AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844510 MtrunA17_Chr5g0415391 93.484 399 26 0 49 447 1 399 0.0 773
Msa0844510 MtrunA17_Chr1g0200071 74.596 433 110 0 13 445 3 435 0.0 659
Msa0844510 MtrunA17_Chr1g0200091 74.596 433 110 0 13 445 3 435 0.0 659
Msa0844510 MtrunA17_Chr1g0200121 74.365 433 111 0 13 445 3 435 0.0 659
Msa0844510 MtrunA17_Chr4g0005781 73.843 432 113 0 13 444 3 434 0.0 655
Msa0844510 MtrunA17_Chr6g0458111 72.748 433 118 0 13 445 3 435 0.0 651
Msa0844510 MtrunA17_Chr6g0458091 72.748 433 118 0 13 445 3 435 0.0 651
Msa0844510 MtrunA17_Chr1g0193591 70.320 438 130 0 13 450 3 440 0.0 627
Msa0844510 MtrunA17_Chr8g0340771 71.655 441 123 1 13 451 3 443 0.0 624
Msa0844510 MtrunA17_Chr1g0156421 67.593 432 140 0 13 444 3 434 0.0 593
Msa0844510 MtrunA17_Chr1g0204031 68.129 433 133 3 13 445 3 430 0.0 590
Msa0844510 MtrunA17_Chr1g0150331 68.349 436 109 2 13 445 3 412 0.0 584
Msa0844510 MtrunA17_Chr1g0196251 59.305 403 136 2 14 415 5 380 5.76e-165 470
Msa0844510 MtrunA17_Chr2g0319341 64.671 334 116 1 112 443 1 334 2.41e-150 434
Msa0844510 MtrunA17_Chr8g0336511 65.839 322 109 1 15 335 70 391 5.02e-147 424
Msa0844510 MtrunA17_Chr2g0298371 59.692 325 112 2 112 434 1 308 3.23e-128 373
Msa0844510 MtrunA17_Chr2g0318291 67.273 220 69 2 15 233 7 224 8.30e-99 295
Msa0844510 MtrunA17_Chr8g0340371 59.244 238 94 2 13 249 3 238 1.36e-91 277
Msa0844510 MtrunA17_Chr1g0210931 55.124 283 77 3 165 446 1 234 2.67e-90 275
Msa0844510 MtrunA17_Chr6g0483121 34.426 427 272 5 15 436 89 512 3.53e-82 262
Msa0844510 MtrunA17_Chr8g0380091 36.385 426 263 7 16 436 274 696 5.92e-81 264
Msa0844510 MtrunA17_Chr1g0204041 71.605 162 45 1 13 173 3 164 1.55e-77 239
Msa0844510 MtrunA17_Chr8g0392641 33.333 429 278 5 11 434 140 565 1.04e-76 249
Msa0844510 MtrunA17_Chr2g0318281 62.632 190 71 0 253 442 5 194 2.11e-74 233
Msa0844510 MtrunA17_Chr1g0200111 61.932 176 57 1 274 439 1 176 1.47e-69 218
Msa0844510 MtrunA17_Chr1g0156411 68.571 140 44 0 16 155 10 149 9.85e-64 202
Msa0844510 MtrunA17_Chr8g0340361 54.595 185 68 2 274 443 1 184 7.72e-58 188
Msa0844510 MtrunA17_Chr4g0026961 52.247 178 72 3 221 395 45 212 1.44e-47 163
Msa0844510 MtrunA17_Chr2g0298381 76.842 95 22 0 15 109 5 99 2.07e-44 150
Msa0844510 MtrunA17_Chr8g0341021 71.287 101 29 0 13 113 4 104 2.63e-43 148
Msa0844510 MtrunA17_Chr7g0259481 27.586 435 255 16 13 436 59 444 2.77e-32 127
Msa0844510 MtrunA17_Chr2g0319351 78.082 73 16 0 15 87 5 77 8.93e-32 116
Msa0844510 MtrunA17_Chr8g0341041 35.455 220 79 4 223 442 2 158 1.67e-30 115
Msa0844510 MtrunA17_Chr3g0116821 28.668 443 256 16 10 436 86 484 1.05e-29 120
Msa0844510 MtrunA17_Chr1g0211481 67.089 79 26 0 15 93 4 82 7.49e-29 109
Msa0844510 MtrunA17_Chr2g0287231 30.992 242 133 8 17 254 16 227 4.01e-26 105
Msa0844510 MtrunA17_Chr1g0200101 64.062 64 23 0 183 246 50 113 1.71e-20 86.7
Msa0844510 MtrunA17_Chr1g0200101 57.143 49 21 0 31 79 2 50 2.07e-11 60.8
Msa0844510 MtrunA17_Chr7g0261801 54.545 66 27 1 165 230 1 63 1.06e-14 69.3
Msa0844510 MtrunA17_Chr3g0130991 26.182 275 142 8 19 283 85 308 2.62e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844510 AT1G07920.1 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT1G07940.4 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT1G07940.1 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT1G07940.2 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT1G07940.3 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT5G60390.3 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT5G60390.1 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT5G60390.2 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT1G07930.1 72.517 433 119 0 13 445 3 435 0.0 646
Msa0844510 AT1G07930.2 74.308 253 65 0 13 265 3 255 2.25e-134 392
Msa0844510 AT1G07930.2 71.429 105 30 0 341 445 254 358 4.80e-46 164
Msa0844510 AT5G10630.1 35.045 448 262 10 1 436 230 660 4.07e-81 264
Msa0844510 AT5G10630.5 35.045 448 262 10 1 436 231 661 4.15e-81 264
Msa0844510 AT5G10630.2 35.045 448 262 10 1 436 231 661 4.15e-81 264
Msa0844510 AT5G10630.4 35.147 441 271 8 1 436 306 736 2.34e-80 264
Msa0844510 AT5G10630.3 35.045 448 262 10 1 436 301 731 2.62e-80 263
Msa0844510 AT1G18070.1 32.265 437 288 5 3 434 87 520 3.45e-79 255
Msa0844510 AT1G18070.2 32.265 437 288 5 3 434 87 520 3.45e-79 255
Msa0844510 AT1G18070.3 31.991 447 287 6 3 434 87 531 1.61e-76 249
Msa0844510 AT1G35550.1 64.000 100 36 0 346 445 2 101 1.43e-39 138
Msa0844510 AT4G20360.1 30.068 439 255 14 10 436 73 471 2.35e-32 128
Msa0844510 AT4G20360.2 30.068 439 255 14 10 436 73 471 2.35e-32 128
Msa0844510 AT4G02930.1 27.460 437 254 17 13 436 63 449 2.32e-31 125

Find 155 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCTTTCTTCAAGAATT+TGG 0.057481 5_4:+22989641 None:intergenic
CTTCACCTTGCCGGCCATTT+GGG 0.153704 5_4:+22989970 None:intergenic
CATATTAACATTGTGGTTAT+TGG 0.173948 5_4:-22990845 Msa0844510:CDS
TTCACGGATCTGACCATTAT+TGG 0.182143 5_4:+22990481 None:intergenic
TCCAATACTTTGTTTGTATC+AGG 0.222457 5_4:-22985534 Msa0844510:three_prime_UTR
ACTTCACCTTGCCGGCCATT+TGG 0.225131 5_4:+22989969 None:intergenic
CACATTTATATTCTGCATAT+TGG 0.230059 5_4:+22985563 None:intergenic
GATTCCACTCATGCTGGTTT+TGG 0.235449 5_4:-22990515 Msa0844510:CDS
AAATATTCAATGTAGATAAA+TGG 0.239743 5_4:+22985434 None:intergenic
AGCCCTCTACTAAACATATT+TGG 0.293112 5_4:-22990169 Msa0844510:CDS
AAGTTAATGGCCTCCTTGGC+TGG 0.293396 5_4:+22989816 None:intergenic
AACTTGAGATGTAAAGTTAA+TGG 0.317903 5_4:+22989803 None:intergenic
TCACCTTTCTTCAAGAATTT+GGG 0.321325 5_4:+22989642 None:intergenic
TTCATTAAGAACATGATTAC+TGG 0.322781 5_4:-22990572 Msa0844510:CDS
GCCTCTCCGATTACCACTTC+AGG 0.334259 5_4:-22990081 Msa0844510:CDS
GATCTTTCCGAGGCCCTTCC+TGG 0.340987 5_4:-22989921 Msa0844510:CDS
TAGTTCTATCCGGTCACTTC+TGG 0.343578 5_4:-22985643 Msa0844510:three_prime_UTR
CTGGTAGAGGAAGCAGAGTT+TGG 0.347176 5_4:-22985624 Msa0844510:three_prime_UTR
GTCTACAAGATTGGAGGAAT+TGG 0.348403 5_4:-22990056 Msa0844510:CDS
GGAGCCGGTATTTCCAATAA+TGG 0.356707 5_4:-22990494 Msa0844510:CDS
GCTCTCCTTGCTTACTCTCT+TGG 0.359046 5_4:-22990455 Msa0844510:CDS
TCAGATGGCAAAATCAATAA+AGG 0.380105 5_4:-22986228 Msa0844510:three_prime_UTR
GCCTCTTAGGCTCTTTGATT+CGG 0.381289 5_4:+22990114 None:intergenic
CTCCTTGGCTGGGTGATGCT+TGG 0.382356 5_4:+22989827 None:intergenic
ATTACATTTATTCCCATCTC+TGG 0.383168 5_4:-22990215 Msa0844510:CDS
TTCTTCATACCTACGCTTGA+AGG 0.390441 5_4:+22990292 None:intergenic
GTGTATAACCCTTATCGATT+TGG 0.393370 5_4:+22989760 None:intergenic
ATCATATTTATCGACTTTGA+TGG 0.397321 5_4:-22986296 Msa0844510:three_prime_UTR
AAGCGCCAAACTGTGGCTAT+TGG 0.400384 5_4:-22989528 Msa0844510:CDS
GGTCATTTGTTCTACAAGCT+TGG 0.401050 5_4:-22990791 Msa0844510:CDS
CAGACGTCACTTCACCTTGC+CGG 0.402085 5_4:+22989961 None:intergenic
ATACCTACGCTTGAAGGAAA+AGG 0.403847 5_4:+22990298 None:intergenic
CTTAATGAAATCCCTGTGTC+CGG 0.429384 5_4:+22990586 None:intergenic
GGAATCTGATACTGCGCATA+TGG 0.430913 5_4:-22986165 Msa0844510:three_prime_UTR
CTCTACCACCATGGGCTTGG+TGG 0.436857 5_4:+22989596 None:intergenic
AGCTTCTTGCCAAGGTAGAC+AGG 0.437759 5_4:-22989692 Msa0844510:CDS
TCTTGACAGATGGATGCCTT+TGG 0.440301 5_4:-22990323 Msa0844510:intron
AGGCATTTCAAAGATGGAAA+TGG 0.444529 5_4:-22990768 Msa0844510:CDS
CTGTGGCTGTAGGATGTGTT+AGG 0.449006 5_4:-22990031 Msa0844510:CDS
TACCTACGCTTGAAGGAAAA+GGG 0.449319 5_4:+22990299 None:intergenic
TGATTCCAATAGCCACAGTT+TGG 0.449414 5_4:+22989523 None:intergenic
GCTTGGAGGCATTTCAAAGA+TGG 0.452315 5_4:-22990774 Msa0844510:CDS
CTTCAGGGTGTCTACAAGAT+TGG 0.458119 5_4:-22990065 Msa0844510:CDS
AGTCTCTACCACCATGGGCT+TGG 0.461264 5_4:+22989593 None:intergenic
CACCCTGGCCAAATCGATAA+GGG 0.461691 5_4:-22989768 Msa0844510:CDS
TAACCCTTATCGATTTGGCC+AGG 0.461808 5_4:+22989765 None:intergenic
TGTAAAGTTAATGGCCTCCT+TGG 0.462359 5_4:+22989812 None:intergenic
ATCGGAGAAGTTTACCTTGA+AGG 0.465772 5_4:+22991433 None:intergenic
ACCGAATCAAAGAGCCTAAG+AGG 0.467194 5_4:-22990115 Msa0844510:CDS
TCACCCTGGCCAAATCGATA+AGG 0.468275 5_4:-22989769 Msa0844510:CDS
ATCGTTGATTCCACTCATGC+TGG 0.468387 5_4:-22990521 Msa0844510:CDS
TTAATGAAATCCCTGTGTCC+GGG 0.473933 5_4:+22990587 None:intergenic
GATGATAGTGCAGCGGTACT+TGG 0.476978 5_4:+22990616 None:intergenic
AGACACCCTGAAGTGGTAAT+CGG 0.478400 5_4:+22990075 None:intergenic
CTGACCATTATTGGAAATAC+CGG 0.479403 5_4:+22990490 None:intergenic
TCATATTTATCGACTTTGAT+GGG 0.483478 5_4:-22986295 Msa0844510:three_prime_UTR
TCTGGGAAGTCAACCACTGC+TGG 0.494688 5_4:-22990812 Msa0844510:CDS
TAAGAAGAGCACAATCAGCT+TGG 0.494803 5_4:+22990543 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 5_4:+22990202 None:intergenic
GCCTGATACAAACAAAGTAT+TGG 0.496631 5_4:+22985533 None:intergenic
TTCACCTTGCCGGCCATTTG+GGG 0.498321 5_4:+22989971 None:intergenic
GTTATTGGTCATGTCAACTC+TGG 0.498667 5_4:-22990830 Msa0844510:CDS
CCTCTCCGATTACCACTTCA+GGG 0.501098 5_4:-22990080 Msa0844510:CDS
CATTTGTTCTACAAGCTTGG+AGG 0.502015 5_4:-22990788 Msa0844510:CDS
GGCTTGTCTGATAGCCTCTT+AGG 0.504279 5_4:+22990101 None:intergenic
TACCAAATATGTTTAGTAGA+GGG 0.505176 5_4:+22990167 None:intergenic
TTTCAACGCAGCGTCCTTCA+AGG 0.511399 5_4:-22991447 Msa0844510:intron
TGTGGCTATTGGAATCATCT+TGG 0.511608 5_4:-22989517 Msa0844510:CDS
GAGGTGTGGCAGTTAAGAAC+AGG 0.514241 5_4:+22989738 None:intergenic
TCATTAAGAACATGATTACT+GGG 0.515556 5_4:-22990571 Msa0844510:CDS
ATTATCACCAGGAAGGGCCT+CGG 0.515616 5_4:+22989914 None:intergenic
AAGAAGAGCACAATCAGCTT+GGG 0.517444 5_4:+22990544 None:intergenic
GGGCCTCGGAAAGATCTTCA+TGG 0.519805 5_4:+22989928 None:intergenic
AGGAGTAATGGATAAAGAAG+AGG 0.522331 5_4:-22990900 Msa0844510:exon
TGGGTGATGCTTGGAGTTTG+AGG 0.523276 5_4:+22989836 None:intergenic
AAGAAGGATCCTAGTGAAAG+AGG 0.523311 5_4:-22989486 Msa0844510:CDS
CTCAAGGCTGAGCGCGAAAG+AGG 0.530816 5_4:-22990677 Msa0844510:CDS
GAGCCCAAATTCTTGAAGAA+AGG 0.535406 5_4:-22989645 Msa0844510:CDS
TATCCGGTCACTTCTGGTAG+AGG 0.536472 5_4:-22985637 Msa0844510:three_prime_UTR
AAAGGTTCATATTAACATTG+TGG 0.540926 5_4:-22990852 Msa0844510:CDS
AGAGCAATATGCAAGTTTGA+CGG 0.540983 5_4:+22989400 None:intergenic
GTTTGCTAAGCTTCTTGCCA+AGG 0.542241 5_4:-22989700 Msa0844510:CDS
TTCGGTTAAGAGCTTCAAGA+AGG 0.544122 5_4:+22990132 None:intergenic
CAGGGTGTCTACAAGATTGG+AGG 0.544955 5_4:-22990062 Msa0844510:CDS
GCTTATCTCTGACAATAAAA+CGG 0.545000 5_4:+22989547 None:intergenic
GTACCAAATATGTTTAGTAG+AGG 0.546352 5_4:+22990166 None:intergenic
TGAAGTGACGTCTGTGAAGA+TGG 0.546605 5_4:-22989952 Msa0844510:CDS
TTCTGGCAAGATAATTGAGA+AGG 0.546615 5_4:-22989667 Msa0844510:CDS
AAAATCAATAAAGGAACTCA+AGG 0.547735 5_4:-22986219 Msa0844510:three_prime_UTR
GCCAGAAAACCTGTCTACCT+TGG 0.552541 5_4:+22989683 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.554818 5_4:+22990465 None:intergenic
AGTTAATGGCCTCCTTGGCT+GGG 0.557127 5_4:+22989817 None:intergenic
ACAATAAAACGGCCGAGTGA+AGG 0.559487 5_4:+22989558 None:intergenic
GTGATCTTACCTCTTTCACT+AGG 0.560172 5_4:+22989477 None:intergenic
TAACTGCCACACCTCCTACA+TGG 0.561771 5_4:-22989730 Msa0844510:CDS
TGCACTATCATCGATGCCCC+CGG 0.562583 5_4:-22990605 Msa0844510:CDS
TCTACCACCATGGGCTTGGT+GGG 0.562629 5_4:+22989597 None:intergenic
GTTAAGAGCTTCAAGAAGGG+TGG 0.567132 5_4:+22990136 None:intergenic
TTTGCCCCAAATGGCCGGCA+AGG 0.570061 5_4:-22989975 Msa0844510:CDS
TAATGAAATCCCTGTGTCCG+GGG 0.570266 5_4:+22990588 None:intergenic
TTATTGCGGTTAAAATCAGA+TGG 0.571103 5_4:-22986243 Msa0844510:three_prime_UTR
TTTGTTTGTATCAGGCATAG+TGG 0.575023 5_4:-22985526 Msa0844510:three_prime_UTR
GGCTCCAAAACCAGCATGAG+TGG 0.575911 5_4:+22990511 None:intergenic
TCTCCCTCAAAACCAGAGAT+GGG 0.577908 5_4:+22990203 None:intergenic
GCGGACAGAATAGTTCTATC+CGG 0.579876 5_4:-22985653 Msa0844510:three_prime_UTR
GCTGTAGGATGTGTTAGGAC+TGG 0.580546 5_4:-22990026 Msa0844510:CDS
AACCCTTATCGATTTGGCCA+GGG 0.581496 5_4:+22989766 None:intergenic
AGGATTCATTCAAGTATGCG+TGG 0.581569 5_4:-22990712 Msa0844510:CDS
ATCTCACATTATCACCAGGA+AGG 0.588267 5_4:+22989907 None:intergenic
TGACACCAAGAGAGTAAGCA+AGG 0.593570 5_4:+22990450 None:intergenic
CTCCAAGCATCACCCAGCCA+AGG 0.596291 5_4:-22989829 Msa0844510:CDS
TTATTGGTCATGTCAACTCT+GGG 0.598528 5_4:-22990829 Msa0844510:CDS
TGATACTGCGCATATGGAGT+TGG 0.599607 5_4:-22986159 Msa0844510:three_prime_UTR
GGATTCATTCAAGTATGCGT+GGG 0.601005 5_4:-22990711 Msa0844510:CDS
CTTCCTCTACCAGAAGTGAC+CGG 0.601256 5_4:+22985634 None:intergenic
GATGATTCCCACCAAGCCCA+TGG 0.606444 5_4:-22989604 Msa0844510:CDS
ACTAAACATATTTGGTACAA+AGG 0.606611 5_4:-22990161 Msa0844510:CDS
CATCTTGGTTGTGAACAAGA+AGG 0.610153 5_4:-22989502 Msa0844510:CDS
AAATTCTTGAAGAAAGGTGA+TGG 0.611109 5_4:-22989639 Msa0844510:CDS
AGCAAACTTGACAGCCATGT+AGG 0.611166 5_4:+22989716 None:intergenic
TCTCACATTATCACCAGGAA+GGG 0.614448 5_4:+22989908 None:intergenic
AGTTTGAGGCAACATAGCCT+CGG 0.617398 5_4:+22989850 None:intergenic
TTCTTGAAGAAAGGTGATGG+TGG 0.618680 5_4:-22989636 Msa0844510:CDS
CTTGAAGGAAAAGGGGCCAA+AGG 0.620399 5_4:+22990307 None:intergenic
GTGGGTTCTTGACAAACTCA+AGG 0.622484 5_4:-22990693 Msa0844510:CDS
ATCCTTGAAGAGAAAATCAG+AGG 0.623378 5_4:-22986186 Msa0844510:three_prime_UTR
CAGAGATAAGCGCCAAACTG+TGG 0.624813 5_4:-22989535 Msa0844510:CDS
TTAAGAGCTTCAAGAAGGGT+GGG 0.626591 5_4:+22990137 None:intergenic
TCGGTTAAGAGCTTCAAGAA+GGG 0.627314 5_4:+22990133 None:intergenic
TGACAGCCATGTAGGAGGTG+TGG 0.628993 5_4:+22989724 None:intergenic
ATCAATAAAGGAACTCAAGG+AGG 0.630797 5_4:-22986216 Msa0844510:three_prime_UTR
CAAGCATCACCCAGCCAAGG+AGG 0.631735 5_4:-22989826 Msa0844510:CDS
TGGTGTCTTGAAACGTGGAA+TGG 0.639337 5_4:-22990006 Msa0844510:CDS
ATCTTGTAGACACCCTGAAG+TGG 0.645867 5_4:+22990068 None:intergenic
AATGATCTGCTGCTGCAACA+AGG 0.646976 5_4:-22990423 Msa0844510:intron
TAAAGCTGCTGAGTTAAACA+AGG 0.647648 5_4:-22990732 Msa0844510:CDS
GCAAATCTCACATTATCACC+AGG 0.648840 5_4:+22989903 None:intergenic
GGAATTGGAACTGTGGCTGT+AGG 0.649538 5_4:-22990041 Msa0844510:CDS
AAACTTGACAGCCATGTAGG+AGG 0.651510 5_4:+22989719 None:intergenic
CCCTGAAGTGGTAATCGGAG+AGG 0.655678 5_4:+22990080 None:intergenic
GTTATCATCACGAATCACCC+TGG 0.655789 5_4:-22989783 Msa0844510:CDS
ACCTACGCTTGAAGGAAAAG+GGG 0.656499 5_4:+22990300 None:intergenic
AATGAAATCCCTGTGTCCGG+GGG 0.661737 5_4:+22990589 None:intergenic
TCTGATGCACATCTCAGCCG+AGG 0.666582 5_4:-22989867 Msa0844510:CDS
GGATAGAACTATTCTGTCCG+CGG 0.666727 5_4:+22985655 None:intergenic
GTAGAACAAATGACCAGCAG+TGG 0.675239 5_4:+22990799 None:intergenic
GCATATGGAGTTGGTTGATG+AGG 0.677464 5_4:-22986150 Msa0844510:intron
TGTCTTGAAACGTGGAATGG+TGG 0.682801 5_4:-22990003 Msa0844510:CDS
GGACCATGAAGATCTTTCCG+AGG 0.688586 5_4:-22989931 Msa0844510:CDS
TTAAGTCCACATTGAAAACG+CGG 0.694876 5_4:-22989454 Msa0844510:exon
CTGAGAGCTTGAAGAAACCG+CGG 0.697011 5_4:-22985672 Msa0844510:three_prime_UTR
GATTGGAGGAATTGGAACTG+TGG 0.703844 5_4:-22990048 Msa0844510:CDS
AGGACTGGTGTCTTGAAACG+TGG 0.714083 5_4:-22990011 Msa0844510:CDS
GGGCATCGATGATAGTGCAG+CGG 0.718267 5_4:+22990609 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.724767 5_4:-22989601 Msa0844510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTGACTAAATAATTAA+TGG - chr5_4:22988510-22988529 Msa0844510:intron 10.0%
!!! ATTTTGACTAAATAATTAAT+GGG - chr5_4:22988511-22988530 Msa0844510:intron 10.0%
!!! TATTTTTACTTGTATTAATT+TGG - chr5_4:22988875-22988894 Msa0844510:intron 10.0%
!!! ATTTTTACTTGTATTAATTT+GGG - chr5_4:22988876-22988895 Msa0844510:intron 10.0%
!! AAGTTAATTAAAAACTAAAA+AGG + chr5_4:22989596-22989615 None:intergenic 10.0%
!! AAATAAATAAGGAAATTAAT+TGG - chr5_4:22991059-22991078 Msa0844510:intron 10.0%
!! AATAAATAAGGAAATTAATT+GGG - chr5_4:22991060-22991079 Msa0844510:intron 10.0%
!!! TTTTTATGATTTCAAGTTTT+AGG - chr5_4:22986021-22986040 Msa0844510:intron 15.0%
!!! TAGTTTTCAAAAAAAAGAAA+AGG - chr5_4:22986071-22986090 Msa0844510:intron 15.0%
!! AATCAAAATATATAAGCATT+TGG + chr5_4:22987643-22987662 None:intergenic 15.0%
!!! TATATTTTGATTTGCTAATT+AGG - chr5_4:22987651-22987670 Msa0844510:intron 15.0%
!!! TATATGTTAATTTGTGAATT+TGG + chr5_4:22988107-22988126 None:intergenic 15.0%
!!! AAGAAAGATAAAATATTTTG+AGG + chr5_4:22989198-22989217 None:intergenic 15.0%
!! CAAAAAAAAATTAAGAAAAG+TGG + chr5_4:22989746-22989765 None:intergenic 15.0%
!!! CTTAATTTTTTTTTGCATAT+AGG - chr5_4:22989751-22989770 Msa0844510:CDS 15.0%
!! AAAATAAAATGAATAAGAAG+CGG + chr5_4:22990215-22990234 None:intergenic 15.0%
!!! AGGTAAACAATTTTTTTAAA+TGG - chr5_4:22990353-22990372 Msa0844510:intron 15.0%
!! ATTAAGCTCATAAATAAATA+AGG - chr5_4:22991048-22991067 Msa0844510:intron 15.0%
!! AAATATTCAATGTAGATAAA+TGG + chr5_4:22991510-22991529 None:intergenic 15.0%
!!! ATTCGTTTATGATTTTGAAT+TGG - chr5_4:22985689-22985708 Msa0844510:intron 20.0%
!!! GTAGTTTTTATTTGTTATGA+TGG - chr5_4:22985711-22985730 Msa0844510:intron 20.0%
!! AAAAAAAAACACAAACGATA+TGG + chr5_4:22985754-22985773 None:intergenic 20.0%
!! GTTCAAAATATATAAGCATT+TGG + chr5_4:22987706-22987725 None:intergenic 20.0%
!! AATCTATTCCTACATATTAA+AGG - chr5_4:22987730-22987749 Msa0844510:intron 20.0%
!!! CATATTTCTAATCCAATTAT+TGG - chr5_4:22987818-22987837 Msa0844510:intron 20.0%
!! AATCAGTGTTAATTAATGTT+AGG - chr5_4:22987854-22987873 Msa0844510:intron 20.0%
!! GATACATTTAATAGTATAAG+AGG + chr5_4:22987974-22987993 None:intergenic 20.0%
!! TGATAAAACAACGTATTAAA+AGG - chr5_4:22988350-22988369 Msa0844510:intron 20.0%
!! TTGTACCAAAAAAAAAAAAG+AGG - chr5_4:22988577-22988596 Msa0844510:intron 20.0%
!!! TTGTTATTAGAAATACTGTT+TGG - chr5_4:22988929-22988948 Msa0844510:intron 20.0%
!! TGTTATTAGAAATACTGTTT+GGG - chr5_4:22988930-22988949 Msa0844510:intron 20.0%
!! TATAAACTAAACATGAGAAA+TGG + chr5_4:22989289-22989308 None:intergenic 20.0%
!! AAATCAAGATATAGTTAACT+AGG + chr5_4:22989470-22989489 None:intergenic 20.0%
!!! TTCTTGTTGATTTATTATGA+AGG - chr5_4:22989858-22989877 Msa0844510:CDS 20.0%
!!! TTGATTTATTATGAAGGTTT+TGG - chr5_4:22989864-22989883 Msa0844510:CDS 20.0%
!!! TTTAAATGGATTCAAATTCT+TGG - chr5_4:22990367-22990386 Msa0844510:intron 20.0%
!! GTGCATATAATATCTATTAA+TGG - chr5_4:22990408-22990427 Msa0844510:intron 20.0%
!!! ATCTTACTTTTTGATTATTG+CGG - chr5_4:22990684-22990703 Msa0844510:CDS 20.0%
!!! AGGTTTTTTTTGCACAATTT+AGG - chr5_4:22985577-22985596 Msa0844510:three_prime_UTR 25.0%
!!! GGTTTTTTTTGCACAATTTA+GGG - chr5_4:22985578-22985597 Msa0844510:three_prime_UTR 25.0%
! TATTTGATGCGTAATTGAAA+AGG - chr5_4:22985798-22985817 Msa0844510:intron 25.0%
!!! TTACTGTACATGTTTGTTTT+CGG - chr5_4:22985828-22985847 Msa0844510:intron 25.0%
! GTAGTATAAACTCAATTTCA+TGG - chr5_4:22985860-22985879 Msa0844510:intron 25.0%
! CTCAGTATTCAACAATAAAA+TGG + chr5_4:22985955-22985974 None:intergenic 25.0%
!!! ATTTCAAGTTTTAGGAGTAA+TGG - chr5_4:22986029-22986048 Msa0844510:intron 25.0%
! AAAGGTTCATATTAACATTG+TGG - chr5_4:22986089-22986108 Msa0844510:intron 25.0%
! CATATTAACATTGTGGTTAT+TGG - chr5_4:22986096-22986115 Msa0844510:intron 25.0%
! TTCATTAAGAACATGATTAC+TGG - chr5_4:22986369-22986388 Msa0844510:intron 25.0%
! TCATTAAGAACATGATTACT+GGG - chr5_4:22986370-22986389 Msa0844510:intron 25.0%
! TTATTATCTATCTTGACAGA+TGG - chr5_4:22986608-22986627 Msa0844510:intron 25.0%
!!! TCATCAATTTTGATGAACAT+TGG - chr5_4:22986687-22986706 Msa0844510:intron 25.0%
! TACCAAATATGTTTAGTAGA+GGG + chr5_4:22986777-22986796 None:intergenic 25.0%
! ACTAAACATATTTGGTACAA+AGG - chr5_4:22986780-22986799 Msa0844510:intron 25.0%
! AACTTGAGATGTAAAGTTAA+TGG + chr5_4:22987141-22987160 None:intergenic 25.0%
! AAATGTAAAGTTTAGGCATT+TGG + chr5_4:22987581-22987600 None:intergenic 25.0%
! AATGAGCAAATGTAAAGTTT+AGG + chr5_4:22987588-22987607 None:intergenic 25.0%
! AAACTTTACATTTGCTCATT+AGG - chr5_4:22987588-22987607 Msa0844510:intron 25.0%
! TATGTGTTCCTTTAATATGT+AGG + chr5_4:22987741-22987760 None:intergenic 25.0%
! GAAGTATGAAATCCAATAAT+TGG + chr5_4:22987833-22987852 None:intergenic 25.0%
! GGTATCTTCTTAATTCTAAT+GGG - chr5_4:22987914-22987933 Msa0844510:intron 25.0%
!!! AAAAGTTATTTTTCCAAGCA+AGG - chr5_4:22987995-22988014 Msa0844510:intron 25.0%
!!! TGTTAATTTGTGAATTTGGT+AGG + chr5_4:22988103-22988122 None:intergenic 25.0%
! TATATGCATAAAAACTCATG+TGG - chr5_4:22988125-22988144 Msa0844510:intron 25.0%
!!! TTGTGCCTCTTTTTTTTTTT+TGG + chr5_4:22988585-22988604 None:intergenic 25.0%
!! ATCTTTGTAGACACATTTTA+TGG - chr5_4:22988963-22988982 Msa0844510:intron 25.0%
! TTTATGGATTCTTGAATATC+TGG - chr5_4:22988979-22988998 Msa0844510:intron 25.0%
!!! ATAAGCTTGATTTACTTTTC+AGG - chr5_4:22989072-22989091 Msa0844510:intron 25.0%
! GATAGGAAATAACTAATAAG+GGG + chr5_4:22989425-22989444 None:intergenic 25.0%
! GGATAGGAAATAACTAATAA+GGG + chr5_4:22989426-22989445 None:intergenic 25.0%
! AGGATAGGAAATAACTAATA+AGG + chr5_4:22989427-22989446 None:intergenic 25.0%
! AAGATATAGTTAACTAGGAA+GGG + chr5_4:22989465-22989484 None:intergenic 25.0%
! TGTTTAAACTACCAAAGATT+TGG - chr5_4:22989523-22989542 Msa0844510:CDS 25.0%
! GTTCAGTTAAAAAAATTCAC+CGG + chr5_4:22989675-22989694 None:intergenic 25.0%
!! ATGATTAACTGACGAATTTT+TGG - chr5_4:22989709-22989728 Msa0844510:CDS 25.0%
!!! ACGAATTTTTGGCAATATAT+AGG - chr5_4:22989720-22989739 Msa0844510:CDS 25.0%
! AGAAAAACTTAAATGCAACA+AGG + chr5_4:22990109-22990128 None:intergenic 25.0%
!! ATTCATGCTTCATTATTTTC+AGG - chr5_4:22990273-22990292 Msa0844510:CDS 25.0%
! ATATACATTGAATTTCAGCA+AGG - chr5_4:22990519-22990538 Msa0844510:CDS 25.0%
!!! ATCATATTTATCGACTTTGA+TGG - chr5_4:22990645-22990664 Msa0844510:CDS 25.0%
!!! TCATATTTATCGACTTTGAT+GGG - chr5_4:22990646-22990665 Msa0844510:CDS 25.0%
! AAAATCAATAAAGGAACTCA+AGG - chr5_4:22990722-22990741 Msa0844510:CDS 25.0%
! CACATTTATATTCTGCATAT+TGG + chr5_4:22991381-22991400 None:intergenic 25.0%
TGCAAAAAAAACCTACGAAT+CGG + chr5_4:22985571-22985590 None:intergenic 30.0%
! GATCATTAGATGATAATGTG+TGG - chr5_4:22985620-22985639 Msa0844510:three_prime_UTR 30.0%
!!! CTTTGTTTTCTGTGTTGAAT+TGG - chr5_4:22985992-22986011 Msa0844510:intron 30.0%
ATTACATTTATTCCCATCTC+TGG - chr5_4:22986726-22986745 Msa0844510:intron 30.0%
GTACCAAATATGTTTAGTAG+AGG + chr5_4:22986778-22986797 None:intergenic 30.0%
TCACCTTTCTTCAAGAATTT+GGG + chr5_4:22987302-22987321 None:intergenic 30.0%
ATCACCTTTCTTCAAGAATT+TGG + chr5_4:22987303-22987322 None:intergenic 30.0%
AAATTCTTGAAGAAAGGTGA+TGG - chr5_4:22987302-22987321 Msa0844510:intron 30.0%
! TTTTCTGAATATCCTTCACT+CGG - chr5_4:22987371-22987390 Msa0844510:intron 30.0%
GCTTATCTCTGACAATAAAA+CGG + chr5_4:22987397-22987416 None:intergenic 30.0%
AAGCTAACGGTTGAAAATTT+GGG + chr5_4:22987618-22987637 None:intergenic 30.0%
AAAGCTAACGGTTGAAAATT+TGG + chr5_4:22987619-22987638 None:intergenic 30.0%
AAGCTAACGGTTGAAAATTT+GGG + chr5_4:22987618-22987637 None:intergenic 30.0%
AAAGCTAACGGTTGAAAATT+TGG + chr5_4:22987619-22987638 None:intergenic 30.0%
TTTGTAATTGAGCACTTGAA+CGG - chr5_4:22987893-22987912 Msa0844510:intron 30.0%
CGGTATCTTCTTAATTCTAA+TGG - chr5_4:22987913-22987932 Msa0844510:intron 30.0%
TGGTAAGTTTCCTCAAATTA+TGG - chr5_4:22988414-22988433 Msa0844510:intron 30.0%
GGTAAGTTTCCTCAAATTAT+GGG - chr5_4:22988415-22988434 Msa0844510:intron 30.0%
ATCAATACTCCCATAATTTG+AGG + chr5_4:22988427-22988446 None:intergenic 30.0%
TTTCCACAATTATTGCTTAG+TGG - chr5_4:22988450-22988469 Msa0844510:intron 30.0%
TTCCACAATTATTGCTTAGT+GGG - chr5_4:22988451-22988470 Msa0844510:intron 30.0%
!! TTATTGCTTAGTGGGTTTAT+TGG - chr5_4:22988459-22988478 Msa0844510:intron 30.0%
!! TATTGCTTAGTGGGTTTATT+GGG - chr5_4:22988460-22988479 Msa0844510:intron 30.0%
TTAATGAAACGAATCGTTTC+AGG - chr5_4:22988535-22988554 Msa0844510:intron 30.0%
TAATGAAACGAATCGTTTCA+GGG - chr5_4:22988536-22988555 Msa0844510:intron 30.0%
ACAATGTTTAGATGATCACT+TGG + chr5_4:22988839-22988858 None:intergenic 30.0%
! TACTTGTATTAATTTGGGCT+AGG - chr5_4:22988881-22988900 Msa0844510:intron 30.0%
AGAAATACTGTTTGGGAAAA+TGG - chr5_4:22988937-22988956 Msa0844510:intron 30.0%
!! TACCTCTAAAACTGATTATG+TGG - chr5_4:22989145-22989164 Msa0844510:intron 30.0%
!! TACCACATAATCAGTTTTAG+AGG + chr5_4:22989150-22989169 None:intergenic 30.0%
TCGTTAGAATCTAGATACAA+AGG + chr5_4:22989249-22989268 None:intergenic 30.0%
TTGTATCTAGATTCTAACGA+AGG - chr5_4:22989249-22989268 Msa0844510:intron 30.0%
TGTATCTAGATTCTAACGAA+GGG - chr5_4:22989250-22989269 Msa0844510:intron 30.0%
!! TTAAGCATTTCACTTTTGCA+CGG + chr5_4:22989366-22989385 None:intergenic 30.0%
CAAGATATAGTTAACTAGGA+AGG + chr5_4:22989466-22989485 None:intergenic 30.0%
! TACCAAAGATTTGGAATGAA+GGG - chr5_4:22989532-22989551 Msa0844510:CDS 30.0%
AGTTAAAAAAATTCACCGGT+GGG + chr5_4:22989671-22989690 None:intergenic 30.0%
TTTAACTGAACAGATGAACT+TGG - chr5_4:22989684-22989703 Msa0844510:CDS 30.0%
! ATTTTCCAGAGCAAATTAAG+TGG + chr5_4:22989777-22989796 None:intergenic 30.0%
!!! TTTGCTCTGGAAAATCTTTT+TGG - chr5_4:22989782-22989801 Msa0844510:CDS 30.0%
!!! TTGCTCTGGAAAATCTTTTT+GGG - chr5_4:22989783-22989802 Msa0844510:CDS 30.0%
ACACAATGACATGAAATTTG+TGG + chr5_4:22989892-22989911 None:intergenic 30.0%
CATCAAAAATCCAGGAAAAA+AGG + chr5_4:22990025-22990044 None:intergenic 30.0%
TCACATTCAAGTGATAAAAG+AGG + chr5_4:22990172-22990191 None:intergenic 30.0%
CATGCAAAAATGTAACTACT+GGG - chr5_4:22990299-22990318 Msa0844510:CDS 30.0%
ATGCAAAAATGTAACTACTG+GGG - chr5_4:22990300-22990319 Msa0844510:CDS 30.0%
AATTAAGCTAGAGATTGAGA+AGG - chr5_4:22990572-22990591 Msa0844510:CDS 30.0%
TTATTGCGGTTAAAATCAGA+TGG - chr5_4:22990698-22990717 Msa0844510:CDS 30.0%
TCAGATGGCAAAATCAATAA+AGG - chr5_4:22990713-22990732 Msa0844510:CDS 30.0%
! GTTTAAAACTTCTTACACTG+CGG - chr5_4:22991016-22991035 Msa0844510:intron 30.0%
AATGAGACGGAATTATGTTA+AGG + chr5_4:22991193-22991212 None:intergenic 30.0%
ATTATGCTCCTTTCTAAACA+TGG - chr5_4:22991210-22991229 Msa0844510:intron 30.0%
TTATGCTCCTTTCTAAACAT+GGG - chr5_4:22991211-22991230 Msa0844510:intron 30.0%
!!! TTGTGTCTTATTGTTTTAGC+AGG - chr5_4:22991246-22991265 Msa0844510:intron 30.0%
! TCCAATACTTTGTTTGTATC+AGG - chr5_4:22991407-22991426 Msa0844510:intron 30.0%
! TGCAATTTTCGCTAATACAA+AGG + chr5_4:22991445-22991464 None:intergenic 30.0%
!! CTACCATTTTTCTCTTCGTT+CGG - chr5_4:22985465-22985484 Msa0844510:three_prime_UTR 35.0%
TAACCGAACGAAGAGAAAAA+TGG + chr5_4:22985471-22985490 None:intergenic 35.0%
! ATTTTTCTCTTCGTTCGGTT+AGG - chr5_4:22985470-22985489 Msa0844510:three_prime_UTR 35.0%
! TTTTTCTCTTCGTTCGGTTA+GGG - chr5_4:22985471-22985490 Msa0844510:three_prime_UTR 35.0%
ACATCAGCTAGAAACGAAAT+CGG + chr5_4:22985529-22985548 None:intergenic 35.0%
!! AGGAGTAATGGATAAAGAAG+AGG - chr5_4:22986041-22986060 Msa0844510:intron 35.0%
TTATTGGTCATGTCAACTCT+GGG - chr5_4:22986112-22986131 Msa0844510:intron 35.0%
AGGCATTTCAAAGATGGAAA+TGG - chr5_4:22986173-22986192 Msa0844510:three_prime_UTR 35.0%
TAAAGCTGCTGAGTTAAACA+AGG - chr5_4:22986209-22986228 Msa0844510:three_prime_UTR 35.0%
CTGACCATTATTGGAAATAC+CGG + chr5_4:22986454-22986473 None:intergenic 35.0%
AGCCCTCTACTAAACATATT+TGG - chr5_4:22986772-22986791 Msa0844510:intron 35.0%
! GTGTATAACCCTTATCGATT+TGG + chr5_4:22987184-22987203 None:intergenic 35.0%
TTCTGGCAAGATAATTGAGA+AGG - chr5_4:22987274-22987293 Msa0844510:intron 35.0%
TTAAGTCCACATTGAAAACG+CGG - chr5_4:22987487-22987506 Msa0844510:intron 35.0%
AGAGCAATATGCAAGTTTGA+CGG + chr5_4:22987544-22987563 None:intergenic 35.0%
AGCTAACGGTTGAAAATTTG+GGG + chr5_4:22987617-22987636 None:intergenic 35.0%
TAAGCATTTGGCAAAGCTAA+CGG + chr5_4:22987631-22987650 None:intergenic 35.0%
AGCTAACGGTTGAAAATTTG+GGG + chr5_4:22987617-22987636 None:intergenic 35.0%
TAAGCATTTGGCAAAGCTAA+CGG + chr5_4:22987631-22987650 None:intergenic 35.0%
! AGTAACATGAAGGGTATGAT+TGG + chr5_4:22987787-22987806 None:intergenic 35.0%
AGTACTGCTAGTAACATGAA+GGG + chr5_4:22987796-22987815 None:intergenic 35.0%
! AAGTACTGCTAGTAACATGA+AGG + chr5_4:22987797-22987816 None:intergenic 35.0%
GTAGTCAAAATCGAGATCTT+AGG - chr5_4:22988017-22988036 Msa0844510:intron 35.0%
TAACGTAAGTGCTATGAATC+TGG - chr5_4:22988380-22988399 Msa0844510:intron 35.0%
AACGTAAGTGCTATGAATCT+GGG - chr5_4:22988381-22988400 Msa0844510:intron 35.0%
AACCCACTAAGCAATAATTG+TGG + chr5_4:22988456-22988475 None:intergenic 35.0%
!! AAAACGCGTTTTGATGAAAC+CGG - chr5_4:22988603-22988622 Msa0844510:intron 35.0%
! TTCCTTAAAATTCGGGTTTC+CGG + chr5_4:22988643-22988662 None:intergenic 35.0%
GGTTGTCTTCCTTAAAATTC+GGG + chr5_4:22988650-22988669 None:intergenic 35.0%
CGGTTGTCTTCCTTAAAATT+CGG + chr5_4:22988651-22988670 None:intergenic 35.0%
!! CGAATTTTAAGGAAGACAAC+CGG - chr5_4:22988649-22988668 Msa0844510:intron 35.0%
TAGATGATCACTTGGAAACA+TGG + chr5_4:22988831-22988850 None:intergenic 35.0%
! TTCCTTTCTTTTTGTGCTCT+TGG - chr5_4:22989041-22989060 Msa0844510:intron 35.0%
ACTAAACATGAGAAATGGAC+AGG + chr5_4:22989284-22989303 None:intergenic 35.0%
TATAGTTAACTAGGAAGGGA+GGG + chr5_4:22989461-22989480 None:intergenic 35.0%
ATATAGTTAACTAGGAAGGG+AGG + chr5_4:22989462-22989481 None:intergenic 35.0%
! CTACCAAAGATTTGGAATGA+AGG - chr5_4:22989531-22989550 Msa0844510:CDS 35.0%
CAAATATGCCAGGAAGATTT+CGG + chr5_4:22989569-22989588 None:intergenic 35.0%
AACTTTCCTAATCACCCAAA+AGG - chr5_4:22989611-22989630 Msa0844510:CDS 35.0%
TTCTTCTTGAGACACCTATT+TGG - chr5_4:22989635-22989654 Msa0844510:CDS 35.0%
CAGTTAAAAAAATTCACCGG+TGG + chr5_4:22989672-22989691 None:intergenic 35.0%
!! TTCTTGCTAGTCATTTTGTG+TGG - chr5_4:22989807-22989826 Msa0844510:CDS 35.0%
TCAACAAGAATTTCCCAAAG+AGG + chr5_4:22989848-22989867 None:intergenic 35.0%
! AAAGGTACAGTAGTGAGATT+AGG + chr5_4:22990007-22990026 None:intergenic 35.0%
! GATTTTTGATGTTCTGCTCA+CGG - chr5_4:22990034-22990053 Msa0844510:CDS 35.0%
GCATGCAAAAATGTAACTAC+TGG - chr5_4:22990298-22990317 Msa0844510:CDS 35.0%
TGCAAAAATGTAACTACTGG+GGG - chr5_4:22990301-22990320 Msa0844510:CDS 35.0%
TAAGGATAGGCTGAACTATT+TGG - chr5_4:22990327-22990346 Msa0844510:intron 35.0%
! ATGTGATTTGAAACGTAGTG+TGG - chr5_4:22990446-22990465 Msa0844510:CDS 35.0%
! TGTGATTTGAAACGTAGTGT+GGG - chr5_4:22990447-22990466 Msa0844510:CDS 35.0%
ATCAATAAAGGAACTCAAGG+AGG - chr5_4:22990725-22990744 Msa0844510:CDS 35.0%
ATCCTTGAAGAGAAAATCAG+AGG - chr5_4:22990755-22990774 Msa0844510:CDS 35.0%
! TTCCTCTGATTTTCTCTTCA+AGG + chr5_4:22990760-22990779 None:intergenic 35.0%
TTGGGCATAAATCAATGTGT+TGG - chr5_4:22991078-22991097 Msa0844510:intron 35.0%
TGGGCATAAATCAATGTGTT+GGG - chr5_4:22991079-22991098 Msa0844510:intron 35.0%
TGTGTTGGGCAGTATTATAT+AGG - chr5_4:22991093-22991112 Msa0844510:intron 35.0%
! TAGAAAGGAGCATAATGAGA+CGG + chr5_4:22991206-22991225 None:intergenic 35.0%
GCCTGATACAAACAAAGTAT+TGG + chr5_4:22991411-22991430 None:intergenic 35.0%
TTTGTTTGTATCAGGCATAG+TGG - chr5_4:22991415-22991434 Msa0844510:intron 35.0%
ATCGGAGAAGTTTACCTTGA+AGG + chr5_4:22985511-22985530 None:intergenic 40.0%
GTTATTGGTCATGTCAACTC+TGG - chr5_4:22986111-22986130 Msa0844510:intron 40.0%
GGTCATTTGTTCTACAAGCT+TGG - chr5_4:22986150-22986169 Msa0844510:intron 40.0%
CATTTGTTCTACAAGCTTGG+AGG - chr5_4:22986153-22986172 Msa0844510:three_prime_UTR 40.0%
AGGATTCATTCAAGTATGCG+TGG - chr5_4:22986229-22986248 Msa0844510:three_prime_UTR 40.0%
GGATTCATTCAAGTATGCGT+GGG - chr5_4:22986230-22986249 Msa0844510:three_prime_UTR 40.0%
TTAATGAAATCCCTGTGTCC+GGG + chr5_4:22986357-22986376 None:intergenic 40.0%
CTTAATGAAATCCCTGTGTC+CGG + chr5_4:22986358-22986377 None:intergenic 40.0%
! AAGAAGAGCACAATCAGCTT+GGG + chr5_4:22986400-22986419 None:intergenic 40.0%
! TAAGAAGAGCACAATCAGCT+TGG + chr5_4:22986401-22986420 None:intergenic 40.0%
TTCACGGATCTGACCATTAT+TGG + chr5_4:22986463-22986482 None:intergenic 40.0%
TACCTACGCTTGAAGGAAAA+GGG + chr5_4:22986645-22986664 None:intergenic 40.0%
ATACCTACGCTTGAAGGAAA+AGG + chr5_4:22986646-22986665 None:intergenic 40.0%
TTCTTCATACCTACGCTTGA+AGG + chr5_4:22986652-22986671 None:intergenic 40.0%
!!! TATTCCCATCTCTGGTTTTG+AGG - chr5_4:22986734-22986753 Msa0844510:intron 40.0%
!!! ATTCCCATCTCTGGTTTTGA+GGG - chr5_4:22986735-22986754 Msa0844510:intron 40.0%
!!! TGGTTTTGAGGGAGATAACT+TGG - chr5_4:22986746-22986765 Msa0844510:intron 40.0%
TTAAGAGCTTCAAGAAGGGT+GGG + chr5_4:22986807-22986826 None:intergenic 40.0%
TCGGTTAAGAGCTTCAAGAA+GGG + chr5_4:22986811-22986830 None:intergenic 40.0%
TTCGGTTAAGAGCTTCAAGA+AGG + chr5_4:22986812-22986831 None:intergenic 40.0%
GTCTACAAGATTGGAGGAAT+TGG - chr5_4:22986885-22986904 Msa0844510:intron 40.0%
TCTCACATTATCACCAGGAA+GGG + chr5_4:22987036-22987055 None:intergenic 40.0%
ATCTCACATTATCACCAGGA+AGG + chr5_4:22987037-22987056 None:intergenic 40.0%
GCAAATCTCACATTATCACC+AGG + chr5_4:22987041-22987060 None:intergenic 40.0%
TGTAAAGTTAATGGCCTCCT+TGG + chr5_4:22987132-22987151 None:intergenic 40.0%
GAGCCCAAATTCTTGAAGAA+AGG - chr5_4:22987296-22987315 Msa0844510:intron 40.0%
! TTCTTGAAGAAAGGTGATGG+TGG - chr5_4:22987305-22987324 Msa0844510:intron 40.0%
GAAAAAGTCTCTACCACCAT+GGG + chr5_4:22987356-22987375 None:intergenic 40.0%
AGAAAAAGTCTCTACCACCA+TGG + chr5_4:22987357-22987376 None:intergenic 40.0%
TGATTCCAATAGCCACAGTT+TGG + chr5_4:22987421-22987440 None:intergenic 40.0%
TGTGGCTATTGGAATCATCT+TGG - chr5_4:22987424-22987443 Msa0844510:intron 40.0%
CATCTTGGTTGTGAACAAGA+AGG - chr5_4:22987439-22987458 Msa0844510:intron 40.0%
AAGAAGGATCCTAGTGAAAG+AGG - chr5_4:22987455-22987474 Msa0844510:intron 40.0%
GTGATCTTACCTCTTTCACT+AGG + chr5_4:22987467-22987486 None:intergenic 40.0%
GCTAACGGTTGAAAATTTGG+GGG + chr5_4:22987616-22987635 None:intergenic 40.0%
GCTAACGGTTGAAAATTTGG+GGG + chr5_4:22987616-22987635 None:intergenic 40.0%
!!! TCGATTTTGACTACCTTGCT+TGG + chr5_4:22988011-22988030 None:intergenic 40.0%
ATCGAGATCTTAGGCAAGAT+CGG - chr5_4:22988026-22988045 Msa0844510:intron 40.0%
TGAATCTGGGTGAATTGCAT+TGG - chr5_4:22988394-22988413 Msa0844510:intron 40.0%
AACGAATCGTTTCAGGGAAT+AGG - chr5_4:22988542-22988561 Msa0844510:intron 40.0%
!! AAACGCGTTTTGATGAAACC+GGG - chr5_4:22988604-22988623 Msa0844510:intron 40.0%
! TCCTTAAAATTCGGGTTTCC+GGG + chr5_4:22988642-22988661 None:intergenic 40.0%
!! ATCGTACGATTTGCTGATTC+CGG + chr5_4:22988671-22988690 None:intergenic 40.0%
AAAATCGCGATCCAACTCAT+GGG + chr5_4:22988803-22988822 None:intergenic 40.0%
! CACCAAGAGCACAAAAAGAA+AGG + chr5_4:22989046-22989065 None:intergenic 40.0%
TCGTCGAAATAAACAGCTGA+TGG - chr5_4:22989103-22989122 Msa0844510:intron 40.0%
!!! TGTTAGTTTTGCACTAGAGC+TGG + chr5_4:22989313-22989332 None:intergenic 40.0%
ATAGTTAACTAGGAAGGGAG+GGG + chr5_4:22989460-22989479 None:intergenic 40.0%
CTCCCTTCATTCCAAATCTT+TGG + chr5_4:22989537-22989556 None:intergenic 40.0%
! AAAAGGTGTGCAAATATGCC+AGG + chr5_4:22989579-22989598 None:intergenic 40.0%
!! AAGAAGCCTTTTGGGTGATT+AGG + chr5_4:22989620-22989639 None:intergenic 40.0%
! GTCTCAAGAAGAAGCCTTTT+GGG + chr5_4:22989628-22989647 None:intergenic 40.0%
! TGTCTCAAGAAGAAGCCTTT+TGG + chr5_4:22989629-22989648 None:intergenic 40.0%
!! ATAGGCCACTTAATTTGCTC+TGG - chr5_4:22989769-22989788 Msa0844510:CDS 40.0%
CAAGAATTTCCCAAAGAGGA+GGG + chr5_4:22989844-22989863 None:intergenic 40.0%
ACAAGAATTTCCCAAAGAGG+AGG + chr5_4:22989845-22989864 None:intergenic 40.0%
TAGGTGACAGACATTCTTGA+AGG + chr5_4:22989988-22990007 None:intergenic 40.0%
!!! CACTACTGTACCTTTTTTCC+TGG - chr5_4:22990012-22990031 Msa0844510:CDS 40.0%
GAGCAGAACATCAAAAATCC+AGG + chr5_4:22990033-22990052 None:intergenic 40.0%
ACTTGAATGTGACTTCTACC+TGG - chr5_4:22990180-22990199 Msa0844510:CDS 40.0%
GCAAAAATGTAACTACTGGG+GGG - chr5_4:22990302-22990321 Msa0844510:CDS 40.0%
CCAAAGCATATGTGTGTCTT+TGG + chr5_4:22990980-22990999 None:intergenic 40.0%
CCAAAGACACACATATGCTT+TGG - chr5_4:22990977-22990996 Msa0844510:intron 40.0%
ATGTCGACCCATGTTTAGAA+AGG + chr5_4:22991221-22991240 None:intergenic 40.0%
!! CATCGATATCACCGATTCGT+AGG - chr5_4:22985557-22985576 Msa0844510:three_prime_UTR 45.0%
GGGTACGTATGCGATTACAT+AGG - chr5_4:22985598-22985617 Msa0844510:three_prime_UTR 45.0%
GTAGAACAAATGACCAGCAG+TGG + chr5_4:22986145-22986164 None:intergenic 45.0%
!! GCTTGGAGGCATTTCAAAGA+TGG - chr5_4:22986167-22986186 Msa0844510:three_prime_UTR 45.0%
GTGGGTTCTTGACAAACTCA+AGG - chr5_4:22986248-22986267 Msa0844510:three_prime_UTR 45.0%
TAATGAAATCCCTGTGTCCG+GGG + chr5_4:22986356-22986375 None:intergenic 45.0%
!! ATCGTTGATTCCACTCATGC+TGG - chr5_4:22986420-22986439 Msa0844510:intron 45.0%
!!! GATTCCACTCATGCTGGTTT+TGG - chr5_4:22986426-22986445 Msa0844510:intron 45.0%
GGAGCCGGTATTTCCAATAA+TGG - chr5_4:22986447-22986466 Msa0844510:intron 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG + chr5_4:22986479-22986498 None:intergenic 45.0%
TGACACCAAGAGAGTAAGCA+AGG + chr5_4:22986494-22986513 None:intergenic 45.0%
AATGATCTGCTGCTGCAACA+AGG - chr5_4:22986518-22986537 Msa0844510:intron 45.0%
TCTTGACAGATGGATGCCTT+TGG - chr5_4:22986618-22986637 Msa0844510:intron 45.0%
ACCTACGCTTGAAGGAAAAG+GGG + chr5_4:22986644-22986663 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG + chr5_4:22986741-22986760 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG + chr5_4:22986742-22986761 None:intergenic 45.0%
GTTAAGAGCTTCAAGAAGGG+TGG + chr5_4:22986808-22986827 None:intergenic 45.0%
ACCGAATCAAAGAGCCTAAG+AGG - chr5_4:22986826-22986845 Msa0844510:intron 45.0%
GCCTCTTAGGCTCTTTGATT+CGG + chr5_4:22986830-22986849 None:intergenic 45.0%
AGACACCCTGAAGTGGTAAT+CGG + chr5_4:22986869-22986888 None:intergenic 45.0%
ATCTTGTAGACACCCTGAAG+TGG + chr5_4:22986876-22986895 None:intergenic 45.0%
! CTTCAGGGTGTCTACAAGAT+TGG - chr5_4:22986876-22986895 Msa0844510:intron 45.0%
GATTGGAGGAATTGGAACTG+TGG - chr5_4:22986893-22986912 Msa0844510:intron 45.0%
TGGTGTCTTGAAACGTGGAA+TGG - chr5_4:22986935-22986954 Msa0844510:intron 45.0%
TGTCTTGAAACGTGGAATGG+TGG - chr5_4:22986938-22986957 Msa0844510:intron 45.0%
TGAAGTGACGTCTGTGAAGA+TGG - chr5_4:22986989-22987008 Msa0844510:intron 45.0%
! AGTTTGAGGCAACATAGCCT+CGG + chr5_4:22987094-22987113 None:intergenic 45.0%
GTTATCATCACGAATCACCC+TGG - chr5_4:22987158-22987177 Msa0844510:intron 45.0%
!! AACCCTTATCGATTTGGCCA+GGG + chr5_4:22987178-22987197 None:intergenic 45.0%
!! TAACCCTTATCGATTTGGCC+AGG + chr5_4:22987179-22987198 None:intergenic 45.0%
AAACTTGACAGCCATGTAGG+AGG + chr5_4:22987225-22987244 None:intergenic 45.0%
AGCAAACTTGACAGCCATGT+AGG + chr5_4:22987228-22987247 None:intergenic 45.0%
! GTTTGCTAAGCTTCTTGCCA+AGG - chr5_4:22987241-22987260 Msa0844510:intron 45.0%
ACAATAAAACGGCCGAGTGA+AGG + chr5_4:22987386-22987405 None:intergenic 45.0%
! AACAGTCCGCGTTTTCAATG+TGG + chr5_4:22987496-22987515 None:intergenic 45.0%
ATCTTAGGCAAGATCGGAGA+GGG - chr5_4:22988032-22988051 Msa0844510:intron 45.0%
! TTTTGATGAAACCGGGTCGT+GGG - chr5_4:22988611-22988630 Msa0844510:intron 45.0%
! TAAAATTCGGGTTTCCGGGT+TGG + chr5_4:22988638-22988657 None:intergenic 45.0%
! ACCCGGAAACCCGAATTTTA+AGG - chr5_4:22988638-22988657 Msa0844510:intron 45.0%
AATCGTACGATCCCATGAGT+TGG - chr5_4:22988789-22988808 Msa0844510:intron 45.0%
CAAAATCGCGATCCAACTCA+TGG + chr5_4:22988804-22988823 None:intergenic 45.0%
TGCACTAATACGCCTTGATG+AGG - chr5_4:22989221-22989240 Msa0844510:intron 45.0%
!! GATACAAAGGTGCCTCATCA+AGG + chr5_4:22989236-22989255 None:intergenic 45.0%
CACATCCGCACATTAGCTAA+AGG - chr5_4:22989340-22989359 Msa0844510:intron 45.0%
TAGTTAACTAGGAAGGGAGG+GGG + chr5_4:22989459-22989478 None:intergenic 45.0%
TATGCCAGGAAGATTTCGGA+CGG + chr5_4:22989565-22989584 None:intergenic 45.0%
AAAATTCACCGGTGGGCAAT+GGG + chr5_4:22989664-22989683 None:intergenic 45.0%
AAAAATTCACCGGTGGGCAA+TGG + chr5_4:22989665-22989684 None:intergenic 45.0%
GTGACAGACATTCTTGAAGG+TGG + chr5_4:22989985-22990004 None:intergenic 45.0%
TTCTGCTCACGGTTGTTACA+TGG - chr5_4:22990045-22990064 Msa0844510:CDS 45.0%
GGATAGGCTGAACTATTTGG+TGG - chr5_4:22990330-22990349 Msa0844510:intron 45.0%
! TAGGCTGAACTATTTGGTGG+AGG - chr5_4:22990333-22990352 Msa0844510:intron 45.0%
GGAATCTGATACTGCGCATA+TGG - chr5_4:22990776-22990795 Msa0844510:CDS 45.0%
TGATACTGCGCATATGGAGT+TGG - chr5_4:22990782-22990801 Msa0844510:CDS 45.0%
! GCATATGGAGTTGGTTGATG+AGG - chr5_4:22990791-22990810 Msa0844510:CDS 45.0%
GGATAGAACTATTCTGTCCG+CGG + chr5_4:22991289-22991308 None:intergenic 45.0%
! GCGGACAGAATAGTTCTATC+CGG - chr5_4:22991288-22991307 Msa0844510:intron 45.0%
! TAGTTCTATCCGGTCACTTC+TGG - chr5_4:22991298-22991317 Msa0844510:intron 45.0%
!! TATTTCATAAAAATAAATAA+AGG - chr5_4:22990853-22990872 Msa0844510:CDS 5.0%
TTTCAACGCAGCGTCCTTCA+AGG - chr5_4:22985494-22985513 Msa0844510:three_prime_UTR 50.0%
! GATGATAGTGCAGCGGTACT+TGG + chr5_4:22986328-22986347 None:intergenic 50.0%
AATGAAATCCCTGTGTCCGG+GGG + chr5_4:22986355-22986374 None:intergenic 50.0%
!!! ACTCATGCTGGTTTTGGAGC+CGG - chr5_4:22986432-22986451 Msa0844510:intron 50.0%
GCTCTCCTTGCTTACTCTCT+TGG - chr5_4:22986486-22986505 Msa0844510:intron 50.0%
CTTGAAGGAAAAGGGGCCAA+AGG + chr5_4:22986637-22986656 None:intergenic 50.0%
GGCTTGTCTGATAGCCTCTT+AGG + chr5_4:22986843-22986862 None:intergenic 50.0%
CCTCTCCGATTACCACTTCA+GGG - chr5_4:22986861-22986880 Msa0844510:intron 50.0%
! CAGGGTGTCTACAAGATTGG+AGG - chr5_4:22986879-22986898 Msa0844510:intron 50.0%
GGAATTGGAACTGTGGCTGT+AGG - chr5_4:22986900-22986919 Msa0844510:intron 50.0%
CTGTGGCTGTAGGATGTGTT+AGG - chr5_4:22986910-22986929 Msa0844510:intron 50.0%
GCTGTAGGATGTGTTAGGAC+TGG - chr5_4:22986915-22986934 Msa0844510:intron 50.0%
! AGGACTGGTGTCTTGAAACG+TGG - chr5_4:22986930-22986949 Msa0844510:intron 50.0%
! GTGGTGACTTTTGCCCCAAA+TGG - chr5_4:22986957-22986976 Msa0844510:intron 50.0%
! TGACTTTTGCCCCAAATGGC+CGG - chr5_4:22986961-22986980 Msa0844510:intron 50.0%
GGACCATGAAGATCTTTCCG+AGG - chr5_4:22987010-22987029 Msa0844510:intron 50.0%
ATTATCACCAGGAAGGGCCT+CGG + chr5_4:22987030-22987049 None:intergenic 50.0%
TGGGTGATGCTTGGAGTTTG+AGG + chr5_4:22987108-22987127 None:intergenic 50.0%
AGTTAATGGCCTCCTTGGCT+GGG + chr5_4:22987127-22987146 None:intergenic 50.0%
AAGTTAATGGCCTCCTTGGC+TGG + chr5_4:22987128-22987147 None:intergenic 50.0%
TCACCCTGGCCAAATCGATA+AGG - chr5_4:22987172-22987191 Msa0844510:intron 50.0%
CACCCTGGCCAAATCGATAA+GGG - chr5_4:22987173-22987192 Msa0844510:intron 50.0%
GAGGTGTGGCAGTTAAGAAC+AGG + chr5_4:22987206-22987225 None:intergenic 50.0%
TAACTGCCACACCTCCTACA+TGG - chr5_4:22987211-22987230 Msa0844510:intron 50.0%
AGCTTCTTGCCAAGGTAGAC+AGG - chr5_4:22987249-22987268 Msa0844510:intron 50.0%
! GCCAAGGTAGACAGGTTTTC+TGG - chr5_4:22987257-22987276 Msa0844510:intron 50.0%
GCCAGAAAACCTGTCTACCT+TGG + chr5_4:22987261-22987280 None:intergenic 50.0%
CAGAGATAAGCGCCAAACTG+TGG - chr5_4:22987406-22987425 Msa0844510:intron 50.0%
AAGCGCCAAACTGTGGCTAT+TGG - chr5_4:22987413-22987432 Msa0844510:intron 50.0%
!! GAAAACGCGGACTGTTTTGC+AGG - chr5_4:22987500-22987519 Msa0844510:intron 50.0%
GATCTTAGGCAAGATCGGAG+AGG - chr5_4:22988031-22988050 Msa0844510:intron 50.0%
TCTTAGGCAAGATCGGAGAG+GGG - chr5_4:22988033-22988052 Msa0844510:intron 50.0%
GGGGTCACAAGATCGTGAAT+CGG - chr5_4:22988052-22988071 Msa0844510:intron 50.0%
GGGTCACAAGATCGTGAATC+GGG - chr5_4:22988053-22988072 Msa0844510:intron 50.0%
GGTCACAAGATCGTGAATCG+GGG - chr5_4:22988054-22988073 Msa0844510:intron 50.0%
GTCACAAGATCGTGAATCGG+GGG - chr5_4:22988055-22988074 Msa0844510:intron 50.0%
TGAATCGGGGGATCGTAACA+CGG - chr5_4:22988067-22988086 Msa0844510:intron 50.0%
!! GTTTTGATGAAACCGGGTCG+TGG - chr5_4:22988610-22988629 Msa0844510:intron 50.0%
GTATGGCCGGAATCGGAATA+TGG + chr5_4:22988738-22988757 None:intergenic 50.0%
CACGGCCTTTAGCTAATGTG+CGG + chr5_4:22989348-22989367 None:intergenic 50.0%
GCTTAAGCTCTCTCGACTGA+AGG - chr5_4:22989380-22989399 Msa0844510:intron 50.0%
!! AGGGGGTACTTTGGAAGGAT+AGG + chr5_4:22989442-22989461 None:intergenic 50.0%
ACTTCCGTCCGAAATCTTCC+TGG - chr5_4:22989558-22989577 Msa0844510:CDS 50.0%
!! AAGAAGCGGACTACACTACC+AGG + chr5_4:22990201-22990220 None:intergenic 50.0%
! TGTAACTACTGGGGGGCATA+AGG - chr5_4:22990309-22990328 Msa0844510:CDS 50.0%
CTGAGAGCTTGAAGAAACCG+CGG - chr5_4:22991269-22991288 Msa0844510:intron 50.0%
TATCCGGTCACTTCTGGTAG+AGG - chr5_4:22991304-22991323 Msa0844510:intron 50.0%
CTTCCTCTACCAGAAGTGAC+CGG + chr5_4:22991310-22991329 None:intergenic 50.0%
CTGGTAGAGGAAGCAGAGTT+TGG - chr5_4:22991317-22991336 Msa0844510:intron 50.0%
TCTGGGAAGTCAACCACTGC+TGG - chr5_4:22986129-22986148 Msa0844510:intron 55.0%
!! GGGCATCGATGATAGTGCAG+CGG + chr5_4:22986335-22986354 None:intergenic 55.0%
TGCACTATCATCGATGCCCC+CGG - chr5_4:22986336-22986355 Msa0844510:intron 55.0%
GGCTCCAAAACCAGCATGAG+TGG + chr5_4:22986433-22986452 None:intergenic 55.0%
! GCCCCTTTTCCTTCAAGCGT+AGG - chr5_4:22986640-22986659 Msa0844510:intron 55.0%
GCCTCTCCGATTACCACTTC+AGG - chr5_4:22986860-22986879 Msa0844510:intron 55.0%
CCCTGAAGTGGTAATCGGAG+AGG + chr5_4:22986864-22986883 None:intergenic 55.0%
TTCACCTTGCCGGCCATTTG+GGG + chr5_4:22986973-22986992 None:intergenic 55.0%
CTTCACCTTGCCGGCCATTT+GGG + chr5_4:22986974-22986993 None:intergenic 55.0%
ACTTCACCTTGCCGGCCATT+TGG + chr5_4:22986975-22986994 None:intergenic 55.0%
CAGACGTCACTTCACCTTGC+CGG + chr5_4:22986983-22987002 None:intergenic 55.0%
GGGCCTCGGAAAGATCTTCA+TGG + chr5_4:22987016-22987035 None:intergenic 55.0%
TCTGATGCACATCTCAGCCG+AGG - chr5_4:22987074-22987093 Msa0844510:intron 55.0%
TGACAGCCATGTAGGAGGTG+TGG + chr5_4:22987220-22987239 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG - chr5_4:22987337-22987356 Msa0844510:intron 55.0%
! TCTACCACCATGGGCTTGGT+GGG + chr5_4:22987347-22987366 None:intergenic 55.0%
AGTCTCTACCACCATGGGCT+TGG + chr5_4:22987351-22987370 None:intergenic 55.0%
GCGGAAAATCGTGGATACGG+CGG + chr5_4:22988695-22988714 None:intergenic 55.0%
! GCCGTATCCACGATTTTCCG+CGG - chr5_4:22988694-22988713 Msa0844510:intron 55.0%
GCCGCGGAAAATCGTGGATA+CGG + chr5_4:22988698-22988717 None:intergenic 55.0%
!! GAATCGGAATATGGTGGGCG+CGG + chr5_4:22988729-22988748 None:intergenic 55.0%
CGCCCACCATATTCCGATTC+CGG - chr5_4:22988729-22988748 Msa0844510:intron 55.0%
GGCCGGAATCGGAATATGGT+GGG + chr5_4:22988734-22988753 None:intergenic 55.0%
TGGCCGGAATCGGAATATGG+TGG + chr5_4:22988735-22988754 None:intergenic 55.0%
TGCTGGAGTATGGCCGGAAT+CGG + chr5_4:22988745-22988764 None:intergenic 55.0%
TTGACGTGCTGGAGTATGGC+CGG + chr5_4:22988751-22988770 None:intergenic 55.0%
GCCATACTCCAGCACGTCAA+GGG - chr5_4:22988751-22988770 Msa0844510:intron 55.0%
CCATACTCCAGCACGTCAAG+GGG - chr5_4:22988752-22988771 Msa0844510:intron 55.0%
CTTGTTACCCCTTGACGTGC+TGG + chr5_4:22988762-22988781 None:intergenic 55.0%
!! AAGGGAGGGGGTACTTTGGA+AGG + chr5_4:22989447-22989466 None:intergenic 55.0%
!! TAGGAAGGGAGGGGGTACTT+TGG + chr5_4:22989451-22989470 None:intergenic 55.0%
TGGGCAATGGGCGTCCAAAT+AGG + chr5_4:22989652-22989671 None:intergenic 55.0%
TCGTCTCTGTCCCTCCTCTT+TGG - chr5_4:22989831-22989850 Msa0844510:CDS 55.0%
CGTCTCTGTCCCTCCTCTTT+GGG - chr5_4:22989832-22989851 Msa0844510:CDS 55.0%
! CTACTGGGGGGCATAAGGAT+AGG - chr5_4:22990314-22990333 Msa0844510:CDS 55.0%
CTCAAGGCTGAGCGCGAAAG+AGG - chr5_4:22986264-22986283 Msa0844510:three_prime_UTR 60.0%
TTTGCCCCAAATGGCCGGCA+AGG - chr5_4:22986966-22986985 Msa0844510:intron 60.0%
GATCTTTCCGAGGCCCTTCC+TGG - chr5_4:22987020-22987039 Msa0844510:intron 60.0%
CTCCAAGCATCACCCAGCCA+AGG - chr5_4:22987112-22987131 Msa0844510:intron 60.0%
CTCCTTGGCTGGGTGATGCT+TGG + chr5_4:22987117-22987136 None:intergenic 60.0%
CAAGCATCACCCAGCCAAGG+AGG - chr5_4:22987115-22987134 Msa0844510:intron 60.0%
GATTCCCACCAAGCCCATGG+TGG - chr5_4:22987340-22987359 Msa0844510:intron 60.0%
CTCTACCACCATGGGCTTGG+TGG + chr5_4:22987348-22987367 None:intergenic 60.0%
AGGATCGCCGCGGAAAATCG+TGG + chr5_4:22988704-22988723 None:intergenic 60.0%
! ACGATTTTCCGCGGCGATCC+TGG - chr5_4:22988703-22988722 Msa0844510:intron 60.0%
GGCCATACTCCAGCACGTCA+AGG - chr5_4:22988750-22988769 Msa0844510:intron 60.0%
CCCCTTGACGTGCTGGAGTA+TGG + chr5_4:22988755-22988774 None:intergenic 60.0%
TTTGGACGCCCATTGCCCAC+CGG - chr5_4:22989653-22989672 Msa0844510:CDS 60.0%
TCATCGATGCCCCCGGACAC+AGG - chr5_4:22986343-22986362 Msa0844510:intron 65.0%
CATCGATGCCCCCGGACACA+GGG - chr5_4:22986344-22986363 Msa0844510:intron 65.0%
ACCGGGTCGTGGGTCCAACC+CGG - chr5_4:22988621-22988640 Msa0844510:intron 70.0%
! TCCGGGTTGGACCCACGACC+CGG + chr5_4:22988625-22988644 None:intergenic 70.0%
!! GGAATATGGTGGGCGCGGCC+AGG + chr5_4:22988724-22988743 None:intergenic 70.0%
! GGGCGCGGCCAGGATCGCCG+CGG + chr5_4:22988714-22988733 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 22985433 22991530 22985433 ID=Msa0844510;Name=Msa0844510
chr5_4 mRNA 22985433 22991530 22985433 ID=Msa0844510-mRNA-1;Parent=Msa0844510;Name=Msa0844510-mRNA-1;_AED=0.15;_eAED=0.15;_QI=113|1|1|1|0.25|0|5|545|451
chr5_4 exon 22985433 22985698 22985433 ID=Msa0844510-mRNA-1:exon:9392;Parent=Msa0844510-mRNA-1
chr5_4 exon 22986151 22986352 22986151 ID=Msa0844510-mRNA-1:exon:9391;Parent=Msa0844510-mRNA-1
chr5_4 exon 22989396 22990336 22989396 ID=Msa0844510-mRNA-1:exon:9390;Parent=Msa0844510-mRNA-1
chr5_4 exon 22990424 22990945 22990424 ID=Msa0844510-mRNA-1:exon:9389;Parent=Msa0844510-mRNA-1
chr5_4 exon 22991448 22991530 22991448 ID=Msa0844510-mRNA-1:exon:9388;Parent=Msa0844510-mRNA-1
chr5_4 five_prime_UTR 22991448 22991530 22991448 ID=Msa0844510-mRNA-1:five_prime_utr;Parent=Msa0844510-mRNA-1
chr5_4 five_prime_UTR 22990916 22990945 22990916 ID=Msa0844510-mRNA-1:five_prime_utr;Parent=Msa0844510-mRNA-1
chr5_4 CDS 22990424 22990915 22990424 ID=Msa0844510-mRNA-1:cds;Parent=Msa0844510-mRNA-1
chr5_4 CDS 22989473 22990336 22989473 ID=Msa0844510-mRNA-1:cds;Parent=Msa0844510-mRNA-1
chr5_4 three_prime_UTR 22989396 22989472 22989396 ID=Msa0844510-mRNA-1:three_prime_utr;Parent=Msa0844510-mRNA-1
chr5_4 three_prime_UTR 22986151 22986352 22986151 ID=Msa0844510-mRNA-1:three_prime_utr;Parent=Msa0844510-mRNA-1
chr5_4 three_prime_UTR 22985433 22985698 22985433 ID=Msa0844510-mRNA-1:three_prime_utr;Parent=Msa0844510-mRNA-1
Gene Sequence

>Msa0844510

ATGGATAAAGAAGAGGTTCATATTAGTTTTCAAAAAAAAGAAAAGGTTCATATTAACATTGTGGTTATTGGTCATGTCAACTCTGGGAAGTCAACCACTGCTGGTCATTTGTTCTACAAGCTTGGAGGCATTTCAAAGATGGAAATGGACACACTTGAGAATAAAGCTGCTGAGTTAAACAAGGATTCATTCAAGTATGCGTGGGTTCTTGACAAACTCAAGGCTGAGCGCGAAAGAGGTATCACAATTGACAATTCTATGTTGAATTTTGAGACAACCAAGTACCGCTGCACTATCATCGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGGACATCCCAAGCTGATTGTGCTCTTCTTATCGTTGATTCCACTCATGCTGGTTTTGGAGCCGGTATTTCCAATAATGGTCAGATCCGTGAACATGCTCTCCTTGCTTACTCTCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCCTTTGGCCCCTTTTCCTTCAAGCGTAGGTATGAAGAAATTGTGATTCGACTTTCATCAATTTTGATGAACATTGGCTATAAACAAGACGAAATTACATTTATTCCCATCTCTGGTTTTGAGGGAGATAACTTGGTTGAGCCCTCTACTAAACATATTTGGTACAAAGGTCCCACCCTTCTTGAAGCTCTTAACCGAATCAAAGAGCCTAAGAGGCTATCAGACAAGCCTCTCCGATTACCACTTCAGGGTGTCTACAAGATTGGAGGAATTGGAACTGTGGCTGTAGGATGTGTTAGGACTGGTGTCTTGAAACGTGGAATGGTGGTGACTTTTGCCCCAAATGGCCGGCAAGGTGAAGTGACGTCTGTGAAGATGGACCATGAAGATCTTTCCGAGGCCCTTCCTGGTGATAATGTGAGATTTGCTGTTGAGAATGTGTCTGATGCACATCTCAGCCGAGGCTATGTTGCCTCAAACTCCAAGCATCACCCAGCCAAGGAGGCCATTAACTTTACATCTCAAGTTATCATCACGAATCACCCTGGCCAAATCGATAAGGGTTATACACCTGTTCTTAACTGCCACACCTCCTACATGGCTGTCAAGTTTGCTAAGCTTCTTGCCAAGGTAGACAGGTTTTCTGGCAAGATAATTGAGAAGGAGCCCAAATTCTTGAAGAAAGGTGATGGTGGCATTATTCAGATGATTCCCACCAAGCCCATGGTGGTAGAGACTTTTTCTGAATATCCTTCACTCGGCCGTTTTATTGTCAGAGATAAGCGCCAAACTGTGGCTATTGGAATCATCTTGGTTGTGAACAAGAAGGATCCTAGTGAAAGAGGTAAGATCACTTAA
Protein sequence

>Msa0844510

MDKEEVHISFQKKEKVHINIVVIGHVNSGKSTTAGHLFYKLGGISKMEMDTLENKAAELNKDSFKYAWVLDKLKAERERGITIDNSMLNFETTKYRCTIIDAPGHRDFIKNMITGTSQADCALLIVDSTHAGFGAGISNNGQIREHALLAYSLGVKQMICCCNKMDAFGPFSFKRRYEEIVIRLSSILMNIGYKQDEITFIPISGFEGDNLVEPSTKHIWYKGPTLLEALNRIKEPKRLSDKPLRLPLQGVYKIGGIGTVAVGCVRTGVLKRGMVVTFAPNGRQGEVTSVKMDHEDLSEALPGDNVRFAVENVSDAHLSRGYVASNSKHHPAKEAINFTSQVIITNHPGQIDKGYTPVLNCHTSYMAVKFAKLLAKVDRFSGKIIEKEPKFLKKGDGGIIQMIPTKPMVVETFSEYPSLGRFIVRDKRQTVAIGIILVVNKKDPSERGKIT*