AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0663900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663900 MtrunA17_Chr4g0001601 96.341 82 3 0 1 82 1 82 4.74e-54 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663900 AT1G16000.1 52.326 86 37 1 1 82 1 86 7.97e-29 99.0
Msa0663900 AT1G80890.1 57.317 82 33 1 1 82 1 80 9.27e-22 80.9

Find 19 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTTCAACAAAATGTT+AGG 0.211882 4_4:+2829682 None:intergenic
AAAAGCGGCGAAGGTGGATT+TGG 0.337625 4_4:+2829780 Msa0663900:CDS
GCTGTTTAAAGCATAGTAAT+AGG 0.347083 4_4:+2833820 Msa0663900:three_prime_UTR
AATAATTGTTGCATATGATT+TGG 0.390888 4_4:+2833798 Msa0663900:three_prime_UTR
CGAGATCATTTGGAAGAAGC+AGG 0.431451 4_4:-2833566 None:intergenic
GCGAAGGTGGATTTGGATCA+AGG 0.444650 4_4:+2829787 Msa0663900:CDS
AAAATTTCAACAAAATGTTA+GGG 0.452122 4_4:+2829683 None:intergenic
TGCAACAATTATTATCATAT+AGG 0.459109 4_4:-2833788 None:intergenic
TCAATCTCATCAAGATTACT+TGG 0.473577 4_4:+2833502 Msa0663900:CDS
TTAAAGCATAGTAATAGGAC+AGG 0.534411 4_4:+2833825 Msa0663900:three_prime_UTR
AAGGTGAAAAGCGGCGAAGG+TGG 0.563824 4_4:+2829774 Msa0663900:CDS
GGCTTGTTTGATAGAGCAGT+AGG 0.570090 4_4:+2829704 Msa0663900:five_prime_UTR
GCAAAGGTGAAAAGCGGCGA+AGG 0.571778 4_4:+2829771 Msa0663900:CDS
CCATGGTTTCTTATGAACAG+AGG 0.615850 4_4:+2829888 Msa0663900:CDS
GCAAAAGCAAAGGTGAAAAG+CGG 0.624401 4_4:+2829765 Msa0663900:CDS
TTGAATCAAATTCTATATAG+CGG 0.633543 4_4:+2829810 Msa0663900:CDS
CCTCTGTTCATAAGAAACCA+TGG 0.639570 4_4:-2829888 None:intergenic
GAGCAACGAAGCAAAAGCAA+AGG 0.650954 4_4:+2829755 Msa0663900:CDS
TAAAGCATAGTAATAGGACA+GGG 0.695858 4_4:+2833826 Msa0663900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAGTTATTAGAATTT+GGG - chr4_4:2830192-2830211 None:intergenic 10.0%
!! TTATTTAAAGAAAAATAATC+AGG + chr4_4:2830659-2830678 Msa0663900:intron 10.0%
!! AGTTTATAGTAAATTTAATA+TGG - chr4_4:2831027-2831046 None:intergenic 10.0%
!! ATATTAAATTTACTATAAAC+TGG + chr4_4:2831026-2831045 Msa0663900:intron 10.0%
!!! TTTGAAATTTTTTAATGATT+TGG - chr4_4:2831126-2831145 None:intergenic 10.0%
!! TTAATAACAGAATTATATAA+CGG + chr4_4:2831832-2831851 Msa0663900:intron 10.0%
!!! ACTAACTATTTTAATAATAA+AGG - chr4_4:2832036-2832055 None:intergenic 10.0%
!! TTTATTATTAAAATAGTTAG+TGG + chr4_4:2832035-2832054 Msa0663900:intron 10.0%
!! TTAAAAATATGAGTATTTAT+GGG - chr4_4:2832255-2832274 None:intergenic 10.0%
!! TTTAAAAATATGAGTATTTA+TGG - chr4_4:2832256-2832275 None:intergenic 10.0%
!!! AGTTTTAAATTTATATAGTA+GGG + chr4_4:2833184-2833203 Msa0663900:intron 10.0%
!!! AAAAGTTATTTCTATAATTG+AGG - chr4_4:2830100-2830119 None:intergenic 15.0%
!! GTATAAAAGTTATTAGAATT+TGG - chr4_4:2830193-2830212 None:intergenic 15.0%
!! TTCTTTAAATAAATTTCTCT+TGG - chr4_4:2830651-2830670 None:intergenic 15.0%
!!! AGAAAATTTCATGTAAATTT+TGG + chr4_4:2831687-2831706 Msa0663900:intron 15.0%
!!! ATTATATAACGGAAATTATT+AGG + chr4_4:2831843-2831862 Msa0663900:intron 15.0%
!! TTTGAAAAAATGAGTTTAAT+TGG + chr4_4:2832002-2832021 Msa0663900:intron 15.0%
!! CGAATTATGAATAAATAAAT+AGG - chr4_4:2832332-2832351 None:intergenic 15.0%
!! AACTGAAATACAATAAATAA+AGG + chr4_4:2832862-2832881 Msa0663900:intron 15.0%
!! AAAACTCACTATATTTATAT+GGG - chr4_4:2833170-2833189 None:intergenic 15.0%
!! TAAAACTCACTATATTTATA+TGG - chr4_4:2833171-2833190 None:intergenic 15.0%
!!! GAGTTTTAAATTTATATAGT+AGG + chr4_4:2833183-2833202 Msa0663900:intron 15.0%
!! TATTATATGTCTATTTAAAC+TGG + chr4_4:2833294-2833313 Msa0663900:intron 15.0%
!! AACTAAATGAAATGTATAAA+TGG - chr4_4:2833440-2833459 None:intergenic 15.0%
!! TTGAATCAAATTCTATATAG+CGG + chr4_4:2829810-2829829 Msa0663900:CDS 20.0%
!! AGTTTCAAAGTTATTAACTT+TGG + chr4_4:2829968-2829987 Msa0663900:intron 20.0%
!! GTTTCAAAGTTATTAACTTT+GGG + chr4_4:2829969-2829988 Msa0663900:intron 20.0%
!! AAGTTATATGAAAATAGTCT+AGG + chr4_4:2830064-2830083 Msa0663900:intron 20.0%
!! TTTATAAGTAAGGTTGAATT+AGG + chr4_4:2830161-2830180 Msa0663900:intron 20.0%
!! GAAATACAAATTGTTAACTT+AGG - chr4_4:2831219-2831238 None:intergenic 20.0%
!!! TTGGTTTTGTAAATTTGATT+TGG + chr4_4:2831615-2831634 Msa0663900:intron 20.0%
!! GGAAATTATTAGGAATTTAA+TGG + chr4_4:2831853-2831872 Msa0663900:intron 20.0%
!! ATGGAGTAATAAATAATTGT+AGG - chr4_4:2831912-2831931 None:intergenic 20.0%
!!! CTCATATTAAGTATCTTTTA+AGG + chr4_4:2831936-2831955 Msa0663900:intron 20.0%
!!! ATTTTGATTGTTAATGTTAG+TGG + chr4_4:2832630-2832649 Msa0663900:intron 20.0%
!! CAAAATACACAAAATTAAAG+GGG - chr4_4:2832695-2832714 None:intergenic 20.0%
!! GCAAAATACACAAAATTAAA+GGG - chr4_4:2832696-2832715 None:intergenic 20.0%
!! AGCAAAATACACAAAATTAA+AGG - chr4_4:2832697-2832716 None:intergenic 20.0%
!! AATTAATCATAAATCCTAAC+AGG - chr4_4:2832738-2832757 None:intergenic 20.0%
!!! AGATTGAGTTGTATATAAAT+AGG + chr4_4:2832978-2832997 Msa0663900:intron 20.0%
!!! GATTGAGTTGTATATAAATA+GGG + chr4_4:2832979-2832998 Msa0663900:intron 20.0%
!! ACAAGTTAAGAATCTAAAAA+TGG - chr4_4:2833135-2833154 None:intergenic 20.0%
!! GGTTTAATAGAATAACAAAT+AGG - chr4_4:2833334-2833353 None:intergenic 20.0%
!! TGCAACAATTATTATCATAT+AGG - chr4_4:2833791-2833810 None:intergenic 20.0%
!! AATAATTGTTGCATATGATT+TGG + chr4_4:2833798-2833817 Msa0663900:three_prime_UTR 20.0%
!! TTTGGGTTTATACCAATAAT+GGG + chr4_4:2829986-2830005 Msa0663900:intron 25.0%
!! TTTTGTTAAGAGTCCTATAT+TGG + chr4_4:2830116-2830135 Msa0663900:intron 25.0%
! CTTACTTATAAACTATGTTC+CGG - chr4_4:2830153-2830172 None:intergenic 25.0%
! AAAACACTTGATGGAATAAA+TGG + chr4_4:2830429-2830448 Msa0663900:intron 25.0%
! TGGAACATAGTAACAATAAT+TGG + chr4_4:2830449-2830468 Msa0663900:intron 25.0%
! GGAACATAGTAACAATAATT+GGG + chr4_4:2830450-2830469 Msa0663900:intron 25.0%
! TAAAGAAAAATAATCAGGTC+TGG + chr4_4:2830664-2830683 Msa0663900:intron 25.0%
!!! TTTCAATCTACTTTTTTTGG+AGG - chr4_4:2830714-2830733 None:intergenic 25.0%
!!! GACTTTCAATCTACTTTTTT+TGG - chr4_4:2830717-2830736 None:intergenic 25.0%
! AAAAAAGTAGATTGAAAGTC+AGG + chr4_4:2830717-2830736 Msa0663900:intron 25.0%
! AAAAAGTAGATTGAAAGTCA+GGG + chr4_4:2830718-2830737 Msa0663900:intron 25.0%
! TATCTCTTAATGTCTCTTAT+TGG + chr4_4:2830851-2830870 Msa0663900:intron 25.0%
!! GGATTTTAGATTAACTTTTC+CGG + chr4_4:2831047-2831066 Msa0663900:intron 25.0%
!!! GAAAAAGAAGATGGATTAAA+GGG + chr4_4:2831181-2831200 Msa0663900:intron 25.0%
!!! AAAAAGAAGATGGATTAAAG+GGG + chr4_4:2831182-2831201 Msa0663900:intron 25.0%
!!! CTCTCTATTTCAACTTTTTT+TGG + chr4_4:2831254-2831273 Msa0663900:intron 25.0%
!!! TCTATTTCAACTTTTTTTGG+TGG + chr4_4:2831257-2831276 Msa0663900:intron 25.0%
! AATGAGTTTAATTGGCTAAA+TGG + chr4_4:2832010-2832029 Msa0663900:intron 25.0%
! TATTAAAATAGTTAGTGGAG+TGG + chr4_4:2832040-2832059 Msa0663900:intron 25.0%
!! AACTGTTCTGTTTCATTTTA+AGG + chr4_4:2832274-2832293 Msa0663900:intron 25.0%
!! ACTGTTCTGTTTCATTTTAA+GGG + chr4_4:2832275-2832294 Msa0663900:intron 25.0%
!! TTTTTGTAACCAGAAGAAAT+GGG - chr4_4:2832359-2832378 None:intergenic 25.0%
!!! TTTTTTGTAACCAGAAGAAA+TGG - chr4_4:2832360-2832379 None:intergenic 25.0%
! TATTTATATGGGTAGTGTTA+GGG - chr4_4:2833159-2833178 None:intergenic 25.0%
! ATATTTATATGGGTAGTGTT+AGG - chr4_4:2833160-2833179 None:intergenic 25.0%
!! GTAATTTTGAATTTCCAAAC+AGG + chr4_4:2833411-2833430 Msa0663900:intron 25.0%
!!! TCTTTTAAATCTAGAGTTAC+TGG - chr4_4:2833621-2833640 None:intergenic 25.0%
!! AAAGACATTAGATATTTTGC+TGG + chr4_4:2833636-2833655 Msa0663900:three_prime_UTR 25.0%
AAACCATGGTACAGAAAAAA+CGG - chr4_4:2829877-2829896 None:intergenic 30.0%
! CTTTGGGTTTATACCAATAA+TGG + chr4_4:2829985-2830004 Msa0663900:intron 30.0%
! TATATTGGATATGATGATGC+CGG + chr4_4:2830131-2830150 Msa0663900:intron 30.0%
CGGAACATAGTTTATAAGTA+AGG + chr4_4:2830151-2830170 Msa0663900:intron 30.0%
CATGAGTAAATGAAGTTCTT+CGG + chr4_4:2830510-2830529 Msa0663900:intron 30.0%
ATGAGTAAATGAAGTTCTTC+GGG + chr4_4:2830511-2830530 Msa0663900:intron 30.0%
! TGGATTAAAAGTGATTTTCG+AGG - chr4_4:2830631-2830650 None:intergenic 30.0%
!! GTTTGTCCTATAGTTTTACT+TGG + chr4_4:2830873-2830892 Msa0663900:intron 30.0%
AAGAGACCAAGTAAAACTAT+AGG - chr4_4:2830882-2830901 None:intergenic 30.0%
! AAAGTAAAGTGATTTGTGTC+CGG - chr4_4:2831069-2831088 None:intergenic 30.0%
!! TGGTTTTGCAAGATTGATTT+TGG - chr4_4:2831106-2831125 None:intergenic 30.0%
! ATCTTCTTTTTCCTTACAAC+CGG - chr4_4:2831173-2831192 None:intergenic 30.0%
!! GGAAAAAGAAGATGGATTAA+AGG + chr4_4:2831180-2831199 Msa0663900:intron 30.0%
!! TCCTAACAATTGCTTTTGTT+TGG - chr4_4:2831300-2831319 None:intergenic 30.0%
GAAAGTTTCCTGACAAAAAA+GGG + chr4_4:2831318-2831337 Msa0663900:intron 30.0%
AAAGTTTCCTGACAAAAAAG+GGG + chr4_4:2831319-2831338 Msa0663900:intron 30.0%
GAAACGTACAATAACAGTAT+GGG - chr4_4:2831428-2831447 None:intergenic 30.0%
AGAAACGTACAATAACAGTA+TGG - chr4_4:2831429-2831448 None:intergenic 30.0%
TTCACACTGATCATTCTAAA+AGG + chr4_4:2831521-2831540 Msa0663900:intron 30.0%
GATACTTAATATGAGACAGA+TGG - chr4_4:2831931-2831950 None:intergenic 30.0%
!! GTTTCATTTTAAGGGTATAC+TGG + chr4_4:2832283-2832302 Msa0663900:intron 30.0%
! CTGTTAGTAGTTAAGGTATT+TGG + chr4_4:2832607-2832626 Msa0663900:intron 30.0%
TTGAGTTTATGTATCCTGTT+AGG + chr4_4:2832721-2832740 Msa0663900:intron 30.0%
!! TTTCTTAACTTGTGCCTTAA+GGG - chr4_4:2833020-2833039 None:intergenic 30.0%
TATATAGTAGGGTTAGAAAC+TGG + chr4_4:2833195-2833214 Msa0663900:intron 30.0%
ATATAGTAGGGTTAGAAACT+GGG + chr4_4:2833196-2833215 Msa0663900:intron 30.0%
!! GTTGTTTCTATTCTGTACTT+AGG + chr4_4:2833226-2833245 Msa0663900:intron 30.0%
TATTCTATTAAACCGAGACT+TGG + chr4_4:2833340-2833359 Msa0663900:intron 30.0%
TGTATAAATGGATACCTGTT+TGG - chr4_4:2833428-2833447 None:intergenic 30.0%
TCAATCTCATCAAGATTACT+TGG + chr4_4:2833502-2833521 Msa0663900:CDS 30.0%
TGGAAAAAGCTAATAAAGCA+AGG + chr4_4:2833522-2833541 Msa0663900:CDS 30.0%
!! AAATGCTTTTCGAGATCATT+TGG - chr4_4:2833579-2833598 None:intergenic 30.0%
! GCTGTTTAAAGCATAGTAAT+AGG + chr4_4:2833820-2833839 Msa0663900:three_prime_UTR 30.0%
TTAAAGCATAGTAATAGGAC+AGG + chr4_4:2833825-2833844 Msa0663900:three_prime_UTR 30.0%
TAAAGCATAGTAATAGGACA+GGG + chr4_4:2833826-2833845 Msa0663900:three_prime_UTR 30.0%
AGCTAATGACAACCCATTAT+TGG - chr4_4:2830001-2830020 None:intergenic 35.0%
GGCATCATCATATCCAATAT+AGG - chr4_4:2830132-2830151 None:intergenic 35.0%
! TTTTCAGTGCCAATTACAGT+GGG - chr4_4:2830302-2830321 None:intergenic 35.0%
! ATTTTCAGTGCCAATTACAG+TGG - chr4_4:2830303-2830322 None:intergenic 35.0%
AGTAACAATAATTGGGAGCA+TGG + chr4_4:2830457-2830476 Msa0663900:intron 35.0%
TTACTCATGAACCTTAGTCA+AGG - chr4_4:2830499-2830518 None:intergenic 35.0%
TGATTGTTGTGTCCTTCATT+TGG + chr4_4:2830913-2830932 Msa0663900:intron 35.0%
ATGTAGGATTGACCAAATGA+AGG - chr4_4:2830928-2830947 None:intergenic 35.0%
TTCTCAACTCAGTGCATATA+TGG - chr4_4:2831002-2831021 None:intergenic 35.0%
GGTTGTAAGGAAAAAGAAGA+TGG + chr4_4:2831172-2831191 Msa0663900:intron 35.0%
GCCAAACAAAAGCAATTGTT+AGG + chr4_4:2831296-2831315 Msa0663900:intron 35.0%
GGAAAGTTTCCTGACAAAAA+AGG + chr4_4:2831317-2831336 Msa0663900:intron 35.0%
AAGTTTCCTGACAAAAAAGG+GGG + chr4_4:2831320-2831339 Msa0663900:intron 35.0%
!!! TTTTCTGAGATCTTTGACTG+CGG - chr4_4:2831349-2831368 None:intergenic 35.0%
ACTTGCCTTCATGTATGTTT+GGG + chr4_4:2831564-2831583 Msa0663900:intron 35.0%
AACCTAATGTAAATGCTACC+AGG + chr4_4:2831722-2831741 Msa0663900:intron 35.0%
AACCTGGTAGCATTTACATT+AGG - chr4_4:2831727-2831746 None:intergenic 35.0%
TAGACCGCATAAGAAACAAT+CGG + chr4_4:2831781-2831800 Msa0663900:intron 35.0%
! TCTTCCGATTGTTTCTTATG+CGG - chr4_4:2831788-2831807 None:intergenic 35.0%
AATCGGAAGAATGACAGTTA+TGG + chr4_4:2831798-2831817 Msa0663900:intron 35.0%
GAAGAATGACAGTTATGGTT+AGG + chr4_4:2831803-2831822 Msa0663900:intron 35.0%
AGAACAAAGCTTTGCAATGA+AGG - chr4_4:2832395-2832414 None:intergenic 35.0%
! GTTGTTCTTCTCTGTTTTGT+TGG + chr4_4:2832484-2832503 Msa0663900:intron 35.0%
CTCTGTTCTGTTAGTAGTTA+AGG + chr4_4:2832600-2832619 Msa0663900:intron 35.0%
AATGATATCTTGTGCCCTTA+AGG + chr4_4:2833003-2833022 Msa0663900:intron 35.0%
!! GTTTCTTAACTTGTGCCTTA+AGG - chr4_4:2833021-2833040 None:intergenic 35.0%
CGTTAACTTTGCTTGATGTT+TGG - chr4_4:2833392-2833411 None:intergenic 35.0%
!!! ATTGATGTTTTGATCCTGCA+AGG - chr4_4:2833487-2833506 None:intergenic 35.0%
CCGAAAAAACTCGAAAGAAT+GGG - chr4_4:2833666-2833685 None:intergenic 35.0%
!!! CCCATTCTTTCGAGTTTTTT+CGG + chr4_4:2833663-2833682 Msa0663900:three_prime_UTR 35.0%
ACCGAAAAAACTCGAAAGAA+TGG - chr4_4:2833667-2833686 None:intergenic 35.0%
!!! ATTCTTTCGAGTTTTTTCGG+TGG + chr4_4:2833666-2833685 Msa0663900:three_prime_UTR 35.0%
!!! TTCTTTCGAGTTTTTTCGGT+GGG + chr4_4:2833667-2833686 Msa0663900:three_prime_UTR 35.0%
GTACAACGACTTGAGAAAAA+TGG - chr4_4:2833701-2833720 None:intergenic 35.0%
GCAAAAGCAAAGGTGAAAAG+CGG + chr4_4:2829765-2829784 Msa0663900:CDS 40.0%
CCTCTGTTCATAAGAAACCA+TGG - chr4_4:2829891-2829910 None:intergenic 40.0%
CCATGGTTTCTTATGAACAG+AGG + chr4_4:2829888-2829907 Msa0663900:CDS 40.0%
!! GGTTCAATTTTAACCCCCTT+GGG - chr4_4:2830390-2830409 None:intergenic 40.0%
!! AGGTTCAATTTTAACCCCCT+TGG - chr4_4:2830391-2830410 None:intergenic 40.0%
CAAACACGCAAAACACTTGA+TGG + chr4_4:2830420-2830439 Msa0663900:intron 40.0%
! TTCTTCGGGCAATTCTAGTT+TGG + chr4_4:2830525-2830544 Msa0663900:intron 40.0%
! CTTTTCAACCCAAGGTCAAA+GGG - chr4_4:2830585-2830604 None:intergenic 40.0%
! CCAAGCCTTTTTCCATTTGT+CGG + chr4_4:2830762-2830781 Msa0663900:intron 40.0%
! CAAGCCTTTTTCCATTTGTC+GGG + chr4_4:2830763-2830782 Msa0663900:intron 40.0%
TAGTCCCGACAAATGGAAAA+AGG - chr4_4:2830770-2830789 None:intergenic 40.0%
ACACAACAATCACTAGAGGT+AGG - chr4_4:2830905-2830924 None:intergenic 40.0%
AAGGACACAACAATCACTAG+AGG - chr4_4:2830909-2830928 None:intergenic 40.0%
CCTACATATCGATGCTTCAA+CGG + chr4_4:2830941-2830960 Msa0663900:intron 40.0%
CTACATATCGATGCTTCAAC+GGG + chr4_4:2830942-2830961 Msa0663900:intron 40.0%
!! ATGTTGCAGCGTCGATATAT+AGG - chr4_4:2830972-2830991 None:intergenic 40.0%
ATTCAAGCTCACACTAAGAC+CGG + chr4_4:2831151-2831170 Msa0663900:intron 40.0%
!! AAGAAGATGGATTAAAGGGG+AGG + chr4_4:2831185-2831204 Msa0663900:intron 40.0%
AGTATGGGTGGAATGTATTG+TGG - chr4_4:2831413-2831432 None:intergenic 40.0%
ACGTACAATAACAGTATGGG+TGG - chr4_4:2831425-2831444 None:intergenic 40.0%
CAAACATACATGAAGGCAAG+TGG - chr4_4:2831565-2831584 None:intergenic 40.0%
CACTTGCCTTCATGTATGTT+TGG + chr4_4:2831563-2831582 Msa0663900:intron 40.0%
!!! ATCAAGGTTTTGGATGAGCT+TGG + chr4_4:2831596-2831615 Msa0663900:intron 40.0%
GGAATTTAATGGCGATTACG+AGG + chr4_4:2831864-2831883 Msa0663900:intron 40.0%
! CGCGCTACTATTGATAACAT+AGG - chr4_4:2832080-2832099 None:intergenic 40.0%
ATTCGCAAACCCATTTCTTC+TGG + chr4_4:2832347-2832366 Msa0663900:intron 40.0%
TACAACAATGCAGCTGTACA+GGG - chr4_4:2833264-2833283 None:intergenic 40.0%
ATACAACAATGCAGCTGTAC+AGG - chr4_4:2833265-2833284 None:intergenic 40.0%
AACTCATTGTCTCCAAGTCT+CGG - chr4_4:2833355-2833374 None:intergenic 40.0%
TTGAGCTTATGTTTCCTTGC+AGG + chr4_4:2833470-2833489 Msa0663900:intron 40.0%
! GGCTTGTTTGATAGAGCAGT+AGG + chr4_4:2829704-2829723 Msa0663900:five_prime_UTR 45.0%
GAGCAACGAAGCAAAAGCAA+AGG + chr4_4:2829755-2829774 Msa0663900:CDS 45.0%
!! GAGAAGAAGCATGTTTTCGC+TGG + chr4_4:2829834-2829853 Msa0663900:CDS 45.0%
!!! CTGCCGTTTTTTCTGTACCA+TGG + chr4_4:2829871-2829890 Msa0663900:CDS 45.0%
! CCTCGAGCAAAAGGTATGTT+TGG - chr4_4:2830239-2830258 None:intergenic 45.0%
! CCAAACATACCTTTTGCTCG+AGG + chr4_4:2830236-2830255 Msa0663900:intron 45.0%
! ACATACCTTTTGCTCGAGGT+TGG + chr4_4:2830240-2830259 Msa0663900:intron 45.0%
AAAGTCCAACCTCGAGCAAA+AGG - chr4_4:2830248-2830267 None:intergenic 45.0%
!! CCAATTACAGTGGGCTAGTT+TGG - chr4_4:2830293-2830312 None:intergenic 45.0%
CCAAACTAGCCCACTGTAAT+TGG + chr4_4:2830290-2830309 Msa0663900:intron 45.0%
!! CAATTTTAACCCCCTTGGGA+TGG - chr4_4:2830386-2830405 None:intergenic 45.0%
TTGCGTGTTTGATTCACGTC+AGG - chr4_4:2830411-2830430 None:intergenic 45.0%
! AGTTTGGCTCGTCATTTACC+TGG + chr4_4:2830541-2830560 Msa0663900:intron 45.0%
!! AAGACTGGTGAAAGGTATCC+AGG - chr4_4:2830562-2830581 None:intergenic 45.0%
TCAAAGGGAAGACTGGTGAA+AGG - chr4_4:2830570-2830589 None:intergenic 45.0%
! CCTTTTCAACCCAAGGTCAA+AGG - chr4_4:2830586-2830605 None:intergenic 45.0%
!! CCTTTGACCTTGGGTTGAAA+AGG + chr4_4:2830583-2830602 Msa0663900:intron 45.0%
! GGGTTTTCCTTTTCAACCCA+AGG - chr4_4:2830593-2830612 None:intergenic 45.0%
CGAGGCTATCAATCAAGCTA+GGG - chr4_4:2830613-2830632 None:intergenic 45.0%
TCGAGGCTATCAATCAAGCT+AGG - chr4_4:2830614-2830633 None:intergenic 45.0%
GTAGATTGAAAGTCAGGGTC+AGG + chr4_4:2830723-2830742 Msa0663900:intron 45.0%
CCGACAAATGGAAAAAGGCT+TGG - chr4_4:2830765-2830784 None:intergenic 45.0%
ATACAGCTAGTCCCGACAAA+TGG - chr4_4:2830777-2830796 None:intergenic 45.0%
!! CCGTTGAAGCATCGATATGT+AGG - chr4_4:2830944-2830963 None:intergenic 45.0%
TCACACTAAGACCGGTTGTA+AGG + chr4_4:2831159-2831178 Msa0663900:intron 45.0%
TCCAAAACCTTGATAGACGC+TGG - chr4_4:2831590-2831609 None:intergenic 45.0%
CGACTCAGAAGTGATAAACC+TGG - chr4_4:2831743-2831762 None:intergenic 45.0%
GTTAGTGGAGTGGAGTAGTT+AGG + chr4_4:2832050-2832069 Msa0663900:intron 45.0%
AGTGATTGTGCTGCAATTCG+CGG - chr4_4:2832196-2832215 None:intergenic 45.0%
TGTTACTCGTTCGCCTTCTA+GGG + chr4_4:2832215-2832234 Msa0663900:intron 45.0%
ACAACTGCGTAGCTTCGTAT+AGG - chr4_4:2832469-2832488 None:intergenic 45.0%
TCTTCTTCACACACAGAAGG+AGG - chr4_4:2832518-2832537 None:intergenic 45.0%
CAGTCTTCTTCACACACAGA+AGG - chr4_4:2832521-2832540 None:intergenic 45.0%
!!! GCTGTAGCAGTTTTGGTGTT+CGG + chr4_4:2832800-2832819 Msa0663900:intron 45.0%
ATCCGTGATTGGCAACATAG+AGG + chr4_4:2832837-2832856 Msa0663900:intron 45.0%
AGCCTCTATGTTGCCAATCA+CGG - chr4_4:2832842-2832861 None:intergenic 45.0%
CGAGATCATTTGGAAGAAGC+AGG - chr4_4:2833569-2833588 None:intergenic 45.0%
!!! TTCGAGTTTTTTCGGTGGGA+TGG + chr4_4:2833671-2833690 Msa0663900:three_prime_UTR 45.0%
! AAAAGCGGCGAAGGTGGATT+TGG + chr4_4:2829780-2829799 Msa0663900:CDS 50.0%
! GCGAAGGTGGATTTGGATCA+AGG + chr4_4:2829787-2829806 Msa0663900:CDS 50.0%
TCGAACCTGAGACCTTTGAG+AGG + chr4_4:2830325-2830344 Msa0663900:intron 50.0%
TTGGAGTGTGCTCCTCTCAA+AGG - chr4_4:2830340-2830359 None:intergenic 50.0%
!! GTGGTGTTGGCTTGAGACTT+TGG - chr4_4:2830359-2830378 None:intergenic 50.0%
GCAGCTTGAGTCCTTGACTA+AGG + chr4_4:2830485-2830504 Msa0663900:intron 50.0%
ACCAGTCTTCCCTTTGACCT+TGG + chr4_4:2830573-2830592 Msa0663900:intron 50.0%
CCAGTCTTCCCTTTGACCTT+GGG + chr4_4:2830574-2830593 Msa0663900:intron 50.0%
!!! CGGTTTCCCCCTTTTTTGTC+AGG - chr4_4:2831329-2831348 None:intergenic 50.0%
TCTATGACCGTAGACTGTCC+TGG + chr4_4:2831387-2831406 Msa0663900:intron 50.0%
ATTGTGGCCAGGACAGTCTA+CGG - chr4_4:2831397-2831416 None:intergenic 50.0%
GCTGGCCCAAACATACATGA+AGG - chr4_4:2831572-2831591 None:intergenic 50.0%
! GCCAGCGTCTATCAAGGTTT+TGG + chr4_4:2831586-2831605 Msa0663900:intron 50.0%
ACTTCTGAGTCGAACCACGA+TGG + chr4_4:2831751-2831770 Msa0663900:intron 50.0%
! CGGTCTAACTGATTCCATCG+TGG - chr4_4:2831768-2831787 None:intergenic 50.0%
ATGGCGATTACGAGGCAGTT+AGG + chr4_4:2831872-2831891 Msa0663900:intron 50.0%
TCCTGTGAGCCACATTCAGT+AGG + chr4_4:2832156-2832175 Msa0663900:intron 50.0%
TCCTACTGAATGTGGCTCAC+AGG - chr4_4:2832160-2832179 None:intergenic 50.0%
TGAGCCACATTCAGTAGGAG+TGG + chr4_4:2832161-2832180 Msa0663900:intron 50.0%
AACGCCACTCCTACTGAATG+TGG - chr4_4:2832168-2832187 None:intergenic 50.0%
CTGTTACTCGTTCGCCTTCT+AGG + chr4_4:2832214-2832233 Msa0663900:intron 50.0%
TTTCACCCGCAAACCCTAGA+AGG - chr4_4:2832231-2832250 None:intergenic 50.0%
AGCTTTGCGCAGGGAAACAA+AGG - chr4_4:2832429-2832448 None:intergenic 50.0%
! CAGCTTTGTAGCTTTGCGCA+GGG - chr4_4:2832438-2832457 None:intergenic 50.0%
! ACAGCTTTGTAGCTTTGCGC+AGG - chr4_4:2832439-2832458 None:intergenic 50.0%
ACTGCGTAGCTTCGTATAGG+AGG - chr4_4:2832466-2832485 None:intergenic 50.0%
! ATCCCTCGCTGTAGCAGTTT+TGG + chr4_4:2832793-2832812 Msa0663900:intron 50.0%
CACCAAAACTGCTACAGCGA+GGG - chr4_4:2832798-2832817 None:intergenic 50.0%
ACACCAAAACTGCTACAGCG+AGG - chr4_4:2832799-2832818 None:intergenic 50.0%
!!! GAGTTTTTTCGGTGGGATGG+AGG + chr4_4:2833674-2833693 Msa0663900:three_prime_UTR 50.0%
GCAAAGGTGAAAAGCGGCGA+AGG + chr4_4:2829771-2829790 Msa0663900:CDS 55.0%
AAGGTGAAAAGCGGCGAAGG+TGG + chr4_4:2829774-2829793 Msa0663900:CDS 55.0%
GTGCTCCTCTCAAAGGTCTC+AGG - chr4_4:2830333-2830352 None:intergenic 55.0%
AGTCTCAAGCCAACACCACC+AGG + chr4_4:2830360-2830379 Msa0663900:intron 55.0%
CCCAAGGTCAAAGGGAAGAC+TGG - chr4_4:2830577-2830596 None:intergenic 55.0%
GGGTGGAATGTATTGTGGCC+AGG - chr4_4:2831408-2831427 None:intergenic 55.0%
GTTTGGGCCAGCGTCTATCA+AGG + chr4_4:2831580-2831599 Msa0663900:intron 55.0%
TTCAGTAGGAGTGGCGTTCG+TGG + chr4_4:2832170-2832189 Msa0663900:intron 55.0%
!! CGTTCGCCTTCTAGGGTTTG+CGG + chr4_4:2832222-2832241 Msa0663900:intron 55.0%
!! GTTCGCCTTCTAGGGTTTGC+GGG + chr4_4:2832223-2832242 Msa0663900:intron 55.0%
! TCCGTGCTGCTATCCGTGAT+TGG + chr4_4:2832826-2832845 Msa0663900:intron 55.0%
GCCAATCACGGATAGCAGCA+CGG - chr4_4:2832830-2832849 None:intergenic 55.0%
GGGTTAGAAACTGGGCAGAG+AGG + chr4_4:2833204-2833223 Msa0663900:intron 55.0%
! TTGGGATGGCCTGGTGGTGT+TGG - chr4_4:2830372-2830391 None:intergenic 60.0%
AACACCACCAGGCCATCCCA+AGG + chr4_4:2830371-2830390 Msa0663900:intron 60.0%
ACACCACCAGGCCATCCCAA+GGG + chr4_4:2830372-2830391 Msa0663900:intron 60.0%
TTAACCCCCTTGGGATGGCC+TGG - chr4_4:2830381-2830400 None:intergenic 60.0%
CACCACCAGGCCATCCCAAG+GGG + chr4_4:2830373-2830392 Msa0663900:intron 65.0%
ACCACCAGGCCATCCCAAGG+GGG + chr4_4:2830374-2830393 Msa0663900:intron 65.0%
ACCCCCTTGGGATGGCCTGG+TGG - chr4_4:2830378-2830397 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 2829693 2833914 2829693 ID=Msa0663900;Name=Msa0663900
chr4_4 mRNA 2829693 2833914 2829693 ID=Msa0663900-mRNA-1;Parent=Msa0663900;Name=Msa0663900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=60|1|1|1|1|1|2|331|82
chr4_4 exon 2829693 2829909 2829693 ID=Msa0663900-mRNA-1:exon:814;Parent=Msa0663900-mRNA-1
chr4_4 exon 2833492 2833914 2833492 ID=Msa0663900-mRNA-1:exon:815;Parent=Msa0663900-mRNA-1
chr4_4 five_prime_UTR 2829693 2829752 2829693 ID=Msa0663900-mRNA-1:five_prime_utr;Parent=Msa0663900-mRNA-1
chr4_4 CDS 2829753 2829909 2829753 ID=Msa0663900-mRNA-1:cds;Parent=Msa0663900-mRNA-1
chr4_4 CDS 2833492 2833583 2833492 ID=Msa0663900-mRNA-1:cds;Parent=Msa0663900-mRNA-1
chr4_4 three_prime_UTR 2833584 2833914 2833584 ID=Msa0663900-mRNA-1:three_prime_utr;Parent=Msa0663900-mRNA-1
Gene Sequence

>Msa0663900

ATGAGCAACGAAGCAAAAGCAAAGGTGAAAAGCGGCGAAGGTGGATTTGGATCAAGGTTGAATCAAATTCTATATAGCGGTGAGAAGAAGCATGTTTTCGCTGGCTTAGTTCTCATCACTGCCGTTTTTTCTGTACCATGGTTTCTTATGAACAGAGGATCAAAACATCAATCTCATCAAGATTACTTGGAAAAAGCTAATAAAGCAAGGAGCGAAAGACTCTCGTCAAGTCCTGCTTCTTCCAAATGA

Protein sequence

>Msa0663900

MSNEAKAKVKSGEGGFGSRLNQILYSGEKKHVFAGLVLITAVFSVPWFLMNRGSKHQSHQDYLEKANKARSERLSSSPASSK*