msa0194480:CDS
GTGGAGGTCTTTCACATGTC+GGG 0.482074 2_1:-10585310 Msa0194480:CDS
TGGCTAGATACTTGTTGATC+TGG 0.483936 2_1:-10585146 Msa0194480:three_prime_UTR
CCTTAAAGGCGAAGCTACTC+AGG 0.490216 2_1:-10586077 Msa0194480:intron
TACTTGTGATCAGAAGGATT+CGG 0.503892 2_1:+10585937 None:intergenic
AAGGCCAATATAGTGTACTT+TGG 0.504360 2_1:+10586096 None:intergenic
CATAAGCTCGTAAACAATAG+TGG 0.504441 2_1:+10585960 None:intergenic
TACTGGATAACACTATCTCT+CGG 0.509014 2_1:-10585259 Msa0194480:three_prime_UTR
CAAACACATTGATCTCGAAA+AGG 0.510565 2_1:-10591473 Msa0194480:intron
CGGGCGTAAAAGAATACAGT+TGG 0.512511 2_1:-10585239 Msa0194480:three_prime_UTR
TATTCTAAATTTCAAGGTGT+GGG 0.516199 2_1:-10586163 Msa0194480:CDS
ATTAAGAGCATATCCATAGT+TGG 0.528832 2_1:-10589924 Msa0194480:CDS
ACCAATCAGAAGAACAATCA+TGG 0.531525 2_1:+10591503 None:intergenic
AGAAAGAAAATATACCTGAA+TGG 0.532458 2_1:+10589101 None:intergenic
AAAACTGATTTAACACTACC+AGG 0.544780 2_1:+10591355 None:intergenic
TTCAATTCAACAGGAACACT+TGG 0.545144 2_1:-10591219 Msa0194480:intron
ACACGTGCTGAAAGCGGTGG+AGG 0.548694 2_1:-10585326 Msa0194480:CDS
AGTACTTACTTGTGATCAGA+AGG 0.548789 2_1:+10585931 None:intergenic
TAAATATCTTTGTAGAACAA+TGG 0.559377 2_1:-10585071 Msa0194480:three_prime_UTR
GGTGGAGGTCTTTCACATGT+CGG 0.561265 2_1:-10585311 Msa0194480:CDS
TATGTAACTTACATCGACTC+CGG 0.563664 2_1:+10585179 None:intergenic
ACAACATAACATCGCTTGCT+CGG 0.567187 2_1:-10591571 Msa0194480:five_prime_UTR
ACTGGATAACACTATCTCTC+GGG 0.568514 2_1:-10585258 Msa0194480:three_prime_UTR
GTATTCTAAATTTCAAGGTG+TGG 0.569021 2_1:-10586164 Msa0194480:CDS
AATCATGGTCTTCACAGCTA+TGG 0.574162 2_1:+10591518 None:intergenic
TTACCTCAGAAGTATTCAAA+CGG 0.574517 2_1:+10591317 None:intergenic
GTATTCAAACGGTGTTCCCA+AGG 0.577925 2_1:+10591328 None:intergenic
ATGTAACTTACATCGACTCC+GGG 0.581518 2_1:+10585180 None:intergenic
GATTTGGCTGAGAATTTGCA+AGG 0.582316 2_1:-10588998 Msa0194480:CDS
GCTTTGAATGAAGCAACTCC+TGG 0.583481 2_1:-10591373 Msa0194480:CDS
ACTTACGCTCTCATCTTGGA+AGG 0.585832 2_1:+10589882 None:intergenic
GAACACTTGGAAAGCAATGA+GGG 0.588803 2_1:-10591206 Msa0194480:CDS
GCAATGAAATAATTTGGTCC+CGG 0.590148 2_1:-10585198 Msa0194480:three_prime_UTR
TACAGGACACGTGCTGAAAG+CGG 0.598434 2_1:-10585332 Msa0194480:intron
ATCAGGTTCATCAATAGAGA+TGG 0.601933 2_1:-10589156 Msa0194480:intron
GGAACACTTGGAAAGCAATG+AGG 0.612240 2_1:-10591207 Msa0194480:CDS
ACACCGTTTGAATACTTCTG+AGG 0.613448 2_1:-10591320 Msa0194480:intron
GGAATGAATACAATTAACTC+AGG 0.615947 2_1:+10591179 None:intergenic
AAGAGCATATCCATAGTTGG+TGG 0.623635 2_1:-10589921 Msa0194480:CDS
TTTGTGCGATAGATTCACTT+CGG 0.624035 2_1:-10589955 Msa0194480:intron
CTTACGCTCTCATCTTGGAA+GGG 0.631404 2_1:+10589883 None:intergenic
AAGTTACATATGAAATTCTG+TGG 0.643926 2_1:-10585166 Msa0194480:three_prime_UTR
ACATAACATCGCTTGCTCGG+TGG 0.665333 2_1:-10591568 Msa0194480:five_prime_UTR
GAGTATTGGAATACCAGACA+AGG 0.668076 2_1:-10588976 Msa0194480:intron
AGGACACGTGCTGAAAGCGG+TGG 0.670321 2_1:-10585329 Msa0194480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAAAATTAAAGAAAA+GGG + chr2_1:10585196-10585215 None:intergenic 10.0%
!! TATTCATAAAATTAAAGAAA+AGG + chr2_1:10585197-10585216 None:intergenic 10.0%
!! AATTAATTTATATACATTAG+AGG + chr2_1:10585854-10585873 None:intergenic 10.0%
!!! AATTTATCTTTAAAATTTAC+CGG - chr2_1:10586012-10586031 Msa0194480:intron 10.0%
!!! GATTTATTTATTTTTAATGA+AGG - chr2_1:10587601-10587620 Msa0194480:intron 10.0%
!! ATATAAAATATCATAGATAA+AGG - chr2_1:10588601-10588620 Msa0194480:intron 10.0%
!!! TTTTTTATTTTATAGTTTTG+TGG + chr2_1:10588652-10588671 None:intergenic 10.0%
!! TATAAAATAAAAAACAATCA+AGG - chr2_1:10588658-10588677 Msa0194480:intron 10.0%
!!! ATTTTAAATCATATAAACAA+AGG - chr2_1:10589058-10589077 Msa0194480:intron 10.0%
!!! TCCATTTTTATTTATAACAT+TGG - chr2_1:10586616-10586635 Msa0194480:intron 15.0%
!! ACCAATGTTATAAATAAAAA+TGG + chr2_1:10586620-10586639 None:intergenic 15.0%
!!! ATTTATTTTTAATGAAGGAA+TGG - chr2_1:10587606-10587625 Msa0194480:intron 15.0%
!!! TTTATTTTTAATGAAGGAAT+GGG - chr2_1:10587607-10587626 Msa0194480:intron 15.0%
!! GAATAACTAAAATGATAAAT+TGG + chr2_1:10587693-10587712 None:intergenic 15.0%
!! TAAAAAAAATCCAAAACAAA+CGG + chr2_1:10587881-10587900 None:intergenic 15.0%
!!! TTTTTTGTTTTAACTTTTTC+TGG + chr2_1:10589019-10589038 None:intergenic 15.0%
!! AAAATTACAAAACAACAATA+TGG - chr2_1:10589104-10589123 Msa0194480:intron 15.0%
!!! ATTTAGAATACCTAATAAAA+AGG + chr2_1:10590454-10590473 None:intergenic 15.0%
!! AAAATTAAAGAAAAGGGAAA+GGG + chr2_1:10585190-10585209 None:intergenic 20.0%
!! TAAAATTAAAGAAAAGGGAA+AGG + chr2_1:10585191-10585210 None:intergenic 20.0%
!! TGAATAATAGAAGTAACTTA+CGG + chr2_1:10585472-10585491 None:intergenic 20.0%
!! TAAGTAGTTAAATTACATGT+GGG + chr2_1:10585804-10585823 None:intergenic 20.0%
!! ATAAGTAGTTAAATTACATG+TGG + chr2_1:10585805-10585824 None:intergenic 20.0%
!!! TTTTTATACAAATTGTCTGA+TGG - chr2_1:10585952-10585971 Msa0194480:CDS 20.0%
!! GTGACAATAATTGTAAATTT+GGG + chr2_1:10586592-10586611 None:intergenic 20.0%
!! TGTGACAATAATTGTAAATT+TGG + chr2_1:10586593-10586612 None:intergenic 20.0%
!!! AATAACGTCCATTTTAAATT+TGG + chr2_1:10586912-10586931 None:intergenic 20.0%
!!! ATCAATTTGAGTTATTCATA+TGG - chr2_1:10587035-10587054 Msa0194480:intron 20.0%
!!! ATTTTCTTTCTAATTTTCCA+AGG - chr2_1:10587538-10587557 Msa0194480:intron 20.0%
!! AAAAAAAATCCAAAACAAAC+GGG + chr2_1:10587880-10587899 None:intergenic 20.0%
!!! AACTTCAATAGATTTCTTTT+AGG + chr2_1:10588163-10588182 None:intergenic 20.0%
!!! ACTACTTATATTCTATTTTC+TGG + chr2_1:10588351-10588370 None:intergenic 20.0%
!!! TTTGATTTCAATGATAAATG+AGG + chr2_1:10588434-10588453 None:intergenic 20.0%
!!! TCTATGATATTTTATATAGC+TGG + chr2_1:10588598-10588617 None:intergenic 20.0%
!! CATATATATATCTTTCTTTC+TGG + chr2_1:10588782-10588801 None:intergenic 20.0%
!!! ATGATTTAAAATTACCTTAC+TGG + chr2_1:10589050-10589069 None:intergenic 20.0%
!!! CTTTGTTGTCTATAATATTT+TGG + chr2_1:10589214-10589233 None:intergenic 20.0%
!! AGGTCAAATTTAATTCATAA+CGG - chr2_1:10589895-10589914 Msa0194480:CDS 20.0%
!! AGGTCAAATTTAATTCATAA+CGG - chr2_1:10589895-10589914 Msa0194480:CDS 20.0%
!! AAACATACAATAATTTAACG+TGG - chr2_1:10590175-10590194 Msa0194480:intron 20.0%
!! TTAGATATAAGTATGATATG+AGG - chr2_1:10590346-10590365 Msa0194480:intron 20.0%
!! ATTAGGTATTCTAAATTTCA+AGG - chr2_1:10590458-10590477 Msa0194480:intron 20.0%
!!! ATCTTTTTACTGTAAAATTC+AGG - chr2_1:10590575-10590594 Msa0194480:intron 20.0%
!!! TCTTTTTACTGTAAAATTCA+GGG - chr2_1:10590576-10590595 Msa0194480:intron 20.0%
!! AAAAAGAAAAAGCTAAGATT+AGG + chr2_1:10590829-10590848 None:intergenic 20.0%
!! TCAAAATTTAAATGCTTTCT+TGG - chr2_1:10591050-10591069 Msa0194480:intron 20.0%
!!! AAATGGTTTTATTTTGTTAC+TGG - chr2_1:10591351-10591370 Msa0194480:CDS 20.0%
!! TATCATGCAATGAAATAATT+TGG - chr2_1:10591423-10591442 Msa0194480:intron 20.0%
!! TAAATATCTTTGTAGAACAA+TGG - chr2_1:10591556-10591575 Msa0194480:exon 20.0%
! TTCTTCTTCTTCTTCAATTT+GGG + chr2_1:10585023-10585042 None:intergenic 25.0%
!! TTAAATCAGTTTTCAAACCT+TGG - chr2_1:10585282-10585301 Msa0194480:three_prime_UTR 25.0%
!! TAAATCAGTTTTCAAACCTT+GGG - chr2_1:10585283-10585302 Msa0194480:three_prime_UTR 25.0%
! GATGATAAGTTATCAAAACA+AGG + chr2_1:10585555-10585574 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAG+TGG + chr2_1:10585769-10585788 None:intergenic 25.0%
! CAGTTCAATATATTAGAGAT+GGG + chr2_1:10585904-10585923 None:intergenic 25.0%
! ACAGTTCAATATATTAGAGA+TGG + chr2_1:10585905-10585924 None:intergenic 25.0%
! CTCTAATATATTGAACTGTT+TGG - chr2_1:10585906-10585925 Msa0194480:intron 25.0%
!! GTTTCTCTAATAGTTTTTCT+AGG + chr2_1:10586139-10586158 None:intergenic 25.0%
!! TGCTTCTTTTCATATTTGTA+TGG - chr2_1:10586541-10586560 Msa0194480:intron 25.0%
!!! TGAAGAAGCTTTATTGTATT+TGG - chr2_1:10586779-10586798 Msa0194480:intron 25.0%
!! CTTAAAACGGAACTATTTTA+AGG + chr2_1:10586843-10586862 None:intergenic 25.0%
!!! AAATAGTTCCGTTTTAAGAT+CGG - chr2_1:10586845-10586864 Msa0194480:intron 25.0%
! GACATCAACCAAATTTAAAA+TGG - chr2_1:10586901-10586920 Msa0194480:intron 25.0%
!! ATAACTCAAATTGATTTCAC+AGG + chr2_1:10587030-10587049 None:intergenic 25.0%
! ATAAGAACTCAATCATACAA+AGG + chr2_1:10587150-10587169 None:intergenic 25.0%
! ATAAAAGAACAGGAAAACAA+AGG + chr2_1:10587263-10587282 None:intergenic 25.0%
!! TGTTCTTTTATAAATGTACC+CGG - chr2_1:10587272-10587291 Msa0194480:intron 25.0%
! AAAAGTCAGTAATAGAAAAG+TGG + chr2_1:10587344-10587363 None:intergenic 25.0%
!!! ACTTTTCTATTACTGACTTT+TGG - chr2_1:10587343-10587362 Msa0194480:intron 25.0%
!!! TATTACTGACTTTTGGATAA+AGG - chr2_1:10587350-10587369 Msa0194480:intron 25.0%
! TCAAATATTCTCTACACAAA+AGG - chr2_1:10587430-10587449 Msa0194480:intron 25.0%
! AGAAAGAAAATATACCTGAA+TGG + chr2_1:10587529-10587548 None:intergenic 25.0%
! ATGAATACTTCACAATATGA+TGG + chr2_1:10587715-10587734 None:intergenic 25.0%
!!! AAATGACTTTTTTAGCAAGA+AGG + chr2_1:10587978-10587997 None:intergenic 25.0%
!!! TTAATTGGCTTTTCATTTTG+CGG + chr2_1:10588005-10588024 None:intergenic 25.0%
! CTTTGCTAATCTACTTTAAT+TGG + chr2_1:10588020-10588039 None:intergenic 25.0%
! TGTTAAAGAGGACATATATA+TGG + chr2_1:10588277-10588296 None:intergenic 25.0%
!! GTAGAATATTTTTCTCATCA+TGG - chr2_1:10588369-10588388 Msa0194480:intron 25.0%
!! ATTTGAGATCTCAATAGATT+GGG + chr2_1:10588753-10588772 None:intergenic 25.0%
! GATATATATATGAGCAACAA+AGG - chr2_1:10588790-10588809 Msa0194480:intron 25.0%
! GTTGCTTGAATTTAACAATA+CGG - chr2_1:10588876-10588895 Msa0194480:intron 25.0%
! ATTACAAAACAACAATATGG+TGG - chr2_1:10589107-10589126 Msa0194480:intron 25.0%
! AAGAAATTAAGCAAGAAACA+TGG - chr2_1:10589231-10589250 Msa0194480:intron 25.0%
!!! ACCCAAAAAGTATTTAAAAG+CGG + chr2_1:10589300-10589319 None:intergenic 25.0%
!!! TTTAAATACTTTTTGGGTAG+AGG - chr2_1:10589302-10589321 Msa0194480:intron 25.0%
!!! TTAAATACTTTTTGGGTAGA+GGG - chr2_1:10589303-10589322 Msa0194480:intron 25.0%
!! AAAAGCTTCTAAATTTGTTC+AGG + chr2_1:10589506-10589525 None:intergenic 25.0%
!!! ATTTAGAAGCTTTTGATTGT+CGG - chr2_1:10589512-10589531 Msa0194480:intron 25.0%
!! ATGCATCAATCCTTTTTATT+AGG - chr2_1:10590441-10590460 Msa0194480:intron 25.0%
! TATTCTAAATTTCAAGGTGT+GGG - chr2_1:10590464-10590483 Msa0194480:intron 25.0%
!! ATTTTGTAGAGACAAAAAAG+AGG + chr2_1:10591186-10591205 None:intergenic 25.0%
! TTAGGAAAGAAAAACAATCA+TGG + chr2_1:10591258-10591277 None:intergenic 25.0%
! AAAAGAATGCATTAGTGATT+AGG + chr2_1:10591276-10591295 None:intergenic 25.0%
! AAGTTACATATGAAATTCTG+TGG - chr2_1:10591461-10591480 Msa0194480:intron 25.0%
CTTCTTCTTCTTCTTCAATT+TGG + chr2_1:10585024-10585043 None:intergenic 30.0%
TTTGTCGAAATTTCTGTTTC+AGG - chr2_1:10585226-10585245 Msa0194480:three_prime_UTR 30.0%
! AAAACTGATTTAACACTACC+AGG + chr2_1:10585275-10585294 None:intergenic 30.0%
!! TTACCTCAGAAGTATTCAAA+CGG + chr2_1:10585313-10585332 None:intergenic 30.0%
CATGAATTGTACACTAATCA+TGG - chr2_1:10585384-10585403 Msa0194480:intron 30.0%
GGAATGAATACAATTAACTC+AGG + chr2_1:10585451-10585470 None:intergenic 30.0%
!!! GGCATTAGTGTTTTAAAAGT+AGG + chr2_1:10585534-10585553 None:intergenic 30.0%
!! TAACCCATTTCTAGTACTAT+AGG - chr2_1:10585594-10585613 Msa0194480:intron 30.0%
TCACCTATAGTACTAGAAAT+GGG + chr2_1:10585600-10585619 None:intergenic 30.0%
TTCACCTATAGTACTAGAAA+TGG + chr2_1:10585601-10585620 None:intergenic 30.0%
ATAAGCTGAAACACAACTTA+TGG - chr2_1:10585689-10585708 Msa0194480:intron 30.0%
AAGTACTTGTGAAACTGTTT+GGG + chr2_1:10585743-10585762 None:intergenic 30.0%
TAAGTACTTGTGAAACTGTT+TGG + chr2_1:10585744-10585763 None:intergenic 30.0%
! ACCATCTTTTCTACTAATGA+AGG + chr2_1:10586038-10586057 None:intergenic 30.0%
TAGAAAAGATGGTAGAAACT+AGG - chr2_1:10586045-10586064 Msa0194480:intron 30.0%
ATGAAATAAATGTGTGTGAG+TGG - chr2_1:10586491-10586510 Msa0194480:intron 30.0%
!! CTTTGCTTTTGAATATGCAT+TGG - chr2_1:10586514-10586533 Msa0194480:intron 30.0%
! ATTAAGAGCATATCCATAGT+TGG - chr2_1:10586703-10586722 Msa0194480:intron 30.0%
!! AGAAGCTTTATTGTATTTGG+TGG - chr2_1:10586782-10586801 Msa0194480:intron 30.0%
!! GAAGCTTTATTGTATTTGGT+GGG - chr2_1:10586783-10586802 Msa0194480:intron 30.0%
! GAATGATAAGTGTCATTGAA+TGG + chr2_1:10586962-10586981 None:intergenic 30.0%
TGACACTTATCATTCATGAT+TGG - chr2_1:10586967-10586986 Msa0194480:intron 30.0%
AAGGGATATGATGATAAAGA+AGG + chr2_1:10587084-10587103 None:intergenic 30.0%
TGATTGAGTTCTTATATCCT+TGG - chr2_1:10587155-10587174 Msa0194480:intron 30.0%
GGGTACATTTATAAAAGAAC+AGG + chr2_1:10587273-10587292 None:intergenic 30.0%
! GTTCTTTTATAAATGTACCC+GGG - chr2_1:10587273-10587292 Msa0194480:intron 30.0%
TGAGAAATTCATCTTGAATC+AGG - chr2_1:10587454-10587473 Msa0194480:intron 30.0%
CGATTTGTCAATTAATTCCT+TGG + chr2_1:10587558-10587577 None:intergenic 30.0%
ATCAGTATTATACAAAGCTG+TGG + chr2_1:10587584-10587603 None:intergenic 30.0%
TTTAATGAAGGAATGGGATT+TGG - chr2_1:10587613-10587632 Msa0194480:intron 30.0%
GATTAGCAAAGTTTAACAGA+AGG - chr2_1:10588029-10588048 Msa0194480:intron 30.0%
! AGCATTGTTGTTAGTTATAG+TGG - chr2_1:10588060-10588079 Msa0194480:intron 30.0%
!! CTTCTTCTGAATTATTTTGC+TGG + chr2_1:10588213-10588232 None:intergenic 30.0%
ATATATGTCCTCTTTAACAC+TGG - chr2_1:10588278-10588297 Msa0194480:intron 30.0%
!! CTTTGTTATAGAGCATTGAA+GGG + chr2_1:10588317-10588336 None:intergenic 30.0%
!! ACTTTGTTATAGAGCATTGA+AGG + chr2_1:10588318-10588337 None:intergenic 30.0%
!! ATTCTATTTTCTGGCATAAC+TGG + chr2_1:10588342-10588361 None:intergenic 30.0%
! TTTTCTCATCATGGTCAAAT+AGG - chr2_1:10588378-10588397 Msa0194480:intron 30.0%
TTTCTCATCATGGTCAAATA+GGG - chr2_1:10588379-10588398 Msa0194480:intron 30.0%
! GTTGTCATGATGTTATTTAC+CGG - chr2_1:10588465-10588484 Msa0194480:intron 30.0%
! GATTTGAGATCTCAATAGAT+TGG + chr2_1:10588754-10588773 None:intergenic 30.0%
!!! ATCCTTATTTTTGCTTCCTA+TGG + chr2_1:10588824-10588843 None:intergenic 30.0%
! CCAGAAAAATGAGTTGAATA+GGG + chr2_1:10588919-10588938 None:intergenic 30.0%
! TCCAGAAAAATGAGTTGAAT+AGG + chr2_1:10588920-10588939 None:intergenic 30.0%
AAAAAATCCACAAACCAGTA+AGG - chr2_1:10589033-10589052 Msa0194480:intron 30.0%
!! AAAATTACCTTACTGGTTTG+TGG + chr2_1:10589043-10589062 None:intergenic 30.0%
!!! TGCCGCTTTTAAATACTTTT+TGG - chr2_1:10589295-10589314 Msa0194480:intron 30.0%
!!! GCCGCTTTTAAATACTTTTT+GGG - chr2_1:10589296-10589315 Msa0194480:intron 30.0%
ATTGTGCAACAAATGTGTTT+CGG + chr2_1:10589359-10589378 None:intergenic 30.0%
ATTAACACAAATATCAGAGC+TGG + chr2_1:10589402-10589421 None:intergenic 30.0%
TCATTTCAACCTCTATACAA+AGG - chr2_1:10589472-10589491 Msa0194480:intron 30.0%
! CTTAATCTTTTTATCGCGAT+CGG + chr2_1:10589847-10589866 None:intergenic 30.0%
TACAATAATTTAACGTGGCA+TGG - chr2_1:10590180-10590199 Msa0194480:intron 30.0%
GCCTAAAAATTCTAGGTTTA+GGG - chr2_1:10590292-10590311 Msa0194480:intron 30.0%
! ACCCTAAACCTAGAATTTTT+AGG + chr2_1:10590296-10590315 None:intergenic 30.0%
GTATTCTAAATTTCAAGGTG+TGG - chr2_1:10590463-10590482 Msa0194480:intron 30.0%
! TTGCACTTTCCTGATAATTT+TGG - chr2_1:10590497-10590516 Msa0194480:intron 30.0%
ACTACCAAAGTACACTATAT+TGG - chr2_1:10590527-10590546 Msa0194480:intron 30.0%
ATTTAGATGAATGTCATGGA+AGG + chr2_1:10590762-10590781 None:intergenic 30.0%
CATCATTTAGATGAATGTCA+TGG + chr2_1:10590766-10590785 None:intergenic 30.0%
CATGACATTCATCTAAATGA+TGG - chr2_1:10590764-10590783 Msa0194480:intron 30.0%
ATCGCAATGTACAAAAACAT+GGG + chr2_1:10591209-10591228 None:intergenic 30.0%
! TTTTGTACATTGCGATGATT+CGG - chr2_1:10591213-10591232 Msa0194480:intron 30.0%
! TCACTAATGCATTCTTTTAC+AGG - chr2_1:10591278-10591297 Msa0194480:intron 30.0%
ACCATGATTGTTCTTCTGAT+TGG - chr2_1:10585123-10585142 Msa0194480:three_prime_UTR 35.0%
ACCAATCAGAAGAACAATCA+TGG + chr2_1:10585127-10585146 None:intergenic 35.0%
CAAACACATTGATCTCGAAA+AGG - chr2_1:10585154-10585173 Msa0194480:three_prime_UTR 35.0%
! AAAGAAAAGGGAAAGGGTTT+TGG + chr2_1:10585184-10585203 None:intergenic 35.0%
AATCATGGCTTCAATTCAAC+AGG - chr2_1:10585399-10585418 Msa0194480:intron 35.0%
TTCAATTCAACAGGAACACT+TGG - chr2_1:10585408-10585427 Msa0194480:intron 35.0%
!! GCTGTTTTCATAAGCTATTC+TGG - chr2_1:10585653-10585672 Msa0194480:intron 35.0%
! TATTGAACTGTTTGGAACTG+CGG - chr2_1:10585914-10585933 Msa0194480:intron 35.0%
! TCTTTTCTACTAATGAAGGC+CGG + chr2_1:10586034-10586053 None:intergenic 35.0%
GCCTTCATTAGTAGAAAAGA+TGG - chr2_1:10586034-10586053 Msa0194480:intron 35.0%
GATTCATATCACTAGAGGTA+GGG - chr2_1:10586108-10586127 Msa0194480:CDS 35.0%
TATTAGAGAAACTGCCAAGA+AGG - chr2_1:10586147-10586166 Msa0194480:CDS 35.0%
ATTGATCTCTAGATCCTTCT+TGG + chr2_1:10586164-10586183 None:intergenic 35.0%
TAGAACACTATGACATCGTT+TGG - chr2_1:10586210-10586229 Msa0194480:intron 35.0%
! GTGGACTGAACTACATAATA+TGG - chr2_1:10586279-10586298 Msa0194480:intron 35.0%
AAAGAACAATGACACTGTCA+AGG + chr2_1:10586443-10586462 None:intergenic 35.0%
TAATGAACTACTGTAGCAGT+AGG - chr2_1:10586468-10586487 Msa0194480:intron 35.0%
TTTGTGCGATAGATTCACTT+CGG - chr2_1:10586672-10586691 Msa0194480:intron 35.0%
TCAATGCCAAGCATAAAAGA+AGG + chr2_1:10586883-10586902 None:intergenic 35.0%
! CTCAAATTGATTTCACAGGT+TGG + chr2_1:10587026-10587045 None:intergenic 35.0%
TGAAACAGCACAGATGATAA+GGG + chr2_1:10587102-10587121 None:intergenic 35.0%
ATGAAACAGCACAGATGATA+AGG + chr2_1:10587103-10587122 None:intergenic 35.0%
TGAGTTCTTATATCCTTGGT+TGG - chr2_1:10587159-10587178 Msa0194480:intron 35.0%
TATATCCTTGGTTGGATATC+AGG - chr2_1:10587167-10587186 Msa0194480:intron 35.0%
ATATCCTTGGTTGGATATCA+GGG - chr2_1:10587168-10587187 Msa0194480:intron 35.0%
TCTTACAATATCTACTCCCA+AGG + chr2_1:10587305-10587324 None:intergenic 35.0%
ATTTAGTGCTTGGATCAACA+AGG - chr2_1:10587379-10587398 Msa0194480:intron 35.0%
ATCAGGTTCATCAATAGAGA+TGG - chr2_1:10587471-10587490 Msa0194480:intron 35.0%
! TGAGAATTTGCAAGGAGTAT+TGG - chr2_1:10587637-10587656 Msa0194480:intron 35.0%
ATGACAATGATTACCTTGTC+TGG + chr2_1:10587667-10587686 None:intergenic 35.0%
TTTGATGTCCAGTGTTAAAG+AGG + chr2_1:10588289-10588308 None:intergenic 35.0%
TCTTTAACACTGGACATCAA+AGG - chr2_1:10588288-10588307 Msa0194480:intron 35.0%
CAAATAGGGAATGCATAGTT+TGG - chr2_1:10588393-10588412 Msa0194480:intron 35.0%
! CGTCTTTTAGACTTTTGTAC+CGG + chr2_1:10588487-10588506 None:intergenic 35.0%
GATAGCTTCATCACATATCT+TGG - chr2_1:10588506-10588525 Msa0194480:intron 35.0%
! TCTTGGAAGCAAAGTTCTAA+TGG - chr2_1:10588523-10588542 Msa0194480:intron 35.0%
AACAAAGGTTAGATCACCAT+AGG - chr2_1:10588805-10588824 Msa0194480:intron 35.0%
CACCATAGGAAGCAAAAATA+AGG - chr2_1:10588819-10588838 Msa0194480:intron 35.0%
!! CCCTATTCAACTCATTTTTC+TGG - chr2_1:10588916-10588935 Msa0194480:intron 35.0%
AGTAAGCACCTAGATTGATA+AGG - chr2_1:10588946-10588965 Msa0194480:intron 35.0%
AGTGTAGTCCTTATCAATCT+AGG + chr2_1:10588957-10588976 None:intergenic 35.0%
CAAATATCAGAGCTGGTATT+TGG + chr2_1:10589395-10589414 None:intergenic 35.0%
GTGCCTTGAAATTGACTAAA+AGG - chr2_1:10589749-10589768 Msa0194480:intron 35.0%
! AGGCCTTTTAGTCAATTTCA+AGG + chr2_1:10589755-10589774 None:intergenic 35.0%
AAGAATTGGAACCTGATTGA+CGG + chr2_1:10589800-10589819 None:intergenic 35.0%
CGATCGCGATAAAAAGATTA+AGG - chr2_1:10589845-10589864 Msa0194480:intron 35.0%
AAAGACAAAGAGAAAGAGAG+AGG - chr2_1:10589875-10589894 Msa0194480:intron 35.0%
ACATGCTTTCATTCTTGGAT+AGG - chr2_1:10589920-10589939 Msa0194480:CDS 35.0%
CGATCGCGATAAAAAGATTA+AGG - chr2_1:10589845-10589864 Msa0194480:intron 35.0%
AAAGACAAAGAGAAAGAGAG+AGG - chr2_1:10589875-10589894 Msa0194480:intron 35.0%
ACATGCTTTCATTCTTGGAT+AGG - chr2_1:10589920-10589939 Msa0194480:CDS 35.0%
! TGTATAGTTAAGTGCTGCAT+GGG - chr2_1:10590152-10590171 Msa0194480:intron 35.0%
CTGAAGTCAGATTAGATCAA+AGG - chr2_1:10590216-10590235 Msa0194480:intron 35.0%
CGCCTAAAAATTCTAGGTTT+AGG - chr2_1:10590291-10590310 Msa0194480:intron 35.0%
AAGAAAACTCCAATGAGATG+AGG + chr2_1:10590396-10590415 None:intergenic 35.0%
GATGCATTAAAAAACCATGC+TGG + chr2_1:10590428-10590447 None:intergenic 35.0%
! CACTTTCCTGATAATTTTGG+AGG - chr2_1:10590500-10590519 Msa0194480:intron 35.0%
AAGGCCAATATAGTGTACTT+TGG + chr2_1:10590534-10590553 None:intergenic 35.0%
!! GTACACTATATTGGCCTTAA+AGG - chr2_1:10590536-10590555 Msa0194480:intron 35.0%
CATAAGCTCGTAAACAATAG+TGG + chr2_1:10590670-10590689 None:intergenic 35.0%
TACTTGTGATCAGAAGGATT+CGG + chr2_1:10590693-10590712 None:intergenic 35.0%
AGTACTTACTTGTGATCAGA+AGG + chr2_1:10590699-10590718 None:intergenic 35.0%
ACTGTTGAGTTCTCTACATT+AGG - chr2_1:10590799-10590818 Msa0194480:intron 35.0%
GAACTAGAATCGTCTTATGT+TGG - chr2_1:10590896-10590915 Msa0194480:intron 35.0%
AAATTCCAAACCCGATTGTT+AGG - chr2_1:10590975-10590994 Msa0194480:intron 35.0%
! TTTTACAGGTCCTAACAATC+GGG + chr2_1:10590988-10591007 None:intergenic 35.0%
! CTTTTACAGGTCCTAACAAT+CGG + chr2_1:10590989-10591008 None:intergenic 35.0%
TTGTTAGGACCTGTAAAAGA+TGG - chr2_1:10590990-10591009 Msa0194480:intron 35.0%
CAAGAAAGCTATGCTTCTTA+TGG + chr2_1:10591130-10591149 None:intergenic 35.0%
CATCGCAATGTACAAAAACA+TGG + chr2_1:10591210-10591229 None:intergenic 35.0%
GTCGGGTGAAAATACATAAA+TGG - chr2_1:10591334-10591353 Msa0194480:CDS 35.0%
TACTGGATAACACTATCTCT+CGG - chr2_1:10591368-10591387 Msa0194480:CDS 35.0%
GCAATGAAATAATTTGGTCC+CGG - chr2_1:10591429-10591448 Msa0194480:intron 35.0%
!! TATGTAACTTACATCGACTC+CGG + chr2_1:10591451-10591470 None:intergenic 35.0%
ACAACATAACATCGCTTGCT+CGG - chr2_1:10585056-10585075 Msa0194480:three_prime_UTR 40.0%
AATCATGGTCTTCACAGCTA+TGG + chr2_1:10585112-10585131 None:intergenic 40.0%
ACACCGTTTGAATACTTCTG+AGG - chr2_1:10585307-10585326 Msa0194480:CDS 40.0%
GAACACTTGGAAAGCAATGA+GGG - chr2_1:10585421-10585440 Msa0194480:intron 40.0%
AAACTGTTTGGGAGAGCTTA+TGG + chr2_1:10585732-10585751 None:intergenic 40.0%
AGATGGTAGAAACTAGGCTT+AGG - chr2_1:10586051-10586070 Msa0194480:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG - chr2_1:10586060-10586079 Msa0194480:intron 40.0%
GGATTCATATCACTAGAGGT+AGG - chr2_1:10586107-10586126 Msa0194480:CDS 40.0%
GGATCTAGAGATCAATGAGT+TGG - chr2_1:10586168-10586187 Msa0194480:intron 40.0%
! CAATGAGTTGGAGAAAGACA+TGG - chr2_1:10586180-10586199 Msa0194480:intron 40.0%
! ATAAGGCTTGGTTGTTGTTG+TGG - chr2_1:10586260-10586279 Msa0194480:intron 40.0%
! AAGAGCATATCCATAGTTGG+TGG - chr2_1:10586706-10586725 Msa0194480:intron 40.0%
AACAACTTACGCTCTCATCT+TGG + chr2_1:10586752-10586771 None:intergenic 40.0%
! GATGAGAGCGTAAGTTGTTA+TGG - chr2_1:10586753-10586772 Msa0194480:intron 40.0%
!!! TAGTTCCGTTTTAAGATCGG+AGG - chr2_1:10586848-10586867 Msa0194480:intron 40.0%
GCTTTCCTCCGATCTTAAAA+CGG + chr2_1:10586856-10586875 None:intergenic 40.0%
ATGCCAAGCATAAAAGAAGG+TGG + chr2_1:10586880-10586899 None:intergenic 40.0%
AAGGCAATGCATTTAGTGCT+TGG - chr2_1:10587369-10587388 Msa0194480:intron 40.0%
GATTTGGCTGAGAATTTGCA+AGG - chr2_1:10587629-10587648 Msa0194480:intron 40.0%
!! GAGTATTGGAATACCAGACA+AGG - chr2_1:10587651-10587670 Msa0194480:intron 40.0%
TTCTCCATTGTTTATGACCC+GGG + chr2_1:10587835-10587854 None:intergenic 40.0%
CTTCTCCATTGTTTATGACC+CGG + chr2_1:10587836-10587855 None:intergenic 40.0%
! TTTATGACGCCCGTTTGTTT+TGG - chr2_1:10587868-10587887 Msa0194480:intron 40.0%
GTTATAGTGGCAGTTGTGAA+TGG - chr2_1:10588073-10588092 Msa0194480:intron 40.0%
! CTTTTAGGCTTTGCTGCATA+AGG + chr2_1:10588148-10588167 None:intergenic 40.0%
GAACGTTCTCCTTTGTATAG+AGG + chr2_1:10589484-10589503 None:intergenic 40.0%
TGATATGAGTAGAAAGGCAG+CGG + chr2_1:10589656-10589675 None:intergenic 40.0%
CGATGGTGATATGAGTAGAA+AGG + chr2_1:10589662-10589681 None:intergenic 40.0%
CGTCGACAGAGATAAAGAAT+TGG + chr2_1:10589814-10589833 None:intergenic 40.0%
CATGCAGCACTTAACTATAC+AGG + chr2_1:10590153-10590172 None:intergenic 40.0%
! CTGTATAGTTAAGTGCTGCA+TGG - chr2_1:10590151-10590170 Msa0194480:intron 40.0%
TTGGATCAAATCATCTGGCT+AGG + chr2_1:10590254-10590273 None:intergenic 40.0%
AGCCAGATGATTTGATCCAA+CGG - chr2_1:10590254-10590273 Msa0194480:intron 40.0%
GATTGGCGCCTAAAAATTCT+AGG - chr2_1:10590285-10590304 Msa0194480:intron 40.0%
GTGTCACCTCCAAAATTATC+AGG + chr2_1:10590509-10590528 None:intergenic 40.0%
ACTGTAAAATTCAGGGCTGT+TGG - chr2_1:10590583-10590602 Msa0194480:intron 40.0%
! AACCATGGACCATCTTTTAC+AGG + chr2_1:10591002-10591021 None:intergenic 40.0%
GTAAAAGATGGTCCATGGTT+CGG - chr2_1:10591002-10591021 Msa0194480:intron 40.0%
TAAACTGATCTACCGAACCA+TGG + chr2_1:10591017-10591036 None:intergenic 40.0%
GTTCGGTAGATCAGTTTAGA+GGG - chr2_1:10591019-10591038 Msa0194480:intron 40.0%
ACTGGATAACACTATCTCTC+GGG - chr2_1:10591369-10591388 Msa0194480:CDS 40.0%
!! ATGTAACTTACATCGACTCC+GGG + chr2_1:10591450-10591469 None:intergenic 40.0%
! TGGCTAGATACTTGTTGATC+TGG - chr2_1:10591481-10591500 Msa0194480:CDS 40.0%
! GCTTTGAATGAAGCAACTCC+TGG - chr2_1:10585254-10585273 Msa0194480:three_prime_UTR 45.0%
GTATTCAAACGGTGTTCCCA+AGG + chr2_1:10585302-10585321 None:intergenic 45.0%
GGAACACTTGGAAAGCAATG+AGG - chr2_1:10585420-10585439 Msa0194480:intron 45.0%
TGGTAGAAACTAGGCTTAGG+TGG - chr2_1:10586054-10586073 Msa0194480:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - chr2_1:10586059-10586078 Msa0194480:intron 45.0%
TGATATGAATCCCCTCCATC+TGG + chr2_1:10586099-10586118 None:intergenic 45.0%
GAGGGGATTCATATCACTAG+AGG - chr2_1:10586103-10586122 Msa0194480:CDS 45.0%
TTACATGAGCCAGAGATCAC+TGG - chr2_1:10586404-10586423 Msa0194480:intron 45.0%
CAGTTAATGCCAGTGATCTC+TGG + chr2_1:10586416-10586435 None:intergenic 45.0%
CTTACGCTCTCATCTTGGAA+GGG + chr2_1:10586747-10586766 None:intergenic 45.0%
ACTTACGCTCTCATCTTGGA+AGG + chr2_1:10586748-10586767 None:intergenic 45.0%
! GCACCACCTTCTTTTATGCT+TGG - chr2_1:10586874-10586893 Msa0194480:intron 45.0%
! GATTTCACAGGTTGGACTCT+AGG + chr2_1:10587018-10587037 None:intergenic 45.0%
ATCACCCTGATATCCAACCA+AGG + chr2_1:10587175-10587194 None:intergenic 45.0%
ATGTACCCGGGATTTAACCT+TGG - chr2_1:10587285-10587304 Msa0194480:intron 45.0%
TGTACCCGGGATTTAACCTT+GGG - chr2_1:10587286-10587305 Msa0194480:intron 45.0%
TACTCCCAAGGTTAAATCCC+GGG + chr2_1:10587293-10587312 None:intergenic 45.0%
CTACTCCCAAGGTTAAATCC+CGG + chr2_1:10587294-10587313 None:intergenic 45.0%
ACAAAGCATGCAAGCCATTC+AGG - chr2_1:10587512-10587531 Msa0194480:intron 45.0%
ATGGATGAATGATACCGCCA+TGG - chr2_1:10589250-10589269 Msa0194480:intron 45.0%
TGGATGAATGATACCGCCAT+GGG - chr2_1:10589251-10589270 Msa0194480:intron 45.0%
!!! TTTTTGGGTAGAGGGTGTCA+AGG - chr2_1:10589311-10589330 Msa0194480:intron 45.0%
!!! TTTTGGGTAGAGGGTGTCAA+GGG - chr2_1:10589312-10589331 Msa0194480:intron 45.0%
!! CAGAGCTGGTATTTGGTTTG+TGG + chr2_1:10589388-10589407 None:intergenic 45.0%
TCGGAAACCTTCATCAGACT+CGG - chr2_1:10589531-10589550 Msa0194480:intron 45.0%
GTTCTTTCCGAGTCTGATGA+AGG + chr2_1:10589541-10589560 None:intergenic 45.0%
AGTCTCTTTCCCTTTGAACG+CGG - chr2_1:10589562-10589581 Msa0194480:intron 45.0%
GAGTAACAGAGGGAGTGAAT+CGG + chr2_1:10589725-10589744 None:intergenic 45.0%
AGGCACGTAAGAGTAACAGA+GGG + chr2_1:10589735-10589754 None:intergenic 45.0%
AAGGCACGTAAGAGTAACAG+AGG + chr2_1:10589736-10589755 None:intergenic 45.0%
TTCTTTATCTCTGTCGACGC+AGG - chr2_1:10589815-10589834 Msa0194480:intron 45.0%
CGGTCACATGCTTTCATTCT+TGG - chr2_1:10589915-10589934 Msa0194480:CDS 45.0%
CGGTCACATGCTTTCATTCT+TGG - chr2_1:10589915-10589934 Msa0194480:CDS 45.0%
! TGTCACCATTTTCCCACAAG+TGG + chr2_1:10590084-10590103 None:intergenic 45.0%
GTCCGTTGGATCAAATCATC+TGG + chr2_1:10590259-10590278 None:intergenic 45.0%
ATCCAACGGACATGCTTGAT+TGG - chr2_1:10590268-10590287 Msa0194480:intron 45.0%
! GTGTCATTGCCTCATCTCAT+TGG - chr2_1:10590384-10590403 Msa0194480:intron 45.0%
TTCTTGTGTCTATGCCAGCA+TGG - chr2_1:10590411-10590430 Msa0194480:intron 45.0%
GACCTGTAAAAGATGGTCCA+TGG - chr2_1:10590997-10591016 Msa0194480:intron 45.0%
! GGTTCGGTAGATCAGTTTAG+AGG - chr2_1:10591018-10591037 Msa0194480:intron 45.0%
CGGGCGTAAAAGAATACAGT+TGG - chr2_1:10591388-10591407 Msa0194480:intron 45.0%
ACATAACATCGCTTGCTCGG+TGG - chr2_1:10585059-10585078 Msa0194480:three_prime_UTR 50.0%
ATGGAGAGTAGACCAGATGG+AGG - chr2_1:10586084-10586103 Msa0194480:CDS 50.0%
TGGAGAGTAGACCAGATGGA+GGG - chr2_1:10586085-10586104 Msa0194480:CDS 50.0%
! AAGCCTTATCCCACCAAGTG+GGG + chr2_1:10586249-10586268 None:intergenic 50.0%
! CAAGCCTTATCCCACCAAGT+GGG + chr2_1:10586250-10586269 None:intergenic 50.0%
!! TCCATAGTTGGTGGAGCTGA+TGG - chr2_1:10586715-10586734 Msa0194480:intron 50.0%
TCCATCAGCTCCACCAACTA+TGG + chr2_1:10586719-10586738 None:intergenic 50.0%
TCCATTGTTTATGACCCGGG+CGG + chr2_1:10587832-10587851 None:intergenic 50.0%
ATGAATGATACCGCCATGGG+TGG - chr2_1:10589254-10589273 Msa0194480:intron 50.0%
TTCTTCTTCGACACCACCCA+TGG + chr2_1:10589270-10589289 None:intergenic 50.0%
! ATGGGTGGTGTCGAAGAAGA+AGG - chr2_1:10589269-10589288 Msa0194480:intron 50.0%
!! TTTGGGTAGAGGGTGTCAAG+GGG - chr2_1:10589313-10589332 Msa0194480:intron 50.0%
GCGTTCAAAGGGAAAGAGAC+TGG + chr2_1:10589563-10589582 None:intergenic 50.0%
! GTGTTGACGGAGGAAATCGA+TGG + chr2_1:10589679-10589698 None:intergenic 50.0%
!! GGAGGTGAAGAAGGTGTTGA+CGG + chr2_1:10589692-10589711 None:intergenic 50.0%
GAGTGAATCGGAGCGAGATT+GGG + chr2_1:10589713-10589732 None:intergenic 50.0%
CAAGTGGCTGCAAGTTGTGT+TGG + chr2_1:10590068-10590087 None:intergenic 50.0%
ACACAACTTGCAGCCACTTG+TGG - chr2_1:10590068-10590087 Msa0194480:intron 50.0%
CACAACTTGCAGCCACTTGT+GGG - chr2_1:10590069-10590088 Msa0194480:intron 50.0%
TGCAGCCACTTGTGGGAAAA+TGG - chr2_1:10590076-10590095 Msa0194480:intron 50.0%
CCTGAGTAGCTTCGCCTTTA+AGG + chr2_1:10590553-10590572 None:intergenic 50.0%
CCTTAAAGGCGAAGCTACTC+AGG - chr2_1:10590550-10590569 Msa0194480:intron 50.0%
CAGGTCCTAACAATCGGGTT+TGG + chr2_1:10590983-10591002 None:intergenic 50.0%
TACAGGACACGTGCTGAAAG+CGG - chr2_1:10591295-10591314 Msa0194480:intron 50.0%
GGTGGAGGTCTTTCACATGT+CGG - chr2_1:10591316-10591335 Msa0194480:intron 50.0%
GTGGAGGTCTTTCACATGTC+GGG - chr2_1:10591317-10591336 Msa0194480:intron 50.0%
! GCTCGGTGGTGCAGTGAAAA+TGG - chr2_1:10585073-10585092 Msa0194480:three_prime_UTR 55.0%
! AGGCTTAGGTGGTTTGGGCA+TGG - chr2_1:10586065-10586084 Msa0194480:intron 55.0%
GGCATGGAGAGTAGACCAGA+TGG - chr2_1:10586081-10586100 Msa0194480:CDS 55.0%
GGAGAGTAGACCAGATGGAG+GGG - chr2_1:10586086-10586105 Msa0194480:CDS 55.0%
TTCATGTAGCCGACCCCACT+TGG - chr2_1:10586233-10586252 Msa0194480:intron 55.0%
CTTATCCCACCAAGTGGGGT+CGG + chr2_1:10586245-10586264 None:intergenic 55.0%
! CCAAGCCTTATCCCACCAAG+TGG + chr2_1:10586251-10586270 None:intergenic 55.0%
! CCACTTGGTGGGATAAGGCT+TGG - chr2_1:10586248-10586267 Msa0194480:intron 55.0%
ACCGCCCGGGTCATAAACAA+TGG - chr2_1:10587828-10587847 Msa0194480:intron 55.0%
TTCTTCGACACCACCCATGG+CGG + chr2_1:10589267-10589286 None:intergenic 55.0%
CTCTTTCCCTTTGAACGCGG+CGG - chr2_1:10589565-10589584 Msa0194480:intron 55.0%
GTCAAGGTCAGTGGCTGTGA+CGG + chr2_1:10589623-10589642 None:intergenic 55.0%
GATGGCTAGGTCAAGGTCAG+TGG + chr2_1:10589632-10589651 None:intergenic 55.0%
GAGTAGAAAGGCAGCGGTGA+TGG + chr2_1:10589650-10589669 None:intergenic 55.0%
!! GGTGAAGAAGGTGTTGACGG+AGG + chr2_1:10589689-10589708 None:intergenic 55.0%
GCGAGATTGGGAGGTGAAGA+AGG + chr2_1:10589701-10589720 None:intergenic 55.0%
TGAATCGGAGCGAGATTGGG+AGG + chr2_1:10589710-10589729 None:intergenic 55.0%
GGAGTGAATCGGAGCGAGAT+TGG + chr2_1:10589714-10589733 None:intergenic 55.0%
ACCTGATTGACGGCGATTGC+CGG + chr2_1:10589790-10589809 None:intergenic 55.0%
TCGCGATCGGCAAGTTGTGT+TGG + chr2_1:10589951-10589970 None:intergenic 55.0%
CGCCAATCAAGCATGTCCGT+TGG + chr2_1:10590273-10590292 None:intergenic 55.0%
ATGTAGCCGACCCCACTTGG+TGG - chr2_1:10586236-10586255 Msa0194480:intron 60.0%
TGTAGCCGACCCCACTTGGT+GGG - chr2_1:10586237-10586256 Msa0194480:intron 60.0%
! CGACCCCACTTGGTGGGATA+AGG - chr2_1:10586243-10586262 Msa0194480:intron 60.0%
! CTTTTACCCGTGCTACCGCC+CGG - chr2_1:10587814-10587833 Msa0194480:intron 60.0%
! TTTTACCCGTGCTACCGCCC+GGG - chr2_1:10587815-10587834 Msa0194480:intron 60.0%
TTATGACCCGGGCGGTAGCA+CGG + chr2_1:10587824-10587843 None:intergenic 60.0%
!! TAGAGGGTGTCAAGGGGAGG+AGG - chr2_1:10589319-10589338 Msa0194480:intron 60.0%
GCTGTGACGGCGGTTTCTGT+CGG + chr2_1:10589610-10589629 None:intergenic 60.0%
AAGGTCAGTGGCTGTGACGG+CGG + chr2_1:10589620-10589639 None:intergenic 60.0%
! CAGCGGTGATGGCTAGGTCA+AGG + chr2_1:10589639-10589658 None:intergenic 60.0%
! GAAAGGCAGCGGTGATGGCT+AGG + chr2_1:10589645-10589664 None:intergenic 60.0%
! AAGGCCTCGCGACTTGCTTC+CGG - chr2_1:10589768-10589787 Msa0194480:intron 60.0%
ATTGCCGGAAGCAAGTCGCG+AGG + chr2_1:10589775-10589794 None:intergenic 60.0%
TCCGGCAATCGCCGTCAATC+AGG - chr2_1:10589786-10589805 Msa0194480:intron 60.0%
AGGACACGTGCTGAAAGCGG+TGG - chr2_1:10591298-10591317 Msa0194480:intron 60.0%
ACACGTGCTGAAAGCGGTGG+AGG - chr2_1:10591301-10591320 Msa0194480:intron 60.0%
TATGACCCGGGCGGTAGCAC+GGG + chr2_1:10587823-10587842 None:intergenic 65.0%
!! GGGTAGAGGGTGTCAAGGGG+AGG - chr2_1:10589316-10589335 Msa0194480:intron 65.0%
!! AGAGCGCCGCCGCGTTCAAA+GGG + chr2_1:10589574-10589593 None:intergenic 65.0%
!! TAGAGCGCCGCCGCGTTCAA+AGG + chr2_1:10589575-10589594 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 10585013 10591636 10585013 ID=Msa0194480;Name=Msa0194480
chr2_1 mRNA 10585013 10591636 10585013 ID=Msa0194480-mRNA-1;Parent=Msa0194480;Name=Msa0194480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=79|1|1|1|0.87|0.88|9|294|204
chr2_1 exon 10585013 10585349 10585013 ID=Msa0194480-mRNA-1:exon:4801;Parent=Msa0194480-mRNA-1
chr2_1 exon 10585940 10586001 10585940 ID=Msa0194480-mRNA-1:exon:4800;Parent=Msa0194480-mRNA-1
chr2_1 exon 10586078 10586186 10586078 ID=Msa0194480-mRNA-1:exon:4799;Parent=Msa0194480-mRNA-1
chr2_1 exon 10588977 10589026 10588977 ID=Msa0194480-mRNA-1:exon:4798;Parent=Msa0194480-mRNA-1
chr2_1 exon 10589116 10589173 10589116 ID=Msa0194480-mRNA-1:exon:4797;Parent=Msa0194480-mRNA-1
chr2_1 exon 10589888 10589965 10589888 ID=Msa0194480-mRNA-1:exon:4796;Parent=Msa0194480-mRNA-1
chr2_1 exon 10591179 10591228 10591179 ID=Msa0194480-mRNA-1:exon:4795;Parent=Msa0194480-mRNA-1
chr2_1 exon 10591321 10591401 10591321 ID=Msa0194480-mRNA-1:exon:4794;Parent=Msa0194480-mRNA-1
chr2_1 exon 10591474 10591636 10591474 ID=Msa0194480-mRNA-1:exon:4793;Parent=Msa0194480-mRNA-1
chr2_1 five_prime_UTR 10591558 10591636 10591558 ID=Msa0194480-mRNA-1:five_prime_utr;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10591474 10591557 10591474 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10591321 10591401 10591321 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10591179 10591228 10591179 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10589888 10589965 10589888 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10589116 10589173 10589116 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10588977 10589026 10588977 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10586078 10586186 10586078 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10585940 10586001 10585940 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 CDS 10585307 10585349 10585307 ID=Msa0194480-mRNA-1:cds;Parent=Msa0194480-mRNA-1
chr2_1 three_prime_UTR 10585013 10585306 10585013 ID=Msa0194480-mRNA-1:three_prime_utr;Parent=Msa0194480-mRNA-1
Gene Sequence

>Msa0194480

ATGGCGTGTGTGCATGACCATAGCTGTGAAGACCATGATTGTTCTTCTGATTGGTCTCTCTACAAACACATTGATCTCGAAAAGGTATCTGCTTTGAATGAAGCAACTCCTGGTAGTGTTAAATCAGTTTTCAAACCTTGGGAACACCGTTTGAATACTTCTGAGGAACACTTGGAAAGCAATGAGGGTGATCCTGAGTTAATTGTATTCATTCCATTCACTTCGGACGTAAAGATTAAGAGCATATCCATAGTTGGTGGAGCTGATGGAACAAGCCCTTCCAAGATGAGAGCGTTCATCAATAGAGATGGCATTGACTTTTCAGATGCACAAAGCATGCAAGCCATTCAGGAATGGGATTTGGCTGAGAATTTGCAAGGAGTATTGGAATACCAGACAAGGTATTCTAAATTTCAAGGTGTGGGAAATATTACATTGCACTTTCCTGATAATTTTGGAGGTGACACTACCAAAGTACACTATATTGGCCTTAAAGGCGAAGCTACTCAGTTAAAGAGAGATGTCGTTGCCACTATTGTTTACGAGCTTATGCCGAATCCTTCTGATCACAAGACACGTGCTGAAAGCGGTGGAGGTCTTTCACATGTCGGGTGA

Protein sequence

>Msa0194480

MACVHDHSCEDHDCSSDWSLYKHIDLEKVSALNEATPGSVKSVFKPWEHRLNTSEEHLESNEGDPELIVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWDLAENLQGVLEYQTRYSKFQGVGNITLHFPDNFGGDTTKVHYIGLKGEATQLKRDVVATIVYELMPNPSDHKTRAESGGGLSHVG*