Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844470 | KAF7113880.1 | 41.593 | 113 | 60 | 3 | 5 | 116 | 4 | 111 | 1.64e-22 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844470 | sp|Q8LGG0|FKB12_ARATH | 37.168 | 113 | 65 | 2 | 5 | 116 | 4 | 111 | 4.28e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844470 | A0A834FXE7 | 41.593 | 113 | 60 | 3 | 5 | 116 | 4 | 111 | 7.82e-23 | 95.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002230 | Msa0844470 | 0.807801 | 4.233390e-50 | -8.615850e-47 |
| Msa0002240 | Msa0844470 | 0.809136 | 2.195953e-50 | -8.615850e-47 |
| Msa0011660 | Msa0844470 | -0.843098 | 1.726060e-58 | -8.615850e-47 |
| Msa0632740 | Msa0844470 | 0.819486 | 1.132731e-52 | -8.615850e-47 |
| Msa0656530 | Msa0844470 | 0.804294 | 2.314664e-49 | -8.615850e-47 |
| Msa0680200 | Msa0844470 | 0.821727 | 3.461331e-53 | -8.615850e-47 |
| Msa0701010 | Msa0844470 | 0.825612 | 4.262305e-54 | -8.615850e-47 |
| Msa0718100 | Msa0844470 | 0.814052 | 1.874868e-51 | -8.615850e-47 |
| Msa0731940 | Msa0844470 | 0.801900 | 7.237944e-49 | -8.615850e-47 |
| Msa0747100 | Msa0844470 | 0.813933 | 1.991801e-51 | -8.615850e-47 |
| Msa0750650 | Msa0844470 | 0.851329 | 9.530317e-61 | -8.615850e-47 |
| Msa0756460 | Msa0844470 | 0.819488 | 1.131531e-52 | -8.615850e-47 |
| Msa0768290 | Msa0844470 | 0.860901 | 1.494860e-63 | -8.615850e-47 |
| Msa0768370 | Msa0844470 | 0.824105 | 9.666906e-54 | -8.615850e-47 |
| Msa0824590 | Msa0844470 | 0.801417 | 9.092481e-49 | -8.615850e-47 |
| Msa0826320 | Msa0844470 | 0.804986 | 1.660029e-49 | -8.615850e-47 |
| Msa0832040 | Msa0844470 | 0.806610 | 7.565249e-50 | -8.615850e-47 |
| Msa0150270 | Msa0844470 | 0.801124 | 1.043953e-48 | -8.615850e-47 |
| Msa0150840 | Msa0844470 | 0.870645 | 1.248066e-66 | -8.615850e-47 |
| Msa0166560 | Msa0844470 | 0.835049 | 2.103352e-56 | -8.615850e-47 |
| Msa0180500 | Msa0844470 | 0.858924 | 5.896489e-63 | -8.615850e-47 |
| Msa0234270 | Msa0844470 | 0.812156 | 4.884194e-51 | -8.615850e-47 |
| Msa0395790 | Msa0844470 | 0.824133 | 9.520888e-54 | -8.615850e-47 |
| Msa0424320 | Msa0844470 | 0.829852 | 4.081742e-55 | -8.615850e-47 |
| Msa0425790 | Msa0844470 | 0.816255 | 6.077571e-52 | -8.615850e-47 |
| Msa0465200 | Msa0844470 | 0.800195 | 1.615241e-48 | -8.615850e-47 |
| Msa0275010 | Msa0844470 | 0.815362 | 9.611443e-52 | -8.615850e-47 |
| Msa0278110 | Msa0844470 | 0.815115 | 1.090397e-51 | -8.615850e-47 |
| Msa0326480 | Msa0844470 | 0.802323 | 5.925690e-49 | -8.615850e-47 |
| Msa0338490 | Msa0844470 | 0.845563 | 3.756371e-59 | -8.615850e-47 |
| Msa0342750 | Msa0844470 | 0.819186 | 1.325426e-52 | -8.615850e-47 |
| Msa0359030 | Msa0844470 | 0.815292 | 9.963421e-52 | -8.615850e-47 |
| Msa0498650 | Msa0844470 | 0.806718 | 7.180951e-50 | -8.615850e-47 |
| Msa0519000 | Msa0844470 | 0.807572 | 4.735187e-50 | -8.615850e-47 |
| Msa0523940 | Msa0844470 | 0.847490 | 1.118917e-59 | -8.615850e-47 |
| Msa0529040 | Msa0844470 | 0.819344 | 1.219844e-52 | -8.615850e-47 |
| Msa0532990 | Msa0844470 | 0.815322 | 9.811124e-52 | -8.615850e-47 |
| Msa0539530 | Msa0844470 | -0.823263 | 1.521791e-53 | -8.615850e-47 |
| Msa0545700 | Msa0844470 | 0.821365 | 4.197779e-53 | -8.615850e-47 |
| Msa0585230 | Msa0844470 | 0.810185 | 1.306937e-50 | -8.615850e-47 |
| Msa0594660 | Msa0844470 | 0.809255 | 2.071004e-50 | -8.615850e-47 |
| Msa0844410 | Msa0844470 | 0.990898 | 7.109716e-185 | -8.615850e-47 |
| Msa0844420 | Msa0844470 | 0.895291 | 1.101498e-75 | -8.615850e-47 |
| Msa0844440 | Msa0844470 | 0.836644 | 8.295207e-57 | -8.615850e-47 |
| Msa0844450 | Msa0844470 | 0.853815 | 1.861880e-61 | -8.615850e-47 |
| Msa0844460 | Msa0844470 | 0.835183 | 1.946342e-56 | -8.615850e-47 |
| Msa0844470 | Msa0844480 | 0.836299 | 1.015229e-56 | -8.615850e-47 |
| Msa0844470 | Msa0844490 | 0.895998 | 5.621797e-76 | -8.615850e-47 |
| Msa0844470 | Msa0844500 | 0.839313 | 1.707807e-57 | -8.615850e-47 |
| Msa0844470 | Msa0844510 | 0.825968 | 3.510028e-54 | -8.615850e-47 |
| Msa0844470 | Msa0844520 | 0.805166 | 1.522272e-49 | -8.615850e-47 |
| Msa0844470 | Msa0877250 | 0.819062 | 1.414799e-52 | -8.615850e-47 |
| Msa0844470 | Msa0888130 | 0.834017 | 3.821765e-56 | -8.615850e-47 |
| Msa0844470 | Msa0888420 | 0.815336 | 9.740395e-52 | -8.615850e-47 |
| Msa0844470 | Msa0890310 | 0.818972 | 1.483169e-52 | -8.615850e-47 |
| Msa0844470 | Msa0899430 | 0.812593 | 3.921116e-51 | -8.615850e-47 |
| Msa0844470 | Msa0899450 | 0.820290 | 7.418415e-53 | -8.615850e-47 |
| Msa0844470 | Msa0903620 | 0.839264 | 1.758569e-57 | -8.615850e-47 |
| Msa0844470 | Msa0907950 | 0.807705 | 4.435901e-50 | -8.615850e-47 |
| Msa0844470 | Msa0914760 | 0.840493 | 8.411971e-58 | -8.615850e-47 |
| Msa0844470 | Msa0927380 | 0.805479 | 1.308624e-49 | -8.615850e-47 |
| Msa0844470 | Msa0936300 | 0.853662 | 2.060711e-61 | -8.615850e-47 |
| Msa0844470 | Msa0940520 | 0.821043 | 4.979055e-53 | -8.615850e-47 |
| Msa0844470 | Msa0952720 | 0.819507 | 1.120303e-52 | -8.615850e-47 |
| Msa0844470 | Msa0953120 | 0.823850 | 1.109125e-53 | -8.615850e-47 |
| Msa0844470 | Msa0958550 | 0.811353 | 7.304624e-51 | -8.615850e-47 |
| Msa0844470 | Msa0966750 | 0.855657 | 5.444966e-62 | -8.615850e-47 |
| Msa0844470 | Msa0967380 | 0.818478 | 1.919163e-52 | -8.615850e-47 |
| Msa0844470 | Msa0973100 | 0.843747 | 1.158679e-58 | -8.615850e-47 |
| Msa0844470 | Msa0974080 | 0.804329 | 2.276442e-49 | -8.615850e-47 |
| Msa0844470 | Msa1000860 | 0.821297 | 4.352115e-53 | -8.615850e-47 |
| Msa0844470 | Msa1000900 | 0.809100 | 2.236144e-50 | -8.615850e-47 |
| Msa0844470 | Msa1075540 | 0.810714 | 1.004864e-50 | -8.615850e-47 |
| Msa0844470 | Msa1108690 | 0.819041 | 1.430030e-52 | -8.615850e-47 |
| Msa0844470 | Msa1121480 | 0.802268 | 6.080648e-49 | -8.615850e-47 |
| Msa0844470 | Msa1121490 | 0.812936 | 3.298887e-51 | -8.615850e-47 |
| Msa0844470 | Msa1124410 | 0.812226 | 4.716449e-51 | -8.615850e-47 |
| Msa0844470 | Msa1137570 | 0.827814 | 1.270534e-54 | -8.615850e-47 |
| Msa0844470 | Msa1156020 | 0.801691 | 7.991769e-49 | -8.615850e-47 |
| Msa0844470 | Msa1178180 | 0.828396 | 9.204138e-55 | -8.615850e-47 |
| Msa0844470 | Msa1227730 | 0.844853 | 5.845191e-59 | -8.615850e-47 |
| Msa0844470 | Msa1237020 | 0.827817 | 1.268789e-54 | -8.615850e-47 |
| Msa0844470 | Msa1238930 | 0.803538 | 3.323199e-49 | -8.615850e-47 |
| Msa0844470 | Msa1276600 | 0.811097 | 8.300933e-51 | -8.615850e-47 |
| Msa0844470 | Msa1284680 | 0.806468 | 8.107451e-50 | -8.615850e-47 |
| Msa0844470 | Msa1286800 | 0.833857 | 4.191061e-56 | -8.615850e-47 |
| Msa0844470 | Msa1287190 | 0.832346 | 9.959648e-56 | -8.615850e-47 |
| Msa0844470 | Msa1313320 | 0.804713 | 1.892655e-49 | -8.615850e-47 |
| Msa0844470 | Msa1350680 | 0.812822 | 3.494065e-51 | -8.615850e-47 |
| Msa0844470 | Msa1366810 | 0.807528 | 4.836055e-50 | -8.615850e-47 |
| Msa0844470 | Msa1366970 | 0.842277 | 2.852269e-58 | -8.615850e-47 |
| Msa0844470 | Msa1395900 | 0.802240 | 6.163042e-49 | -8.615850e-47 |
| Msa0844470 | Msa1412530 | 0.848356 | 6.458672e-60 | -8.615850e-47 |
| Msa0844470 | Msa1458750 | 0.809303 | 2.022661e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844470 | MtrunA17_Chr2g0279511 | 36.937 | 111 | 64 | 3 | 5 | 114 | 4 | 109 | 8.39e-21 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844470 | AT5G64350.1 | 37.168 | 113 | 65 | 2 | 5 | 116 | 4 | 111 | 4.35e-22 | 84.3 |
Find 51 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTTGATCAACATAATT+TGG | 0.160239 | 5_4:+22949531 | Msa0844470:three_prime_UTR |
| AGTTTGCTCCAAACGATATC+TGG | 0.296710 | 5_4:-22946762 | None:intergenic |
| AAAGGTTTCGCACGTGTTCC+AGG | 0.355891 | 5_4:-22948127 | None:intergenic |
| TGGAACACGTGCGAAACCTT+TGG | 0.373830 | 5_4:+22948129 | Msa0844470:CDS |
| TATATTATTTATATATTGAA+TGG | 0.389076 | 5_4:-22946714 | None:intergenic |
| CGAATTCATTGTGTCTGTTA+CGG | 0.389271 | 5_4:+22946906 | Msa0844470:CDS |
| CAAACTCAATTATTATTGTA+TGG | 0.398935 | 5_4:+22949471 | Msa0844470:three_prime_UTR |
| CTGTCATGCAGATGCGAGTT+GGG | 0.404005 | 5_4:+22948551 | Msa0844470:CDS |
| TTGAATGGTTGAAACAGAAC+AGG | 0.418033 | 5_4:-22946699 | None:intergenic |
| TGTTGATCAACAAATTGATA+AGG | 0.424040 | 5_4:-22949523 | None:intergenic |
| GTAAGGATCCAGATATCGTT+TGG | 0.437202 | 5_4:+22946754 | Msa0844470:five_prime_UTR |
| CGTAACAGACACAATGAATT+CGG | 0.440767 | 5_4:-22946905 | None:intergenic |
| TGATTTAGCTTTAAGTGATG+TGG | 0.441583 | 5_4:+22949295 | Msa0844470:CDS |
| AATCGAAGATGCCTCTCAAC+AGG | 0.443153 | 5_4:+22946829 | Msa0844470:exon |
| GGGGAAGGTACTGTCATTAG+AGG | 0.444755 | 5_4:+22948163 | Msa0844470:CDS |
| TTAAATTATTATTATGAGCA+TGG | 0.456891 | 5_4:+22949412 | Msa0844470:three_prime_UTR |
| GTGATGTGGGCCACAATCCT+TGG | 0.463346 | 5_4:+22949309 | Msa0844470:CDS |
| TCTCAACAGGCAGCAAACTC+TGG | 0.464067 | 5_4:+22946842 | Msa0844470:CDS |
| AACGGTAATCTCGCTGCTGC+CGG | 0.478602 | 5_4:+22946873 | Msa0844470:CDS |
| ATGCTGAACAACAACTTTGG+AGG | 0.480591 | 5_4:+22947969 | Msa0844470:CDS |
| ATAATTGAGTTTGAGATCAG+TGG | 0.498646 | 5_4:-22949461 | None:intergenic |
| ACAATGCTGAACAACAACTT+TGG | 0.506884 | 5_4:+22947966 | Msa0844470:CDS |
| AGGCAGCAAACTCTGGTGAA+TGG | 0.511533 | 5_4:+22946849 | Msa0844470:CDS |
| GATTTAGCTTTAAGTGATGT+GGG | 0.513269 | 5_4:+22949296 | Msa0844470:CDS |
| TCAAGTACCAAGTCAGTGTT+GGG | 0.514039 | 5_4:-22949341 | None:intergenic |
| GTTGTGGAGGATAAGATGTA+AGG | 0.516268 | 5_4:+22946737 | Msa0844470:five_prime_UTR |
| ATCAAGTACCAAGTCAGTGT+TGG | 0.538271 | 5_4:-22949342 | None:intergenic |
| GTACTTGATGTTGAGCTCGT+GGG | 0.538543 | 5_4:+22949356 | Msa0844470:CDS |
| CAAACTCTGGTGAATGGAAA+CGG | 0.546779 | 5_4:+22946855 | Msa0844470:CDS |
| TATAAATAATATAGTTGTGG+AGG | 0.550777 | 5_4:+22946724 | Msa0844470:five_prime_UTR |
| GGTACTTGATGTTGAGCTCG+TGG | 0.556080 | 5_4:+22949355 | Msa0844470:CDS |
| TGGGGAACAAGCTCGTTTCG+AGG | 0.557634 | 5_4:+22948570 | Msa0844470:CDS |
| TCCCCAATTCTGAAAACCAA+AGG | 0.557703 | 5_4:-22948145 | None:intergenic |
| TATACCGCCCAACACTGACT+TGG | 0.559133 | 5_4:+22949334 | Msa0844470:CDS |
| TGGCAATGCATGATCTGAGT+TGG | 0.566527 | 5_4:+22949551 | Msa0844470:three_prime_UTR |
| GAGGAGGGGTACTACTTGTA+CGG | 0.567397 | 5_4:-22946656 | None:intergenic |
| ATGAATTCGGACATATTGAC+CGG | 0.575821 | 5_4:-22946892 | None:intergenic |
| AGAGTTTGCTGCCTGTTGAG+AGG | 0.580626 | 5_4:-22946840 | None:intergenic |
| GCGGTATATTCCAAGGATTG+TGG | 0.587100 | 5_4:-22949319 | None:intergenic |
| GTGTTGGGCGGTATATTCCA+AGG | 0.594265 | 5_4:-22949326 | None:intergenic |
| TACATTACATTACAGCTCAA+GGG | 0.597584 | 5_4:+22948093 | Msa0844470:intron |
| ATATATAAATAATATAGTTG+TGG | 0.603125 | 5_4:+22946721 | Msa0844470:five_prime_UTR |
| TCAAGGGTAGGACATCCTCC+TGG | 0.609284 | 5_4:+22948109 | Msa0844470:CDS |
| GCTGTCATGCAGATGCGAGT+TGG | 0.614371 | 5_4:+22948550 | Msa0844470:CDS |
| TTACATTACAGCTCAAGGGT+AGG | 0.659169 | 5_4:+22948097 | Msa0844470:intron |
| AATGGTTGAAACAGAACAGG+GGG | 0.686940 | 5_4:-22946696 | None:intergenic |
| AGTACCAAGTCAGTGTTGGG+CGG | 0.691555 | 5_4:-22949338 | None:intergenic |
| TGAATGGTTGAAACAGAACA+GGG | 0.696357 | 5_4:-22946698 | None:intergenic |
| GGTTTCGCACGTGTTCCAGG+AGG | 0.697090 | 5_4:-22948124 | None:intergenic |
| TGTCATGCAGATGCGAGTTG+GGG | 0.703241 | 5_4:+22948552 | Msa0844470:CDS |
| GAATGGTTGAAACAGAACAG+GGG | 0.737191 | 5_4:-22946697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAATAATATAGTTG+TGG | + | chr5_4:22946721-22946740 | Msa0844470:five_prime_UTR | 10.0% |
| !!! | AAAAAGTTATTTTAAGTAAA+GGG | - | chr5_4:22948789-22948808 | None:intergenic | 10.0% |
| !! | ATTAATCAAATCAAATGTAA+GGG | - | chr5_4:22947908-22947927 | None:intergenic | 15.0% |
| !! | AATTAATCAAATCAAATGTA+AGG | - | chr5_4:22947909-22947928 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTACATGAT+TGG | + | chr5_4:22948292-22948311 | Msa0844470:intron | 15.0% |
| !! | ATTAATAGTATATAAAGGAA+TGG | - | chr5_4:22948758-22948777 | None:intergenic | 15.0% |
| !!! | AAAGCATTAATAGTATATAA+AGG | - | chr5_4:22948763-22948782 | None:intergenic | 15.0% |
| !!! | CAAAAAGTTATTTTAAGTAA+AGG | - | chr5_4:22948790-22948809 | None:intergenic | 15.0% |
| !!! | TAAAATAACTTTTTGTCATT+TGG | + | chr5_4:22948795-22948814 | Msa0844470:intron | 15.0% |
| !!! | AAAATAACTTTTTGTCATTT+GGG | + | chr5_4:22948796-22948815 | Msa0844470:intron | 15.0% |
| !! | CAAAATGAATAATAATAGTT+GGG | - | chr5_4:22949255-22949274 | None:intergenic | 15.0% |
| !! | ACAAAATGAATAATAATAGT+TGG | - | chr5_4:22949256-22949275 | None:intergenic | 15.0% |
| !! | TTAAATTATTATTATGAGCA+TGG | + | chr5_4:22949412-22949431 | Msa0844470:three_prime_UTR | 15.0% |
| !! | TATAAATAATATAGTTGTGG+AGG | + | chr5_4:22946724-22946743 | Msa0844470:five_prime_UTR | 20.0% |
| !! | TTGATAGATAGAAATAGAAA+GGG | - | chr5_4:22946948-22946967 | None:intergenic | 20.0% |
| !! | TTTATAATAAGCCTAAATCA+TGG | + | chr5_4:22948641-22948660 | Msa0844470:intron | 20.0% |
| !!! | AAATAACTTTTTGTCATTTG+GGG | + | chr5_4:22948797-22948816 | Msa0844470:intron | 20.0% |
| !! | AAGAAACAAATAAGCTAAAA+AGG | - | chr5_4:22948893-22948912 | None:intergenic | 20.0% |
| !!! | GCTATTTTTATTACAAAAGA+TGG | - | chr5_4:22948966-22948985 | None:intergenic | 20.0% |
| !! | AATTTAGTGATAAGTGTTTA+TGG | + | chr5_4:22948998-22949017 | Msa0844470:intron | 20.0% |
| !! | AAAGGAAATTTAATAAATCC+TGG | - | chr5_4:22949061-22949080 | None:intergenic | 20.0% |
| !! | CAAACTCAATTATTATTGTA+TGG | + | chr5_4:22949471-22949490 | Msa0844470:three_prime_UTR | 20.0% |
| !!! | ATTTGTTGATCAACATAATT+TGG | + | chr5_4:22949531-22949550 | Msa0844470:three_prime_UTR | 20.0% |
| ! | TGATAGATAGAAATAGAAAG+GGG | - | chr5_4:22946947-22946966 | None:intergenic | 25.0% |
| !! | GTTGATAGATAGAAATAGAA+AGG | - | chr5_4:22946949-22946968 | None:intergenic | 25.0% |
| !! | TAGCTTTTGCAAATTAATTC+TGG | + | chr5_4:22947062-22947081 | Msa0844470:intron | 25.0% |
| !! | AGCTTTTGCAAATTAATTCT+GGG | + | chr5_4:22947063-22947082 | Msa0844470:intron | 25.0% |
| !! | ATTGTAAAACTGCTCTAAAT+TGG | - | chr5_4:22947238-22947257 | None:intergenic | 25.0% |
| ! | AATTTGTATCTAGTGATCTA+TGG | - | chr5_4:22947400-22947419 | None:intergenic | 25.0% |
| ! | AAATTGTGTACCTTTGAATT+AGG | + | chr5_4:22947453-22947472 | Msa0844470:intron | 25.0% |
| ! | AACATAATTAACCGTCTAAT+GGG | + | chr5_4:22947565-22947584 | Msa0844470:intron | 25.0% |
| ! | ATGACGTTTAAATAGCTAAA+CGG | + | chr5_4:22947588-22947607 | Msa0844470:intron | 25.0% |
| !!! | AGGGTTGATAAATATAATGT+TGG | - | chr5_4:22947807-22947826 | None:intergenic | 25.0% |
| ! | TAGTATATAAAGGAATGGTA+AGG | - | chr5_4:22948753-22948772 | None:intergenic | 25.0% |
| ! | TAAGTTAAAACAAACAGCAA+AGG | - | chr5_4:22949079-22949098 | None:intergenic | 25.0% |
| !! | TTTAACTTAAACACACACAT+AGG | + | chr5_4:22949090-22949109 | Msa0844470:intron | 25.0% |
| ! | TTAACTTAAACACACACATA+GGG | + | chr5_4:22949091-22949110 | Msa0844470:intron | 25.0% |
| ! | AATACAAATGCTCAATTGAT+CGG | - | chr5_4:22949165-22949184 | None:intergenic | 25.0% |
| ! | TGTTGATCAACAAATTGATA+AGG | - | chr5_4:22949526-22949545 | None:intergenic | 25.0% |
| CATATCATCAGTAACAAAGA+AGG | + | chr5_4:22947424-22947443 | Msa0844470:intron | 30.0% | |
| CGGTTAATTATGTTGAATGT+TGG | - | chr5_4:22947559-22947578 | None:intergenic | 30.0% | |
| CAACATAATTAACCGTCTAA+TGG | + | chr5_4:22947564-22947583 | Msa0844470:intron | 30.0% | |
| ATTGGGCTATTGTTACTAAA+TGG | - | chr5_4:22947668-22947687 | None:intergenic | 30.0% | |
| ! | GTTGATGAATATGTGTGATT+GGG | - | chr5_4:22947685-22947704 | None:intergenic | 30.0% |
| !! | AGTTGATGAATATGTGTGAT+TGG | - | chr5_4:22947686-22947705 | None:intergenic | 30.0% |
| TTACATTACATTACAGCTCA+AGG | + | chr5_4:22948092-22948111 | Msa0844470:intron | 30.0% | |
| TACATTACATTACAGCTCAA+GGG | + | chr5_4:22948093-22948112 | Msa0844470:intron | 30.0% | |
| !!! | AAACCTTTGGTTTTCAGAAT+TGG | + | chr5_4:22948142-22948161 | Msa0844470:CDS | 30.0% |
| !!! | AACCTTTGGTTTTCAGAATT+GGG | + | chr5_4:22948143-22948162 | Msa0844470:CDS | 30.0% |
| TATACTCTGTTCTATGTGTA+TGG | + | chr5_4:22948208-22948227 | Msa0844470:intron | 30.0% | |
| !! | TTTTGTTACATGATTGGTTG+TGG | + | chr5_4:22948298-22948317 | Msa0844470:intron | 30.0% |
| TGTGAGTTGCAGTATTATAT+AGG | - | chr5_4:22948449-22948468 | None:intergenic | 30.0% | |
| GCTTATTATAAAGTGAGTGT+TGG | - | chr5_4:22948633-22948652 | None:intergenic | 30.0% | |
| ! | AAATAAGCTAAAAAGGTGCA+TGG | - | chr5_4:22948886-22948905 | None:intergenic | 30.0% |
| !! | TGATTTAGCTTTAAGTGATG+TGG | + | chr5_4:22949295-22949314 | Msa0844470:CDS | 30.0% |
| !! | GATTTAGCTTTAAGTGATGT+GGG | + | chr5_4:22949296-22949315 | Msa0844470:CDS | 30.0% |
| ! | ATAATTGAGTTTGAGATCAG+TGG | - | chr5_4:22949464-22949483 | None:intergenic | 30.0% |
| !! | AAGTTTTTCTGAAAGAGGAG+GGG | - | chr5_4:22946673-22946692 | None:intergenic | 35.0% |
| !! | CAAGTTTTTCTGAAAGAGGA+GGG | - | chr5_4:22946674-22946693 | None:intergenic | 35.0% |
| !! | ACAAGTTTTTCTGAAAGAGG+AGG | - | chr5_4:22946675-22946694 | None:intergenic | 35.0% |
| !! | GGTACAAGTTTTTCTGAAAG+AGG | - | chr5_4:22946678-22946697 | None:intergenic | 35.0% |
| TGAATGGTTGAAACAGAACA+GGG | - | chr5_4:22946701-22946720 | None:intergenic | 35.0% | |
| TTGAATGGTTGAAACAGAAC+AGG | - | chr5_4:22946702-22946721 | None:intergenic | 35.0% | |
| ATGAATTCGGACATATTGAC+CGG | - | chr5_4:22946895-22946914 | None:intergenic | 35.0% | |
| CGTAACAGACACAATGAATT+CGG | - | chr5_4:22946908-22946927 | None:intergenic | 35.0% | |
| CGAATTCATTGTGTCTGTTA+CGG | + | chr5_4:22946906-22946925 | Msa0844470:CDS | 35.0% | |
| AATGCCACTAAACTTTCTAC+TGG | + | chr5_4:22947086-22947105 | Msa0844470:intron | 35.0% | |
| AGATCCAGTAGAAAGTTTAG+TGG | - | chr5_4:22947093-22947112 | None:intergenic | 35.0% | |
| GATCACAAGACAAAGGAAAT+TGG | - | chr5_4:22947327-22947346 | None:intergenic | 35.0% | |
| CCTTCATCAACCTAATTCAA+AGG | - | chr5_4:22947466-22947485 | None:intergenic | 35.0% | |
| !! | CCTTTGAATTAGGTTGATGA+AGG | + | chr5_4:22947463-22947482 | Msa0844470:intron | 35.0% |
| TTAAACGTCATCCCATTAGA+CGG | - | chr5_4:22947579-22947598 | None:intergenic | 35.0% | |
| ATTTAGATAAGCCCAATGAG+AGG | - | chr5_4:22947627-22947646 | None:intergenic | 35.0% | |
| TCTCATTGGGCTTATCTAAA+TGG | + | chr5_4:22947626-22947645 | Msa0844470:intron | 35.0% | |
| TATCAACCCTCAAAACTTAG+TGG | + | chr5_4:22947817-22947836 | Msa0844470:intron | 35.0% | |
| ATCAACCCTCAAAACTTAGT+GGG | + | chr5_4:22947818-22947837 | Msa0844470:intron | 35.0% | |
| !!! | AGGGTTGATCTGTTTTTTTC+TGG | - | chr5_4:22947889-22947908 | None:intergenic | 35.0% |
| TTACGATTGTGATGATAACC+AGG | + | chr5_4:22947938-22947957 | Msa0844470:intron | 35.0% | |
| ACAATGCTGAACAACAACTT+TGG | + | chr5_4:22947966-22947985 | Msa0844470:CDS | 35.0% | |
| !!! | ACCTTTGGTTTTCAGAATTG+GGG | + | chr5_4:22948144-22948163 | Msa0844470:CDS | 35.0% |
| TTTCAACTATGTGTGTGTGT+AGG | + | chr5_4:22948517-22948536 | Msa0844470:intron | 35.0% | |
| GATAAACCTACCACTTTAAG+TGG | - | chr5_4:22948693-22948712 | None:intergenic | 35.0% | |
| CACTCTCTTCATTCTCTTAT+TGG | - | chr5_4:22948715-22948734 | None:intergenic | 35.0% | |
| ATACTGTTTGTGAGAGCTTA+TGG | + | chr5_4:22948842-22948861 | Msa0844470:intron | 35.0% | |
| ! | AATAAATCCTGGCCATGTTT+TGG | - | chr5_4:22949050-22949069 | None:intergenic | 35.0% |
| AATGGTTGAAACAGAACAGG+GGG | - | chr5_4:22946699-22946718 | None:intergenic | 40.0% | |
| GAATGGTTGAAACAGAACAG+GGG | - | chr5_4:22946700-22946719 | None:intergenic | 40.0% | |
| GTTGTGGAGGATAAGATGTA+AGG | + | chr5_4:22946737-22946756 | Msa0844470:five_prime_UTR | 40.0% | |
| GTAAGGATCCAGATATCGTT+TGG | + | chr5_4:22946754-22946773 | Msa0844470:five_prime_UTR | 40.0% | |
| ! | AGTTTGCTCCAAACGATATC+TGG | - | chr5_4:22946765-22946784 | None:intergenic | 40.0% |
| CAAACTCTGGTGAATGGAAA+CGG | + | chr5_4:22946855-22946874 | Msa0844470:CDS | 40.0% | |
| GGATCTATAAAGCTAGTGCT+AGG | + | chr5_4:22947107-22947126 | Msa0844470:intron | 40.0% | |
| AACCATGACCAGAATTTGTG+TGG | + | chr5_4:22947280-22947299 | Msa0844470:intron | 40.0% | |
| AACCACACAAATTCTGGTCA+TGG | - | chr5_4:22947285-22947304 | None:intergenic | 40.0% | |
| GAACTCAACCACACAAATTC+TGG | - | chr5_4:22947291-22947310 | None:intergenic | 40.0% | |
| ACAAAGGAAATTGGTCGACT+CGG | - | chr5_4:22947318-22947337 | None:intergenic | 40.0% | |
| TTCCTTTGTCTTGTGATCTG+TGG | + | chr5_4:22947329-22947348 | Msa0844470:intron | 40.0% | |
| TACCACAGATCACAAGACAA+AGG | - | chr5_4:22947334-22947353 | None:intergenic | 40.0% | |
| TTGTGATCTGTGGTAAAGTG+TGG | + | chr5_4:22947339-22947358 | Msa0844470:intron | 40.0% | |
| GTTATCCCTCTCATAGTTGT+CGG | - | chr5_4:22947505-22947524 | None:intergenic | 40.0% | |
| GGTGAAAACCTAGAGTTAGA+CGG | - | chr5_4:22947538-22947557 | None:intergenic | 40.0% | |
| TTTAAATAGCTAAACGGCCG+AGG | + | chr5_4:22947594-22947613 | Msa0844470:intron | 40.0% | |
| TTAAATAGCTAAACGGCCGA+GGG | + | chr5_4:22947595-22947614 | Msa0844470:intron | 40.0% | |
| GTTACTAAATGGACCGTGAT+GGG | - | chr5_4:22947657-22947676 | None:intergenic | 40.0% | |
| TGTTACTAAATGGACCGTGA+TGG | - | chr5_4:22947658-22947677 | None:intergenic | 40.0% | |
| !! | ACACACCCACTAAGTTTTGA+GGG | - | chr5_4:22947826-22947845 | None:intergenic | 40.0% |
| ATGCTGAACAACAACTTTGG+AGG | + | chr5_4:22947969-22947988 | Msa0844470:CDS | 40.0% | |
| ! | CAACAACTTTGGAGGTTACT+TGG | + | chr5_4:22947977-22947996 | Msa0844470:intron | 40.0% |
| TTACATTACAGCTCAAGGGT+AGG | + | chr5_4:22948097-22948116 | Msa0844470:intron | 40.0% | |
| ! | TCCCCAATTCTGAAAACCAA+AGG | - | chr5_4:22948148-22948167 | None:intergenic | 40.0% |
| !! | TTGGTTTTCAGAATTGGGGA+AGG | + | chr5_4:22948148-22948167 | Msa0844470:CDS | 40.0% |
| CACGTTCAAAGTCACATGAT+TGG | + | chr5_4:22948259-22948278 | Msa0844470:intron | 40.0% | |
| ! | CAAAGTCACATGATTGGTTG+TGG | + | chr5_4:22948265-22948284 | Msa0844470:intron | 40.0% |
| TGTGAGACACACCATGATTT+AGG | - | chr5_4:22948655-22948674 | None:intergenic | 40.0% | |
| ! | TGTGTCTCACACTTTGGAAA+TGG | + | chr5_4:22948664-22948683 | Msa0844470:intron | 40.0% |
| ! | GTGTCTCACACTTTGGAAAT+GGG | + | chr5_4:22948665-22948684 | Msa0844470:intron | 40.0% |
| ! | GAAATGGGTTCCACTTAAAG+TGG | + | chr5_4:22948680-22948699 | Msa0844470:intron | 40.0% |
| GGACGAACAACTCAATTAAG+TGG | - | chr5_4:22949029-22949048 | None:intergenic | 40.0% | |
| TGAGTTGTTCGTCCAAAACA+TGG | + | chr5_4:22949035-22949054 | Msa0844470:intron | 40.0% | |
| ACTTAAACACACACATAGGG+TGG | + | chr5_4:22949094-22949113 | Msa0844470:intron | 40.0% | |
| CAAACGTCTATGACTTGAGT+AGG | - | chr5_4:22949127-22949146 | None:intergenic | 40.0% | |
| TCAAGTACCAAGTCAGTGTT+GGG | - | chr5_4:22949344-22949363 | None:intergenic | 40.0% | |
| ATCAAGTACCAAGTCAGTGT+TGG | - | chr5_4:22949345-22949364 | None:intergenic | 40.0% | |
| AATCGAAGATGCCTCTCAAC+AGG | + | chr5_4:22946829-22946848 | Msa0844470:exon | 45.0% | |
| ACAACTCCGACAACTATGAG+AGG | + | chr5_4:22947496-22947515 | Msa0844470:intron | 45.0% | |
| CAACTCCGACAACTATGAGA+GGG | + | chr5_4:22947497-22947516 | Msa0844470:intron | 45.0% | |
| CCTAGAGTTAGACGGAATGA+GGG | - | chr5_4:22947530-22947549 | None:intergenic | 45.0% | |
| ACCTAGAGTTAGACGGAATG+AGG | - | chr5_4:22947531-22947550 | None:intergenic | 45.0% | |
| CTAAATGGTCCAACCCATCA+CGG | + | chr5_4:22947641-22947660 | Msa0844470:intron | 45.0% | |
| ! | CACACACCCACTAAGTTTTG+AGG | - | chr5_4:22947827-22947846 | None:intergenic | 45.0% |
| TCATGGTGTGTCTCACACTT+TGG | + | chr5_4:22948658-22948677 | Msa0844470:intron | 45.0% | |
| TGGGTTCCACTTAAAGTGGT+AGG | + | chr5_4:22948684-22948703 | Msa0844470:intron | 45.0% | |
| GCGGTATATTCCAAGGATTG+TGG | - | chr5_4:22949322-22949341 | None:intergenic | 45.0% | |
| GTACTTGATGTTGAGCTCGT+GGG | + | chr5_4:22949356-22949375 | Msa0844470:CDS | 45.0% | |
| ! | GTTGAGCTCGTGGGTATTTT+TGG | + | chr5_4:22949365-22949384 | Msa0844470:CDS | 45.0% |
| TGGCAATGCATGATCTGAGT+TGG | + | chr5_4:22949551-22949570 | Msa0844470:three_prime_UTR | 45.0% | |
| !! | TATATTATTTATATATTGAA+TGG | - | chr5_4:22946717-22946736 | None:intergenic | 5.0% |
| !! | TAATCTTATAATATAAATTA+TGG | - | chr5_4:22947731-22947750 | None:intergenic | 5.0% |
| !! | ATTATTTAATTAATCAATTA+TGG | - | chr5_4:22947780-22947799 | None:intergenic | 5.0% |
| !! | AAAAAATAATAAAAAATAGA+AGG | - | chr5_4:22948019-22948038 | None:intergenic | 5.0% |
| !! | GAGGAGGGGTACTACTTGTA+CGG | - | chr5_4:22946659-22946678 | None:intergenic | 50.0% |
| !! | AGAGTTTGCTGCCTGTTGAG+AGG | - | chr5_4:22946843-22946862 | None:intergenic | 50.0% |
| TCTCAACAGGCAGCAAACTC+TGG | + | chr5_4:22946842-22946861 | Msa0844470:CDS | 50.0% | |
| AGGCAGCAAACTCTGGTGAA+TGG | + | chr5_4:22946849-22946868 | Msa0844470:CDS | 50.0% | |
| CCCTCATTCCGTCTAACTCT+AGG | + | chr5_4:22947527-22947546 | Msa0844470:intron | 50.0% | |
| !! | CTAAATGGACCGTGATGGGT+TGG | - | chr5_4:22947653-22947672 | None:intergenic | 50.0% |
| TGTTCAGCATTGTCAGCTCC+TGG | - | chr5_4:22947959-22947978 | None:intergenic | 50.0% | |
| AAAGGTTTCGCACGTGTTCC+AGG | - | chr5_4:22948130-22948149 | None:intergenic | 50.0% | |
| TGGAACACGTGCGAAACCTT+TGG | + | chr5_4:22948129-22948148 | Msa0844470:CDS | 50.0% | |
| !! | GGGGAAGGTACTGTCATTAG+AGG | + | chr5_4:22948163-22948182 | Msa0844470:CDS | 50.0% |
| CTGTCATGCAGATGCGAGTT+GGG | + | chr5_4:22948551-22948570 | Msa0844470:CDS | 50.0% | |
| TGTCATGCAGATGCGAGTTG+GGG | + | chr5_4:22948552-22948571 | Msa0844470:CDS | 50.0% | |
| TGTTCGTCCAAAACATGGCC+AGG | + | chr5_4:22949040-22949059 | Msa0844470:intron | 50.0% | |
| GTGTTGGGCGGTATATTCCA+AGG | - | chr5_4:22949329-22949348 | None:intergenic | 50.0% | |
| ! | TATACCGCCCAACACTGACT+TGG | + | chr5_4:22949334-22949353 | Msa0844470:CDS | 50.0% |
| ! | AGTACCAAGTCAGTGTTGGG+CGG | - | chr5_4:22949341-22949360 | None:intergenic | 50.0% |
| GGTACTTGATGTTGAGCTCG+TGG | + | chr5_4:22949355-22949374 | Msa0844470:CDS | 50.0% | |
| AACGGTAATCTCGCTGCTGC+CGG | + | chr5_4:22946873-22946892 | Msa0844470:CDS | 55.0% | |
| TCAAGGGTAGGACATCCTCC+TGG | + | chr5_4:22948109-22948128 | Msa0844470:CDS | 55.0% | |
| GCTGTCATGCAGATGCGAGT+TGG | + | chr5_4:22948550-22948569 | Msa0844470:CDS | 55.0% | |
| TGGGGAACAAGCTCGTTTCG+AGG | + | chr5_4:22948570-22948589 | Msa0844470:CDS | 55.0% | |
| GTGATGTGGGCCACAATCCT+TGG | + | chr5_4:22949309-22949328 | Msa0844470:CDS | 55.0% | |
| ATAGCTAAACGGCCGAGGGC+AGG | + | chr5_4:22947599-22947618 | Msa0844470:intron | 60.0% | |
| TAGCTAAACGGCCGAGGGCA+GGG | + | chr5_4:22947600-22947619 | Msa0844470:intron | 60.0% | |
| CAATGAGAGGTCCCTGCCCT+CGG | - | chr5_4:22947614-22947633 | None:intergenic | 60.0% | |
| GAGGGCAGGGACCTCTCATT+GGG | + | chr5_4:22947613-22947632 | Msa0844470:intron | 60.0% | |
| GGTTTCGCACGTGTTCCAGG+AGG | - | chr5_4:22948127-22948146 | None:intergenic | 60.0% | |
| CGAGGGCAGGGACCTCTCAT+TGG | + | chr5_4:22947612-22947631 | Msa0844470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 22946632 | 22949589 | 22946632 | ID=Msa0844470;Name=Msa0844470 |
| chr5_4 | mRNA | 22946632 | 22949589 | 22946632 | ID=Msa0844470-mRNA-1;Parent=Msa0844470;Name=Msa0844470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=205|1|1|1|1|1|5|189|121 |
| chr5_4 | exon | 22946632 | 22946927 | 22946632 | ID=Msa0844470-mRNA-1:exon:9355;Parent=Msa0844470-mRNA-1 |
| chr5_4 | exon | 22947960 | 22947990 | 22947960 | ID=Msa0844470-mRNA-1:exon:9356;Parent=Msa0844470-mRNA-1 |
| chr5_4 | exon | 22948108 | 22948184 | 22948108 | ID=Msa0844470-mRNA-1:exon:9357;Parent=Msa0844470-mRNA-1 |
| chr5_4 | exon | 22948539 | 22948591 | 22948539 | ID=Msa0844470-mRNA-1:exon:9358;Parent=Msa0844470-mRNA-1 |
| chr5_4 | exon | 22949287 | 22949589 | 22949287 | ID=Msa0844470-mRNA-1:exon:9359;Parent=Msa0844470-mRNA-1 |
| chr5_4 | five_prime_UTR | 22946632 | 22946836 | 22946632 | ID=Msa0844470-mRNA-1:five_prime_utr;Parent=Msa0844470-mRNA-1 |
| chr5_4 | CDS | 22946837 | 22946927 | 22946837 | ID=Msa0844470-mRNA-1:cds;Parent=Msa0844470-mRNA-1 |
| chr5_4 | CDS | 22947960 | 22947990 | 22947960 | ID=Msa0844470-mRNA-1:cds;Parent=Msa0844470-mRNA-1 |
| chr5_4 | CDS | 22948108 | 22948184 | 22948108 | ID=Msa0844470-mRNA-1:cds;Parent=Msa0844470-mRNA-1 |
| chr5_4 | CDS | 22948539 | 22948591 | 22948539 | ID=Msa0844470-mRNA-1:cds;Parent=Msa0844470-mRNA-1 |
| chr5_4 | CDS | 22949287 | 22949400 | 22949287 | ID=Msa0844470-mRNA-1:cds;Parent=Msa0844470-mRNA-1 |
| chr5_4 | three_prime_UTR | 22949401 | 22949589 | 22949401 | ID=Msa0844470-mRNA-1:three_prime_utr;Parent=Msa0844470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
