Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844520 | AES96456.2 | 79.218 | 486 | 64 | 1 | 1 | 449 | 1 | 486 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844520 | sp|O49169|EF1A_MANES | 73.441 | 433 | 115 | 0 | 13 | 445 | 3 | 435 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844520 | G7K8A4 | 79.218 | 486 | 64 | 1 | 1 | 449 | 1 | 486 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0844450 | Msa0844520 | 0.802771 | 4.790301e-49 | -8.615850e-47 |
| Msa0844460 | Msa0844520 | 0.935591 | 6.661158e-97 | -8.615850e-47 |
| Msa0844470 | Msa0844520 | 0.805166 | 1.522272e-49 | -8.615850e-47 |
| Msa0844510 | Msa0844520 | 0.912751 | 1.359279e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844520 | MtrunA17_Chr5g0415391 | 85.500 | 400 | 58 | 0 | 49 | 448 | 1 | 400 | 0.0 | 712 |
| Msa0844520 | MtrunA17_Chr1g0200121 | 74.827 | 433 | 109 | 0 | 13 | 445 | 3 | 435 | 0.0 | 667 |
| Msa0844520 | MtrunA17_Chr1g0200071 | 74.827 | 433 | 109 | 0 | 13 | 445 | 3 | 435 | 0.0 | 667 |
| Msa0844520 | MtrunA17_Chr1g0200091 | 74.827 | 433 | 109 | 0 | 13 | 445 | 3 | 435 | 0.0 | 667 |
| Msa0844520 | MtrunA17_Chr4g0005781 | 73.793 | 435 | 114 | 0 | 13 | 447 | 3 | 437 | 0.0 | 666 |
| Msa0844520 | MtrunA17_Chr6g0458111 | 72.979 | 433 | 117 | 0 | 13 | 445 | 3 | 435 | 0.0 | 657 |
| Msa0844520 | MtrunA17_Chr6g0458091 | 72.979 | 433 | 117 | 0 | 13 | 445 | 3 | 435 | 0.0 | 657 |
| Msa0844520 | MtrunA17_Chr8g0340771 | 71.659 | 434 | 121 | 1 | 13 | 444 | 3 | 436 | 0.0 | 628 |
| Msa0844520 | MtrunA17_Chr1g0204031 | 60.073 | 551 | 198 | 7 | 13 | 546 | 3 | 548 | 0.0 | 626 |
| Msa0844520 | MtrunA17_Chr1g0193591 | 69.863 | 438 | 132 | 0 | 13 | 450 | 3 | 440 | 0.0 | 624 |
| Msa0844520 | MtrunA17_Chr1g0156421 | 67.202 | 436 | 143 | 0 | 13 | 448 | 3 | 438 | 0.0 | 603 |
| Msa0844520 | MtrunA17_Chr1g0150331 | 69.266 | 436 | 105 | 2 | 13 | 445 | 3 | 412 | 0.0 | 597 |
| Msa0844520 | MtrunA17_Chr1g0196251 | 60.050 | 403 | 133 | 2 | 14 | 415 | 5 | 380 | 3.35e-166 | 477 |
| Msa0844520 | MtrunA17_Chr8g0336511 | 66.873 | 323 | 106 | 1 | 15 | 336 | 70 | 392 | 1.57e-151 | 440 |
| Msa0844520 | MtrunA17_Chr2g0319341 | 65.244 | 328 | 112 | 1 | 112 | 437 | 1 | 328 | 3.95e-150 | 438 |
| Msa0844520 | MtrunA17_Chr2g0298371 | 59.692 | 325 | 112 | 2 | 112 | 434 | 1 | 308 | 4.88e-129 | 379 |
| Msa0844520 | MtrunA17_Chr2g0318291 | 68.636 | 220 | 66 | 2 | 15 | 233 | 7 | 224 | 9.29e-99 | 298 |
| Msa0844520 | MtrunA17_Chr8g0340371 | 60.084 | 238 | 92 | 2 | 13 | 249 | 3 | 238 | 5.69e-93 | 284 |
| Msa0844520 | MtrunA17_Chr1g0210931 | 54.710 | 276 | 75 | 3 | 165 | 439 | 1 | 227 | 8.88e-86 | 266 |
| Msa0844520 | MtrunA17_Chr8g0380091 | 37.176 | 425 | 259 | 7 | 17 | 436 | 275 | 696 | 2.75e-83 | 273 |
| Msa0844520 | MtrunA17_Chr6g0483121 | 35.514 | 428 | 266 | 6 | 15 | 436 | 89 | 512 | 7.85e-81 | 262 |
| Msa0844520 | MtrunA17_Chr1g0204041 | 71.605 | 162 | 45 | 1 | 13 | 173 | 3 | 164 | 1.48e-76 | 239 |
| Msa0844520 | MtrunA17_Chr8g0392641 | 34.419 | 430 | 272 | 6 | 11 | 434 | 140 | 565 | 1.11e-74 | 247 |
| Msa0844520 | MtrunA17_Chr2g0318281 | 63.636 | 187 | 68 | 0 | 253 | 439 | 5 | 191 | 7.18e-74 | 234 |
| Msa0844520 | MtrunA17_Chr1g0200111 | 59.659 | 176 | 61 | 1 | 274 | 439 | 1 | 176 | 1.10e-64 | 209 |
| Msa0844520 | MtrunA17_Chr1g0156411 | 68.571 | 140 | 44 | 0 | 16 | 155 | 10 | 149 | 7.01e-63 | 203 |
| Msa0844520 | MtrunA17_Chr8g0340361 | 55.801 | 181 | 64 | 3 | 274 | 439 | 1 | 180 | 4.17e-57 | 189 |
| Msa0844520 | MtrunA17_Chr4g0026961 | 52.809 | 178 | 71 | 3 | 221 | 395 | 45 | 212 | 1.14e-47 | 165 |
| Msa0844520 | MtrunA17_Chr2g0298381 | 76.842 | 95 | 22 | 0 | 15 | 109 | 5 | 99 | 7.72e-44 | 150 |
| Msa0844520 | MtrunA17_Chr8g0341021 | 71.287 | 101 | 29 | 0 | 13 | 113 | 4 | 104 | 9.36e-43 | 148 |
| Msa0844520 | MtrunA17_Chr8g0341041 | 38.356 | 219 | 72 | 4 | 223 | 441 | 2 | 157 | 1.07e-35 | 131 |
| Msa0844520 | MtrunA17_Chr7g0259481 | 28.802 | 434 | 257 | 14 | 13 | 439 | 59 | 447 | 1.97e-34 | 135 |
| Msa0844520 | MtrunA17_Chr2g0319351 | 78.082 | 73 | 16 | 0 | 15 | 87 | 5 | 77 | 1.18e-31 | 117 |
| Msa0844520 | MtrunA17_Chr3g0116821 | 28.667 | 450 | 247 | 17 | 10 | 436 | 86 | 484 | 1.06e-30 | 125 |
| Msa0844520 | MtrunA17_Chr1g0211481 | 67.089 | 79 | 26 | 0 | 15 | 93 | 4 | 82 | 9.35e-29 | 109 |
| Msa0844520 | MtrunA17_Chr2g0287231 | 30.992 | 242 | 133 | 8 | 17 | 254 | 16 | 227 | 3.01e-25 | 104 |
| Msa0844520 | MtrunA17_Chr1g0200101 | 68.750 | 64 | 20 | 0 | 183 | 246 | 50 | 113 | 2.01e-22 | 92.8 |
| Msa0844520 | MtrunA17_Chr1g0200101 | 57.143 | 49 | 21 | 0 | 31 | 79 | 2 | 50 | 2.32e-11 | 61.2 |
| Msa0844520 | MtrunA17_Chr7g0261801 | 63.636 | 66 | 21 | 1 | 165 | 230 | 1 | 63 | 2.88e-18 | 79.7 |
| Msa0844520 | MtrunA17_Chr3g0130991 | 25.915 | 328 | 170 | 12 | 19 | 330 | 85 | 355 | 5.65e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844520 | AT1G07920.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT1G07940.4 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT1G07940.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT1G07940.2 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT1G07940.3 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT5G60390.3 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT5G60390.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT5G60390.2 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT1G07930.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844520 | AT1G07930.2 | 75.494 | 253 | 62 | 0 | 13 | 265 | 3 | 255 | 1.20e-135 | 399 |
| Msa0844520 | AT1G07930.2 | 68.571 | 105 | 33 | 0 | 341 | 445 | 254 | 358 | 1.23e-42 | 157 |
| Msa0844520 | AT5G10630.1 | 34.590 | 451 | 266 | 10 | 1 | 439 | 230 | 663 | 1.06e-80 | 266 |
| Msa0844520 | AT5G10630.5 | 34.590 | 451 | 266 | 10 | 1 | 439 | 231 | 664 | 1.08e-80 | 266 |
| Msa0844520 | AT5G10630.2 | 34.590 | 451 | 266 | 10 | 1 | 439 | 231 | 664 | 1.08e-80 | 266 |
| Msa0844520 | AT5G10630.3 | 34.590 | 451 | 266 | 10 | 1 | 439 | 301 | 734 | 3.90e-80 | 266 |
| Msa0844520 | AT5G10630.4 | 34.590 | 451 | 266 | 10 | 1 | 439 | 306 | 739 | 6.10e-80 | 266 |
| Msa0844520 | AT1G18070.1 | 32.723 | 437 | 286 | 5 | 3 | 434 | 87 | 520 | 8.25e-77 | 252 |
| Msa0844520 | AT1G18070.2 | 32.723 | 437 | 286 | 5 | 3 | 434 | 87 | 520 | 8.25e-77 | 252 |
| Msa0844520 | AT1G18070.3 | 32.438 | 447 | 285 | 6 | 3 | 434 | 87 | 531 | 6.57e-74 | 245 |
| Msa0844520 | AT1G35550.1 | 62.626 | 99 | 37 | 0 | 347 | 445 | 3 | 101 | 4.43e-36 | 130 |
| Msa0844520 | AT4G20360.1 | 28.821 | 458 | 242 | 15 | 10 | 439 | 73 | 474 | 2.39e-33 | 133 |
| Msa0844520 | AT4G20360.2 | 28.821 | 458 | 242 | 15 | 10 | 439 | 73 | 474 | 2.39e-33 | 133 |
| Msa0844520 | AT4G02930.1 | 28.506 | 435 | 258 | 15 | 13 | 439 | 63 | 452 | 8.66e-33 | 131 |
Find 163 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCTTTCTTCAAGAATT+TGG | 0.057481 | 5_4:+23011428 | None:intergenic |
| ATACACCCGTTTGAATAATT+TGG | 0.152520 | 5_4:-23008658 | Msa0844520:CDS |
| CATATTAACATTGTGGTTAT+TGG | 0.173948 | 5_4:-23012632 | Msa0844520:CDS |
| TTCACGGATCTGACCATTAT+TGG | 0.182143 | 5_4:+23012268 | None:intergenic |
| ACAAAGAACAATGATGTATT+TGG | 0.187721 | 5_4:-23008442 | Msa0844520:CDS |
| GATTCCACTCATGCTGGTTT+TGG | 0.235449 | 5_4:-23012302 | Msa0844520:CDS |
| AGCCCTCTACTAAACATATT+TGG | 0.259900 | 5_4:-23011956 | Msa0844520:CDS |
| AAGTGAGTGGCCTCCTTGGC+TGG | 0.298507 | 5_4:+23011603 | None:intergenic |
| CTTCACCTTGCAGGCCAGTT+GGG | 0.319600 | 5_4:+23011757 | None:intergenic |
| TCACCTTTCTTCAAGAATTT+GGG | 0.321325 | 5_4:+23011429 | None:intergenic |
| TTCATTAAGAACATGATTAC+TGG | 0.322781 | 5_4:-23012359 | Msa0844520:CDS |
| GATCTTTCCGAGGCCCTTCC+TGG | 0.323503 | 5_4:-23011708 | Msa0844520:CDS |
| TTCCTCTGATTCTCTCTTCA+AGG | 0.327507 | 5_4:+23008264 | None:intergenic |
| GCCTCTCCGATTACCACTTC+AGG | 0.334259 | 5_4:-23011868 | Msa0844520:CDS |
| CACTTTCTCTTCAAGCTGTC+AGG | 0.334405 | 5_4:+23007716 | None:intergenic |
| CTTCAATTTGTTCCCATCTC+TGG | 0.336935 | 5_4:-23012002 | Msa0844520:CDS |
| CTGGCAGAGGAAGCAGAGTT+TGG | 0.337313 | 5_4:-23007632 | Msa0844520:three_prime_UTR |
| ATAGTTATACCGGTCACTTC+TGG | 0.341278 | 5_4:-23007651 | Msa0844520:exon |
| CAATGCAAATTTGTATCTAC+TGG | 0.342456 | 5_4:-23008687 | Msa0844520:CDS |
| GTCTACAAGATTGGAGGAAT+TGG | 0.348403 | 5_4:-23011843 | Msa0844520:CDS |
| GGAGCCGGTATTTCCAATAA+TGG | 0.356707 | 5_4:-23012281 | Msa0844520:CDS |
| CGCGGTCTCTTCAAGCTGTC+AGG | 0.357135 | 5_4:+23007680 | None:intergenic |
| GCTCTCCTTGCTTACTCTCT+TGG | 0.359046 | 5_4:-23012242 | Msa0844520:CDS |
| ATAGCCAACCTTCATCAAAA+AGG | 0.369621 | 5_4:+23012037 | None:intergenic |
| GCCTCTTAGGCTCTTTGATT+CGG | 0.381289 | 5_4:+23011901 | None:intergenic |
| CTCCTTGGCTGGGTGATGCT+TGG | 0.382356 | 5_4:+23011614 | None:intergenic |
| GCAAAAGTCAACACCATTCC+AGG | 0.385507 | 5_4:+23011780 | None:intergenic |
| TTCTTCATACCTACGCTTGA+AGG | 0.390441 | 5_4:+23012079 | None:intergenic |
| GGTCATTTGTTCTACAAGCT+TGG | 0.401050 | 5_4:-23012578 | Msa0844520:CDS |
| AAGACGTCACTTCACCTTGC+AGG | 0.402363 | 5_4:+23011748 | None:intergenic |
| ATACCTACGCTTGAAGGAAA+AGG | 0.403847 | 5_4:+23012085 | None:intergenic |
| CACCCTGGTCGGATTGGAAA+TGG | 0.421161 | 5_4:-23011555 | Msa0844520:CDS |
| GGAACAAATTGAAGTTCGTC+TGG | 0.423506 | 5_4:+23012011 | None:intergenic |
| AACAATTATCCTAGTGAAAG+TGG | 0.427073 | 5_4:-23011273 | Msa0844520:intron |
| CTTAATGAAATCCCTGTGTC+CGG | 0.429384 | 5_4:+23012373 | None:intergenic |
| TACCTCCAAATTATTCAAAC+GGG | 0.435321 | 5_4:+23008653 | None:intergenic |
| TCTTGACAGATGGATGCCTT+TGG | 0.440301 | 5_4:-23012110 | Msa0844520:intron |
| AGGCATTTCAAAGATGGAAA+TGG | 0.444529 | 5_4:-23012555 | Msa0844520:CDS |
| CTGTGGCTGTAGGATGTGTT+AGG | 0.449006 | 5_4:-23011818 | Msa0844520:CDS |
| TACCTACGCTTGAAGGAAAA+GGG | 0.449319 | 5_4:+23012086 | None:intergenic |
| GCTTGGAGGCATTTCAAAGA+TGG | 0.452315 | 5_4:-23012561 | Msa0844520:CDS |
| ACTTCACCTTGCAGGCCAGT+TGG | 0.456497 | 5_4:+23011756 | None:intergenic |
| CTTCAGGGTGTCTACAAGAT+TGG | 0.458119 | 5_4:-23011852 | Msa0844520:CDS |
| CTCAACCACCATGGGCTTGG+TGG | 0.460687 | 5_4:+23011383 | None:intergenic |
| ACACCTCCCACATTGCTGTC+AGG | 0.465569 | 5_4:-23011509 | Msa0844520:CDS |
| ATCGGAGAAGTTTACCTTGA+AGG | 0.465772 | 5_4:+23013220 | None:intergenic |
| ACCGAATCAAAGAGCCTAAG+AGG | 0.467194 | 5_4:-23011902 | Msa0844520:CDS |
| ATCGTTGATTCCACTCATGC+TGG | 0.468387 | 5_4:-23012308 | Msa0844520:CDS |
| TTACCTCCAAATTATTCAAA+CGG | 0.469205 | 5_4:+23008652 | None:intergenic |
| TTAATGAAATCCCTGTGTCC+GGG | 0.473933 | 5_4:+23012374 | None:intergenic |
| ATCTCCCTTAAAACCAGAGA+TGG | 0.476884 | 5_4:+23011989 | None:intergenic |
| GATGATAGTGCAGCGGTACT+TGG | 0.476978 | 5_4:+23012403 | None:intergenic |
| AGACACCCTGAAGTGGTAAT+CGG | 0.478400 | 5_4:+23011862 | None:intergenic |
| ACGGGTCACCCTGGTCGGAT+TGG | 0.478814 | 5_4:-23011561 | Msa0844520:CDS |
| CTGACCATTATTGGAAATAC+CGG | 0.479403 | 5_4:+23012277 | None:intergenic |
| TCTGGGAAGTCAACCACTGC+TGG | 0.494688 | 5_4:-23012599 | Msa0844520:CDS |
| TAAGAAGAGCACAATCAGCT+TGG | 0.494803 | 5_4:+23012330 | None:intergenic |
| GTTATTGGTCATGTCAACTC+TGG | 0.498667 | 5_4:-23012617 | Msa0844520:CDS |
| ACTCTCAACCACCATGGGCT+TGG | 0.499650 | 5_4:+23011380 | None:intergenic |
| CACCCGTTTGAATAATTTGG+AGG | 0.500005 | 5_4:-23008655 | Msa0844520:intron |
| CCTCTCCGATTACCACTTCA+GGG | 0.501098 | 5_4:-23011867 | Msa0844520:CDS |
| CATTTGTTCTACAAGCTTGG+AGG | 0.502015 | 5_4:-23012575 | Msa0844520:CDS |
| GGCTTGTCTGATAGCCTCTT+AGG | 0.504279 | 5_4:+23011888 | None:intergenic |
| TCAGATGGCAAAATCAATGA+TGG | 0.505168 | 5_4:-23008308 | Msa0844520:intron |
| TACCAAATATGTTTAGTAGA+GGG | 0.505176 | 5_4:+23011954 | None:intergenic |
| GGCCCTTCCTGGTGATAATG+TGG | 0.507215 | 5_4:-23011697 | Msa0844520:CDS |
| GTTTGCTAAGCTTCTTGCCA+AGG | 0.508288 | 5_4:-23011487 | Msa0844520:CDS |
| TTTCAACGCAGCGTCCTTCA+AGG | 0.511399 | 5_4:-23013234 | Msa0844520:intron |
| TGTAAAGTGAGTGGCCTCCT+TGG | 0.513035 | 5_4:+23011599 | None:intergenic |
| TCATTAAGAACATGATTACT+GGG | 0.515556 | 5_4:-23012358 | Msa0844520:CDS |
| ATTATCACCAGGAAGGGCCT+CGG | 0.515616 | 5_4:+23011701 | None:intergenic |
| AAGAAGAGCACAATCAGCTT+GGG | 0.517444 | 5_4:+23012331 | None:intergenic |
| AGGAGTAATGGATAAAGAAG+AGG | 0.522331 | 5_4:-23012687 | Msa0844520:exon |
| TGGGTGATGCTTGGAGTTTG+AGG | 0.523276 | 5_4:+23011623 | None:intergenic |
| AGTGAGTGGCCTCCTTGGCT+GGG | 0.526938 | 5_4:+23011604 | None:intergenic |
| GAGGTGTGGCAGTAAAGAAC+AGG | 0.530254 | 5_4:+23011525 | None:intergenic |
| CTCAAGGCTGAGCGCGAAAG+AGG | 0.530816 | 5_4:-23012464 | Msa0844520:CDS |
| GAGCCCAAATTCTTGAAGAA+AGG | 0.535406 | 5_4:-23011432 | Msa0844520:CDS |
| TTTGCCCCAACTGGCCTGCA+AGG | 0.538006 | 5_4:-23011762 | Msa0844520:CDS |
| AAAGGTTCATATTAACATTG+TGG | 0.540926 | 5_4:-23012639 | Msa0844520:CDS |
| TAGCCATTTCCAATCCGACC+AGG | 0.541629 | 5_4:+23011552 | None:intergenic |
| TTCGGTTAAGAGCTTCAAGA+AGG | 0.544122 | 5_4:+23011919 | None:intergenic |
| CAGGGTGTCTACAAGATTGG+AGG | 0.544955 | 5_4:-23011849 | Msa0844520:CDS |
| GTACCAAATATGTTTAGTAG+AGG | 0.546352 | 5_4:+23011953 | None:intergenic |
| ATAAGCTTGAGTCACTTCGC+AGG | 0.546363 | 5_4:-23010027 | Msa0844520:CDS |
| ACTTAAAGTAGAGCTTGATA+AGG | 0.546693 | 5_4:-23008416 | Msa0844520:intron |
| ACATCTCAAGTTATCATCAC+GGG | 0.546855 | 5_4:-23011579 | Msa0844520:CDS |
| CTTCCTCTGCCAGAAGTGAC+CGG | 0.547688 | 5_4:+23007642 | None:intergenic |
| AATGCAAATTTGTATCTACT+GGG | 0.547814 | 5_4:-23008686 | Msa0844520:CDS |
| TTCACCTTGCAGGCCAGTTG+GGG | 0.547998 | 5_4:+23011758 | None:intergenic |
| TCAACCACCATGGGCTTGGT+GGG | 0.551057 | 5_4:+23011384 | None:intergenic |
| GCATATCTCTGACAATAAAA+CGG | 0.553611 | 5_4:+23011334 | None:intergenic |
| AAAATCAATGATGGAACTCA+AGG | 0.554509 | 5_4:-23008299 | Msa0844520:CDS |
| AAGCAAGGAGAGCATGTTCA+CGG | 0.554818 | 5_4:+23012252 | None:intergenic |
| TGCAAATTTGTATCTACTGG+GGG | 0.558734 | 5_4:-23008684 | Msa0844520:CDS |
| ATACCGGTCACTTCTGGCAG+AGG | 0.559989 | 5_4:-23007645 | Msa0844520:three_prime_UTR |
| TGCACTATCATCGATGCCCC+CGG | 0.562583 | 5_4:-23012392 | Msa0844520:CDS |
| ACAATAAAACGGCCAAGTGA+AGG | 0.563719 | 5_4:+23011345 | None:intergenic |
| AGCAAACCTGACAGCAATGT+GGG | 0.564417 | 5_4:+23011503 | None:intergenic |
| AGGACTGGTGTCTTGAAACC+TGG | 0.565768 | 5_4:-23011798 | Msa0844520:CDS |
| GTTAAGAGCTTCAAGAAGGG+TGG | 0.567132 | 5_4:+23011923 | None:intergenic |
| TAATGAAATCCCTGTGTCCG+GGG | 0.570266 | 5_4:+23012375 | None:intergenic |
| TGAAGTGACGTCTTTGCAGA+TGG | 0.570747 | 5_4:-23011739 | Msa0844520:CDS |
| GTGTCGAAATAAAGAGCTGA+TGG | 0.574372 | 5_4:-23009996 | Msa0844520:intron |
| GGCTCCAAAACCAGCATGAG+TGG | 0.575911 | 5_4:+23012298 | None:intergenic |
| CGCGGGCAGAATAGTTATAC+CGG | 0.576267 | 5_4:-23007661 | Msa0844520:exon |
| GCTGTAGGATGTGTTAGGAC+TGG | 0.580546 | 5_4:-23011813 | Msa0844520:CDS |
| ATGCGTCGAACTGTGGCTGT+TGG | 0.581560 | 5_4:-23011315 | Msa0844520:CDS |
| AGGATTCATTCAAGTATGCG+TGG | 0.581569 | 5_4:-23012499 | Msa0844520:CDS |
| GCCCTTCCTGGTGATAATGT+GGG | 0.582437 | 5_4:-23011696 | Msa0844520:CDS |
| TCCCACATTATCACCAGGAA+GGG | 0.585065 | 5_4:+23011695 | None:intergenic |
| ATCCTTGAAGAGAGAATCAG+AGG | 0.587146 | 5_4:-23008266 | Msa0844520:CDS |
| TGCTAAGCTTCTTGCCAAGG+TGG | 0.590482 | 5_4:-23011484 | Msa0844520:CDS |
| TCATCACGGGTCACCCTGGT+CGG | 0.593293 | 5_4:-23011566 | Msa0844520:CDS |
| TGACACCAAGAGAGTAAGCA+AGG | 0.593570 | 5_4:+23012237 | None:intergenic |
| GTTATCTTACCACTTTCACT+AGG | 0.595956 | 5_4:+23011264 | None:intergenic |
| TACATCTCAAGTTATCATCA+CGG | 0.596275 | 5_4:-23011580 | Msa0844520:CDS |
| CTCCAAGCATCACCCAGCCA+AGG | 0.596291 | 5_4:-23011616 | Msa0844520:CDS |
| TGACAGCTTGAAGAGACCGC+GGG | 0.598440 | 5_4:-23007678 | Msa0844520:CDS |
| TTATTGGTCATGTCAACTCT+GGG | 0.598528 | 5_4:-23012616 | Msa0844520:CDS |
| GGATTCATTCAAGTATGCGT+GGG | 0.601005 | 5_4:-23012498 | Msa0844520:CDS |
| TCTCCCTTAAAACCAGAGAT+GGG | 0.602080 | 5_4:+23011990 | None:intergenic |
| GTTATCATCACGGGTCACCC+TGG | 0.603187 | 5_4:-23011570 | Msa0844520:CDS |
| TGGTGTCTTGAAACCTGGAA+TGG | 0.603925 | 5_4:-23011793 | Msa0844520:CDS |
| ATCCCACATTATCACCAGGA+AGG | 0.604739 | 5_4:+23011694 | None:intergenic |
| GATGATTCCCACCAAGCCCA+TGG | 0.606444 | 5_4:-23011391 | Msa0844520:CDS |
| ACTAAACATATTTGGTACAA+AGG | 0.606611 | 5_4:-23011948 | Msa0844520:CDS |
| AAATTCTTGAAGAAAGGTGA+TGG | 0.611109 | 5_4:-23011426 | Msa0844520:CDS |
| AGTTTGAGGCAACATAGCCT+CGG | 0.617398 | 5_4:+23011637 | None:intergenic |
| TTCTTGAAGAAAGGTGATGG+TGG | 0.618680 | 5_4:-23011423 | Msa0844520:CDS |
| CTTGAAGGAAAAGGGGCCAA+AGG | 0.620399 | 5_4:+23012094 | None:intergenic |
| GTGGGTTCTTGACAAACTCA+AGG | 0.622484 | 5_4:-23012480 | Msa0844520:CDS |
| TTAAGAGCTTCAAGAAGGGT+GGG | 0.626591 | 5_4:+23011924 | None:intergenic |
| TAAGCTTGAGTCACTTCGCA+GGG | 0.626662 | 5_4:-23010026 | Msa0844520:CDS |
| TCGGTTAAGAGCTTCAAGAA+GGG | 0.627314 | 5_4:+23011920 | None:intergenic |
| TGCGCATATGAAGTTAGTTG+AGG | 0.631427 | 5_4:-23008233 | Msa0844520:intron |
| CAAGCATCACCCAGCCAAGG+AGG | 0.631735 | 5_4:-23011613 | Msa0844520:CDS |
| CAGAGATATGCGTCGAACTG+TGG | 0.637355 | 5_4:-23011322 | Msa0844520:CDS |
| CTGACAGCTTGAAGAGACCG+CGG | 0.645270 | 5_4:-23007679 | Msa0844520:CDS |
| ATCTTGTAGACACCCTGAAG+TGG | 0.645867 | 5_4:+23011855 | None:intergenic |
| AATGATCTGCTGCTGCAACA+AGG | 0.646976 | 5_4:-23012210 | Msa0844520:intron |
| TAAAGCTGCTGAGTTAAACA+AGG | 0.647648 | 5_4:-23012519 | Msa0844520:CDS |
| GAAAATCCCACATTATCACC+AGG | 0.648840 | 5_4:+23011690 | None:intergenic |
| GGAATTGGAACTGTGGCTGT+AGG | 0.649538 | 5_4:-23011828 | Msa0844520:CDS |
| TGACAGCAATGTGGGAGGTG+TGG | 0.650950 | 5_4:+23011511 | None:intergenic |
| ATCAATGATGGAACTCAAGG+AGG | 0.655225 | 5_4:-23008296 | Msa0844520:CDS |
| CCCTGAAGTGGTAATCGGAG+AGG | 0.655678 | 5_4:+23011867 | None:intergenic |
| ACCTACGCTTGAAGGAAAAG+GGG | 0.656499 | 5_4:+23012087 | None:intergenic |
| TAGCAAACCTGACAGCAATG+TGG | 0.658976 | 5_4:+23011502 | None:intergenic |
| AATGAAATCCCTGTGTCCGG+GGG | 0.661737 | 5_4:+23012376 | None:intergenic |
| ATGCAAATTTGTATCTACTG+GGG | 0.663449 | 5_4:-23008685 | Msa0844520:CDS |
| TCTGATGCACATCTCAGCCG+AGG | 0.666582 | 5_4:-23011654 | Msa0844520:CDS |
| GCAAATTTGTATCTACTGGG+GGG | 0.670792 | 5_4:-23008683 | Msa0844520:CDS |
| GTAGAACAAATGACCAGCAG+TGG | 0.675239 | 5_4:+23012586 | None:intergenic |
| CGGTATAACTATTCTGCCCG+CGG | 0.679712 | 5_4:+23007662 | None:intergenic |
| GGACCATGCAGATCTTTCCG+AGG | 0.685917 | 5_4:-23011718 | Msa0844520:CDS |
| AGCCATTTCCAATCCGACCA+GGG | 0.687901 | 5_4:+23011553 | None:intergenic |
| GGGCCTCGGAAAGATCTGCA+TGG | 0.692530 | 5_4:+23011715 | None:intergenic |
| AAACCTGACAGCAATGTGGG+AGG | 0.700136 | 5_4:+23011506 | None:intergenic |
| AACTTGAGATGTAAAGTGAG+TGG | 0.701077 | 5_4:+23011590 | None:intergenic |
| GATTGGAGGAATTGGAACTG+TGG | 0.703844 | 5_4:-23011835 | Msa0844520:CDS |
| GGGCATCGATGATAGTGCAG+CGG | 0.718267 | 5_4:+23012396 | None:intergenic |
| GATTCCCACCAAGCCCATGG+TGG | 0.723849 | 5_4:-23011388 | Msa0844520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTACTTGTATTAATT+TGG | - | chr5_4:23010451-23010470 | Msa0844520:intron | 10.0% |
| !!! | ATTTTTACTTGTATTAATTT+GGG | - | chr5_4:23010452-23010471 | Msa0844520:intron | 10.0% |
| !! | TCAAAGAAAATTAATTTATT+CGG | + | chr5_4:23011255-23011274 | None:intergenic | 10.0% |
| !! | TATTCCATAAAAATAAATAA+AGG | - | chr5_4:23012736-23012755 | Msa0844520:intron | 10.0% |
| !!! | AAATCCTTTATTTATTTTTA+TGG | + | chr5_4:23012743-23012762 | None:intergenic | 10.0% |
| !!! | TTTTTATGATTTCAAGTTTT+AGG | - | chr5_4:23008199-23008218 | Msa0844520:intron | 15.0% |
| !!! | TAGTTTTCAAAAAAAAGAAA+AGG | - | chr5_4:23008249-23008268 | Msa0844520:CDS | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr5_4:23010586-23010605 | Msa0844520:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr5_4:23010587-23010606 | Msa0844520:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr5_4:23010651-23010670 | Msa0844520:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr5_4:23010652-23010671 | Msa0844520:intron | 15.0% |
| !!! | TACAAGTTTTAACTATATTT+AGG | - | chr5_4:23011468-23011487 | Msa0844520:CDS | 15.0% |
| !!! | ACAAGTTTTAACTATATTTA+GGG | - | chr5_4:23011469-23011488 | Msa0844520:CDS | 15.0% |
| !! | AAGTCATCTTAATTATATTT+AGG | - | chr5_4:23011517-23011536 | Msa0844520:CDS | 15.0% |
| !! | AGTCATCTTAATTATATTTA+GGG | - | chr5_4:23011518-23011537 | Msa0844520:CDS | 15.0% |
| !!! | TATTTTTATGGAATAGTAAA+TGG | + | chr5_4:23012731-23012750 | None:intergenic | 15.0% |
| !!! | CATAAAAAATATTTGACTTT+AGG | - | chr5_4:23012826-23012845 | Msa0844520:intron | 15.0% |
| !!! | TAAGAAAAGTGTTTATATAA+TGG | + | chr5_4:23013039-23013058 | None:intergenic | 15.0% |
| !!! | ATTCGTTTATGATTTTGAAT+TGG | - | chr5_4:23007867-23007886 | Msa0844520:intron | 20.0% |
| !!! | GTAGTTTTTATTTGTTATGA+TGG | - | chr5_4:23007889-23007908 | Msa0844520:intron | 20.0% |
| !! | AAAAAAAAACACAAACGATA+TGG | + | chr5_4:23007932-23007951 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAGTAATACTGTT+TGG | - | chr5_4:23010505-23010524 | Msa0844520:intron | 20.0% |
| !!! | TTTTTTGAGTAATACTGTTT+GGG | - | chr5_4:23010506-23010525 | Msa0844520:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr5_4:23010588-23010607 | Msa0844520:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr5_4:23010611-23010630 | Msa0844520:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr5_4:23010684-23010703 | Msa0844520:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr5_4:23010685-23010704 | Msa0844520:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr5_4:23010721-23010740 | Msa0844520:intron | 20.0% |
| !!! | TTTTTGGAATATTGAATATC+TGG | - | chr5_4:23010787-23010806 | Msa0844520:intron | 20.0% |
| !! | ATATAACAGATAGAATATTG+AGG | + | chr5_4:23011005-23011024 | None:intergenic | 20.0% |
| !!! | TCTTTAGAATTTTGATACAA+AGG | + | chr5_4:23011052-23011071 | None:intergenic | 20.0% |
| !!! | TTGTATCAAAATTCTAAAGA+AGG | - | chr5_4:23011052-23011071 | Msa0844520:intron | 20.0% |
| !!! | TGTATCAAAATTCTAAAGAA+GGG | - | chr5_4:23011053-23011072 | Msa0844520:intron | 20.0% |
| !!! | TTTTTGCTTATAAATAGGAA+GGG | + | chr5_4:23011279-23011298 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTTATAAATAGGA+AGG | + | chr5_4:23011278-23011297 | None:intergenic | 20.0% |
| !!! | ACTCATTTTTGCTTATAAAT+AGG | + | chr5_4:23011197-23011216 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGCAAAAAT+GGG | + | chr5_4:23011193-23011212 | None:intergenic | 20.0% |
| !! | TTCCTATTTATAAGCAAAAA+TGG | + | chr5_4:23011192-23011211 | None:intergenic | 20.0% |
| !!! | CTCTTTTTTCAATGAAAATT+GGG | + | chr5_4:23011416-23011435 | None:intergenic | 20.0% |
| !!! | CAAGTTTTAACTATATTTAG+GGG | - | chr5_4:23011470-23011489 | Msa0844520:CDS | 20.0% |
| !! | GTCATCTTAATTATATTTAG+GGG | - | chr5_4:23011519-23011538 | Msa0844520:CDS | 20.0% |
| !! | TGTAATTATGTTTACATGTT+AGG | - | chr5_4:23011887-23011906 | Msa0844520:CDS | 20.0% |
| !!! | AGGTAAACAAATTTTATGAA+TGG | - | chr5_4:23012271-23012290 | Msa0844520:CDS | 20.0% |
| !! | TTAAATATGCATTGAATTTC+AGG | - | chr5_4:23012433-23012452 | Msa0844520:CDS | 20.0% |
| !! | GATTAAAACTTCTTAAATAG+CGG | - | chr5_4:23012891-23012910 | Msa0844520:intron | 20.0% |
| !!! | TTAAGTACACATTGATTTAT+GGG | + | chr5_4:23012956-23012975 | None:intergenic | 20.0% |
| !!! | ATTAAGTACACATTGATTTA+TGG | + | chr5_4:23012957-23012976 | None:intergenic | 20.0% |
| !! | AAATCAATGTGTACTTAATA+AGG | - | chr5_4:23012958-23012977 | Msa0844520:intron | 20.0% |
| !!! | AGGTTTTTTTTGCACAATTT+AGG | - | chr5_4:23007755-23007774 | Msa0844520:intron | 25.0% |
| !!! | GGTTTTTTTTGCACAATTTA+GGG | - | chr5_4:23007756-23007775 | Msa0844520:intron | 25.0% |
| ! | TATTTGATGCGTAATTGAAA+AGG | - | chr5_4:23007976-23007995 | Msa0844520:intron | 25.0% |
| !!! | TTACTGTACATGTTTGTTTT+CGG | - | chr5_4:23008006-23008025 | Msa0844520:intron | 25.0% |
| ! | GTAGTATAAACTCAATTTCA+TGG | - | chr5_4:23008038-23008057 | Msa0844520:intron | 25.0% |
| ! | CTCAGTATTCAACAATAAAA+TGG | + | chr5_4:23008133-23008152 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTTAGGAGTAA+TGG | - | chr5_4:23008207-23008226 | Msa0844520:intron | 25.0% |
| ! | AAAGGTTCATATTAACATTG+TGG | - | chr5_4:23008267-23008286 | Msa0844520:CDS | 25.0% |
| ! | CATATTAACATTGTGGTTAT+TGG | - | chr5_4:23008274-23008293 | Msa0844520:CDS | 25.0% |
| ! | TTCATTAAGAACATGATTAC+TGG | - | chr5_4:23008547-23008566 | Msa0844520:intron | 25.0% |
| ! | TCATTAAGAACATGATTACT+GGG | - | chr5_4:23008548-23008567 | Msa0844520:intron | 25.0% |
| ! | TTATTATCTATCTTGACAGA+TGG | - | chr5_4:23008786-23008805 | Msa0844520:intron | 25.0% |
| ! | TACCAAATATGTTTAGTAGA+GGG | + | chr5_4:23008955-23008974 | None:intergenic | 25.0% |
| ! | ACTAAACATATTTGGTACAA+AGG | - | chr5_4:23008958-23008977 | Msa0844520:intron | 25.0% |
| !! | TTCTGAAAAAGTAATTGAGA+AGG | - | chr5_4:23009452-23009471 | Msa0844520:intron | 25.0% |
| ! | GGCATTTGTAAAAAAGATAA+CGG | + | chr5_4:23009939-23009958 | None:intergenic | 25.0% |
| !! | AATCTTTTCCTACACATTAA+AGG | - | chr5_4:23009978-23009997 | Msa0844520:intron | 25.0% |
| ! | TATGTATTCCTTTAATGTGT+AGG | + | chr5_4:23009989-23010008 | None:intergenic | 25.0% |
| ! | CATGTTTCTTATCCAATTAT+TGG | - | chr5_4:23010066-23010085 | Msa0844520:intron | 25.0% |
| ! | AATTAATGCCAGTATATTCA+AGG | - | chr5_4:23010112-23010131 | Msa0844520:intron | 25.0% |
| ! | ATTAATGCCAGTATATTCAA+GGG | - | chr5_4:23010113-23010132 | Msa0844520:intron | 25.0% |
| ! | TAGTATCTTCTCAATTCTAA+TGG | - | chr5_4:23010181-23010200 | Msa0844520:intron | 25.0% |
| ! | AGTATCTTCTCAATTCTAAT+GGG | - | chr5_4:23010182-23010201 | Msa0844520:intron | 25.0% |
| ! | GATACAGTTAATAGTATAAG+AGG | + | chr5_4:23010242-23010261 | None:intergenic | 25.0% |
| ! | CTAAAGGTGAAAATAAAATG+TGG | + | chr5_4:23010365-23010384 | None:intergenic | 25.0% |
| !!! | CACATTTTATTTTCACCTTT+AGG | - | chr5_4:23010363-23010382 | Msa0844520:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr5_4:23010610-23010629 | Msa0844520:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr5_4:23010720-23010739 | Msa0844520:intron | 25.0% |
| !!! | ATCTTTAGAGACACATTTTT+TGG | - | chr5_4:23010771-23010790 | Msa0844520:intron | 25.0% |
| !!! | TACTACATAATCAGTTTTAG+AGG | + | chr5_4:23010957-23010976 | None:intergenic | 25.0% |
| !!! | ACCCATTTTTGCTTATAAAT+AGG | - | chr5_4:23011274-23011293 | Msa0844520:CDS | 25.0% |
| ! | TTGCTTATAAATAGGAATGA+AGG | - | chr5_4:23011282-23011301 | Msa0844520:CDS | 25.0% |
| ! | TGCTTATAAATAGGAATGAA+GGG | - | chr5_4:23011283-23011302 | Msa0844520:CDS | 25.0% |
| !!! | CCTCTTTTTTCAATGAAAAT+TGG | + | chr5_4:23011417-23011436 | None:intergenic | 25.0% |
| !! | CCAATTTTCATTGAAAAAAG+AGG | - | chr5_4:23011414-23011433 | Msa0844520:CDS | 25.0% |
| ! | ATTTATGACGTTGTTTATAG+TGG | + | chr5_4:23011449-23011468 | None:intergenic | 25.0% |
| ! | ATTATATTTAGGGGTTTAGT+TGG | - | chr5_4:23011528-23011547 | Msa0844520:CDS | 25.0% |
| !!! | TTTTGTTTCAAATCAATGAG+TGG | + | chr5_4:23011588-23011607 | None:intergenic | 25.0% |
| ! | TGTTTAAACTACCAAAGATT+TGG | - | chr5_4:23011614-23011633 | Msa0844520:CDS | 25.0% |
| ! | AAGTGAATTAGAAACTACAA+AGG | + | chr5_4:23011686-23011705 | None:intergenic | 25.0% |
| !!! | TTCTTGTTGATTTGTTATGA+AGG | - | chr5_4:23011820-23011839 | Msa0844520:CDS | 25.0% |
| !!! | TTGATTTGTTATGAAGGTTT+TGG | - | chr5_4:23011826-23011845 | Msa0844520:CDS | 25.0% |
| ! | TGAAAAACTTAAATGCAACA+AGG | + | chr5_4:23012042-23012061 | None:intergenic | 25.0% |
| ! | AACTCGTTATTATAATGAAG+AGG | + | chr5_4:23012082-23012101 | None:intergenic | 25.0% |
| ! | TCACATTCAAGTGATAAAAA+AGG | + | chr5_4:23012105-23012124 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTTGAAAGCAGT+AGG | - | chr5_4:23012171-23012190 | Msa0844520:intron | 25.0% |
| ! | AATGCAAATTTGTATCTACT+GGG | - | chr5_4:23012220-23012239 | Msa0844520:CDS | 25.0% |
| ! | TTACCTCCAAATTATTCAAA+CGG | + | chr5_4:23012257-23012276 | None:intergenic | 25.0% |
| ! | ACAAAGAACAATGATGTATT+TGG | - | chr5_4:23012464-23012483 | Msa0844520:CDS | 25.0% |
| !!! | ATGCTGCTTTAATAAGAATT+TGG | + | chr5_4:23012994-23013013 | None:intergenic | 25.0% |
| !!! | GATGAGAAGGAATTATTTTA+AGG | + | chr5_4:23013113-23013132 | None:intergenic | 25.0% |
| TGCAAAAAAAACCTACGAAT+CGG | + | chr5_4:23007749-23007768 | None:intergenic | 30.0% | |
| ! | GATCATTAGATGATAATGTG+TGG | - | chr5_4:23007798-23007817 | Msa0844520:intron | 30.0% |
| !!! | CTTTGTTTTCTGTGTTGAAT+TGG | - | chr5_4:23008170-23008189 | Msa0844520:intron | 30.0% |
| ! | ACTTTCATCCTTTTTGATGA+AGG | - | chr5_4:23008861-23008880 | Msa0844520:intron | 30.0% |
| GTACCAAATATGTTTAGTAG+AGG | + | chr5_4:23008956-23008975 | None:intergenic | 30.0% | |
| TACATCTCAAGTTATCATCA+CGG | - | chr5_4:23009326-23009345 | Msa0844520:intron | 30.0% | |
| TCACCTTTCTTCAAGAATTT+GGG | + | chr5_4:23009480-23009499 | None:intergenic | 30.0% | |
| ATCACCTTTCTTCAAGAATT+TGG | + | chr5_4:23009481-23009500 | None:intergenic | 30.0% | |
| AAATTCTTGAAGAAAGGTGA+TGG | - | chr5_4:23009480-23009499 | Msa0844520:intron | 30.0% | |
| ! | TTTTCTGAATATCCTTCACT+TGG | - | chr5_4:23009549-23009568 | Msa0844520:intron | 30.0% |
| GCATATCTCTGACAATAAAA+CGG | + | chr5_4:23009575-23009594 | None:intergenic | 30.0% | |
| AACAATTATCCTAGTGAAAG+TGG | - | chr5_4:23009633-23009652 | Msa0844520:intron | 30.0% | |
| CTCTGATCATTAGTTATTCT+TGG | - | chr5_4:23009871-23009890 | Msa0844520:intron | 30.0% | |
| AAGATTTACATTTGCCAAGT+AGG | - | chr5_4:23009896-23009915 | Msa0844520:intron | 30.0% | |
| ! | AGTAATATGAAGGGTATGAT+TGG | + | chr5_4:23010035-23010054 | None:intergenic | 30.0% |
| AGTACAGCTAGTAATATGAA+GGG | + | chr5_4:23010044-23010063 | None:intergenic | 30.0% | |
| AAGTACAGCTAGTAATATGA+AGG | + | chr5_4:23010045-23010064 | None:intergenic | 30.0% | |
| GAAGTATGAAGTCCAATAAT+TGG | + | chr5_4:23010081-23010100 | None:intergenic | 30.0% | |
| TGAAAATCCCTTGAATATAC+TGG | + | chr5_4:23010123-23010142 | None:intergenic | 30.0% | |
| ! | TTGTCATTTAGATGATCACT+TGG | + | chr5_4:23010279-23010298 | None:intergenic | 30.0% |
| AGTGATCATCTAAATGACAA+CGG | - | chr5_4:23010279-23010298 | Msa0844520:intron | 30.0% | |
| GATAAAATTTGAGAGCAAGA+AGG | + | chr5_4:23010336-23010355 | None:intergenic | 30.0% | |
| !!! | TATTTTCACCTTTAGGATTC+AGG | - | chr5_4:23010370-23010389 | Msa0844520:intron | 30.0% |
| ! | TACTTGTATTAATTTGGGCT+AGG | - | chr5_4:23010457-23010476 | Msa0844520:intron | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr5_4:23010595-23010614 | Msa0844520:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr5_4:23010698-23010717 | Msa0844520:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr5_4:23010699-23010718 | Msa0844520:intron | 30.0% |
| CTGGTTATAAACTAAACATG+CGG | + | chr5_4:23011092-23011111 | None:intergenic | 30.0% | |
| !! | TAGGTCATTTTACTTTTGCA+CGG | + | chr5_4:23011164-23011183 | None:intergenic | 30.0% |
| GCTTATAAATAGGAATGAAG+GGG | - | chr5_4:23011284-23011303 | Msa0844520:CDS | 30.0% | |
| CTTATAAATAGGAATGAAGG+GGG | - | chr5_4:23011285-23011304 | Msa0844520:CDS | 30.0% | |
| ! | TACCAAAGATTTGGAATGAA+TGG | - | chr5_4:23011623-23011642 | Msa0844520:CDS | 30.0% |
| !!! | GAGTACTTTTAAAATCTTCC+TGG | - | chr5_4:23011645-23011664 | Msa0844520:CDS | 30.0% |
| ! | ATCACAAGAAAGAACCTTTT+CGG | + | chr5_4:23011718-23011737 | None:intergenic | 30.0% |
| ! | ATGACATGAAATTTGAGACT+CGG | + | chr5_4:23011854-23011873 | None:intergenic | 30.0% |
| ! | ATTCACGCTTCATTATTTTC+AGG | - | chr5_4:23012194-23012213 | Msa0844520:intron | 30.0% |
| CAATGCAAATTTGTATCTAC+TGG | - | chr5_4:23012219-23012238 | Msa0844520:CDS | 30.0% | |
| ATGCAAATTTGTATCTACTG+GGG | - | chr5_4:23012221-23012240 | Msa0844520:CDS | 30.0% | |
| ATACACCCGTTTGAATAATT+TGG | - | chr5_4:23012248-23012267 | Msa0844520:CDS | 30.0% | |
| TACCTCCAAATTATTCAAAC+GGG | + | chr5_4:23012256-23012275 | None:intergenic | 30.0% | |
| GTGCATATAATATCCATCAA+CGG | - | chr5_4:23012324-23012343 | Msa0844520:CDS | 30.0% | |
| ACTTAAAGTAGAGCTTGATA+AGG | - | chr5_4:23012490-23012509 | Msa0844520:CDS | 30.0% | |
| !! | ATCTACCTTTTTCATCATTG+CGG | - | chr5_4:23012569-23012588 | Msa0844520:CDS | 30.0% |
| TTTAACCGCAATGATGAAAA+AGG | + | chr5_4:23012577-23012596 | None:intergenic | 30.0% | |
| TAAATGGTCAAGAACAAAAC+CGG | + | chr5_4:23012715-23012734 | None:intergenic | 30.0% | |
| !! | CTACCATTTTTCTCTTCGTT+CGG | - | chr5_4:23007643-23007662 | Msa0844520:three_prime_UTR | 35.0% |
| TAACCGAACGAAGAGAAAAA+TGG | + | chr5_4:23007649-23007668 | None:intergenic | 35.0% | |
| ! | ATTTTTCTCTTCGTTCGGTT+AGG | - | chr5_4:23007648-23007667 | Msa0844520:three_prime_UTR | 35.0% |
| ! | TTTTTCTCTTCGTTCGGTTA+GGG | - | chr5_4:23007649-23007668 | Msa0844520:three_prime_UTR | 35.0% |
| ACATCAGCTAGAAACGAAAT+CGG | + | chr5_4:23007707-23007726 | None:intergenic | 35.0% | |
| !! | AGGAGTAATGGATAAAGAAG+AGG | - | chr5_4:23008219-23008238 | Msa0844520:intron | 35.0% |
| TTATTGGTCATGTCAACTCT+GGG | - | chr5_4:23008290-23008309 | Msa0844520:CDS | 35.0% | |
| AGGCATTTCAAAGATGGAAA+TGG | - | chr5_4:23008351-23008370 | Msa0844520:intron | 35.0% | |
| TAAAGCTGCTGAGTTAAACA+AGG | - | chr5_4:23008387-23008406 | Msa0844520:intron | 35.0% | |
| CTGACCATTATTGGAAATAC+CGG | + | chr5_4:23008632-23008651 | None:intergenic | 35.0% | |
| ! | TCATCCTTTTTGATGAAGGT+TGG | - | chr5_4:23008865-23008884 | Msa0844520:intron | 35.0% |
| ATAGCCAACCTTCATCAAAA+AGG | + | chr5_4:23008872-23008891 | None:intergenic | 35.0% | |
| AGCCCTCTACTAAACATATT+TGG | - | chr5_4:23008950-23008969 | Msa0844520:intron | 35.0% | |
| AACTTGAGATGTAAAGTGAG+TGG | + | chr5_4:23009319-23009338 | None:intergenic | 35.0% | |
| ACATCTCAAGTTATCATCAC+GGG | - | chr5_4:23009327-23009346 | Msa0844520:intron | 35.0% | |
| ! | TTCAGAAATTTTGTCCACCT+TGG | + | chr5_4:23009439-23009458 | None:intergenic | 35.0% |
| GTTATCTTACCACTTTCACT+AGG | + | chr5_4:23009645-23009664 | None:intergenic | 35.0% | |
| ACAAAATGCACACAAAATCC+AGG | + | chr5_4:23009833-23009852 | None:intergenic | 35.0% | |
| TAAATTTGAGGGTTCCTACT+TGG | + | chr5_4:23009913-23009932 | None:intergenic | 35.0% | |
| ! | GATAACGGCTGTAAATTTGA+GGG | + | chr5_4:23009924-23009943 | None:intergenic | 35.0% |
| ! | AGATAACGGCTGTAAATTTG+AGG | + | chr5_4:23009925-23009944 | None:intergenic | 35.0% |
| GTTATTGAACGTGTTTCCTT+GGG | - | chr5_4:23010301-23010320 | Msa0844520:intron | 35.0% | |
| AAATTTGAGAGCAAGAAGGA+GGG | + | chr5_4:23010332-23010351 | None:intergenic | 35.0% | |
| AAAATTTGAGAGCAAGAAGG+AGG | + | chr5_4:23010333-23010352 | None:intergenic | 35.0% | |
| TCCAAGTGATCATCTAAACA+TGG | - | chr5_4:23010409-23010428 | Msa0844520:intron | 35.0% | |
| ACCATGTTTAGATGATCACT+TGG | + | chr5_4:23010413-23010432 | None:intergenic | 35.0% | |
| ! | TGTATTAATTTGGGCTAGGA+TGG | - | chr5_4:23010461-23010480 | Msa0844520:intron | 35.0% |
| CAAAGTAGGTCAATTATACC+GGG | + | chr5_4:23010551-23010570 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr5_4:23010552-23010571 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr5_4:23010565-23010584 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr5_4:23010734-23010753 | Msa0844520:intron | 35.0% | |
| ! | CAGTAAGAGCACAAAAAGAA+AGG | + | chr5_4:23010853-23010872 | None:intergenic | 35.0% |
| TGCACTAATACACCTTGATT+AGG | - | chr5_4:23011024-23011043 | Msa0844520:intron | 35.0% | |
| TATAAACTAAACATGCGGAC+AGG | + | chr5_4:23011087-23011106 | None:intergenic | 35.0% | |
| TGCTTATAAATAGGAAGGGA+GGG | + | chr5_4:23011188-23011207 | None:intergenic | 35.0% | |
| TTGCTTATAAATAGGAAGGG+AGG | + | chr5_4:23011189-23011208 | None:intergenic | 35.0% | |
| !! | TCGAAGAAAGTTGATGCATT+TGG | - | chr5_4:23011216-23011235 | Msa0844520:intron | 35.0% |
| !! | AGTTTGATTTTCCCATCCTA+AGG | - | chr5_4:23011314-23011333 | Msa0844520:CDS | 35.0% |
| CCAACAATATTGAATAGAGG+AGG | + | chr5_4:23011342-23011361 | None:intergenic | 35.0% | |
| CCTCCTCTATTCAATATTGT+TGG | - | chr5_4:23011339-23011358 | Msa0844520:CDS | 35.0% | |
| CCTCTATTCAATATTGTTGG+CGG | - | chr5_4:23011342-23011361 | Msa0844520:CDS | 35.0% | |
| !!! | GTTGGCGGTTTAATGTTTTT+TGG | - | chr5_4:23011357-23011376 | Msa0844520:CDS | 35.0% |
| CTCCATTCATTCCAAATCTT+TGG | + | chr5_4:23011628-23011647 | None:intergenic | 35.0% | |
| ! | AAAGAACCTTTTCGGTGATT+AGG | + | chr5_4:23011710-23011729 | None:intergenic | 35.0% |
| TCTTTCTTGTGATACCTGTT+TGG | - | chr5_4:23011725-23011744 | Msa0844520:CDS | 35.0% | |
| GTCAAAAAAATTCACCAGTG+GGG | + | chr5_4:23011760-23011779 | None:intergenic | 35.0% | |
| GGTCAAAAAAATTCACCAGT+GGG | + | chr5_4:23011761-23011780 | None:intergenic | 35.0% | |
| CAGAGACAAAGAACATCTAT+CGG | + | chr5_4:23011782-23011801 | None:intergenic | 35.0% | |
| TCAACAAGAATTTCCCAAAG+AGG | + | chr5_4:23011810-23011829 | None:intergenic | 35.0% | |
| TAAGTGACAGACATTCTTGA+AGG | + | chr5_4:23011925-23011944 | None:intergenic | 35.0% | |
| !!! | GATTTTTGAGTTTCTGCTCA+CGG | - | chr5_4:23011971-23011990 | Msa0844520:CDS | 35.0% |
| AATAATCTGACTACACTACC+AGG | + | chr5_4:23012134-23012153 | None:intergenic | 35.0% | |
| TGCAAATTTGTATCTACTGG+GGG | - | chr5_4:23012222-23012241 | Msa0844520:CDS | 35.0% | |
| ! | ATGTGATTTGAAACGTAGTG+TGG | - | chr5_4:23012362-23012381 | Msa0844520:CDS | 35.0% |
| ! | TGTGATTTGAAACGTAGTGT+GGG | - | chr5_4:23012363-23012382 | Msa0844520:CDS | 35.0% |
| TCATTGCGGTTAAAATCAGA+TGG | - | chr5_4:23012583-23012602 | Msa0844520:CDS | 35.0% | |
| ! | AGGTACATAGCTTGTATTTC+CGG | - | chr5_4:23012693-23012712 | Msa0844520:exon | 35.0% |
| ! | CAAATCACAACAAAAGCATG+TGG | + | chr5_4:23012869-23012888 | None:intergenic | 35.0% |
| GTACTTAATAAGGTCTCTCA+TGG | - | chr5_4:23012968-23012987 | Msa0844520:intron | 35.0% | |
| ATCATGCTCCTCTCTAAATA+TGG | - | chr5_4:23013130-23013149 | Msa0844520:intron | 35.0% | |
| TCATGCTCCTCTCTAAATAT+GGG | - | chr5_4:23013131-23013150 | Msa0844520:intron | 35.0% | |
| TTGTTGACCCATATTTAGAG+AGG | + | chr5_4:23013141-23013160 | None:intergenic | 35.0% | |
| ATCGGAGAAGTTTACCTTGA+AGG | + | chr5_4:23007689-23007708 | None:intergenic | 40.0% | |
| GTTATTGGTCATGTCAACTC+TGG | - | chr5_4:23008289-23008308 | Msa0844520:CDS | 40.0% | |
| GGTCATTTGTTCTACAAGCT+TGG | - | chr5_4:23008328-23008347 | Msa0844520:intron | 40.0% | |
| CATTTGTTCTACAAGCTTGG+AGG | - | chr5_4:23008331-23008350 | Msa0844520:intron | 40.0% | |
| AGGATTCATTCAAGTATGCG+TGG | - | chr5_4:23008407-23008426 | Msa0844520:intron | 40.0% | |
| GGATTCATTCAAGTATGCGT+GGG | - | chr5_4:23008408-23008427 | Msa0844520:intron | 40.0% | |
| TTAATGAAATCCCTGTGTCC+GGG | + | chr5_4:23008535-23008554 | None:intergenic | 40.0% | |
| CTTAATGAAATCCCTGTGTC+CGG | + | chr5_4:23008536-23008555 | None:intergenic | 40.0% | |
| ! | AAGAAGAGCACAATCAGCTT+GGG | + | chr5_4:23008578-23008597 | None:intergenic | 40.0% |
| ! | TAAGAAGAGCACAATCAGCT+TGG | + | chr5_4:23008579-23008598 | None:intergenic | 40.0% |
| TTCACGGATCTGACCATTAT+TGG | + | chr5_4:23008641-23008660 | None:intergenic | 40.0% | |
| TACCTACGCTTGAAGGAAAA+GGG | + | chr5_4:23008823-23008842 | None:intergenic | 40.0% | |
| ATACCTACGCTTGAAGGAAA+AGG | + | chr5_4:23008824-23008843 | None:intergenic | 40.0% | |
| TTCTTCATACCTACGCTTGA+AGG | + | chr5_4:23008830-23008849 | None:intergenic | 40.0% | |
| GGAACAAATTGAAGTTCGTC+TGG | + | chr5_4:23008898-23008917 | None:intergenic | 40.0% | |
| ! | CTTCAATTTGTTCCCATCTC+TGG | - | chr5_4:23008904-23008923 | Msa0844520:intron | 40.0% |
| !!! | TGTTCCCATCTCTGGTTTTA+AGG | - | chr5_4:23008912-23008931 | Msa0844520:intron | 40.0% |
| !!! | GTTCCCATCTCTGGTTTTAA+GGG | - | chr5_4:23008913-23008932 | Msa0844520:intron | 40.0% |
| TCTCCCTTAAAACCAGAGAT+GGG | + | chr5_4:23008919-23008938 | None:intergenic | 40.0% | |
| ATCTCCCTTAAAACCAGAGA+TGG | + | chr5_4:23008920-23008939 | None:intergenic | 40.0% | |
| TTAAGAGCTTCAAGAAGGGT+GGG | + | chr5_4:23008985-23009004 | None:intergenic | 40.0% | |
| TCGGTTAAGAGCTTCAAGAA+GGG | + | chr5_4:23008989-23009008 | None:intergenic | 40.0% | |
| TTCGGTTAAGAGCTTCAAGA+AGG | + | chr5_4:23008990-23009009 | None:intergenic | 40.0% | |
| GTCTACAAGATTGGAGGAAT+TGG | - | chr5_4:23009063-23009082 | Msa0844520:intron | 40.0% | |
| GAAAATCCCACATTATCACC+AGG | + | chr5_4:23009219-23009238 | None:intergenic | 40.0% | |
| GAGCCCAAATTCTTGAAGAA+AGG | - | chr5_4:23009474-23009493 | Msa0844520:intron | 40.0% | |
| ! | TTCTTGAAGAAAGGTGATGG+TGG | - | chr5_4:23009483-23009502 | Msa0844520:intron | 40.0% |
| GAAAAACTCTCAACCACCAT+GGG | + | chr5_4:23009534-23009553 | None:intergenic | 40.0% | |
| AGAAAAACTCTCAACCACCA+TGG | + | chr5_4:23009535-23009554 | None:intergenic | 40.0% | |
| ACAATAAAACGGCCAAGTGA+AGG | + | chr5_4:23009564-23009583 | None:intergenic | 40.0% | |
| AACAGTTCGCTCTTTCAATG+TGG | + | chr5_4:23009673-23009692 | None:intergenic | 40.0% | |
| !! | GAAAGAGCGAACTGTTTTTC+AGG | - | chr5_4:23009677-23009696 | Msa0844520:intron | 40.0% |
| TTTCTTATTCCTTCCCGATC+TGG | - | chr5_4:23009736-23009755 | Msa0844520:intron | 40.0% | |
| TTCTTATTCCTTCCCGATCT+GGG | - | chr5_4:23009737-23009756 | Msa0844520:intron | 40.0% | |
| GGCAATACATGTAGAAGCAA+TGG | + | chr5_4:23010221-23010240 | None:intergenic | 40.0% | |
| GGTTATTGAACGTGTTTCCT+TGG | - | chr5_4:23010300-23010319 | Msa0844520:intron | 40.0% | |
| GAGATAGACCTGAATCCTAA+AGG | + | chr5_4:23010381-23010400 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr5_4:23010549-23010568 | Msa0844520:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr5_4:23010735-23010754 | Msa0844520:intron | 40.0% | |
| GTGTCGAAATAAAGAGCTGA+TGG | - | chr5_4:23010910-23010929 | Msa0844520:intron | 40.0% | |
| !! | GATACAAAGGTGCCTAATCA+AGG | + | chr5_4:23011039-23011058 | None:intergenic | 40.0% |
| CACATAAGCGCATTAGCTAA+AGG | - | chr5_4:23011138-23011157 | Msa0844520:intron | 40.0% | |
| ATAAATAGGAAGGGAGGGAT+AGG | + | chr5_4:23011183-23011202 | None:intergenic | 40.0% | |
| CCGCCAACAATATTGAATAG+AGG | + | chr5_4:23011345-23011364 | None:intergenic | 40.0% | |
| GGGGTATAGTTCGAAAACAA+AGG | - | chr5_4:23011489-23011508 | Msa0844520:CDS | 40.0% | |
| GGGGTTTAGTTGGAAATCAA+AGG | - | chr5_4:23011538-23011557 | Msa0844520:CDS | 40.0% | |
| CACTTTCCTAATCACCGAAA+AGG | - | chr5_4:23011701-23011720 | Msa0844520:CDS | 40.0% | |
| AAAATTCACCAGTGGGGATT+GGG | + | chr5_4:23011754-23011773 | None:intergenic | 40.0% | |
| AAAAATTCACCAGTGGGGAT+TGG | + | chr5_4:23011755-23011774 | None:intergenic | 40.0% | |
| CGGTCAAAAAAATTCACCAG+TGG | + | chr5_4:23011762-23011781 | None:intergenic | 40.0% | |
| CAAGAATTTCCCAAAGAGGA+GGG | + | chr5_4:23011806-23011825 | None:intergenic | 40.0% | |
| ACAAGAATTTCCCAAAGAGG+AGG | + | chr5_4:23011807-23011826 | None:intergenic | 40.0% | |
| ! | CACTACTGTACTTCTTTTCC+TGG | - | chr5_4:23011949-23011968 | Msa0844520:CDS | 40.0% |
| GAGCAGAAACTCAAAAATCC+AGG | + | chr5_4:23011970-23011989 | None:intergenic | 40.0% | |
| ACTTGAATGTGACTTCTACC+TGG | - | chr5_4:23012113-23012132 | Msa0844520:intron | 40.0% | |
| GCAAATTTGTATCTACTGGG+GGG | - | chr5_4:23012223-23012242 | Msa0844520:CDS | 40.0% | |
| CACCCGTTTGAATAATTTGG+AGG | - | chr5_4:23012251-23012270 | Msa0844520:CDS | 40.0% | |
| ATCCTTGAAGAGAGAATCAG+AGG | - | chr5_4:23012640-23012659 | Msa0844520:CDS | 40.0% | |
| TTCCTCTGATTCTCTCTTCA+AGG | + | chr5_4:23012645-23012664 | None:intergenic | 40.0% | |
| TGCGCATATGAAGTTAGTTG+AGG | - | chr5_4:23012673-23012692 | Msa0844520:CDS | 40.0% | |
| GCATTCTCTACCACAGAATT+CGG | - | chr5_4:23013010-23013029 | Msa0844520:intron | 40.0% | |
| ATAATGGTGACCGAATTCTG+TGG | + | chr5_4:23013023-23013042 | None:intergenic | 40.0% | |
| ATAGTTATACCGGTCACTTC+TGG | - | chr5_4:23013255-23013274 | Msa0844520:five_prime_UTR | 40.0% | |
| !! | CATCGATATCACCGATTCGT+AGG | - | chr5_4:23007735-23007754 | Msa0844520:intron | 45.0% |
| GGGTACGTATGCGATTACAT+AGG | - | chr5_4:23007776-23007795 | Msa0844520:intron | 45.0% | |
| GTAGAACAAATGACCAGCAG+TGG | + | chr5_4:23008323-23008342 | None:intergenic | 45.0% | |
| !! | GCTTGGAGGCATTTCAAAGA+TGG | - | chr5_4:23008345-23008364 | Msa0844520:intron | 45.0% |
| GTGGGTTCTTGACAAACTCA+AGG | - | chr5_4:23008426-23008445 | Msa0844520:CDS | 45.0% | |
| TAATGAAATCCCTGTGTCCG+GGG | + | chr5_4:23008534-23008553 | None:intergenic | 45.0% | |
| !! | ATCGTTGATTCCACTCATGC+TGG | - | chr5_4:23008598-23008617 | Msa0844520:intron | 45.0% |
| !!! | GATTCCACTCATGCTGGTTT+TGG | - | chr5_4:23008604-23008623 | Msa0844520:intron | 45.0% |
| GGAGCCGGTATTTCCAATAA+TGG | - | chr5_4:23008625-23008644 | Msa0844520:intron | 45.0% | |
| ! | AAGCAAGGAGAGCATGTTCA+CGG | + | chr5_4:23008657-23008676 | None:intergenic | 45.0% |
| TGACACCAAGAGAGTAAGCA+AGG | + | chr5_4:23008672-23008691 | None:intergenic | 45.0% | |
| AATGATCTGCTGCTGCAACA+AGG | - | chr5_4:23008696-23008715 | Msa0844520:intron | 45.0% | |
| TCTTGACAGATGGATGCCTT+TGG | - | chr5_4:23008796-23008815 | Msa0844520:intron | 45.0% | |
| ACCTACGCTTGAAGGAAAAG+GGG | + | chr5_4:23008822-23008841 | None:intergenic | 45.0% | |
| GTTAAGAGCTTCAAGAAGGG+TGG | + | chr5_4:23008986-23009005 | None:intergenic | 45.0% | |
| ACCGAATCAAAGAGCCTAAG+AGG | - | chr5_4:23009004-23009023 | Msa0844520:intron | 45.0% | |
| GCCTCTTAGGCTCTTTGATT+CGG | + | chr5_4:23009008-23009027 | None:intergenic | 45.0% | |
| AGACACCCTGAAGTGGTAAT+CGG | + | chr5_4:23009047-23009066 | None:intergenic | 45.0% | |
| ATCTTGTAGACACCCTGAAG+TGG | + | chr5_4:23009054-23009073 | None:intergenic | 45.0% | |
| ! | CTTCAGGGTGTCTACAAGAT+TGG | - | chr5_4:23009054-23009073 | Msa0844520:intron | 45.0% |
| GATTGGAGGAATTGGAACTG+TGG | - | chr5_4:23009071-23009090 | Msa0844520:intron | 45.0% | |
| TGGTGTCTTGAAACCTGGAA+TGG | - | chr5_4:23009113-23009132 | Msa0844520:intron | 45.0% | |
| GCAAAAGTCAACACCATTCC+AGG | + | chr5_4:23009129-23009148 | None:intergenic | 45.0% | |
| TGAAGTGACGTCTTTGCAGA+TGG | - | chr5_4:23009167-23009186 | Msa0844520:intron | 45.0% | |
| TCCCACATTATCACCAGGAA+GGG | + | chr5_4:23009214-23009233 | None:intergenic | 45.0% | |
| ATCCCACATTATCACCAGGA+AGG | + | chr5_4:23009215-23009234 | None:intergenic | 45.0% | |
| ! | AGTTTGAGGCAACATAGCCT+CGG | + | chr5_4:23009272-23009291 | None:intergenic | 45.0% |
| AGCAAACCTGACAGCAATGT+GGG | + | chr5_4:23009406-23009425 | None:intergenic | 45.0% | |
| TAGCAAACCTGACAGCAATG+TGG | + | chr5_4:23009407-23009426 | None:intergenic | 45.0% | |
| ! | GTTTGCTAAGCTTCTTGCCA+AGG | - | chr5_4:23009419-23009438 | Msa0844520:intron | 45.0% |
| AGTCTCTAGTTGTGAACACC+TGG | - | chr5_4:23009812-23009831 | Msa0844520:intron | 45.0% | |
| ATTGAACGTGTTTCCTTGGG+TGG | - | chr5_4:23010304-23010323 | Msa0844520:intron | 45.0% | |
| AAATGATACTACCTCCGTCC+CGG | - | chr5_4:23010530-23010549 | Msa0844520:intron | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr5_4:23010547-23010566 | None:intergenic | 45.0% | |
| ATAAGCTTGAGTCACTTCGC+AGG | - | chr5_4:23010879-23010898 | Msa0844520:intron | 45.0% | |
| TAAGCTTGAGTCACTTCGCA+GGG | - | chr5_4:23010880-23010899 | Msa0844520:intron | 45.0% | |
| ACTAAACATGCGGACAGGAT+AGG | + | chr5_4:23011082-23011101 | None:intergenic | 45.0% | |
| !!! | TGCTAGTTTTGCACTAGAGC+TGG | + | chr5_4:23011111-23011130 | None:intergenic | 45.0% |
| !! | TTGAATAGAGGAGGTGCCTT+AGG | + | chr5_4:23011333-23011352 | None:intergenic | 45.0% |
| GTGACAGACATTCTTGAAGG+TGG | + | chr5_4:23011922-23011941 | None:intergenic | 45.0% | |
| TTCTGCTCACGGTTGTTACA+TGG | - | chr5_4:23011982-23012001 | Msa0844520:CDS | 45.0% | |
| ! | AGAAGTGCATGAACCGTTGA+TGG | + | chr5_4:23012340-23012359 | None:intergenic | 45.0% |
| ! | TAGAGAGGAGCATGATGAGA+AGG | + | chr5_4:23013126-23013145 | None:intergenic | 45.0% |
| CACTTTCTCTTCAAGCTGTC+AGG | + | chr5_4:23013193-23013212 | None:intergenic | 45.0% | |
| !! | TTAATTCTTAAAAAATATAT+AGG | + | chr5_4:23009960-23009979 | None:intergenic | 5.0% |
| TTTCAACGCAGCGTCCTTCA+AGG | - | chr5_4:23007672-23007691 | Msa0844520:CDS | 50.0% | |
| ! | GATGATAGTGCAGCGGTACT+TGG | + | chr5_4:23008506-23008525 | None:intergenic | 50.0% |
| AATGAAATCCCTGTGTCCGG+GGG | + | chr5_4:23008533-23008552 | None:intergenic | 50.0% | |
| !!! | ACTCATGCTGGTTTTGGAGC+CGG | - | chr5_4:23008610-23008629 | Msa0844520:intron | 50.0% |
| GCTCTCCTTGCTTACTCTCT+TGG | - | chr5_4:23008664-23008683 | Msa0844520:CDS | 50.0% | |
| CTTGAAGGAAAAGGGGCCAA+AGG | + | chr5_4:23008815-23008834 | None:intergenic | 50.0% | |
| GGCTTGTCTGATAGCCTCTT+AGG | + | chr5_4:23009021-23009040 | None:intergenic | 50.0% | |
| CCTCTCCGATTACCACTTCA+GGG | - | chr5_4:23009039-23009058 | Msa0844520:intron | 50.0% | |
| ! | CAGGGTGTCTACAAGATTGG+AGG | - | chr5_4:23009057-23009076 | Msa0844520:intron | 50.0% |
| GGAATTGGAACTGTGGCTGT+AGG | - | chr5_4:23009078-23009097 | Msa0844520:intron | 50.0% | |
| CTGTGGCTGTAGGATGTGTT+AGG | - | chr5_4:23009088-23009107 | Msa0844520:intron | 50.0% | |
| GCTGTAGGATGTGTTAGGAC+TGG | - | chr5_4:23009093-23009112 | Msa0844520:intron | 50.0% | |
| ! | AGGACTGGTGTCTTGAAACC+TGG | - | chr5_4:23009108-23009127 | Msa0844520:intron | 50.0% |
| !!! | GTGTTGACTTTTGCCCCAAC+TGG | - | chr5_4:23009135-23009154 | Msa0844520:intron | 50.0% |
| AAGACGTCACTTCACCTTGC+AGG | + | chr5_4:23009161-23009180 | None:intergenic | 50.0% | |
| ATTATCACCAGGAAGGGCCT+CGG | + | chr5_4:23009208-23009227 | None:intergenic | 50.0% | |
| ! | GCCCTTCCTGGTGATAATGT+GGG | - | chr5_4:23009210-23009229 | Msa0844520:intron | 50.0% |
| TGGGTGATGCTTGGAGTTTG+AGG | + | chr5_4:23009286-23009305 | None:intergenic | 50.0% | |
| TGTAAAGTGAGTGGCCTCCT+TGG | + | chr5_4:23009310-23009329 | None:intergenic | 50.0% | |
| AGCCATTTCCAATCCGACCA+GGG | + | chr5_4:23009356-23009375 | None:intergenic | 50.0% | |
| TAGCCATTTCCAATCCGACC+AGG | + | chr5_4:23009357-23009376 | None:intergenic | 50.0% | |
| GAGGTGTGGCAGTAAAGAAC+AGG | + | chr5_4:23009384-23009403 | None:intergenic | 50.0% | |
| AAACCTGACAGCAATGTGGG+AGG | + | chr5_4:23009403-23009422 | None:intergenic | 50.0% | |
| TGCTAAGCTTCTTGCCAAGG+TGG | - | chr5_4:23009422-23009441 | Msa0844520:intron | 50.0% | |
| CAGAGATATGCGTCGAACTG+TGG | - | chr5_4:23009584-23009603 | Msa0844520:intron | 50.0% | |
| ! | ATCTAGAACCCAGATCGGGA+AGG | + | chr5_4:23009748-23009767 | None:intergenic | 50.0% |
| ! | TCGGATCTAGAACCCAGATC+GGG | + | chr5_4:23009752-23009771 | None:intergenic | 50.0% |
| ! | GTCGGATCTAGAACCCAGAT+CGG | + | chr5_4:23009753-23009772 | None:intergenic | 50.0% |
| !! | GATCTGGGTTCTAGATCCGA+CGG | - | chr5_4:23009752-23009771 | Msa0844520:intron | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr5_4:23010739-23010758 | Msa0844520:intron | 50.0% | |
| AAGATATACTCCCTCCGTCC+CGG | + | chr5_4:23010756-23010775 | None:intergenic | 50.0% | |
| !! | TAGAGGAGGTGCCTTAGGAT+GGG | + | chr5_4:23011328-23011347 | None:intergenic | 50.0% |
| !! | ATAGAGGAGGTGCCTTAGGA+TGG | + | chr5_4:23011329-23011348 | None:intergenic | 50.0% |
| AGGTGCGCAAATATGATGCC+AGG | + | chr5_4:23011666-23011685 | None:intergenic | 50.0% | |
| TTGTCTCTGTCCCTCCTCTT+TGG | - | chr5_4:23011793-23011812 | Msa0844520:CDS | 50.0% | |
| TGTCTCTGTCCCTCCTCTTT+GGG | - | chr5_4:23011794-23011813 | Msa0844520:CDS | 50.0% | |
| CGGTATAACTATTCTGCCCG+CGG | + | chr5_4:23013247-23013266 | None:intergenic | 50.0% | |
| CGCGGGCAGAATAGTTATAC+CGG | - | chr5_4:23013245-23013264 | Msa0844520:five_prime_UTR | 50.0% | |
| TCTGGGAAGTCAACCACTGC+TGG | - | chr5_4:23008307-23008326 | Msa0844520:CDS | 55.0% | |
| !! | GGGCATCGATGATAGTGCAG+CGG | + | chr5_4:23008513-23008532 | None:intergenic | 55.0% |
| TGCACTATCATCGATGCCCC+CGG | - | chr5_4:23008514-23008533 | Msa0844520:intron | 55.0% | |
| GGCTCCAAAACCAGCATGAG+TGG | + | chr5_4:23008611-23008630 | None:intergenic | 55.0% | |
| ! | GCCCCTTTTCCTTCAAGCGT+AGG | - | chr5_4:23008818-23008837 | Msa0844520:intron | 55.0% |
| GCCTCTCCGATTACCACTTC+AGG | - | chr5_4:23009038-23009057 | Msa0844520:intron | 55.0% | |
| CCCTGAAGTGGTAATCGGAG+AGG | + | chr5_4:23009042-23009061 | None:intergenic | 55.0% | |
| TTCACCTTGCAGGCCAGTTG+GGG | + | chr5_4:23009151-23009170 | None:intergenic | 55.0% | |
| CTTCACCTTGCAGGCCAGTT+GGG | + | chr5_4:23009152-23009171 | None:intergenic | 55.0% | |
| ACTTCACCTTGCAGGCCAGT+TGG | + | chr5_4:23009153-23009172 | None:intergenic | 55.0% | |
| GGACCATGCAGATCTTTCCG+AGG | - | chr5_4:23009188-23009207 | Msa0844520:intron | 55.0% | |
| ! | GGCCCTTCCTGGTGATAATG+TGG | - | chr5_4:23009209-23009228 | Msa0844520:intron | 55.0% |
| TCTGATGCACATCTCAGCCG+AGG | - | chr5_4:23009252-23009271 | Msa0844520:intron | 55.0% | |
| GTTATCATCACGGGTCACCC+TGG | - | chr5_4:23009336-23009355 | Msa0844520:intron | 55.0% | |
| ! | CACCCTGGTCGGATTGGAAA+TGG | - | chr5_4:23009351-23009370 | Msa0844520:intron | 55.0% |
| TGACAGCAATGTGGGAGGTG+TGG | + | chr5_4:23009398-23009417 | None:intergenic | 55.0% | |
| ACACCTCCCACATTGCTGTC+AGG | - | chr5_4:23009397-23009416 | Msa0844520:intron | 55.0% | |
| GATGATTCCCACCAAGCCCA+TGG | - | chr5_4:23009515-23009534 | Msa0844520:intron | 55.0% | |
| ! | TCAACCACCATGGGCTTGGT+GGG | + | chr5_4:23009525-23009544 | None:intergenic | 55.0% |
| ACTCTCAACCACCATGGGCT+TGG | + | chr5_4:23009529-23009548 | None:intergenic | 55.0% | |
| ATGCGTCGAACTGTGGCTGT+TGG | - | chr5_4:23009591-23009610 | Msa0844520:intron | 55.0% | |
| TTCTAGATCCGACGGTGGCT+GGG | - | chr5_4:23009760-23009779 | Msa0844520:intron | 55.0% | |
| AGAAATAGCCCAGCCACCGT+CGG | + | chr5_4:23009771-23009790 | None:intergenic | 55.0% | |
| AAGAAGGAGGGAACCACCCA+AGG | + | chr5_4:23010320-23010339 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr5_4:23010544-23010563 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr5_4:23010743-23010762 | Msa0844520:intron | 55.0% | |
| CTGACAGCTTGAAGAGACCG+CGG | - | chr5_4:23013227-23013246 | Msa0844520:intron | 55.0% | |
| TGACAGCTTGAAGAGACCGC+GGG | - | chr5_4:23013228-23013247 | Msa0844520:intron | 55.0% | |
| ATACCGGTCACTTCTGGCAG+AGG | - | chr5_4:23013261-23013280 | Msa0844520:five_prime_UTR | 55.0% | |
| CTTCCTCTGCCAGAAGTGAC+CGG | + | chr5_4:23013267-23013286 | None:intergenic | 55.0% | |
| CTGGCAGAGGAAGCAGAGTT+TGG | - | chr5_4:23013274-23013293 | Msa0844520:five_prime_UTR | 55.0% | |
| CTCAAGGCTGAGCGCGAAAG+AGG | - | chr5_4:23008442-23008461 | Msa0844520:CDS | 60.0% | |
| ! | TTTGCCCCAACTGGCCTGCA+AGG | - | chr5_4:23009144-23009163 | Msa0844520:intron | 60.0% |
| GGGCCTCGGAAAGATCTGCA+TGG | + | chr5_4:23009194-23009213 | None:intergenic | 60.0% | |
| GATCTTTCCGAGGCCCTTCC+TGG | - | chr5_4:23009198-23009217 | Msa0844520:intron | 60.0% | |
| CTCCAAGCATCACCCAGCCA+AGG | - | chr5_4:23009290-23009309 | Msa0844520:intron | 60.0% | |
| CTCCTTGGCTGGGTGATGCT+TGG | + | chr5_4:23009295-23009314 | None:intergenic | 60.0% | |
| CAAGCATCACCCAGCCAAGG+AGG | - | chr5_4:23009293-23009312 | Msa0844520:intron | 60.0% | |
| AGTGAGTGGCCTCCTTGGCT+GGG | + | chr5_4:23009305-23009324 | None:intergenic | 60.0% | |
| AAGTGAGTGGCCTCCTTGGC+TGG | + | chr5_4:23009306-23009325 | None:intergenic | 60.0% | |
| TCATCACGGGTCACCCTGGT+CGG | - | chr5_4:23009340-23009359 | Msa0844520:intron | 60.0% | |
| GATTCCCACCAAGCCCATGG+TGG | - | chr5_4:23009518-23009537 | Msa0844520:intron | 60.0% | |
| CTCAACCACCATGGGCTTGG+TGG | + | chr5_4:23009526-23009545 | None:intergenic | 60.0% | |
| !! | CTGGGTTCTAGATCCGACGG+TGG | - | chr5_4:23009755-23009774 | Msa0844520:intron | 60.0% |
| ! | GTTCTAGATCCGACGGTGGC+TGG | - | chr5_4:23009759-23009778 | Msa0844520:intron | 60.0% |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr5_4:23010742-23010761 | Msa0844520:intron | 60.0% | |
| TGGGGATTGGGCGTCCAAAC+AGG | + | chr5_4:23011742-23011761 | None:intergenic | 60.0% | |
| TTTGGACGCCCAATCCCCAC+TGG | - | chr5_4:23011743-23011762 | Msa0844520:CDS | 60.0% | |
| CGCGGTCTCTTCAAGCTGTC+AGG | + | chr5_4:23013229-23013248 | None:intergenic | 60.0% | |
| TCATCGATGCCCCCGGACAC+AGG | - | chr5_4:23008521-23008540 | Msa0844520:intron | 65.0% | |
| CATCGATGCCCCCGGACACA+GGG | - | chr5_4:23008522-23008541 | Msa0844520:intron | 65.0% | |
| ACGGGTCACCCTGGTCGGAT+TGG | - | chr5_4:23009345-23009364 | Msa0844520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 23007611 | 23013317 | 23007611 | ID=Msa0844520;Name=Msa0844520 |
| chr5_4 | mRNA | 23007611 | 23013317 | 23007611 | ID=Msa0844520-mRNA-1;Parent=Msa0844520;Name=Msa0844520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=113|1|1|1|0.71|0.75|8|59|556 |
| chr5_4 | exon | 23007611 | 23007738 | 23007611 | ID=Msa0844520-mRNA-1:exon:9381;Parent=Msa0844520-mRNA-1 |
| chr5_4 | exon | 23008234 | 23008326 | 23008234 | ID=Msa0844520-mRNA-1:exon:9380;Parent=Msa0844520-mRNA-1 |
| chr5_4 | exon | 23008417 | 23008473 | 23008417 | ID=Msa0844520-mRNA-1:exon:9379;Parent=Msa0844520-mRNA-1 |
| chr5_4 | exon | 23008656 | 23008712 | 23008656 | ID=Msa0844520-mRNA-1:exon:9378;Parent=Msa0844520-mRNA-1 |
| chr5_4 | exon | 23009997 | 23010049 | 23009997 | ID=Msa0844520-mRNA-1:exon:9377;Parent=Msa0844520-mRNA-1 |
| chr5_4 | exon | 23011274 | 23012123 | 23011274 | ID=Msa0844520-mRNA-1:exon:9376;Parent=Msa0844520-mRNA-1 |
| chr5_4 | exon | 23012211 | 23012732 | 23012211 | ID=Msa0844520-mRNA-1:exon:9375;Parent=Msa0844520-mRNA-1 |
| chr5_4 | exon | 23013235 | 23013317 | 23013235 | ID=Msa0844520-mRNA-1:exon:9374;Parent=Msa0844520-mRNA-1 |
| chr5_4 | five_prime_UTR | 23013235 | 23013317 | 23013235 | ID=Msa0844520-mRNA-1:five_prime_utr;Parent=Msa0844520-mRNA-1 |
| chr5_4 | five_prime_UTR | 23012703 | 23012732 | 23012703 | ID=Msa0844520-mRNA-1:five_prime_utr;Parent=Msa0844520-mRNA-1 |
| chr5_4 | CDS | 23012211 | 23012702 | 23012211 | ID=Msa0844520-mRNA-1:cds;Parent=Msa0844520-mRNA-1 |
| chr5_4 | CDS | 23011274 | 23012123 | 23011274 | ID=Msa0844520-mRNA-1:cds;Parent=Msa0844520-mRNA-1 |
| chr5_4 | CDS | 23009997 | 23010049 | 23009997 | ID=Msa0844520-mRNA-1:cds;Parent=Msa0844520-mRNA-1 |
| chr5_4 | CDS | 23008656 | 23008712 | 23008656 | ID=Msa0844520-mRNA-1:cds;Parent=Msa0844520-mRNA-1 |
| chr5_4 | CDS | 23008417 | 23008473 | 23008417 | ID=Msa0844520-mRNA-1:cds;Parent=Msa0844520-mRNA-1 |
| chr5_4 | CDS | 23008234 | 23008326 | 23008234 | ID=Msa0844520-mRNA-1:cds;Parent=Msa0844520-mRNA-1 |
| chr5_4 | CDS | 23007670 | 23007738 | 23007670 | ID=Msa0844520-mRNA-1:cds;Parent=Msa0844520-mRNA-1 |
| chr5_4 | three_prime_UTR | 23007611 | 23007669 | 23007611 | ID=Msa0844520-mRNA-1:three_prime_utr;Parent=Msa0844520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
