Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844460 | AES96456.2 | 79.218 | 486 | 64 | 1 | 1 | 449 | 1 | 486 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844460 | sp|O49169|EF1A_MANES | 73.441 | 433 | 115 | 0 | 13 | 445 | 3 | 435 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844460 | G7K8A4 | 79.218 | 486 | 64 | 1 | 1 | 449 | 1 | 486 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0844410 | Msa0844460 | 0.820599 | 6.298244e-53 | -8.615850e-47 |
| Msa0844420 | Msa0844460 | 0.819580 | 1.078147e-52 | -8.615850e-47 |
| Msa0844450 | Msa0844460 | 0.836729 | 7.891471e-57 | -8.615850e-47 |
| Msa0844460 | Msa0844470 | 0.835183 | 1.946342e-56 | -8.615850e-47 |
| Msa0844460 | Msa0844490 | 0.817173 | 3.783538e-52 | -8.615850e-47 |
| Msa0844460 | Msa0844510 | 0.898036 | 7.860902e-77 | -8.615850e-47 |
| Msa0844460 | Msa0844520 | 0.935591 | 6.661158e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844460 | MtrunA17_Chr5g0415391 | 85.500 | 400 | 58 | 0 | 49 | 448 | 1 | 400 | 0.0 | 712 |
| Msa0844460 | MtrunA17_Chr1g0200121 | 74.827 | 433 | 109 | 0 | 13 | 445 | 3 | 435 | 0.0 | 667 |
| Msa0844460 | MtrunA17_Chr1g0200071 | 74.827 | 433 | 109 | 0 | 13 | 445 | 3 | 435 | 0.0 | 667 |
| Msa0844460 | MtrunA17_Chr1g0200091 | 74.827 | 433 | 109 | 0 | 13 | 445 | 3 | 435 | 0.0 | 667 |
| Msa0844460 | MtrunA17_Chr4g0005781 | 73.793 | 435 | 114 | 0 | 13 | 447 | 3 | 437 | 0.0 | 666 |
| Msa0844460 | MtrunA17_Chr6g0458111 | 72.979 | 433 | 117 | 0 | 13 | 445 | 3 | 435 | 0.0 | 657 |
| Msa0844460 | MtrunA17_Chr6g0458091 | 72.979 | 433 | 117 | 0 | 13 | 445 | 3 | 435 | 0.0 | 657 |
| Msa0844460 | MtrunA17_Chr8g0340771 | 71.659 | 434 | 121 | 1 | 13 | 444 | 3 | 436 | 0.0 | 628 |
| Msa0844460 | MtrunA17_Chr1g0204031 | 60.073 | 551 | 198 | 7 | 13 | 546 | 3 | 548 | 0.0 | 626 |
| Msa0844460 | MtrunA17_Chr1g0193591 | 69.863 | 438 | 132 | 0 | 13 | 450 | 3 | 440 | 0.0 | 624 |
| Msa0844460 | MtrunA17_Chr1g0156421 | 67.202 | 436 | 143 | 0 | 13 | 448 | 3 | 438 | 0.0 | 603 |
| Msa0844460 | MtrunA17_Chr1g0150331 | 69.266 | 436 | 105 | 2 | 13 | 445 | 3 | 412 | 0.0 | 597 |
| Msa0844460 | MtrunA17_Chr1g0196251 | 60.050 | 403 | 133 | 2 | 14 | 415 | 5 | 380 | 3.35e-166 | 477 |
| Msa0844460 | MtrunA17_Chr8g0336511 | 66.873 | 323 | 106 | 1 | 15 | 336 | 70 | 392 | 1.57e-151 | 440 |
| Msa0844460 | MtrunA17_Chr2g0319341 | 65.244 | 328 | 112 | 1 | 112 | 437 | 1 | 328 | 3.95e-150 | 438 |
| Msa0844460 | MtrunA17_Chr2g0298371 | 59.692 | 325 | 112 | 2 | 112 | 434 | 1 | 308 | 4.88e-129 | 379 |
| Msa0844460 | MtrunA17_Chr2g0318291 | 68.636 | 220 | 66 | 2 | 15 | 233 | 7 | 224 | 9.29e-99 | 298 |
| Msa0844460 | MtrunA17_Chr8g0340371 | 60.084 | 238 | 92 | 2 | 13 | 249 | 3 | 238 | 5.69e-93 | 284 |
| Msa0844460 | MtrunA17_Chr1g0210931 | 54.710 | 276 | 75 | 3 | 165 | 439 | 1 | 227 | 8.88e-86 | 266 |
| Msa0844460 | MtrunA17_Chr8g0380091 | 37.176 | 425 | 259 | 7 | 17 | 436 | 275 | 696 | 2.75e-83 | 273 |
| Msa0844460 | MtrunA17_Chr6g0483121 | 35.514 | 428 | 266 | 6 | 15 | 436 | 89 | 512 | 7.85e-81 | 262 |
| Msa0844460 | MtrunA17_Chr1g0204041 | 71.605 | 162 | 45 | 1 | 13 | 173 | 3 | 164 | 1.48e-76 | 239 |
| Msa0844460 | MtrunA17_Chr8g0392641 | 34.419 | 430 | 272 | 6 | 11 | 434 | 140 | 565 | 1.11e-74 | 247 |
| Msa0844460 | MtrunA17_Chr2g0318281 | 63.636 | 187 | 68 | 0 | 253 | 439 | 5 | 191 | 7.18e-74 | 234 |
| Msa0844460 | MtrunA17_Chr1g0200111 | 59.659 | 176 | 61 | 1 | 274 | 439 | 1 | 176 | 1.10e-64 | 209 |
| Msa0844460 | MtrunA17_Chr1g0156411 | 68.571 | 140 | 44 | 0 | 16 | 155 | 10 | 149 | 7.01e-63 | 203 |
| Msa0844460 | MtrunA17_Chr8g0340361 | 55.801 | 181 | 64 | 3 | 274 | 439 | 1 | 180 | 4.17e-57 | 189 |
| Msa0844460 | MtrunA17_Chr4g0026961 | 52.809 | 178 | 71 | 3 | 221 | 395 | 45 | 212 | 1.14e-47 | 165 |
| Msa0844460 | MtrunA17_Chr2g0298381 | 76.842 | 95 | 22 | 0 | 15 | 109 | 5 | 99 | 7.72e-44 | 150 |
| Msa0844460 | MtrunA17_Chr8g0341021 | 71.287 | 101 | 29 | 0 | 13 | 113 | 4 | 104 | 9.36e-43 | 148 |
| Msa0844460 | MtrunA17_Chr8g0341041 | 38.356 | 219 | 72 | 4 | 223 | 441 | 2 | 157 | 1.07e-35 | 131 |
| Msa0844460 | MtrunA17_Chr7g0259481 | 28.802 | 434 | 257 | 14 | 13 | 439 | 59 | 447 | 1.97e-34 | 135 |
| Msa0844460 | MtrunA17_Chr2g0319351 | 78.082 | 73 | 16 | 0 | 15 | 87 | 5 | 77 | 1.18e-31 | 117 |
| Msa0844460 | MtrunA17_Chr3g0116821 | 28.667 | 450 | 247 | 17 | 10 | 436 | 86 | 484 | 1.06e-30 | 125 |
| Msa0844460 | MtrunA17_Chr1g0211481 | 67.089 | 79 | 26 | 0 | 15 | 93 | 4 | 82 | 9.35e-29 | 109 |
| Msa0844460 | MtrunA17_Chr2g0287231 | 30.992 | 242 | 133 | 8 | 17 | 254 | 16 | 227 | 3.01e-25 | 104 |
| Msa0844460 | MtrunA17_Chr1g0200101 | 68.750 | 64 | 20 | 0 | 183 | 246 | 50 | 113 | 2.01e-22 | 92.8 |
| Msa0844460 | MtrunA17_Chr1g0200101 | 57.143 | 49 | 21 | 0 | 31 | 79 | 2 | 50 | 2.32e-11 | 61.2 |
| Msa0844460 | MtrunA17_Chr7g0261801 | 63.636 | 66 | 21 | 1 | 165 | 230 | 1 | 63 | 2.88e-18 | 79.7 |
| Msa0844460 | MtrunA17_Chr3g0130991 | 25.915 | 328 | 170 | 12 | 19 | 330 | 85 | 355 | 5.65e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844460 | AT1G07920.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT1G07940.4 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT1G07940.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT1G07940.2 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT1G07940.3 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT5G60390.3 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT5G60390.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT5G60390.2 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT1G07930.1 | 72.748 | 433 | 118 | 0 | 13 | 445 | 3 | 435 | 0.0 | 655 |
| Msa0844460 | AT1G07930.2 | 75.494 | 253 | 62 | 0 | 13 | 265 | 3 | 255 | 1.20e-135 | 399 |
| Msa0844460 | AT1G07930.2 | 68.571 | 105 | 33 | 0 | 341 | 445 | 254 | 358 | 1.23e-42 | 157 |
| Msa0844460 | AT5G10630.1 | 34.590 | 451 | 266 | 10 | 1 | 439 | 230 | 663 | 1.06e-80 | 266 |
| Msa0844460 | AT5G10630.5 | 34.590 | 451 | 266 | 10 | 1 | 439 | 231 | 664 | 1.08e-80 | 266 |
| Msa0844460 | AT5G10630.2 | 34.590 | 451 | 266 | 10 | 1 | 439 | 231 | 664 | 1.08e-80 | 266 |
| Msa0844460 | AT5G10630.3 | 34.590 | 451 | 266 | 10 | 1 | 439 | 301 | 734 | 3.90e-80 | 266 |
| Msa0844460 | AT5G10630.4 | 34.590 | 451 | 266 | 10 | 1 | 439 | 306 | 739 | 6.10e-80 | 266 |
| Msa0844460 | AT1G18070.1 | 32.723 | 437 | 286 | 5 | 3 | 434 | 87 | 520 | 8.25e-77 | 252 |
| Msa0844460 | AT1G18070.2 | 32.723 | 437 | 286 | 5 | 3 | 434 | 87 | 520 | 8.25e-77 | 252 |
| Msa0844460 | AT1G18070.3 | 32.438 | 447 | 285 | 6 | 3 | 434 | 87 | 531 | 6.57e-74 | 245 |
| Msa0844460 | AT1G35550.1 | 62.626 | 99 | 37 | 0 | 347 | 445 | 3 | 101 | 4.43e-36 | 130 |
| Msa0844460 | AT4G20360.1 | 28.821 | 458 | 242 | 15 | 10 | 439 | 73 | 474 | 2.39e-33 | 133 |
| Msa0844460 | AT4G20360.2 | 28.821 | 458 | 242 | 15 | 10 | 439 | 73 | 474 | 2.39e-33 | 133 |
| Msa0844460 | AT4G02930.1 | 28.506 | 435 | 258 | 15 | 13 | 439 | 63 | 452 | 8.66e-33 | 131 |
Find 170 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCTTTCTTCAAGAATT+TGG | 0.057481 | 5_4:+22910571 | None:intergenic |
| ATACACCCGTTTGAATAATT+TGG | 0.152520 | 5_4:-22908056 | Msa0844460:CDS |
| CATATTAACATTGTGGTTAT+TGG | 0.173948 | 5_4:-22911775 | Msa0844460:CDS |
| TTCACGGATCTGACCATTAT+TGG | 0.182143 | 5_4:+22911411 | None:intergenic |
| ACAAAGAACAATGATGTATT+TGG | 0.187721 | 5_4:-22907837 | Msa0844460:CDS |
| GATTCCACTCATGCTGGTTT+TGG | 0.235449 | 5_4:-22911445 | Msa0844460:CDS |
| AGCCCTCTACTAAACATATT+TGG | 0.259900 | 5_4:-22911099 | Msa0844460:CDS |
| AAATATTAGATGTAGATAAA+TGG | 0.292587 | 5_4:+22906833 | None:intergenic |
| AAGTGAGTGGCCTCCTTGGC+TGG | 0.298507 | 5_4:+22910746 | None:intergenic |
| AATACCTCCATGTTTGTATC+AGG | 0.316782 | 5_4:-22906934 | Msa0844460:three_prime_UTR |
| CTTCACCTTGCAGGCCAGTT+GGG | 0.319600 | 5_4:+22910900 | None:intergenic |
| TCACCTTTCTTCAAGAATTT+GGG | 0.321325 | 5_4:+22910572 | None:intergenic |
| TTCATTAAGAACATGATTAC+TGG | 0.322781 | 5_4:-22911502 | Msa0844460:CDS |
| GATCTTTCCGAGGCCCTTCC+TGG | 0.323503 | 5_4:-22910851 | Msa0844460:CDS |
| TTCCTCTGATTCTCTCTTCA+AGG | 0.327507 | 5_4:+22907659 | None:intergenic |
| GCCTCTCCGATTACCACTTC+AGG | 0.334259 | 5_4:-22911011 | Msa0844460:CDS |
| CACTTTCTCTTCAAGCTGTC+AGG | 0.334405 | 5_4:+22907111 | None:intergenic |
| CTTCAATTTGTTCCCATCTC+TGG | 0.336935 | 5_4:-22911145 | Msa0844460:CDS |
| CTGGCAGAGGAAGCAGAGTT+TGG | 0.337313 | 5_4:-22907027 | Msa0844460:three_prime_UTR |
| ATAGTTATACCGGTCACTTC+TGG | 0.341278 | 5_4:-22907046 | Msa0844460:exon |
| CAATGCAAATTTGTATCTAC+TGG | 0.342456 | 5_4:-22908085 | Msa0844460:CDS |
| GTCTACAAGATTGGAGGAAT+TGG | 0.348403 | 5_4:-22910986 | Msa0844460:CDS |
| GGAGCCGGTATTTCCAATAA+TGG | 0.356707 | 5_4:-22911424 | Msa0844460:CDS |
| CGCGGTCTCTTCAAGCTGTC+AGG | 0.357135 | 5_4:+22907075 | None:intergenic |
| GCTCTCCTTGCTTACTCTCT+TGG | 0.359046 | 5_4:-22911385 | Msa0844460:CDS |
| ATAGCCAACCTTCATCAAAA+AGG | 0.369621 | 5_4:+22911180 | None:intergenic |
| GCCTCTTAGGCTCTTTGATT+CGG | 0.381289 | 5_4:+22911044 | None:intergenic |
| CTCCTTGGCTGGGTGATGCT+TGG | 0.382356 | 5_4:+22910757 | None:intergenic |
| GCAAAAGTCAACACCATTCC+AGG | 0.385507 | 5_4:+22910923 | None:intergenic |
| TTCTTCATACCTACGCTTGA+AGG | 0.390441 | 5_4:+22911222 | None:intergenic |
| GGTCATTTGTTCTACAAGCT+TGG | 0.401050 | 5_4:-22911721 | Msa0844460:CDS |
| AAGACGTCACTTCACCTTGC+AGG | 0.402363 | 5_4:+22910891 | None:intergenic |
| ATACCTACGCTTGAAGGAAA+AGG | 0.403847 | 5_4:+22911228 | None:intergenic |
| CACCCTGGTCGGATTGGAAA+TGG | 0.421161 | 5_4:-22910698 | Msa0844460:CDS |
| GGAACAAATTGAAGTTCGTC+TGG | 0.423506 | 5_4:+22911154 | None:intergenic |
| CACATTTATATTCATCATGT+TGG | 0.425986 | 5_4:+22906966 | None:intergenic |
| AACAATTATCCTAGTGAAAG+TGG | 0.427073 | 5_4:-22910416 | Msa0844460:intron |
| CTTAATGAAATCCCTGTGTC+CGG | 0.429384 | 5_4:+22911516 | None:intergenic |
| TACCTCCAAATTATTCAAAC+GGG | 0.435321 | 5_4:+22908051 | None:intergenic |
| TCTTGACAGATGGATGCCTT+TGG | 0.440301 | 5_4:-22911253 | Msa0844460:intron |
| AGGCATTTCAAAGATGGAAA+TGG | 0.444529 | 5_4:-22911698 | Msa0844460:CDS |
| CTGTGGCTGTAGGATGTGTT+AGG | 0.449006 | 5_4:-22910961 | Msa0844460:CDS |
| TACCTACGCTTGAAGGAAAA+GGG | 0.449319 | 5_4:+22911229 | None:intergenic |
| GCTTGGAGGCATTTCAAAGA+TGG | 0.452315 | 5_4:-22911704 | Msa0844460:CDS |
| ACTTCACCTTGCAGGCCAGT+TGG | 0.456497 | 5_4:+22910899 | None:intergenic |
| CTTCAGGGTGTCTACAAGAT+TGG | 0.458119 | 5_4:-22910995 | Msa0844460:CDS |
| CTCAACCACCATGGGCTTGG+TGG | 0.460687 | 5_4:+22910526 | None:intergenic |
| ACACCTCCCACATTGCTGTC+AGG | 0.465569 | 5_4:-22910652 | Msa0844460:CDS |
| ATCGGAGAAGTTTACCTTGA+AGG | 0.465772 | 5_4:+22912351 | None:intergenic |
| ACCGAATCAAAGAGCCTAAG+AGG | 0.467194 | 5_4:-22911045 | Msa0844460:CDS |
| ATCGTTGATTCCACTCATGC+TGG | 0.468387 | 5_4:-22911451 | Msa0844460:CDS |
| TTACCTCCAAATTATTCAAA+CGG | 0.469205 | 5_4:+22908050 | None:intergenic |
| TTAATGAAATCCCTGTGTCC+GGG | 0.473933 | 5_4:+22911517 | None:intergenic |
| ATCTCCCTTAAAACCAGAGA+TGG | 0.476884 | 5_4:+22911132 | None:intergenic |
| GATGATAGTGCAGCGGTACT+TGG | 0.476978 | 5_4:+22911546 | None:intergenic |
| AGACACCCTGAAGTGGTAAT+CGG | 0.478400 | 5_4:+22911005 | None:intergenic |
| ACGGGTCACCCTGGTCGGAT+TGG | 0.478814 | 5_4:-22910704 | Msa0844460:CDS |
| CTGACCATTATTGGAAATAC+CGG | 0.479403 | 5_4:+22911420 | None:intergenic |
| TCTGGGAAGTCAACCACTGC+TGG | 0.494688 | 5_4:-22911742 | Msa0844460:CDS |
| TAAGAAGAGCACAATCAGCT+TGG | 0.494803 | 5_4:+22911473 | None:intergenic |
| GTTATTGGTCATGTCAACTC+TGG | 0.498667 | 5_4:-22911760 | Msa0844460:CDS |
| ACTCTCAACCACCATGGGCT+TGG | 0.499650 | 5_4:+22910523 | None:intergenic |
| CACCCGTTTGAATAATTTGG+AGG | 0.500005 | 5_4:-22908053 | Msa0844460:intron |
| CCTCTCCGATTACCACTTCA+GGG | 0.501098 | 5_4:-22911010 | Msa0844460:CDS |
| CATTTGTTCTACAAGCTTGG+AGG | 0.502015 | 5_4:-22911718 | Msa0844460:CDS |
| GGCTTGTCTGATAGCCTCTT+AGG | 0.504279 | 5_4:+22911031 | None:intergenic |
| TCAGATGGCAAAATCAATGA+TGG | 0.505168 | 5_4:-22907703 | Msa0844460:intron |
| TACCAAATATGTTTAGTAGA+GGG | 0.505176 | 5_4:+22911097 | None:intergenic |
| GGCCCTTCCTGGTGATAATG+TGG | 0.507215 | 5_4:-22910840 | Msa0844460:CDS |
| GTTTGCTAAGCTTCTTGCCA+AGG | 0.508288 | 5_4:-22910630 | Msa0844460:CDS |
| TTTCAACGCAGCGTCCTTCA+AGG | 0.511399 | 5_4:-22912365 | Msa0844460:intron |
| TGTAAAGTGAGTGGCCTCCT+TGG | 0.513035 | 5_4:+22910742 | None:intergenic |
| TCATTAAGAACATGATTACT+GGG | 0.515556 | 5_4:-22911501 | Msa0844460:CDS |
| ATTATCACCAGGAAGGGCCT+CGG | 0.515616 | 5_4:+22910844 | None:intergenic |
| AAGAAGAGCACAATCAGCTT+GGG | 0.517444 | 5_4:+22911474 | None:intergenic |
| AGGAGTAATGGATAAAGAAG+AGG | 0.522331 | 5_4:-22911830 | Msa0844460:exon |
| TGGGTGATGCTTGGAGTTTG+AGG | 0.523276 | 5_4:+22910766 | None:intergenic |
| AGTGAGTGGCCTCCTTGGCT+GGG | 0.526938 | 5_4:+22910747 | None:intergenic |
| GAGGTGTGGCAGTAAAGAAC+AGG | 0.530254 | 5_4:+22910668 | None:intergenic |
| CTCAAGGCTGAGCGCGAAAG+AGG | 0.530816 | 5_4:-22911607 | Msa0844460:CDS |
| GAGCCCAAATTCTTGAAGAA+AGG | 0.535406 | 5_4:-22910575 | Msa0844460:CDS |
| TTTGCCCCAACTGGCCTGCA+AGG | 0.538006 | 5_4:-22910905 | Msa0844460:CDS |
| AAAGGTTCATATTAACATTG+TGG | 0.540926 | 5_4:-22911782 | Msa0844460:CDS |
| TAGCCATTTCCAATCCGACC+AGG | 0.541629 | 5_4:+22910695 | None:intergenic |
| TTCGGTTAAGAGCTTCAAGA+AGG | 0.544122 | 5_4:+22911062 | None:intergenic |
| CAGGGTGTCTACAAGATTGG+AGG | 0.544955 | 5_4:-22910992 | Msa0844460:CDS |
| GTACCAAATATGTTTAGTAG+AGG | 0.546352 | 5_4:+22911096 | None:intergenic |
| ATAAGCTTGAGTCACTTCGC+AGG | 0.546363 | 5_4:-22909536 | Msa0844460:CDS |
| ACTTAAAGTAGAGCTTGATA+AGG | 0.546693 | 5_4:-22907811 | Msa0844460:intron |
| ACATCTCAAGTTATCATCAC+GGG | 0.546855 | 5_4:-22910722 | Msa0844460:CDS |
| CTTCCTCTGCCAGAAGTGAC+CGG | 0.547688 | 5_4:+22907037 | None:intergenic |
| AATGCAAATTTGTATCTACT+GGG | 0.547814 | 5_4:-22908084 | Msa0844460:CDS |
| TTCACCTTGCAGGCCAGTTG+GGG | 0.547998 | 5_4:+22910901 | None:intergenic |
| TCAACCACCATGGGCTTGGT+GGG | 0.551057 | 5_4:+22910527 | None:intergenic |
| GCATATCTCTGACAATAAAA+CGG | 0.553611 | 5_4:+22910477 | None:intergenic |
| AAAATCAATGATGGAACTCA+AGG | 0.554509 | 5_4:-22907694 | Msa0844460:CDS |
| AAGCAAGGAGAGCATGTTCA+CGG | 0.554818 | 5_4:+22911395 | None:intergenic |
| TGCAAATTTGTATCTACTGG+GGG | 0.558734 | 5_4:-22908082 | Msa0844460:CDS |
| ATACCGGTCACTTCTGGCAG+AGG | 0.559989 | 5_4:-22907040 | Msa0844460:three_prime_UTR |
| TGCACTATCATCGATGCCCC+CGG | 0.562583 | 5_4:-22911535 | Msa0844460:CDS |
| ACAATAAAACGGCCAAGTGA+AGG | 0.563719 | 5_4:+22910488 | None:intergenic |
| AGCAAACCTGACAGCAATGT+GGG | 0.564417 | 5_4:+22910646 | None:intergenic |
| AGGACTGGTGTCTTGAAACC+TGG | 0.565768 | 5_4:-22910941 | Msa0844460:CDS |
| GTTAAGAGCTTCAAGAAGGG+TGG | 0.567132 | 5_4:+22911066 | None:intergenic |
| TAATGAAATCCCTGTGTCCG+GGG | 0.570266 | 5_4:+22911518 | None:intergenic |
| TGAAGTGACGTCTTTGCAGA+TGG | 0.570747 | 5_4:-22910882 | Msa0844460:CDS |
| GGCTCCAAAACCAGCATGAG+TGG | 0.575911 | 5_4:+22911441 | None:intergenic |
| CGCGGGCAGAATAGTTATAC+CGG | 0.576267 | 5_4:-22907056 | Msa0844460:exon |
| GCTGTAGGATGTGTTAGGAC+TGG | 0.580546 | 5_4:-22910956 | Msa0844460:CDS |
| ATGCGTCGAACTGTGGCTGT+TGG | 0.581560 | 5_4:-22910458 | Msa0844460:CDS |
| AGGATTCATTCAAGTATGCG+TGG | 0.581569 | 5_4:-22911642 | Msa0844460:CDS |
| GCCCTTCCTGGTGATAATGT+GGG | 0.582437 | 5_4:-22910839 | Msa0844460:CDS |
| GTGTCGGAATAAAGAGCTGA+TGG | 0.583430 | 5_4:-22909505 | Msa0844460:intron |
| TCCCACATTATCACCAGGAA+GGG | 0.585065 | 5_4:+22910838 | None:intergenic |
| ATCCTTGAAGAGAGAATCAG+AGG | 0.587146 | 5_4:-22907661 | Msa0844460:CDS |
| TGCTAAGCTTCTTGCCAAGG+TGG | 0.590482 | 5_4:-22910627 | Msa0844460:CDS |
| TCATCACGGGTCACCCTGGT+CGG | 0.593293 | 5_4:-22910709 | Msa0844460:CDS |
| TGACACCAAGAGAGTAAGCA+AGG | 0.593570 | 5_4:+22911380 | None:intergenic |
| GTTATCTTACCACTTTCACT+AGG | 0.595956 | 5_4:+22910407 | None:intergenic |
| TACATCTCAAGTTATCATCA+CGG | 0.596275 | 5_4:-22910723 | Msa0844460:CDS |
| CTCCAAGCATCACCCAGCCA+AGG | 0.596291 | 5_4:-22910759 | Msa0844460:CDS |
| TGACAGCTTGAAGAGACCGC+GGG | 0.598440 | 5_4:-22907073 | Msa0844460:CDS |
| TTATTGGTCATGTCAACTCT+GGG | 0.598528 | 5_4:-22911759 | Msa0844460:CDS |
| GGATTCATTCAAGTATGCGT+GGG | 0.601005 | 5_4:-22911641 | Msa0844460:CDS |
| TCTCCCTTAAAACCAGAGAT+GGG | 0.602080 | 5_4:+22911133 | None:intergenic |
| GTTATCATCACGGGTCACCC+TGG | 0.603187 | 5_4:-22910713 | Msa0844460:CDS |
| TGGTGTCTTGAAACCTGGAA+TGG | 0.603925 | 5_4:-22910936 | Msa0844460:CDS |
| ATCCCACATTATCACCAGGA+AGG | 0.604739 | 5_4:+22910837 | None:intergenic |
| GATGATTCCCACCAAGCCCA+TGG | 0.606444 | 5_4:-22910534 | Msa0844460:CDS |
| ACTAAACATATTTGGTACAA+AGG | 0.606611 | 5_4:-22911091 | Msa0844460:CDS |
| AAATTCTTGAAGAAAGGTGA+TGG | 0.611109 | 5_4:-22910569 | Msa0844460:CDS |
| AGTTTGAGGCAACATAGCCT+CGG | 0.617398 | 5_4:+22910780 | None:intergenic |
| TTCTTGAAGAAAGGTGATGG+TGG | 0.618680 | 5_4:-22910566 | Msa0844460:CDS |
| CTTGAAGGAAAAGGGGCCAA+AGG | 0.620399 | 5_4:+22911237 | None:intergenic |
| GTGGGTTCTTGACAAACTCA+AGG | 0.622484 | 5_4:-22911623 | Msa0844460:CDS |
| CATGTTTGTATCAGGCATAG+TGG | 0.625197 | 5_4:-22906926 | Msa0844460:three_prime_UTR |
| TTAAGAGCTTCAAGAAGGGT+GGG | 0.626591 | 5_4:+22911067 | None:intergenic |
| TAAGCTTGAGTCACTTCGCA+GGG | 0.626662 | 5_4:-22909535 | Msa0844460:CDS |
| TCGGTTAAGAGCTTCAAGAA+GGG | 0.627314 | 5_4:+22911063 | None:intergenic |
| CACTATGCCTGATACAAACA+TGG | 0.627836 | 5_4:+22906927 | None:intergenic |
| TGCGCATATGAAGTTAGTTG+AGG | 0.631427 | 5_4:-22907628 | Msa0844460:intron |
| CAAGCATCACCCAGCCAAGG+AGG | 0.631735 | 5_4:-22910756 | Msa0844460:CDS |
| CAGAGATATGCGTCGAACTG+TGG | 0.637355 | 5_4:-22910465 | Msa0844460:CDS |
| CTGACAGCTTGAAGAGACCG+CGG | 0.645270 | 5_4:-22907074 | Msa0844460:CDS |
| ATCTTGTAGACACCCTGAAG+TGG | 0.645867 | 5_4:+22910998 | None:intergenic |
| AATGATCTGCTGCTGCAACA+AGG | 0.646976 | 5_4:-22911353 | Msa0844460:intron |
| TAAAGCTGCTGAGTTAAACA+AGG | 0.647648 | 5_4:-22911662 | Msa0844460:CDS |
| GAAAATCCCACATTATCACC+AGG | 0.648840 | 5_4:+22910833 | None:intergenic |
| GGAATTGGAACTGTGGCTGT+AGG | 0.649538 | 5_4:-22910971 | Msa0844460:CDS |
| TGACAGCAATGTGGGAGGTG+TGG | 0.650950 | 5_4:+22910654 | None:intergenic |
| ATCAATGATGGAACTCAAGG+AGG | 0.655225 | 5_4:-22907691 | Msa0844460:CDS |
| CCCTGAAGTGGTAATCGGAG+AGG | 0.655678 | 5_4:+22911010 | None:intergenic |
| ACCTACGCTTGAAGGAAAAG+GGG | 0.656499 | 5_4:+22911230 | None:intergenic |
| TAGCAAACCTGACAGCAATG+TGG | 0.658976 | 5_4:+22910645 | None:intergenic |
| AATGAAATCCCTGTGTCCGG+GGG | 0.661737 | 5_4:+22911519 | None:intergenic |
| ATGCAAATTTGTATCTACTG+GGG | 0.663449 | 5_4:-22908083 | Msa0844460:CDS |
| TCTGATGCACATCTCAGCCG+AGG | 0.666582 | 5_4:-22910797 | Msa0844460:CDS |
| GCAAATTTGTATCTACTGGG+GGG | 0.670792 | 5_4:-22908081 | Msa0844460:CDS |
| GTAGAACAAATGACCAGCAG+TGG | 0.675239 | 5_4:+22911729 | None:intergenic |
| TTCGCAGGGAGTTACAGTGT+CGG | 0.677685 | 5_4:-22909521 | Msa0844460:CDS |
| CGGTATAACTATTCTGCCCG+CGG | 0.679712 | 5_4:+22907057 | None:intergenic |
| GGACCATGCAGATCTTTCCG+AGG | 0.685917 | 5_4:-22910861 | Msa0844460:CDS |
| AGCCATTTCCAATCCGACCA+GGG | 0.687901 | 5_4:+22910696 | None:intergenic |
| GGGCCTCGGAAAGATCTGCA+TGG | 0.692530 | 5_4:+22910858 | None:intergenic |
| AAACCTGACAGCAATGTGGG+AGG | 0.700136 | 5_4:+22910649 | None:intergenic |
| AACTTGAGATGTAAAGTGAG+TGG | 0.701077 | 5_4:+22910733 | None:intergenic |
| GATTGGAGGAATTGGAACTG+TGG | 0.703844 | 5_4:-22910978 | Msa0844460:CDS |
| GGGCATCGATGATAGTGCAG+CGG | 0.718267 | 5_4:+22911539 | None:intergenic |
| GATTCCCACCAAGCCCATGG+TGG | 0.723849 | 5_4:-22910531 | Msa0844460:CDS |
| TATGCCTGATACAAACATGG+AGG | 0.752262 | 5_4:+22906930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTACTTGTATTAATT+TGG | - | chr5_4:22909526-22909545 | Msa0844460:CDS | 10.0% |
| !!! | ATTTTTACTTGTATTAATTT+GGG | - | chr5_4:22909527-22909546 | Msa0844460:CDS | 10.0% |
| !! | TCAAAGAAAATTAATTTATT+CGG | + | chr5_4:22910098-22910117 | None:intergenic | 10.0% |
| !! | TATTCCATAAAAATAAATAA+AGG | - | chr5_4:22911693-22911712 | Msa0844460:CDS | 10.0% |
| !!! | AAATCCTTTATTTATTTTTA+TGG | + | chr5_4:22911700-22911719 | None:intergenic | 10.0% |
| !!! | TTTTTATGATTTCAAGTTTT+AGG | - | chr5_4:22907408-22907427 | Msa0844460:intron | 15.0% |
| !!! | TAGTTTTCAAAAAAAAGAAA+AGG | - | chr5_4:22907458-22907477 | Msa0844460:intron | 15.0% |
| !! | AAGTCATCTTAATTATATTT+AGG | - | chr5_4:22910360-22910379 | Msa0844460:intron | 15.0% |
| !! | AGTCATCTTAATTATATTTA+GGG | - | chr5_4:22910361-22910380 | Msa0844460:intron | 15.0% |
| !!! | TGATTTTTTTTGCAATTTAT+AGG | - | chr5_4:22910653-22910672 | Msa0844460:CDS | 15.0% |
| !!! | TATTTTTATGGAATAGTAAA+TGG | + | chr5_4:22911688-22911707 | None:intergenic | 15.0% |
| !!! | CATAAAAAATATTTGACTTT+AGG | - | chr5_4:22911783-22911802 | Msa0844460:CDS | 15.0% |
| !!! | TAAGAAAAGTGTTTATATAA+TGG | + | chr5_4:22911996-22912015 | None:intergenic | 15.0% |
| !! | AAATATTAGATGTAGATAAA+TGG | + | chr5_4:22912428-22912447 | None:intergenic | 15.0% |
| !!! | ATTCGTTTATGATTTTGAAT+TGG | - | chr5_4:22907088-22907107 | Msa0844460:CDS | 20.0% |
| !!! | GTAGTTTTTATTTGTTATGA+TGG | - | chr5_4:22907110-22907129 | Msa0844460:CDS | 20.0% |
| !! | AAAAAAAAAAACACAAACGA+TGG | + | chr5_4:22907152-22907171 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAGTAATACTGTT+TGG | - | chr5_4:22909580-22909599 | Msa0844460:intron | 20.0% |
| !!! | TTTTTTGAGTAATACTGTTT+GGG | - | chr5_4:22909581-22909600 | Msa0844460:intron | 20.0% |
| !!! | TTTTTGGAATATTGAATATC+TGG | - | chr5_4:22909630-22909649 | Msa0844460:intron | 20.0% |
| !!! | TCTTTAGAATTTTGATACAA+AGG | + | chr5_4:22909895-22909914 | None:intergenic | 20.0% |
| !!! | TTGTATCAAAATTCTAAAGA+AGG | - | chr5_4:22909895-22909914 | Msa0844460:intron | 20.0% |
| !!! | TGTATCAAAATTCTAAAGAA+GGG | - | chr5_4:22909896-22909915 | Msa0844460:intron | 20.0% |
| !!! | TTTTTGCTTATAAATAGGAA+GGG | + | chr5_4:22910122-22910141 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTTATAAATAGGA+AGG | + | chr5_4:22910121-22910140 | None:intergenic | 20.0% |
| !!! | ACTCATTTTTGCTTATAAAT+AGG | + | chr5_4:22910040-22910059 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGCAAAAAT+GGG | + | chr5_4:22910036-22910055 | None:intergenic | 20.0% |
| !! | TTCCTATTTATAAGCAAAAA+TGG | + | chr5_4:22910035-22910054 | None:intergenic | 20.0% |
| !!! | CTCTTTTTTCAATGAAAATT+GGG | + | chr5_4:22910259-22910278 | None:intergenic | 20.0% |
| !! | TACAAGTCTTAACTATATTT+AGG | - | chr5_4:22910311-22910330 | Msa0844460:intron | 20.0% |
| !! | ACAAGTCTTAACTATATTTA+GGG | - | chr5_4:22910312-22910331 | Msa0844460:intron | 20.0% |
| !! | GTCATCTTAATTATATTTAG+GGG | - | chr5_4:22910362-22910381 | Msa0844460:intron | 20.0% |
| !! | TGTAATTATGTTTACATGTT+AGG | - | chr5_4:22910846-22910865 | Msa0844460:CDS | 20.0% |
| !!! | AGGTAAACAAATTTTATGAA+TGG | - | chr5_4:22911225-22911244 | Msa0844460:CDS | 20.0% |
| !! | TTAAATATGCATTGAATTTC+AGG | - | chr5_4:22911390-22911409 | Msa0844460:CDS | 20.0% |
| !! | GATTAAAACTTCTTAAATAG+CGG | - | chr5_4:22911848-22911867 | Msa0844460:five_prime_UTR | 20.0% |
| !!! | TTAAGTACACATTGATTTAT+GGG | + | chr5_4:22911913-22911932 | None:intergenic | 20.0% |
| !!! | ATTAAGTACACATTGATTTA+TGG | + | chr5_4:22911914-22911933 | None:intergenic | 20.0% |
| !! | AAATCAATGTGTACTTAATA+AGG | - | chr5_4:22911915-22911934 | Msa0844460:intron | 20.0% |
| !!! | AGGTTTTTTTTGCACAATTT+AGG | - | chr5_4:22906976-22906995 | Msa0844460:three_prime_UTR | 25.0% |
| !!! | GGTTTTTTTTGCACAATTTA+GGG | - | chr5_4:22906977-22906996 | Msa0844460:three_prime_UTR | 25.0% |
| ! | TATTTGATGCGTAATTGAAA+AGG | - | chr5_4:22907185-22907204 | Msa0844460:intron | 25.0% |
| !!! | TTACTGTACATGTTTGTTTT+CGG | - | chr5_4:22907215-22907234 | Msa0844460:intron | 25.0% |
| ! | GTAGTATAAACTCAATTTCA+TGG | - | chr5_4:22907247-22907266 | Msa0844460:intron | 25.0% |
| ! | CTCAGTATTCAACAATAAAA+TGG | + | chr5_4:22907342-22907361 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTTAGGAGTAA+TGG | - | chr5_4:22907416-22907435 | Msa0844460:intron | 25.0% |
| ! | AAAGGTTCATATTAACATTG+TGG | - | chr5_4:22907476-22907495 | Msa0844460:intron | 25.0% |
| ! | CATATTAACATTGTGGTTAT+TGG | - | chr5_4:22907483-22907502 | Msa0844460:intron | 25.0% |
| ! | TTCATTAAGAACATGATTAC+TGG | - | chr5_4:22907756-22907775 | Msa0844460:intron | 25.0% |
| ! | TCATTAAGAACATGATTACT+GGG | - | chr5_4:22907757-22907776 | Msa0844460:intron | 25.0% |
| ! | TTATTATCTATCTTGACAGA+TGG | - | chr5_4:22907995-22908014 | Msa0844460:intron | 25.0% |
| ! | TACCAAATATGTTTAGTAGA+GGG | + | chr5_4:22908164-22908183 | None:intergenic | 25.0% |
| ! | ACTAAACATATTTGGTACAA+AGG | - | chr5_4:22908167-22908186 | Msa0844460:intron | 25.0% |
| !! | TTCTGAAAAAGTAATTGAGA+AGG | - | chr5_4:22908661-22908680 | Msa0844460:intron | 25.0% |
| ! | GGCATTTGTAAAAAAGATAA+CGG | + | chr5_4:22909148-22909167 | None:intergenic | 25.0% |
| !! | AATCTTTTCCTACACATTAA+AGG | - | chr5_4:22909187-22909206 | Msa0844460:intron | 25.0% |
| ! | TATGTATTCCTTTAATGTGT+AGG | + | chr5_4:22909198-22909217 | None:intergenic | 25.0% |
| ! | CATGTTTCTTATCCAATTAT+TGG | - | chr5_4:22909275-22909294 | Msa0844460:intron | 25.0% |
| ! | AATTAATGCCAGTATATTCA+AGG | - | chr5_4:22909321-22909340 | Msa0844460:intron | 25.0% |
| ! | ATTAATGCCAGTATATTCAA+GGG | - | chr5_4:22909322-22909341 | Msa0844460:intron | 25.0% |
| ! | TAGTATCTTCTCAATTCTAA+TGG | - | chr5_4:22909390-22909409 | Msa0844460:intron | 25.0% |
| ! | AGTATCTTCTCAATTCTAAT+GGG | - | chr5_4:22909391-22909410 | Msa0844460:intron | 25.0% |
| ! | GATACAGTTAATAGTATAAG+AGG | + | chr5_4:22909451-22909470 | None:intergenic | 25.0% |
| !!! | ATCTTTAGAGACACATTTTT+TGG | - | chr5_4:22909614-22909633 | Msa0844460:intron | 25.0% |
| !!! | TACTACATAATCAGTTTTAG+AGG | + | chr5_4:22909800-22909819 | None:intergenic | 25.0% |
| ! | ATATAGCAGATAGAATATTG+AGG | + | chr5_4:22909848-22909867 | None:intergenic | 25.0% |
| !!! | ACCCATTTTTGCTTATAAAT+AGG | - | chr5_4:22910117-22910136 | Msa0844460:intron | 25.0% |
| ! | TTGCTTATAAATAGGAATGA+AGG | - | chr5_4:22910125-22910144 | Msa0844460:intron | 25.0% |
| ! | TGCTTATAAATAGGAATGAA+GGG | - | chr5_4:22910126-22910145 | Msa0844460:intron | 25.0% |
| !!! | ATGTTTTTTGGACACATATT+AGG | - | chr5_4:22910212-22910231 | Msa0844460:intron | 25.0% |
| !!! | CCTCTTTTTTCAATGAAAAT+TGG | + | chr5_4:22910260-22910279 | None:intergenic | 25.0% |
| !! | CCAATTTTCATTGAAAAAAG+AGG | - | chr5_4:22910257-22910276 | Msa0844460:intron | 25.0% |
| ! | ATTTATGACGTTGTTTATAG+TGG | + | chr5_4:22910292-22910311 | None:intergenic | 25.0% |
| ! | CAAGTCTTAACTATATTTAG+GGG | - | chr5_4:22910313-22910332 | Msa0844460:intron | 25.0% |
| ! | ATTATATTTAGGGGTTTAGT+TGG | - | chr5_4:22910371-22910390 | Msa0844460:intron | 25.0% |
| !!! | TTTTGTTTCAAAACAATGAG+TGG | + | chr5_4:22910431-22910450 | None:intergenic | 25.0% |
| ! | TGTTTAAACTACCAAAGATT+TGG | - | chr5_4:22910457-22910476 | Msa0844460:CDS | 25.0% |
| ! | AAGTGAATTAGAAACTACAA+AGG | + | chr5_4:22910529-22910548 | None:intergenic | 25.0% |
| ! | TTATGTTGAAGAACATCTAT+CGG | + | chr5_4:22910625-22910644 | None:intergenic | 25.0% |
| !!! | TTCTTGTTGATTTGTTATGA+AGG | - | chr5_4:22910779-22910798 | Msa0844460:CDS | 25.0% |
| !!! | TTGATTTGTTATGAAGGTTT+TGG | - | chr5_4:22910785-22910804 | Msa0844460:CDS | 25.0% |
| ! | TGAAAAACTTAAATGCAACA+AGG | + | chr5_4:22911001-22911020 | None:intergenic | 25.0% |
| ! | AACTCGTTATTATAATGAAG+AGG | + | chr5_4:22911041-22911060 | None:intergenic | 25.0% |
| ! | TCACATTCAAGTGATAAAAA+AGG | + | chr5_4:22911064-22911083 | None:intergenic | 25.0% |
| ! | TTAAAAATAATCTGACTACC+AGG | + | chr5_4:22911093-22911112 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTTGAAAGCAGT+AGG | - | chr5_4:22911125-22911144 | Msa0844460:CDS | 25.0% |
| !! | ATTCATGCTTCATTATTTTC+AGG | - | chr5_4:22911148-22911167 | Msa0844460:CDS | 25.0% |
| ! | AATGCAAATTTGTATCTACT+GGG | - | chr5_4:22911174-22911193 | Msa0844460:CDS | 25.0% |
| ! | TTACCTCCAAATTATTCAAA+CGG | + | chr5_4:22911211-22911230 | None:intergenic | 25.0% |
| ! | ACAAAGAACAATGATGTATT+TGG | - | chr5_4:22911421-22911440 | Msa0844460:CDS | 25.0% |
| !!! | ATGCTGCTTTAATAAGAATT+TGG | + | chr5_4:22911951-22911970 | None:intergenic | 25.0% |
| !!! | GATGAGAAGGAATTATTTTA+AGG | + | chr5_4:22912070-22912089 | None:intergenic | 25.0% |
| ! | CACATTTATATTCATCATGT+TGG | + | chr5_4:22912295-22912314 | None:intergenic | 25.0% |
| !! | CAATTTTCGCTAATAAACAA+AGG | + | chr5_4:22912362-22912381 | None:intergenic | 25.0% |
| ! | TAGTATTGCAAAAAGAATCT+TGG | + | chr5_4:22912402-22912421 | None:intergenic | 25.0% |
| TGCAAAAAAAACCTACGAAT+CGG | + | chr5_4:22906970-22906989 | None:intergenic | 30.0% | |
| ! | GATCATTAGATGATAATGTG+TGG | - | chr5_4:22907019-22907038 | Msa0844460:three_prime_UTR | 30.0% |
| !!! | CTTTGTTTTCTGTGTTGAAT+TGG | - | chr5_4:22907379-22907398 | Msa0844460:intron | 30.0% |
| ! | ACTTTCATCCTTTTTGATGA+AGG | - | chr5_4:22908070-22908089 | Msa0844460:CDS | 30.0% |
| GTACCAAATATGTTTAGTAG+AGG | + | chr5_4:22908165-22908184 | None:intergenic | 30.0% | |
| TACATCTCAAGTTATCATCA+CGG | - | chr5_4:22908535-22908554 | Msa0844460:intron | 30.0% | |
| TCACCTTTCTTCAAGAATTT+GGG | + | chr5_4:22908689-22908708 | None:intergenic | 30.0% | |
| ATCACCTTTCTTCAAGAATT+TGG | + | chr5_4:22908690-22908709 | None:intergenic | 30.0% | |
| AAATTCTTGAAGAAAGGTGA+TGG | - | chr5_4:22908689-22908708 | Msa0844460:intron | 30.0% | |
| ! | TTTTCTGAATATCCTTCACT+TGG | - | chr5_4:22908758-22908777 | Msa0844460:intron | 30.0% |
| GCATATCTCTGACAATAAAA+CGG | + | chr5_4:22908784-22908803 | None:intergenic | 30.0% | |
| AACAATTATCCTAGTGAAAG+TGG | - | chr5_4:22908842-22908861 | Msa0844460:intron | 30.0% | |
| CTCTGATCATTAGTTATTCT+TGG | - | chr5_4:22909080-22909099 | Msa0844460:intron | 30.0% | |
| AAGATTTACATTTGCCAAGT+AGG | - | chr5_4:22909105-22909124 | Msa0844460:intron | 30.0% | |
| GAAGTATGAAGTCCAATAAT+TGG | + | chr5_4:22909290-22909309 | None:intergenic | 30.0% | |
| TGAAAATCCCTTGAATATAC+TGG | + | chr5_4:22909332-22909351 | None:intergenic | 30.0% | |
| ! | TACTTGTATTAATTTGGGCT+AGG | - | chr5_4:22909532-22909551 | Msa0844460:CDS | 30.0% |
| CTGGTTATAAACTAAACATG+CGG | + | chr5_4:22909935-22909954 | None:intergenic | 30.0% | |
| GCTTATAAATAGGAATGAAG+GGG | - | chr5_4:22910127-22910146 | Msa0844460:intron | 30.0% | |
| CTTATAAATAGGAATGAAGG+GGG | - | chr5_4:22910128-22910147 | Msa0844460:intron | 30.0% | |
| ! | TACCAAAGATTTGGAATGAA+TGG | - | chr5_4:22910466-22910485 | Msa0844460:CDS | 30.0% |
| !!! | GAGTACTTTTAAAATCTTCC+TGG | - | chr5_4:22910488-22910507 | Msa0844460:CDS | 30.0% |
| ! | ATCACAAGAAAGAACCTTTT+CGG | + | chr5_4:22910561-22910580 | None:intergenic | 30.0% |
| !! | ATTTTCAAGAGCAGATTAAG+TGG | + | chr5_4:22910698-22910717 | None:intergenic | 30.0% |
| ! | TCTGCTCTTGAAAATCTTTT+CGG | - | chr5_4:22910703-22910722 | Msa0844460:CDS | 30.0% |
| ! | ATGACATGAAATTTGAGACT+CGG | + | chr5_4:22910813-22910832 | None:intergenic | 30.0% |
| CAATGCAAATTTGTATCTAC+TGG | - | chr5_4:22911173-22911192 | Msa0844460:CDS | 30.0% | |
| ATGCAAATTTGTATCTACTG+GGG | - | chr5_4:22911175-22911194 | Msa0844460:CDS | 30.0% | |
| ATACACCCGTTTGAATAATT+TGG | - | chr5_4:22911202-22911221 | Msa0844460:CDS | 30.0% | |
| TACCTCCAAATTATTCAAAC+GGG | + | chr5_4:22911210-22911229 | None:intergenic | 30.0% | |
| GTGCATATAATATCCATCAA+CGG | - | chr5_4:22911278-22911297 | Msa0844460:intron | 30.0% | |
| ACTTAAAGTAGAGCTTGATA+AGG | - | chr5_4:22911447-22911466 | Msa0844460:CDS | 30.0% | |
| !! | ATCTACCTTTTTCATCATTG+CGG | - | chr5_4:22911526-22911545 | Msa0844460:CDS | 30.0% |
| TTTAACCGCAATGATGAAAA+AGG | + | chr5_4:22911534-22911553 | None:intergenic | 30.0% | |
| ! | AAAATCAATGATGGAACTCA+AGG | - | chr5_4:22911564-22911583 | Msa0844460:CDS | 30.0% |
| TAAATGGTCAAGAACAAAAC+CGG | + | chr5_4:22911672-22911691 | None:intergenic | 30.0% | |
| !! | CTACCATTTTTCTCTTCGTT+CGG | - | chr5_4:22906864-22906883 | Msa0844460:three_prime_UTR | 35.0% |
| TAACCGAACGAAGAGAAAAA+TGG | + | chr5_4:22906870-22906889 | None:intergenic | 35.0% | |
| ! | ATTTTTCTCTTCGTTCGGTT+AGG | - | chr5_4:22906869-22906888 | Msa0844460:three_prime_UTR | 35.0% |
| ! | TTTTTCTCTTCGTTCGGTTA+GGG | - | chr5_4:22906870-22906889 | Msa0844460:three_prime_UTR | 35.0% |
| ACATCAGCTAGAAACGAAAT+CGG | + | chr5_4:22906928-22906947 | None:intergenic | 35.0% | |
| !! | AGGAGTAATGGATAAAGAAG+AGG | - | chr5_4:22907428-22907447 | Msa0844460:intron | 35.0% |
| TTATTGGTCATGTCAACTCT+GGG | - | chr5_4:22907499-22907518 | Msa0844460:intron | 35.0% | |
| AGGCATTTCAAAGATGGAAA+TGG | - | chr5_4:22907560-22907579 | Msa0844460:intron | 35.0% | |
| TAAAGCTGCTGAGTTAAACA+AGG | - | chr5_4:22907596-22907615 | Msa0844460:intron | 35.0% | |
| CTGACCATTATTGGAAATAC+CGG | + | chr5_4:22907841-22907860 | None:intergenic | 35.0% | |
| ! | TCATCCTTTTTGATGAAGGT+TGG | - | chr5_4:22908074-22908093 | Msa0844460:CDS | 35.0% |
| ATAGCCAACCTTCATCAAAA+AGG | + | chr5_4:22908081-22908100 | None:intergenic | 35.0% | |
| AGCCCTCTACTAAACATATT+TGG | - | chr5_4:22908159-22908178 | Msa0844460:intron | 35.0% | |
| AACTTGAGATGTAAAGTGAG+TGG | + | chr5_4:22908528-22908547 | None:intergenic | 35.0% | |
| ACATCTCAAGTTATCATCAC+GGG | - | chr5_4:22908536-22908555 | Msa0844460:intron | 35.0% | |
| ! | TTCAGAAATTTTGTCCACCT+TGG | + | chr5_4:22908648-22908667 | None:intergenic | 35.0% |
| GTTATCTTACCACTTTCACT+AGG | + | chr5_4:22908854-22908873 | None:intergenic | 35.0% | |
| ACAAAATGCACACAAAATCC+AGG | + | chr5_4:22909042-22909061 | None:intergenic | 35.0% | |
| TAAATTTGAGGGTTCCTACT+TGG | + | chr5_4:22909122-22909141 | None:intergenic | 35.0% | |
| ! | GATAACGGCTGTAAATTTGA+GGG | + | chr5_4:22909133-22909152 | None:intergenic | 35.0% |
| ! | AGATAACGGCTGTAAATTTG+AGG | + | chr5_4:22909134-22909153 | None:intergenic | 35.0% |
| ! | AGTAACATGAAGGGTATGAT+TGG | + | chr5_4:22909244-22909263 | None:intergenic | 35.0% |
| AGTACAGCTAGTAACATGAA+GGG | + | chr5_4:22909253-22909272 | None:intergenic | 35.0% | |
| AAGTACAGCTAGTAACATGA+AGG | + | chr5_4:22909254-22909273 | None:intergenic | 35.0% | |
| TCCAAGTGATCATCTAAACA+TGG | - | chr5_4:22909484-22909503 | Msa0844460:intron | 35.0% | |
| ACCATGTTTAGATGATCACT+TGG | + | chr5_4:22909488-22909507 | None:intergenic | 35.0% | |
| ! | TGTATTAATTTGGGCTAGGA+TGG | - | chr5_4:22909536-22909555 | Msa0844460:CDS | 35.0% |
| ! | CAGTAAGAGCACAAAAAGAA+AGG | + | chr5_4:22909696-22909715 | None:intergenic | 35.0% |
| TATAAACTAAACATGCGGAC+AGG | + | chr5_4:22909930-22909949 | None:intergenic | 35.0% | |
| !! | CAGATCATTTCACTTTTGCA+CGG | + | chr5_4:22910007-22910026 | None:intergenic | 35.0% |
| TGCTTATAAATAGGAAGGGA+GGG | + | chr5_4:22910031-22910050 | None:intergenic | 35.0% | |
| TTGCTTATAAATAGGAAGGG+AGG | + | chr5_4:22910032-22910051 | None:intergenic | 35.0% | |
| !! | TCGAAGAAAGTTGATGCATT+TGG | - | chr5_4:22910059-22910078 | Msa0844460:intron | 35.0% |
| !! | AGTTTGATTTTCCCATCCTA+AGG | - | chr5_4:22910157-22910176 | Msa0844460:intron | 35.0% |
| AAACCGCCAACAATATTGAA+TGG | + | chr5_4:22910191-22910210 | None:intergenic | 35.0% | |
| !!! | GTTGGCGGTTTAATGTTTTT+TGG | - | chr5_4:22910200-22910219 | Msa0844460:intron | 35.0% |
| CTCCATTCATTCCAAATCTT+TGG | + | chr5_4:22910471-22910490 | None:intergenic | 35.0% | |
| ! | AAAGAACCTTTTCGGTGATT+AGG | + | chr5_4:22910553-22910572 | None:intergenic | 35.0% |
| TCTTTCTTGTGATACCTGTT+TGG | - | chr5_4:22910568-22910587 | Msa0844460:CDS | 35.0% | |
| GTCAAAAAAATTCACCAGTG+GGG | + | chr5_4:22910603-22910622 | None:intergenic | 35.0% | |
| GGTCAAAAAAATTCACCAGT+GGG | + | chr5_4:22910604-22910623 | None:intergenic | 35.0% | |
| TAGGCGTCATATTTGCATAT+AGG | - | chr5_4:22910672-22910691 | Msa0844460:CDS | 35.0% | |
| ! | CTGCTCTTGAAAATCTTTTC+GGG | - | chr5_4:22910704-22910723 | Msa0844460:CDS | 35.0% |
| TCAACAAGAATTTCCCAAAG+AGG | + | chr5_4:22910769-22910788 | None:intergenic | 35.0% | |
| TAAGTGACAGACATTCTTGA+AGG | + | chr5_4:22910884-22910903 | None:intergenic | 35.0% | |
| !!! | GATTTTTGAGTTTCTGCTGA+CGG | - | chr5_4:22910930-22910949 | Msa0844460:CDS | 35.0% |
| TGCAAATTTGTATCTACTGG+GGG | - | chr5_4:22911176-22911195 | Msa0844460:CDS | 35.0% | |
| ! | ATGTGATTTGAAACGTAGTG+TGG | - | chr5_4:22911316-22911335 | Msa0844460:intron | 35.0% |
| ! | TGTGATTTGAAACGTAGTGT+GGG | - | chr5_4:22911317-22911336 | Msa0844460:intron | 35.0% |
| TCATTGCGGTTAAAATCAGA+TGG | - | chr5_4:22911540-22911559 | Msa0844460:CDS | 35.0% | |
| TCAGATGGCAAAATCAATGA+TGG | - | chr5_4:22911555-22911574 | Msa0844460:CDS | 35.0% | |
| ! | AGGTACATAGCTTGTATTTC+CGG | - | chr5_4:22911650-22911669 | Msa0844460:CDS | 35.0% |
| GTACTTAATAAGGTCTCTCA+TGG | - | chr5_4:22911925-22911944 | Msa0844460:intron | 35.0% | |
| ATCATGCTCCTCTCTAAATA+TGG | - | chr5_4:22912087-22912106 | Msa0844460:intron | 35.0% | |
| TCATGCTCCTCTCTAAATAT+GGG | - | chr5_4:22912088-22912107 | Msa0844460:intron | 35.0% | |
| TTGTTGACCCATATTTAGAG+AGG | + | chr5_4:22912098-22912117 | None:intergenic | 35.0% | |
| AATACCTCCATGTTTGTATC+AGG | - | chr5_4:22912324-22912343 | Msa0844460:intron | 35.0% | |
| ATCGGAGAAGTTTACCTTGA+AGG | + | chr5_4:22906910-22906929 | None:intergenic | 40.0% | |
| GTTATTGGTCATGTCAACTC+TGG | - | chr5_4:22907498-22907517 | Msa0844460:intron | 40.0% | |
| GGTCATTTGTTCTACAAGCT+TGG | - | chr5_4:22907537-22907556 | Msa0844460:intron | 40.0% | |
| CATTTGTTCTACAAGCTTGG+AGG | - | chr5_4:22907540-22907559 | Msa0844460:intron | 40.0% | |
| AGGATTCATTCAAGTATGCG+TGG | - | chr5_4:22907616-22907635 | Msa0844460:intron | 40.0% | |
| GGATTCATTCAAGTATGCGT+GGG | - | chr5_4:22907617-22907636 | Msa0844460:intron | 40.0% | |
| TTAATGAAATCCCTGTGTCC+GGG | + | chr5_4:22907744-22907763 | None:intergenic | 40.0% | |
| CTTAATGAAATCCCTGTGTC+CGG | + | chr5_4:22907745-22907764 | None:intergenic | 40.0% | |
| ! | AAGAAGAGCACAATCAGCTT+GGG | + | chr5_4:22907787-22907806 | None:intergenic | 40.0% |
| ! | TAAGAAGAGCACAATCAGCT+TGG | + | chr5_4:22907788-22907807 | None:intergenic | 40.0% |
| TTCACGGATCTGACCATTAT+TGG | + | chr5_4:22907850-22907869 | None:intergenic | 40.0% | |
| TACCTACGCTTGAAGGAAAA+GGG | + | chr5_4:22908032-22908051 | None:intergenic | 40.0% | |
| ATACCTACGCTTGAAGGAAA+AGG | + | chr5_4:22908033-22908052 | None:intergenic | 40.0% | |
| TTCTTCATACCTACGCTTGA+AGG | + | chr5_4:22908039-22908058 | None:intergenic | 40.0% | |
| GGAACAAATTGAAGTTCGTC+TGG | + | chr5_4:22908107-22908126 | None:intergenic | 40.0% | |
| ! | CTTCAATTTGTTCCCATCTC+TGG | - | chr5_4:22908113-22908132 | Msa0844460:intron | 40.0% |
| !!! | TGTTCCCATCTCTGGTTTTA+AGG | - | chr5_4:22908121-22908140 | Msa0844460:intron | 40.0% |
| !!! | GTTCCCATCTCTGGTTTTAA+GGG | - | chr5_4:22908122-22908141 | Msa0844460:intron | 40.0% |
| TCTCCCTTAAAACCAGAGAT+GGG | + | chr5_4:22908128-22908147 | None:intergenic | 40.0% | |
| ATCTCCCTTAAAACCAGAGA+TGG | + | chr5_4:22908129-22908148 | None:intergenic | 40.0% | |
| TTAAGAGCTTCAAGAAGGGT+GGG | + | chr5_4:22908194-22908213 | None:intergenic | 40.0% | |
| TCGGTTAAGAGCTTCAAGAA+GGG | + | chr5_4:22908198-22908217 | None:intergenic | 40.0% | |
| TTCGGTTAAGAGCTTCAAGA+AGG | + | chr5_4:22908199-22908218 | None:intergenic | 40.0% | |
| GTCTACAAGATTGGAGGAAT+TGG | - | chr5_4:22908272-22908291 | Msa0844460:intron | 40.0% | |
| GAAAATCCCACATTATCACC+AGG | + | chr5_4:22908428-22908447 | None:intergenic | 40.0% | |
| GAGCCCAAATTCTTGAAGAA+AGG | - | chr5_4:22908683-22908702 | Msa0844460:intron | 40.0% | |
| ! | TTCTTGAAGAAAGGTGATGG+TGG | - | chr5_4:22908692-22908711 | Msa0844460:intron | 40.0% |
| GAAAAACTCTCAACCACCAT+GGG | + | chr5_4:22908743-22908762 | None:intergenic | 40.0% | |
| AGAAAAACTCTCAACCACCA+TGG | + | chr5_4:22908744-22908763 | None:intergenic | 40.0% | |
| ACAATAAAACGGCCAAGTGA+AGG | + | chr5_4:22908773-22908792 | None:intergenic | 40.0% | |
| AACAGTTCGCTCTTTCAATG+TGG | + | chr5_4:22908882-22908901 | None:intergenic | 40.0% | |
| !! | GAAAGAGCGAACTGTTTTTC+AGG | - | chr5_4:22908886-22908905 | Msa0844460:intron | 40.0% |
| TTTCTTATTCCTTCCCGATC+TGG | - | chr5_4:22908945-22908964 | Msa0844460:intron | 40.0% | |
| TTCTTATTCCTTCCCGATCT+GGG | - | chr5_4:22908946-22908965 | Msa0844460:intron | 40.0% | |
| GGCAATACATGTAGAAGCAA+TGG | + | chr5_4:22909430-22909449 | None:intergenic | 40.0% | |
| !!! | TGTTAGTTTTGCACTAGAGC+TGG | + | chr5_4:22909954-22909973 | None:intergenic | 40.0% |
| CACATAAGCGCATTAGCTAA+AGG | - | chr5_4:22909981-22910000 | Msa0844460:intron | 40.0% | |
| CCAACAATATTGAATGGAGG+AGG | + | chr5_4:22910185-22910204 | None:intergenic | 40.0% | |
| CCTCCTCCATTCAATATTGT+TGG | - | chr5_4:22910182-22910201 | Msa0844460:intron | 40.0% | |
| CCTCCATTCAATATTGTTGG+CGG | - | chr5_4:22910185-22910204 | Msa0844460:intron | 40.0% | |
| GGGGTATAGTTCGAAAACAA+AGG | - | chr5_4:22910332-22910351 | Msa0844460:intron | 40.0% | |
| GGGGTTTAGTTGGAAATCAA+AGG | - | chr5_4:22910381-22910400 | Msa0844460:intron | 40.0% | |
| CACTTTCCTAATCACCGAAA+AGG | - | chr5_4:22910544-22910563 | Msa0844460:CDS | 40.0% | |
| AAAATTCACCAGTGGGGATT+GGG | + | chr5_4:22910597-22910616 | None:intergenic | 40.0% | |
| AAAAATTCACCAGTGGGGAT+TGG | + | chr5_4:22910598-22910617 | None:intergenic | 40.0% | |
| CGGTCAAAAAAATTCACCAG+TGG | + | chr5_4:22910605-22910624 | None:intergenic | 40.0% | |
| ! | CGGGATTCTTTCTAGTCATT+TGG | - | chr5_4:22910723-22910742 | Msa0844460:CDS | 40.0% |
| CAAGAATTTCCCAAAGAGGA+GGG | + | chr5_4:22910765-22910784 | None:intergenic | 40.0% | |
| ACAAGAATTTCCCAAAGAGG+AGG | + | chr5_4:22910766-22910785 | None:intergenic | 40.0% | |
| ! | CACTACTGTACTTCTTTTCC+TGG | - | chr5_4:22910908-22910927 | Msa0844460:CDS | 40.0% |
| CAGCAGAAACTCAAAAATCC+AGG | + | chr5_4:22910929-22910948 | None:intergenic | 40.0% | |
| ACTTGAATGTGACTTCTACC+TGG | - | chr5_4:22911072-22911091 | Msa0844460:CDS | 40.0% | |
| GCAAATTTGTATCTACTGGG+GGG | - | chr5_4:22911177-22911196 | Msa0844460:CDS | 40.0% | |
| CACCCGTTTGAATAATTTGG+AGG | - | chr5_4:22911205-22911224 | Msa0844460:CDS | 40.0% | |
| ! | ATCAATGATGGAACTCAAGG+AGG | - | chr5_4:22911567-22911586 | Msa0844460:CDS | 40.0% |
| ATCCTTGAAGAGAGAATCAG+AGG | - | chr5_4:22911597-22911616 | Msa0844460:CDS | 40.0% | |
| TTCCTCTGATTCTCTCTTCA+AGG | + | chr5_4:22911602-22911621 | None:intergenic | 40.0% | |
| TGCGCATATGAAGTTAGTTG+AGG | - | chr5_4:22911630-22911649 | Msa0844460:CDS | 40.0% | |
| GCATTCTCTACCACAGAATT+CGG | - | chr5_4:22911967-22911986 | Msa0844460:intron | 40.0% | |
| ATAATGGTGACCGAATTCTG+TGG | + | chr5_4:22911980-22911999 | None:intergenic | 40.0% | |
| ATAGTTATACCGGTCACTTC+TGG | - | chr5_4:22912212-22912231 | Msa0844460:intron | 40.0% | |
| TATGCCTGATACAAACATGG+AGG | + | chr5_4:22912331-22912350 | None:intergenic | 40.0% | |
| CACTATGCCTGATACAAACA+TGG | + | chr5_4:22912334-22912353 | None:intergenic | 40.0% | |
| CATGTTTGTATCAGGCATAG+TGG | - | chr5_4:22912332-22912351 | Msa0844460:intron | 40.0% | |
| !! | CATCGATATCACCGATTCGT+AGG | - | chr5_4:22906956-22906975 | Msa0844460:three_prime_UTR | 45.0% |
| GGGTACGTATGCGATTACAT+AGG | - | chr5_4:22906997-22907016 | Msa0844460:three_prime_UTR | 45.0% | |
| GTAGAACAAATGACCAGCAG+TGG | + | chr5_4:22907532-22907551 | None:intergenic | 45.0% | |
| !! | GCTTGGAGGCATTTCAAAGA+TGG | - | chr5_4:22907554-22907573 | Msa0844460:intron | 45.0% |
| GTGGGTTCTTGACAAACTCA+AGG | - | chr5_4:22907635-22907654 | Msa0844460:CDS | 45.0% | |
| TAATGAAATCCCTGTGTCCG+GGG | + | chr5_4:22907743-22907762 | None:intergenic | 45.0% | |
| !! | ATCGTTGATTCCACTCATGC+TGG | - | chr5_4:22907807-22907826 | Msa0844460:intron | 45.0% |
| !!! | GATTCCACTCATGCTGGTTT+TGG | - | chr5_4:22907813-22907832 | Msa0844460:CDS | 45.0% |
| GGAGCCGGTATTTCCAATAA+TGG | - | chr5_4:22907834-22907853 | Msa0844460:CDS | 45.0% | |
| ! | AAGCAAGGAGAGCATGTTCA+CGG | + | chr5_4:22907866-22907885 | None:intergenic | 45.0% |
| TGACACCAAGAGAGTAAGCA+AGG | + | chr5_4:22907881-22907900 | None:intergenic | 45.0% | |
| AATGATCTGCTGCTGCAACA+AGG | - | chr5_4:22907905-22907924 | Msa0844460:intron | 45.0% | |
| TCTTGACAGATGGATGCCTT+TGG | - | chr5_4:22908005-22908024 | Msa0844460:intron | 45.0% | |
| ACCTACGCTTGAAGGAAAAG+GGG | + | chr5_4:22908031-22908050 | None:intergenic | 45.0% | |
| GTTAAGAGCTTCAAGAAGGG+TGG | + | chr5_4:22908195-22908214 | None:intergenic | 45.0% | |
| ACCGAATCAAAGAGCCTAAG+AGG | - | chr5_4:22908213-22908232 | Msa0844460:intron | 45.0% | |
| GCCTCTTAGGCTCTTTGATT+CGG | + | chr5_4:22908217-22908236 | None:intergenic | 45.0% | |
| AGACACCCTGAAGTGGTAAT+CGG | + | chr5_4:22908256-22908275 | None:intergenic | 45.0% | |
| ATCTTGTAGACACCCTGAAG+TGG | + | chr5_4:22908263-22908282 | None:intergenic | 45.0% | |
| ! | CTTCAGGGTGTCTACAAGAT+TGG | - | chr5_4:22908263-22908282 | Msa0844460:intron | 45.0% |
| GATTGGAGGAATTGGAACTG+TGG | - | chr5_4:22908280-22908299 | Msa0844460:intron | 45.0% | |
| TGGTGTCTTGAAACCTGGAA+TGG | - | chr5_4:22908322-22908341 | Msa0844460:intron | 45.0% | |
| GCAAAAGTCAACACCATTCC+AGG | + | chr5_4:22908338-22908357 | None:intergenic | 45.0% | |
| TGAAGTGACGTCTTTGCAGA+TGG | - | chr5_4:22908376-22908395 | Msa0844460:intron | 45.0% | |
| TCCCACATTATCACCAGGAA+GGG | + | chr5_4:22908423-22908442 | None:intergenic | 45.0% | |
| ATCCCACATTATCACCAGGA+AGG | + | chr5_4:22908424-22908443 | None:intergenic | 45.0% | |
| ! | AGTTTGAGGCAACATAGCCT+CGG | + | chr5_4:22908481-22908500 | None:intergenic | 45.0% |
| AGCAAACCTGACAGCAATGT+GGG | + | chr5_4:22908615-22908634 | None:intergenic | 45.0% | |
| TAGCAAACCTGACAGCAATG+TGG | + | chr5_4:22908616-22908635 | None:intergenic | 45.0% | |
| ! | GTTTGCTAAGCTTCTTGCCA+AGG | - | chr5_4:22908628-22908647 | Msa0844460:intron | 45.0% |
| AGTCTCTAGTTGTGAACACC+TGG | - | chr5_4:22909021-22909040 | Msa0844460:intron | 45.0% | |
| ATAAGCTTGAGTCACTTCGC+AGG | - | chr5_4:22909722-22909741 | Msa0844460:intron | 45.0% | |
| TAAGCTTGAGTCACTTCGCA+GGG | - | chr5_4:22909723-22909742 | Msa0844460:intron | 45.0% | |
| GTGTCGGAATAAAGAGCTGA+TGG | - | chr5_4:22909753-22909772 | Msa0844460:intron | 45.0% | |
| ! | TGCACTGATACACCTTGATG+AGG | - | chr5_4:22909867-22909886 | Msa0844460:intron | 45.0% |
| !! | GATACAAAGGTGCCTCATCA+AGG | + | chr5_4:22909882-22909901 | None:intergenic | 45.0% |
| ACTAAACATGCGGACAGGAT+AGG | + | chr5_4:22909925-22909944 | None:intergenic | 45.0% | |
| CCGCCAACAATATTGAATGG+AGG | + | chr5_4:22910188-22910207 | None:intergenic | 45.0% | |
| GTGACAGACATTCTTGAAGG+TGG | + | chr5_4:22910881-22910900 | None:intergenic | 45.0% | |
| TTCTGCTGACGGTTGTTACA+TGG | - | chr5_4:22910941-22910960 | Msa0844460:CDS | 45.0% | |
| ! | AGAAGTGCATGAACCGTTGA+TGG | + | chr5_4:22911294-22911313 | None:intergenic | 45.0% |
| ! | TAGAGAGGAGCATGATGAGA+AGG | + | chr5_4:22912083-22912102 | None:intergenic | 45.0% |
| CACTTTCTCTTCAAGCTGTC+AGG | + | chr5_4:22912150-22912169 | None:intergenic | 45.0% | |
| !! | TTAATTCTTAAAAAATATAT+AGG | + | chr5_4:22909169-22909188 | None:intergenic | 5.0% |
| TTTCAACGCAGCGTCCTTCA+AGG | - | chr5_4:22906893-22906912 | Msa0844460:three_prime_UTR | 50.0% | |
| ! | GATGATAGTGCAGCGGTACT+TGG | + | chr5_4:22907715-22907734 | None:intergenic | 50.0% |
| AATGAAATCCCTGTGTCCGG+GGG | + | chr5_4:22907742-22907761 | None:intergenic | 50.0% | |
| !!! | ACTCATGCTGGTTTTGGAGC+CGG | - | chr5_4:22907819-22907838 | Msa0844460:CDS | 50.0% |
| GCTCTCCTTGCTTACTCTCT+TGG | - | chr5_4:22907873-22907892 | Msa0844460:intron | 50.0% | |
| CTTGAAGGAAAAGGGGCCAA+AGG | + | chr5_4:22908024-22908043 | None:intergenic | 50.0% | |
| GGCTTGTCTGATAGCCTCTT+AGG | + | chr5_4:22908230-22908249 | None:intergenic | 50.0% | |
| CCTCTCCGATTACCACTTCA+GGG | - | chr5_4:22908248-22908267 | Msa0844460:intron | 50.0% | |
| ! | CAGGGTGTCTACAAGATTGG+AGG | - | chr5_4:22908266-22908285 | Msa0844460:intron | 50.0% |
| GGAATTGGAACTGTGGCTGT+AGG | - | chr5_4:22908287-22908306 | Msa0844460:intron | 50.0% | |
| CTGTGGCTGTAGGATGTGTT+AGG | - | chr5_4:22908297-22908316 | Msa0844460:intron | 50.0% | |
| GCTGTAGGATGTGTTAGGAC+TGG | - | chr5_4:22908302-22908321 | Msa0844460:intron | 50.0% | |
| ! | AGGACTGGTGTCTTGAAACC+TGG | - | chr5_4:22908317-22908336 | Msa0844460:intron | 50.0% |
| !!! | GTGTTGACTTTTGCCCCAAC+TGG | - | chr5_4:22908344-22908363 | Msa0844460:intron | 50.0% |
| AAGACGTCACTTCACCTTGC+AGG | + | chr5_4:22908370-22908389 | None:intergenic | 50.0% | |
| ATTATCACCAGGAAGGGCCT+CGG | + | chr5_4:22908417-22908436 | None:intergenic | 50.0% | |
| ! | GCCCTTCCTGGTGATAATGT+GGG | - | chr5_4:22908419-22908438 | Msa0844460:intron | 50.0% |
| TGGGTGATGCTTGGAGTTTG+AGG | + | chr5_4:22908495-22908514 | None:intergenic | 50.0% | |
| TGTAAAGTGAGTGGCCTCCT+TGG | + | chr5_4:22908519-22908538 | None:intergenic | 50.0% | |
| AGCCATTTCCAATCCGACCA+GGG | + | chr5_4:22908565-22908584 | None:intergenic | 50.0% | |
| TAGCCATTTCCAATCCGACC+AGG | + | chr5_4:22908566-22908585 | None:intergenic | 50.0% | |
| GAGGTGTGGCAGTAAAGAAC+AGG | + | chr5_4:22908593-22908612 | None:intergenic | 50.0% | |
| AAACCTGACAGCAATGTGGG+AGG | + | chr5_4:22908612-22908631 | None:intergenic | 50.0% | |
| TGCTAAGCTTCTTGCCAAGG+TGG | - | chr5_4:22908631-22908650 | Msa0844460:intron | 50.0% | |
| CAGAGATATGCGTCGAACTG+TGG | - | chr5_4:22908793-22908812 | Msa0844460:intron | 50.0% | |
| ! | ATCTAGAACCCAGATCGGGA+AGG | + | chr5_4:22908957-22908976 | None:intergenic | 50.0% |
| ! | TCGGATCTAGAACCCAGATC+GGG | + | chr5_4:22908961-22908980 | None:intergenic | 50.0% |
| ! | GTCGGATCTAGAACCCAGAT+CGG | + | chr5_4:22908962-22908981 | None:intergenic | 50.0% |
| !! | GATCTGGGTTCTAGATCCGA+CGG | - | chr5_4:22908961-22908980 | Msa0844460:intron | 50.0% |
| TTCGCAGGGAGTTACAGTGT+CGG | - | chr5_4:22909737-22909756 | Msa0844460:intron | 50.0% | |
| !! | TTGAATGGAGGAGGTGCCTT+AGG | + | chr5_4:22910176-22910195 | None:intergenic | 50.0% |
| AGGTGCGCAAATATGATGCC+AGG | + | chr5_4:22910509-22910528 | None:intergenic | 50.0% | |
| TGTCTCTGTCCCTCCTCTTT+GGG | - | chr5_4:22910753-22910772 | Msa0844460:CDS | 50.0% | |
| CGGTATAACTATTCTGCCCG+CGG | + | chr5_4:22912204-22912223 | None:intergenic | 50.0% | |
| CGCGGGCAGAATAGTTATAC+CGG | - | chr5_4:22912202-22912221 | Msa0844460:intron | 50.0% | |
| TCTGGGAAGTCAACCACTGC+TGG | - | chr5_4:22907516-22907535 | Msa0844460:intron | 55.0% | |
| !! | GGGCATCGATGATAGTGCAG+CGG | + | chr5_4:22907722-22907741 | None:intergenic | 55.0% |
| TGCACTATCATCGATGCCCC+CGG | - | chr5_4:22907723-22907742 | Msa0844460:intron | 55.0% | |
| GGCTCCAAAACCAGCATGAG+TGG | + | chr5_4:22907820-22907839 | None:intergenic | 55.0% | |
| ! | GCCCCTTTTCCTTCAAGCGT+AGG | - | chr5_4:22908027-22908046 | Msa0844460:intron | 55.0% |
| GCCTCTCCGATTACCACTTC+AGG | - | chr5_4:22908247-22908266 | Msa0844460:intron | 55.0% | |
| CCCTGAAGTGGTAATCGGAG+AGG | + | chr5_4:22908251-22908270 | None:intergenic | 55.0% | |
| TTCACCTTGCAGGCCAGTTG+GGG | + | chr5_4:22908360-22908379 | None:intergenic | 55.0% | |
| CTTCACCTTGCAGGCCAGTT+GGG | + | chr5_4:22908361-22908380 | None:intergenic | 55.0% | |
| ACTTCACCTTGCAGGCCAGT+TGG | + | chr5_4:22908362-22908381 | None:intergenic | 55.0% | |
| GGACCATGCAGATCTTTCCG+AGG | - | chr5_4:22908397-22908416 | Msa0844460:intron | 55.0% | |
| ! | GGCCCTTCCTGGTGATAATG+TGG | - | chr5_4:22908418-22908437 | Msa0844460:intron | 55.0% |
| TCTGATGCACATCTCAGCCG+AGG | - | chr5_4:22908461-22908480 | Msa0844460:intron | 55.0% | |
| GTTATCATCACGGGTCACCC+TGG | - | chr5_4:22908545-22908564 | Msa0844460:intron | 55.0% | |
| ! | CACCCTGGTCGGATTGGAAA+TGG | - | chr5_4:22908560-22908579 | Msa0844460:intron | 55.0% |
| TGACAGCAATGTGGGAGGTG+TGG | + | chr5_4:22908607-22908626 | None:intergenic | 55.0% | |
| ACACCTCCCACATTGCTGTC+AGG | - | chr5_4:22908606-22908625 | Msa0844460:intron | 55.0% | |
| GATGATTCCCACCAAGCCCA+TGG | - | chr5_4:22908724-22908743 | Msa0844460:intron | 55.0% | |
| ! | TCAACCACCATGGGCTTGGT+GGG | + | chr5_4:22908734-22908753 | None:intergenic | 55.0% |
| ACTCTCAACCACCATGGGCT+TGG | + | chr5_4:22908738-22908757 | None:intergenic | 55.0% | |
| ATGCGTCGAACTGTGGCTGT+TGG | - | chr5_4:22908800-22908819 | Msa0844460:intron | 55.0% | |
| TTCTAGATCCGACGGTGGCT+GGG | - | chr5_4:22908969-22908988 | Msa0844460:intron | 55.0% | |
| AGAAATAGCCCAGCCACCGT+CGG | + | chr5_4:22908980-22908999 | None:intergenic | 55.0% | |
| !! | TGGAGGAGGTGCCTTAGGAT+GGG | + | chr5_4:22910171-22910190 | None:intergenic | 55.0% |
| !! | ATGGAGGAGGTGCCTTAGGA+TGG | + | chr5_4:22910172-22910191 | None:intergenic | 55.0% |
| CTGTCTCTGTCCCTCCTCTT+TGG | - | chr5_4:22910752-22910771 | Msa0844460:CDS | 55.0% | |
| CTGACAGCTTGAAGAGACCG+CGG | - | chr5_4:22912184-22912203 | Msa0844460:intron | 55.0% | |
| TGACAGCTTGAAGAGACCGC+GGG | - | chr5_4:22912185-22912204 | Msa0844460:intron | 55.0% | |
| ATACCGGTCACTTCTGGCAG+AGG | - | chr5_4:22912218-22912237 | Msa0844460:intron | 55.0% | |
| CTTCCTCTGCCAGAAGTGAC+CGG | + | chr5_4:22912224-22912243 | None:intergenic | 55.0% | |
| CTGGCAGAGGAAGCAGAGTT+TGG | - | chr5_4:22912231-22912250 | Msa0844460:intron | 55.0% | |
| CTCAAGGCTGAGCGCGAAAG+AGG | - | chr5_4:22907651-22907670 | Msa0844460:CDS | 60.0% | |
| ! | TTTGCCCCAACTGGCCTGCA+AGG | - | chr5_4:22908353-22908372 | Msa0844460:intron | 60.0% |
| GGGCCTCGGAAAGATCTGCA+TGG | + | chr5_4:22908403-22908422 | None:intergenic | 60.0% | |
| GATCTTTCCGAGGCCCTTCC+TGG | - | chr5_4:22908407-22908426 | Msa0844460:intron | 60.0% | |
| CTCCAAGCATCACCCAGCCA+AGG | - | chr5_4:22908499-22908518 | Msa0844460:intron | 60.0% | |
| CTCCTTGGCTGGGTGATGCT+TGG | + | chr5_4:22908504-22908523 | None:intergenic | 60.0% | |
| CAAGCATCACCCAGCCAAGG+AGG | - | chr5_4:22908502-22908521 | Msa0844460:intron | 60.0% | |
| AGTGAGTGGCCTCCTTGGCT+GGG | + | chr5_4:22908514-22908533 | None:intergenic | 60.0% | |
| AAGTGAGTGGCCTCCTTGGC+TGG | + | chr5_4:22908515-22908534 | None:intergenic | 60.0% | |
| TCATCACGGGTCACCCTGGT+CGG | - | chr5_4:22908549-22908568 | Msa0844460:intron | 60.0% | |
| GATTCCCACCAAGCCCATGG+TGG | - | chr5_4:22908727-22908746 | Msa0844460:intron | 60.0% | |
| CTCAACCACCATGGGCTTGG+TGG | + | chr5_4:22908735-22908754 | None:intergenic | 60.0% | |
| !! | CTGGGTTCTAGATCCGACGG+TGG | - | chr5_4:22908964-22908983 | Msa0844460:intron | 60.0% |
| ! | GTTCTAGATCCGACGGTGGC+TGG | - | chr5_4:22908968-22908987 | Msa0844460:intron | 60.0% |
| TGGGGATTGGGCGTCCAAAC+AGG | + | chr5_4:22910585-22910604 | None:intergenic | 60.0% | |
| TTTGGACGCCCAATCCCCAC+TGG | - | chr5_4:22910586-22910605 | Msa0844460:CDS | 60.0% | |
| CGCGGTCTCTTCAAGCTGTC+AGG | + | chr5_4:22912186-22912205 | None:intergenic | 60.0% | |
| TCATCGATGCCCCCGGACAC+AGG | - | chr5_4:22907730-22907749 | Msa0844460:intron | 65.0% | |
| CATCGATGCCCCCGGACACA+GGG | - | chr5_4:22907731-22907750 | Msa0844460:intron | 65.0% | |
| ACGGGTCACCCTGGTCGGAT+TGG | - | chr5_4:22908554-22908573 | Msa0844460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 22906832 | 22912448 | 22906832 | ID=Msa0844460;Name=Msa0844460 |
| chr5_4 | mRNA | 22906832 | 22912448 | 22906832 | ID=Msa0844460-mRNA-1;Parent=Msa0844460;Name=Msa0844460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=113|1|1|1|0.71|0.75|8|233|556 |
| chr5_4 | exon | 22906832 | 22907133 | 22906832 | ID=Msa0844460-mRNA-1:exon:9369;Parent=Msa0844460-mRNA-1 |
| chr5_4 | exon | 22907629 | 22907721 | 22907629 | ID=Msa0844460-mRNA-1:exon:9368;Parent=Msa0844460-mRNA-1 |
| chr5_4 | exon | 22907812 | 22907868 | 22907812 | ID=Msa0844460-mRNA-1:exon:9367;Parent=Msa0844460-mRNA-1 |
| chr5_4 | exon | 22908054 | 22908110 | 22908054 | ID=Msa0844460-mRNA-1:exon:9366;Parent=Msa0844460-mRNA-1 |
| chr5_4 | exon | 22909506 | 22909558 | 22909506 | ID=Msa0844460-mRNA-1:exon:9365;Parent=Msa0844460-mRNA-1 |
| chr5_4 | exon | 22910417 | 22911266 | 22910417 | ID=Msa0844460-mRNA-1:exon:9364;Parent=Msa0844460-mRNA-1 |
| chr5_4 | exon | 22911354 | 22911875 | 22911354 | ID=Msa0844460-mRNA-1:exon:9363;Parent=Msa0844460-mRNA-1 |
| chr5_4 | exon | 22912366 | 22912448 | 22912366 | ID=Msa0844460-mRNA-1:exon:9362;Parent=Msa0844460-mRNA-1 |
| chr5_4 | five_prime_UTR | 22912366 | 22912448 | 22912366 | ID=Msa0844460-mRNA-1:five_prime_utr;Parent=Msa0844460-mRNA-1 |
| chr5_4 | five_prime_UTR | 22911846 | 22911875 | 22911846 | ID=Msa0844460-mRNA-1:five_prime_utr;Parent=Msa0844460-mRNA-1 |
| chr5_4 | CDS | 22911354 | 22911845 | 22911354 | ID=Msa0844460-mRNA-1:cds;Parent=Msa0844460-mRNA-1 |
| chr5_4 | CDS | 22910417 | 22911266 | 22910417 | ID=Msa0844460-mRNA-1:cds;Parent=Msa0844460-mRNA-1 |
| chr5_4 | CDS | 22909506 | 22909558 | 22909506 | ID=Msa0844460-mRNA-1:cds;Parent=Msa0844460-mRNA-1 |
| chr5_4 | CDS | 22908054 | 22908110 | 22908054 | ID=Msa0844460-mRNA-1:cds;Parent=Msa0844460-mRNA-1 |
| chr5_4 | CDS | 22907812 | 22907868 | 22907812 | ID=Msa0844460-mRNA-1:cds;Parent=Msa0844460-mRNA-1 |
| chr5_4 | CDS | 22907629 | 22907721 | 22907629 | ID=Msa0844460-mRNA-1:cds;Parent=Msa0844460-mRNA-1 |
| chr5_4 | CDS | 22907065 | 22907133 | 22907065 | ID=Msa0844460-mRNA-1:cds;Parent=Msa0844460-mRNA-1 |
| chr5_4 | three_prime_UTR | 22906832 | 22907064 | 22906832 | ID=Msa0844460-mRNA-1:three_prime_utr;Parent=Msa0844460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
