Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945840 | RYR46459.1 | 73.200 | 250 | 56 | 4 | 1 | 243 | 1 | 246 | 1.54e-117 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945840 | sp|Q8VY57|ARL8A_ARATH | 55.328 | 244 | 49 | 2 | 1 | 244 | 1 | 184 | 3.36e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0945840 | -0.811250 | 7.689618e-51 | -8.615850e-47 |
| Msa0008410 | Msa0945840 | 0.804611 | 1.988089e-49 | -8.615850e-47 |
| Msa0027390 | Msa0945840 | 0.816094 | 6.602758e-52 | -8.615850e-47 |
| Msa0045490 | Msa0945840 | 0.817786 | 2.751995e-52 | -8.615850e-47 |
| Msa0048000 | Msa0945840 | 0.818072 | 2.372494e-52 | -8.615850e-47 |
| Msa0050730 | Msa0945840 | 0.803216 | 3.874604e-49 | -8.615850e-47 |
| Msa0050760 | Msa0945840 | 0.822631 | 2.136119e-53 | -8.615850e-47 |
| Msa0073460 | Msa0945840 | 0.820346 | 7.200758e-53 | -8.615850e-47 |
| Msa0076000 | Msa0945840 | 0.815184 | 1.052862e-51 | -8.615850e-47 |
| Msa0619070 | Msa0945840 | 0.824161 | 9.378494e-54 | -8.615850e-47 |
| Msa0643250 | Msa0945840 | 0.826732 | 2.308458e-54 | -8.615850e-47 |
| Msa0682950 | Msa0945840 | 0.814355 | 1.606801e-51 | -8.615850e-47 |
| Msa0693380 | Msa0945840 | 0.824137 | 9.497192e-54 | -8.615850e-47 |
| Msa0724830 | Msa0945840 | 0.805342 | 1.398416e-49 | -8.615850e-47 |
| Msa0726860 | Msa0945840 | 0.819155 | 1.347093e-52 | -8.615850e-47 |
| Msa0737800 | Msa0945840 | 0.818877 | 1.558282e-52 | -8.615850e-47 |
| Msa0743200 | Msa0945840 | 0.808424 | 3.119058e-50 | -8.615850e-47 |
| Msa0754720 | Msa0945840 | -0.819644 | 1.042537e-52 | -8.615850e-47 |
| Msa0756530 | Msa0945840 | 0.803101 | 4.093378e-49 | -8.615850e-47 |
| Msa0757050 | Msa0945840 | 0.802755 | 4.825550e-49 | -8.615850e-47 |
| Msa0770350 | Msa0945840 | 0.808508 | 2.992748e-50 | -8.615850e-47 |
| Msa0814320 | Msa0945840 | 0.816108 | 6.555487e-52 | -8.615850e-47 |
| Msa0817270 | Msa0945840 | 0.818045 | 2.405386e-52 | -8.615850e-47 |
| Msa0820250 | Msa0945840 | 0.803777 | 2.965258e-49 | -8.615850e-47 |
| Msa0148340 | Msa0945840 | 0.806510 | 7.942815e-50 | -8.615850e-47 |
| Msa0165300 | Msa0945840 | 0.820657 | 6.109918e-53 | -8.615850e-47 |
| Msa0165970 | Msa0945840 | 0.820702 | 5.965090e-53 | -8.615850e-47 |
| Msa0187500 | Msa0945840 | 0.805171 | 1.518324e-49 | -8.615850e-47 |
| Msa0198530 | Msa0945840 | 0.806651 | 7.415342e-50 | -8.615850e-47 |
| Msa0216240 | Msa0945840 | 0.804673 | 1.929212e-49 | -8.615850e-47 |
| Msa0223740 | Msa0945840 | 0.800758 | 1.240295e-48 | -8.615850e-47 |
| Msa0227910 | Msa0945840 | 0.910176 | 2.509452e-82 | -8.615850e-47 |
| Msa0236440 | Msa0945840 | 0.804622 | 1.977737e-49 | -8.615850e-47 |
| Msa0372660 | Msa0945840 | 0.800344 | 1.506348e-48 | -8.615850e-47 |
| Msa0393710 | Msa0945840 | 0.809922 | 1.489222e-50 | -8.615850e-47 |
| Msa0426330 | Msa0945840 | 0.808660 | 2.776637e-50 | -8.615850e-47 |
| Msa0428170 | Msa0945840 | 0.807501 | 4.900461e-50 | -8.615850e-47 |
| Msa0464900 | Msa0945840 | 0.832419 | 9.555081e-56 | -8.615850e-47 |
| Msa0239940 | Msa0945840 | 0.800473 | 1.417442e-48 | -8.615850e-47 |
| Msa0248980 | Msa0945840 | 0.818149 | 2.278705e-52 | -8.615850e-47 |
| Msa0259270 | Msa0945840 | 0.820014 | 8.580431e-53 | -8.615850e-47 |
| Msa0260810 | Msa0945840 | 0.812305 | 4.532555e-51 | -8.615850e-47 |
| Msa0267870 | Msa0945840 | 0.805384 | 1.370000e-49 | -8.615850e-47 |
| Msa0276920 | Msa0945840 | 0.831226 | 1.881770e-55 | -8.615850e-47 |
| Msa0287310 | Msa0945840 | 0.819911 | 9.056038e-53 | -8.615850e-47 |
| Msa0317730 | Msa0945840 | 0.802421 | 5.654865e-49 | -8.615850e-47 |
| Msa0325850 | Msa0945840 | 0.820275 | 7.477405e-53 | -8.615850e-47 |
| Msa0327410 | Msa0945840 | 0.812524 | 4.059449e-51 | -8.615850e-47 |
| Msa0335040 | Msa0945840 | 0.809055 | 2.285885e-50 | -8.615850e-47 |
| Msa0484780 | Msa0945840 | 0.834648 | 2.653748e-56 | -8.615850e-47 |
| Msa0484840 | Msa0945840 | 0.808916 | 2.447526e-50 | -8.615850e-47 |
| Msa0485120 | Msa0945840 | 0.802170 | 6.371357e-49 | -8.615850e-47 |
| Msa0532710 | Msa0945840 | 0.812207 | 4.761945e-51 | -8.615850e-47 |
| Msa0547400 | Msa0945840 | 0.841449 | 4.719337e-58 | -8.615850e-47 |
| Msa0568820 | Msa0945840 | 0.825422 | 4.728223e-54 | -8.615850e-47 |
| Msa0575470 | Msa0945840 | 0.812728 | 3.664157e-51 | -8.615850e-47 |
| Msa0602120 | Msa0945840 | 0.805438 | 1.334559e-49 | -8.615850e-47 |
| Msa0856190 | Msa0945840 | 0.913249 | 7.655432e-84 | -8.615850e-47 |
| Msa0863370 | Msa0945840 | 0.834699 | 2.576395e-56 | -8.615850e-47 |
| Msa0863870 | Msa0945840 | 0.802989 | 4.317795e-49 | -8.615850e-47 |
| Msa0881020 | Msa0945840 | 0.830668 | 2.579986e-55 | -8.615850e-47 |
| Msa0881030 | Msa0945840 | 0.837130 | 6.231360e-57 | -8.615850e-47 |
| Msa0881580 | Msa0945840 | 0.806520 | 7.902950e-50 | -8.615850e-47 |
| Msa0882510 | Msa0945840 | 0.808955 | 2.401111e-50 | -8.615850e-47 |
| Msa0899230 | Msa0945840 | 0.800064 | 1.717618e-48 | -8.615850e-47 |
| Msa0908170 | Msa0945840 | 0.847374 | 1.203996e-59 | -8.615850e-47 |
| Msa0910980 | Msa0945840 | -0.819686 | 1.019328e-52 | -8.615850e-47 |
| Msa0927670 | Msa0945840 | 0.810455 | 1.142846e-50 | -8.615850e-47 |
| Msa0933230 | Msa0945840 | 0.841566 | 4.397887e-58 | -8.615850e-47 |
| Msa0933310 | Msa0945840 | 0.843230 | 1.592220e-58 | -8.615850e-47 |
| Msa0939000 | Msa0945840 | 0.806066 | 9.851364e-50 | -8.615850e-47 |
| Msa0945840 | Msa0959010 | 0.802712 | 4.925255e-49 | -8.615850e-47 |
| Msa0945840 | Msa0960160 | 0.824229 | 9.039229e-54 | -8.615850e-47 |
| Msa0945840 | Msa0967370 | 0.806909 | 6.542765e-50 | -8.615850e-47 |
| Msa0945840 | Msa0971090 | 0.844617 | 6.765010e-59 | -8.615850e-47 |
| Msa0945840 | Msa0986920 | 0.803462 | 3.446932e-49 | -8.615850e-47 |
| Msa0945840 | Msa0999040 | 0.813821 | 2.107634e-51 | -8.615850e-47 |
| Msa0945840 | Msa1037700 | -0.800354 | 1.499258e-48 | -8.615850e-47 |
| Msa0945840 | Msa1040890 | 0.803962 | 2.713434e-49 | -8.615850e-47 |
| Msa0945840 | Msa1080160 | 0.831092 | 2.030127e-55 | -8.615850e-47 |
| Msa0945840 | Msa1082500 | 0.811203 | 7.872031e-51 | -8.615850e-47 |
| Msa0945840 | Msa1100720 | 0.802620 | 5.145732e-49 | -8.615850e-47 |
| Msa0945840 | Msa1125470 | 0.803658 | 3.139066e-49 | -8.615850e-47 |
| Msa0945840 | Msa1130210 | -0.812995 | 3.201459e-51 | -8.615850e-47 |
| Msa0945840 | Msa1130270 | -0.806406 | 8.353527e-50 | -8.615850e-47 |
| Msa0945840 | Msa1172670 | 0.812557 | 3.994058e-51 | -8.615850e-47 |
| Msa0945840 | Msa1174850 | 0.806675 | 7.332705e-50 | -8.615850e-47 |
| Msa0945840 | Msa1185540 | 0.813682 | 2.262335e-51 | -8.615850e-47 |
| Msa0945840 | Msa1201560 | 0.806140 | 9.504157e-50 | -8.615850e-47 |
| Msa0945840 | Msa1214880 | 0.816457 | 5.476083e-52 | -8.615850e-47 |
| Msa0945840 | Msa1214890 | 0.813485 | 2.499892e-51 | -8.615850e-47 |
| Msa0945840 | Msa1233500 | 0.801158 | 1.027253e-48 | -8.615850e-47 |
| Msa0945840 | Msa1254510 | 0.815380 | 9.524450e-52 | -8.615850e-47 |
| Msa0945840 | Msa1255040 | -0.803076 | 4.142195e-49 | -8.615850e-47 |
| Msa0945840 | Msa1280620 | 0.820141 | 8.023967e-53 | -8.615850e-47 |
| Msa0945840 | Msa1300860 | 0.817267 | 3.603464e-52 | -8.615850e-47 |
| Msa0945840 | Msa1331910 | 0.819521 | 1.111661e-52 | -8.615850e-47 |
| Msa0945840 | Msa1331920 | 0.813337 | 2.693438e-51 | -8.615850e-47 |
| Msa0945840 | Msa1367750 | 0.816813 | 4.557532e-52 | -8.615850e-47 |
| Msa0945840 | Msa1371640 | 0.821388 | 4.146483e-53 | -8.615850e-47 |
| Msa0945840 | Msa1376200 | 0.812695 | 3.725826e-51 | -8.615850e-47 |
| Msa0945840 | Msa1389400 | 0.802621 | 5.143617e-49 | -8.615850e-47 |
| Msa0945840 | Msa1402270 | 0.810612 | 1.057275e-50 | -8.615850e-47 |
| Msa0945840 | Msa1404540 | 0.816663 | 4.924256e-52 | -8.615850e-47 |
| Msa0945840 | Msa1414690 | 0.820831 | 5.572915e-53 | -8.615850e-47 |
| Msa0945840 | Msa1431060 | 0.815270 | 1.007531e-51 | -8.615850e-47 |
| Msa0945840 | Msa1440600 | 0.823031 | 1.723898e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945840 | MtrunA17_Chr5g0401071 | 57.438 | 242 | 43 | 2 | 1 | 242 | 1 | 182 | 1.23e-90 | 265 |
| Msa0945840 | MtrunA17_Chr5g0434561 | 90.826 | 109 | 9 | 1 | 1 | 108 | 1 | 109 | 7.47e-65 | 199 |
| Msa0945840 | MtrunA17_Chr5g0434561 | 100.000 | 89 | 0 | 0 | 156 | 244 | 96 | 184 | 2.51e-57 | 180 |
| Msa0945840 | MtrunA17_Chr4g0012371 | 70.588 | 102 | 27 | 2 | 20 | 118 | 1 | 102 | 5.80e-44 | 145 |
| Msa0945840 | MtrunA17_Chr4g0012371 | 69.663 | 89 | 27 | 0 | 156 | 244 | 77 | 165 | 3.10e-38 | 131 |
| Msa0945840 | MtrunA17_Chr1g0188111 | 27.723 | 202 | 85 | 5 | 14 | 215 | 12 | 152 | 1.94e-13 | 66.6 |
| Msa0945840 | MtrunA17_Chr1g0194261 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 2.10e-13 | 66.6 |
| Msa0945840 | MtrunA17_Chr7g0270301 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 2.19e-13 | 66.6 |
| Msa0945840 | MtrunA17_Chr6g0450081 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 3.71e-13 | 65.9 |
| Msa0945840 | MtrunA17_Chr5g0413451 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 3.75e-13 | 65.9 |
| Msa0945840 | MtrunA17_Chr5g0413441 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 3.75e-13 | 65.9 |
| Msa0945840 | MtrunA17_Chr5g0401761 | 35.366 | 82 | 52 | 1 | 11 | 92 | 9 | 89 | 7.97e-13 | 65.1 |
| Msa0945840 | MtrunA17_Chr4g0039591 | 36.250 | 80 | 50 | 1 | 13 | 92 | 11 | 89 | 2.11e-12 | 63.9 |
| Msa0945840 | MtrunA17_Chr4g0072861 | 38.298 | 94 | 53 | 2 | 13 | 106 | 11 | 99 | 2.95e-12 | 63.5 |
| Msa0945840 | MtrunA17_Chr5g0395641 | 39.024 | 82 | 47 | 2 | 13 | 92 | 11 | 91 | 1.15e-11 | 62.0 |
| Msa0945840 | MtrunA17_Chr5g0395631 | 33.750 | 80 | 52 | 1 | 13 | 92 | 11 | 89 | 1.67e-11 | 61.6 |
| Msa0945840 | MtrunA17_Chr2g0287721 | 32.990 | 97 | 52 | 2 | 2 | 92 | 7 | 96 | 1.91e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945840 | AT3G49870.1 | 55.328 | 244 | 49 | 2 | 1 | 244 | 1 | 184 | 3.42e-87 | 256 |
| Msa0945840 | AT5G67560.1 | 55.328 | 244 | 49 | 3 | 1 | 244 | 1 | 184 | 2.99e-85 | 251 |
| Msa0945840 | AT3G49870.2 | 53.333 | 225 | 45 | 2 | 20 | 244 | 1 | 165 | 8.24e-75 | 224 |
| Msa0945840 | AT5G37680.1 | 88.991 | 109 | 11 | 1 | 1 | 108 | 1 | 109 | 4.89e-64 | 198 |
| Msa0945840 | AT5G37680.1 | 90.909 | 88 | 8 | 0 | 156 | 243 | 96 | 183 | 8.02e-53 | 169 |
| Msa0945840 | AT3G49860.1 | 47.137 | 227 | 60 | 2 | 18 | 244 | 10 | 176 | 2.75e-63 | 196 |
| Msa0945840 | AT5G37680.2 | 90.909 | 88 | 8 | 0 | 156 | 243 | 49 | 136 | 3.26e-53 | 169 |
| Msa0945840 | AT5G37680.2 | 82.258 | 62 | 10 | 1 | 48 | 108 | 1 | 62 | 2.48e-28 | 105 |
| Msa0945840 | AT1G10630.1 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 2.73e-13 | 66.6 |
| Msa0945840 | AT1G10630.2 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 2.73e-13 | 66.6 |
| Msa0945840 | AT1G23490.1 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT1G70490.2 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT1G70490.7 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT1G70490.4 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT1G70490.3 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT1G70490.1 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT1G70490.6 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT1G70490.5 | 35.849 | 106 | 61 | 3 | 1 | 106 | 1 | 99 | 3.45e-13 | 66.2 |
| Msa0945840 | AT3G22950.1 | 40.000 | 80 | 47 | 1 | 14 | 93 | 12 | 90 | 4.65e-13 | 65.9 |
| Msa0945840 | AT3G22950.2 | 40.000 | 80 | 47 | 1 | 14 | 93 | 12 | 90 | 4.65e-13 | 65.9 |
| Msa0945840 | AT5G14670.2 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 5.17e-13 | 65.9 |
| Msa0945840 | AT5G14670.3 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 5.17e-13 | 65.9 |
| Msa0945840 | AT5G14670.1 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 5.67e-13 | 65.9 |
| Msa0945840 | AT3G62290.3 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 6.14e-13 | 65.5 |
| Msa0945840 | AT3G62290.1 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 6.14e-13 | 65.5 |
| Msa0945840 | AT3G62290.2 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 6.14e-13 | 65.5 |
| Msa0945840 | AT2G47170.2 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 6.52e-13 | 65.5 |
| Msa0945840 | AT2G47170.1 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 6.52e-13 | 65.5 |
| Msa0945840 | AT2G47170.3 | 36.559 | 93 | 54 | 2 | 14 | 106 | 12 | 99 | 6.52e-13 | 65.5 |
| Msa0945840 | AT3G03120.2 | 35.000 | 80 | 51 | 1 | 13 | 92 | 11 | 89 | 9.27e-13 | 63.9 |
| Msa0945840 | AT2G24765.2 | 37.234 | 94 | 54 | 2 | 13 | 106 | 11 | 99 | 2.70e-12 | 62.8 |
| Msa0945840 | AT3G03120.1 | 35.000 | 80 | 51 | 1 | 13 | 92 | 11 | 89 | 4.48e-12 | 63.5 |
| Msa0945840 | AT5G17060.2 | 35.000 | 80 | 51 | 1 | 13 | 92 | 11 | 89 | 5.32e-12 | 63.2 |
| Msa0945840 | AT5G17060.1 | 35.000 | 80 | 51 | 1 | 13 | 92 | 11 | 89 | 5.32e-12 | 63.2 |
| Msa0945840 | AT2G24765.1 | 36.458 | 96 | 56 | 2 | 11 | 106 | 9 | 99 | 6.40e-12 | 62.8 |
| Msa0945840 | AT5G52210.1 | 32.990 | 97 | 52 | 2 | 2 | 92 | 7 | 96 | 1.16e-11 | 62.8 |
| Msa0945840 | AT5G52210.2 | 32.990 | 97 | 52 | 2 | 2 | 92 | 7 | 96 | 1.16e-11 | 62.8 |
Find 76 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGCCTGTTTCAAGAATT+TGG | 0.064022 | 6_3:-25078016 | Msa0945840:CDS |
| TTTAATTCACTTCGAGTTAT+TGG | 0.140016 | 6_3:+25077463 | None:intergenic |
| AACAAATTGCTTCGTTGATT+TGG | 0.213779 | 6_3:-25076772 | Msa0945840:three_prime_UTR |
| GAAAATCACAAGGCGGTTAT+TGG | 0.233317 | 6_3:-25079393 | Msa0945840:CDS |
| CTTGATATTGTACCAAGTTT+TGG | 0.243962 | 6_3:-25076949 | Msa0945840:three_prime_UTR |
| GGGATTCCTTTGCTTGTTCT+TGG | 0.246105 | 6_3:-25077412 | Msa0945840:CDS |
| ACAATAAAGCTTTGGGATCT+TGG | 0.278062 | 6_3:-25080503 | Msa0945840:CDS |
| AAGCAATTTGTTTAAATTGT+TGG | 0.310341 | 6_3:+25076783 | None:intergenic |
| TTCTTCCTATTCTCAACAAA+TGG | 0.313436 | 6_3:-25081247 | Msa0945840:exon |
| ATGGAAGATTTGACCAAGTT+TGG | 0.317834 | 6_3:+25076998 | None:intergenic |
| TCTGGGATTCTCTTCTCAAT+TGG | 0.329088 | 6_3:-25081221 | Msa0945840:CDS |
| GAGATGGAGCTTTCTCTTGT+AGG | 0.329952 | 6_3:-25080856 | Msa0945840:CDS |
| TTGACCCACAACTAAAATTA+AGG | 0.339003 | 6_3:+25077042 | None:intergenic |
| ATTCTCAACAAATGGGTCTC+TGG | 0.360022 | 6_3:-25081239 | Msa0945840:exon |
| ACCGCCTGTTTCAAGAATTT+GGG | 0.367414 | 6_3:-25078015 | Msa0945840:CDS |
| GAGATTCATCCTTTGTTGAT+AGG | 0.386303 | 6_3:-25079435 | Msa0945840:CDS |
| GAAATGTCACAATAAAGCTT+TGG | 0.389200 | 6_3:-25080511 | Msa0945840:CDS |
| AAAATCACAAGGCGGTTATT+GGG | 0.390592 | 6_3:-25079392 | Msa0945840:CDS |
| ACATTCCACAAACCATTCAT+TGG | 0.393712 | 6_3:-25081288 | Msa0945840:five_prime_UTR |
| CTGACCAAACCTTCCTTGAA+TGG | 0.415538 | 6_3:-25077433 | Msa0945840:CDS |
| TTGATCTACCAATGCTTGCT+TGG | 0.418148 | 6_3:+25077360 | None:intergenic |
| AAATGTCACAATAAAGCTTT+GGG | 0.418458 | 6_3:-25080510 | Msa0945840:CDS |
| CTCTTCTCAATTGGCTCCGC+AGG | 0.421148 | 6_3:-25081212 | Msa0945840:intron |
| AAGAGGACAAGAATTGGAAA+GGG | 0.428893 | 6_3:-25081451 | None:intergenic |
| GTTGAGAATAGGAAGAAAGA+AGG | 0.434689 | 6_3:+25081253 | None:intergenic |
| AATCCCATTCAAGGAAGGTT+TGG | 0.436571 | 6_3:+25077429 | None:intergenic |
| AGCGACCAATGAATGGTTTG+TGG | 0.443931 | 6_3:+25081283 | None:intergenic |
| CTTGTAGGTCTTCAGAATGC+TGG | 0.454580 | 6_3:-25080841 | Msa0945840:CDS |
| TTCAAGAATTTGGGTACCTC+AGG | 0.455163 | 6_3:-25078006 | Msa0945840:intron |
| TGACCAAACCTTCCTTGAAT+GGG | 0.458229 | 6_3:-25077432 | Msa0945840:CDS |
| GGTACCCAAATTCTTGAAAC+AGG | 0.460482 | 6_3:+25078011 | None:intergenic |
| GAATGGTTTGTGGAATGTTA+AGG | 0.461935 | 6_3:+25081293 | None:intergenic |
| TTCTCAACAAATGGGTCTCT+GGG | 0.469026 | 6_3:-25081238 | Msa0945840:exon |
| TCTTCCTATTCTCAACAAAT+GGG | 0.470674 | 6_3:-25081246 | Msa0945840:exon |
| GAGACCCATTTGTTGAGAAT+AGG | 0.470753 | 6_3:+25081242 | None:intergenic |
| AAACTTTAGCGACCAATGAA+TGG | 0.477552 | 6_3:+25081276 | None:intergenic |
| AATTGCTTCGTTGATTTGGA+AGG | 0.481442 | 6_3:-25076768 | None:intergenic |
| AACAGAAACCATCCAAAACT+TGG | 0.482714 | 6_3:+25076937 | None:intergenic |
| CATTCAAGGAAGGTTTGGTC+AGG | 0.486407 | 6_3:+25077434 | None:intergenic |
| GTGTAGGTGGTAGGCGTCGA+AGG | 0.498935 | 6_3:+25078036 | None:intergenic |
| TTGCTACATGATTTCATGCA+AGG | 0.505231 | 6_3:-25077167 | Msa0945840:CDS |
| AAGCAAAGGAATCCCATTCA+AGG | 0.513568 | 6_3:+25077420 | None:intergenic |
| AGCTCTTTCCAAGCAAGCAT+TGG | 0.513878 | 6_3:-25077368 | Msa0945840:CDS |
| ATTCTTGAAACAGGCGGTGT+AGG | 0.526168 | 6_3:+25078020 | None:intergenic |
| ACATAGATGTGGTCATCGAC+TGG | 0.530688 | 6_3:-25077135 | Msa0945840:CDS |
| AAAGAGGACAAGAATTGGAA+AGG | 0.538629 | 6_3:-25081452 | None:intergenic |
| CTAACTGTTCTGTCAAACAT+AGG | 0.544380 | 6_3:+25079334 | None:intergenic |
| TTTGGGATCTTGGTGGTCAA+CGG | 0.548867 | 6_3:-25080493 | Msa0945840:CDS |
| TTGTGGAATGTTAAGGAAGG+AGG | 0.549544 | 6_3:+25081300 | None:intergenic |
| TTGTGTACAGTAACCAAACT+TGG | 0.550375 | 6_3:-25077011 | Msa0945840:three_prime_UTR |
| AAACAGGCGGTGTAGGTGGT+AGG | 0.554998 | 6_3:+25078027 | None:intergenic |
| ATAAAGCTTTGGGATCTTGG+TGG | 0.559424 | 6_3:-25080500 | Msa0945840:CDS |
| AATATGCGAAAAGTGACAAA+GGG | 0.561008 | 6_3:-25080533 | Msa0945840:CDS |
| TTGTTTCCAAGAACAAGCAA+AGG | 0.570676 | 6_3:+25077406 | None:intergenic |
| AGTAAGATGTTGATACGATA+CGG | 0.571733 | 6_3:+25081340 | None:intergenic |
| GTCTATGCATTACACTGGAA+AGG | 0.572286 | 6_3:+25077064 | None:intergenic |
| TTTACTCAAGAAACATTGCA+TGG | 0.572723 | 6_3:+25076979 | None:intergenic |
| GTATTATTGTGATCTAAATG+TGG | 0.574237 | 6_3:-25076867 | Msa0945840:three_prime_UTR |
| TTAAGGTCTATGCATTACAC+TGG | 0.574461 | 6_3:+25077059 | None:intergenic |
| CTTGAAACAGGCGGTGTAGG+TGG | 0.574629 | 6_3:+25078023 | None:intergenic |
| AGAGGACAAGAATTGGAAAG+GGG | 0.576237 | 6_3:-25081450 | None:intergenic |
| ATGTGGGAGCGCTACTGTCG+CGG | 0.588919 | 6_3:-25080458 | Msa0945840:CDS |
| AAAGGAATCCCATTCAAGGA+AGG | 0.597544 | 6_3:+25077424 | None:intergenic |
| CAATATGCGAAAAGTGACAA+AGG | 0.599692 | 6_3:-25080534 | Msa0945840:CDS |
| GGTTTGTGGAATGTTAAGGA+AGG | 0.600095 | 6_3:+25081297 | None:intergenic |
| GGGATCTTGGTGGTCAACGG+AGG | 0.604641 | 6_3:-25080490 | Msa0945840:CDS |
| ACGGAGGTTTCGAACAATGT+GGG | 0.644507 | 6_3:-25080474 | Msa0945840:CDS |
| GTAGATTCACACACAAAACA+AGG | 0.649203 | 6_3:-25081418 | Msa0945840:five_prime_UTR |
| GGATTCTGTAAACATAGATG+TGG | 0.658596 | 6_3:-25077146 | Msa0945840:CDS |
| AATTGGAAAGGGGAATCACA+AGG | 0.659154 | 6_3:-25081440 | Msa0945840:five_prime_UTR |
| AACGGAGGTTTCGAACAATG+TGG | 0.660702 | 6_3:-25080475 | Msa0945840:CDS |
| TTGATGAGACCTATCAACAA+AGG | 0.681666 | 6_3:+25079426 | None:intergenic |
| CCAGTATCAAGAAAATCACA+AGG | 0.685548 | 6_3:-25079403 | Msa0945840:CDS |
| ACCCAAATTCTTGAAACAGG+CGG | 0.691779 | 6_3:+25078014 | None:intergenic |
| TGAGTCAATTAAAGACAGAG+AGG | 0.706022 | 6_3:-25077194 | Msa0945840:CDS |
| GTATCAAGAAAATCACAAGG+CGG | 0.799782 | 6_3:-25079400 | Msa0945840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTTGTTTAAAAATATT+TGG | - | chr6_3:25081320-25081339 | Msa0945840:five_prime_UTR | 10.0% |
| !! | AAAGAAATAAGAATAAAGAA+AGG | + | chr6_3:25077036-25077055 | None:intergenic | 15.0% |
| !! | AAATTCATACAAAATTACTT+GGG | + | chr6_3:25077276-25077295 | None:intergenic | 15.0% |
| !!! | TAATTTTAACTCATTATTAC+TGG | - | chr6_3:25077445-25077464 | Msa0945840:CDS | 15.0% |
| !! | TAACATAGAATTTAAATGTT+GGG | - | chr6_3:25078031-25078050 | Msa0945840:CDS | 15.0% |
| !! | AGAAATTATAGATGATTATT+AGG | - | chr6_3:25078373-25078392 | Msa0945840:intron | 15.0% |
| !!! | ATGCTCTTTTTTTTTTTTAA+CGG | - | chr6_3:25079873-25079892 | Msa0945840:intron | 15.0% |
| !! | ATCATATGATATATAGTAAC+TGG | + | chr6_3:25077105-25077124 | None:intergenic | 20.0% |
| !! | TTACTCTAATACAAATTTAG+AGG | + | chr6_3:25077190-25077209 | None:intergenic | 20.0% |
| !! | CAAATTCATACAAAATTACT+TGG | + | chr6_3:25077277-25077296 | None:intergenic | 20.0% |
| !!! | CTTATTTTTTAAACAAGAGA+TGG | - | chr6_3:25077337-25077356 | Msa0945840:intron | 20.0% |
| !! | ACATTTGAATTCAGAATTTA+AGG | - | chr6_3:25077597-25077616 | Msa0945840:intron | 20.0% |
| !! | GTAACATAGAATTTAAATGT+TGG | - | chr6_3:25078030-25078049 | Msa0945840:CDS | 20.0% |
| !! | TAAAGATAAAGTTACCTTAT+TGG | + | chr6_3:25079541-25079560 | None:intergenic | 20.0% |
| !!! | TAAAAAAAAAAAAGAGCATC+TGG | + | chr6_3:25079872-25079891 | None:intergenic | 20.0% |
| !!! | ATCTTGATAATAAAAAACAG+TGG | + | chr6_3:25080275-25080294 | None:intergenic | 20.0% |
| !! | TTTATTATCAAGATGTTGAT+TGG | - | chr6_3:25080281-25080300 | Msa0945840:intron | 20.0% |
| !! | GTTCAAACATAGAAATATAA+AGG | - | chr6_3:25080326-25080345 | Msa0945840:intron | 20.0% |
| !!! | AGACTTTTATTGAACAATTT+TGG | - | chr6_3:25080356-25080375 | Msa0945840:intron | 20.0% |
| !!! | TTTTATGAATAAACAGAGAA+AGG | + | chr6_3:25080499-25080518 | None:intergenic | 20.0% |
| !!! | AGTTATGTTTTTATTACGTA+AGG | + | chr6_3:25080534-25080553 | None:intergenic | 20.0% |
| !!! | AAGCAATTTGTTTAAATTGT+TGG | + | chr6_3:25081429-25081448 | None:intergenic | 20.0% |
| ! | AAGAATAAAGAAAGGAAAGT+GGG | + | chr6_3:25077028-25077047 | None:intergenic | 25.0% |
| ! | TAAGAATAAAGAAAGGAAAG+TGG | + | chr6_3:25077029-25077048 | None:intergenic | 25.0% |
| ! | ATGATATATAGTAACTGGAA+TGG | + | chr6_3:25077100-25077119 | None:intergenic | 25.0% |
| ! | ATTAGAGTAAAGATCCAATT+TGG | - | chr6_3:25077200-25077219 | Msa0945840:CDS | 25.0% |
| ! | AAAATTGCGAATAACCAAAT+TGG | + | chr6_3:25077217-25077236 | None:intergenic | 25.0% |
| ! | AAAGTAAAGATACTTACAGT+TGG | + | chr6_3:25077571-25077590 | None:intergenic | 25.0% |
| !!! | GAATTTTGCTATTGAACTTT+AGG | - | chr6_3:25077645-25077664 | Msa0945840:intron | 25.0% |
| ! | AAATGTCACAATAAAGCTTT+GGG | - | chr6_3:25077699-25077718 | Msa0945840:intron | 25.0% |
| !!! | TCCTTTGTCATTTTTTTTGA+AGG | - | chr6_3:25077852-25077871 | Msa0945840:intron | 25.0% |
| ! | ACCTTCAAAAAAAATGACAA+AGG | + | chr6_3:25077856-25077875 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGAAGGTTGTGT+TGG | - | chr6_3:25077861-25077880 | Msa0945840:intron | 25.0% |
| ! | GGAGAAATAAGAAAATACTA+AGG | - | chr6_3:25077999-25078018 | Msa0945840:intron | 25.0% |
| !!! | TAGTTGTTTTATATGCAGTA+GGG | - | chr6_3:25078069-25078088 | Msa0945840:intron | 25.0% |
| ! | CAGCAATGATTGAATTAATA+TGG | - | chr6_3:25078116-25078135 | Msa0945840:intron | 25.0% |
| !!! | ATTAATATGGTGTTGTTCTA+AGG | - | chr6_3:25078129-25078148 | Msa0945840:intron | 25.0% |
| !! | TGTGATAATTGTTTTCTCAT+AGG | - | chr6_3:25078201-25078220 | Msa0945840:intron | 25.0% |
| ! | TTTATTATAAACCCTATAGC+TGG | - | chr6_3:25078305-25078324 | Msa0945840:intron | 25.0% |
| !! | ACCTATTCTAGATCTAAAAT+TGG | - | chr6_3:25078523-25078542 | Msa0945840:intron | 25.0% |
| !!! | TCCAATTTTAGATCTAGAAT+AGG | + | chr6_3:25078527-25078546 | None:intergenic | 25.0% |
| ! | ATTGGACATATTTATACAAG+TGG | + | chr6_3:25078550-25078569 | None:intergenic | 25.0% |
| ! | TACTTGTCATTCTTAGAATT+TGG | + | chr6_3:25078662-25078681 | None:intergenic | 25.0% |
| !! | AAATTCTAAGAATGACAAGT+AGG | - | chr6_3:25078661-25078680 | Msa0945840:intron | 25.0% |
| !! | AATTCTAAGAATGACAAGTA+GGG | - | chr6_3:25078662-25078681 | Msa0945840:intron | 25.0% |
| ! | TGAAGTAGACTCTTATAAAA+CGG | - | chr6_3:25079080-25079099 | Msa0945840:intron | 25.0% |
| ! | AAAGCTAACAATTCTTCAAA+GGG | + | chr6_3:25079130-25079149 | None:intergenic | 25.0% |
| ! | AAAAGCTAACAATTCTTCAA+AGG | + | chr6_3:25079131-25079150 | None:intergenic | 25.0% |
| ! | AGTTCATCCTAAAATGATTT+CGG | - | chr6_3:25079420-25079439 | Msa0945840:CDS | 25.0% |
| !! | TTTCGGTTAGTCAATATAAT+TGG | - | chr6_3:25079437-25079456 | Msa0945840:CDS | 25.0% |
| !! | TTCGGTTAGTCAATATAATT+GGG | - | chr6_3:25079438-25079457 | Msa0945840:CDS | 25.0% |
| ! | AATATAATTGGGTCAAAACA+TGG | - | chr6_3:25079449-25079468 | Msa0945840:CDS | 25.0% |
| ! | ATATAATTGGGTCAAAACAT+GGG | - | chr6_3:25079450-25079469 | Msa0945840:CDS | 25.0% |
| ! | TAAGGTAACTTTATCTTTAG+TGG | - | chr6_3:25079542-25079561 | Msa0945840:intron | 25.0% |
| ! | TCAACAGTTTGTCTATATAT+TGG | + | chr6_3:25079693-25079712 | None:intergenic | 25.0% |
| ! | TGGTTATAAAAACAAGTATC+AGG | + | chr6_3:25080255-25080274 | None:intergenic | 25.0% |
| !! | CTATAGTAAAATCTAAAGTC+TGG | + | chr6_3:25080391-25080410 | None:intergenic | 25.0% |
| !! | CAGACTTTAGATTTTACTAT+AGG | - | chr6_3:25080389-25080408 | Msa0945840:intron | 25.0% |
| ! | TTACAGAATTATAAGAGTCT+TGG | - | chr6_3:25080421-25080440 | Msa0945840:intron | 25.0% |
| ! | TTATCAGAGAAAAATACAAG+AGG | + | chr6_3:25080578-25080597 | None:intergenic | 25.0% |
| !! | TTTAATTCACTTCGAGTTAT+TGG | + | chr6_3:25080749-25080768 | None:intergenic | 25.0% |
| !!! | ACAGTAATGATGATGATTTT+CGG | + | chr6_3:25080900-25080919 | None:intergenic | 25.0% |
| !!! | ATAGACCTTAATTTTAGTTG+TGG | - | chr6_3:25081162-25081181 | Msa0945840:intron | 25.0% |
| !!! | TAGACCTTAATTTTAGTTGT+GGG | - | chr6_3:25081163-25081182 | Msa0945840:intron | 25.0% |
| ! | GTATTATTGTGATCTAAATG+TGG | - | chr6_3:25081342-25081361 | Msa0945840:five_prime_UTR | 25.0% |
| TAAAAACACAAAACGAACGT+AGG | + | chr6_3:25076844-25076863 | None:intergenic | 30.0% | |
| AGTAAGATGTTGATACGATA+CGG | + | chr6_3:25076872-25076891 | None:intergenic | 30.0% | |
| TTCTTCCTATTCTCAACAAA+TGG | - | chr6_3:25076962-25076981 | Msa0945840:three_prime_UTR | 30.0% | |
| TCTTCCTATTCTCAACAAAT+GGG | - | chr6_3:25076963-25076982 | Msa0945840:three_prime_UTR | 30.0% | |
| TTAGAGGTTTAACAACATCA+AGG | + | chr6_3:25077174-25077193 | None:intergenic | 30.0% | |
| ! | GATTGTGAATTTGTGTGTTT+TGG | - | chr6_3:25077311-25077330 | Msa0945840:intron | 30.0% |
| !!! | TTTGTTTTGTTTGACAGACA+GGG | - | chr6_3:25077524-25077543 | Msa0945840:intron | 30.0% |
| !! | TTTGCTATTGAACTTTAGGT+TGG | - | chr6_3:25077649-25077668 | Msa0945840:intron | 30.0% |
| ! | TTGCTATTGAACTTTAGGTT+GGG | - | chr6_3:25077650-25077669 | Msa0945840:intron | 30.0% |
| AATATGCGAAAAGTGACAAA+GGG | - | chr6_3:25077676-25077695 | Msa0945840:intron | 30.0% | |
| GAAATGTCACAATAAAGCTT+TGG | - | chr6_3:25077698-25077717 | Msa0945840:intron | 30.0% | |
| !! | CTAGTTGTTTTATATGCAGT+AGG | - | chr6_3:25078068-25078087 | Msa0945840:intron | 30.0% |
| AAAAGGGCTACTAAGTAAAT+TGG | + | chr6_3:25078423-25078442 | None:intergenic | 30.0% | |
| TCATTCTTAGAATTTGGACT+AGG | + | chr6_3:25078656-25078675 | None:intergenic | 30.0% | |
| !! | ATTGGTTTGATCTTCTCAAA+GGG | - | chr6_3:25079029-25079048 | Msa0945840:intron | 30.0% |
| TAGACTCTTATAAAACGGTA+TGG | - | chr6_3:25079085-25079104 | Msa0945840:intron | 30.0% | |
| AGACTCTTATAAAACGGTAT+GGG | - | chr6_3:25079086-25079105 | Msa0945840:intron | 30.0% | |
| ! | ACGTATTGTTAAGGTAGTTT+TGG | + | chr6_3:25079212-25079231 | None:intergenic | 30.0% |
| GAAATACTCACGTATTGTTA+AGG | + | chr6_3:25079221-25079240 | None:intergenic | 30.0% | |
| !! | TGAACCTTCCATTTTAAAGA+TGG | + | chr6_3:25079259-25079278 | None:intergenic | 30.0% |
| ! | TGACTAACCGAAATCATTTT+AGG | + | chr6_3:25079430-25079449 | None:intergenic | 30.0% |
| AAATTGAGGAACAATTAGTG+TGG | - | chr6_3:25079512-25079531 | Msa0945840:intron | 30.0% | |
| ! | CTTTTCAATGAATGAAGAAG+AGG | - | chr6_3:25079801-25079820 | Msa0945840:intron | 30.0% |
| TCCTCATTCTTTCAAACATT+AGG | - | chr6_3:25079837-25079856 | Msa0945840:intron | 30.0% | |
| CCTCATTCTTTCAAACATTA+GGG | - | chr6_3:25079838-25079857 | Msa0945840:intron | 30.0% | |
| TAAAAACAAGTATCAGGAAG+TGG | + | chr6_3:25080249-25080268 | None:intergenic | 30.0% | |
| !!! | TTGAACAATTTTGGTTACTG+AGG | - | chr6_3:25080365-25080384 | Msa0945840:intron | 30.0% |
| AGTTATTGTATGGTTATGGT+AGG | + | chr6_3:25080453-25080472 | None:intergenic | 30.0% | |
| GGATAGTTATTGTATGGTTA+TGG | + | chr6_3:25080457-25080476 | None:intergenic | 30.0% | |
| TGAATAAACAGAGAAAGGAA+AGG | + | chr6_3:25080494-25080513 | None:intergenic | 30.0% | |
| TTAACACATGCTTCATATTG+TGG | - | chr6_3:25080604-25080623 | Msa0945840:intron | 30.0% | |
| ! | GTTTGTTCTTTCGAGTAATT+AGG | - | chr6_3:25080634-25080653 | Msa0945840:intron | 30.0% |
| TAATTAGGAGTTGCATTTCT+TGG | - | chr6_3:25080649-25080668 | Msa0945840:intron | 30.0% | |
| AGTTGTGTTTGCTTTAATCA+TGG | - | chr6_3:25080681-25080700 | Msa0945840:intron | 30.0% | |
| TTGACCCACAACTAAAATTA+AGG | + | chr6_3:25081170-25081189 | None:intergenic | 30.0% | |
| TTTACTCAAGAAACATTGCA+TGG | + | chr6_3:25081233-25081252 | None:intergenic | 30.0% | |
| ! | CTTGATATTGTACCAAGTTT+TGG | - | chr6_3:25081260-25081279 | Msa0945840:five_prime_UTR | 30.0% |
| !!! | ATATTGTACCAAGTTTTGGA+TGG | - | chr6_3:25081264-25081283 | Msa0945840:five_prime_UTR | 30.0% |
| TGGAAAAAAGATCAGTATTG+AGG | - | chr6_3:25081362-25081381 | Msa0945840:five_prime_UTR | 30.0% | |
| ! | ATTGTTGGCACATTTTCATA+TGG | + | chr6_3:25081414-25081433 | None:intergenic | 30.0% |
| ! | AACAAATTGCTTCGTTGATT+TGG | - | chr6_3:25081437-25081456 | Msa0945840:five_prime_UTR | 30.0% |
| GTAGATTCACACACAAAACA+AGG | - | chr6_3:25076791-25076810 | Msa0945840:three_prime_UTR | 35.0% | |
| ! | GAATGGTTTGTGGAATGTTA+AGG | + | chr6_3:25076919-25076938 | None:intergenic | 35.0% |
| ACATTCCACAAACCATTCAT+TGG | - | chr6_3:25076921-25076940 | Msa0945840:three_prime_UTR | 35.0% | |
| AAACTTTAGCGACCAATGAA+TGG | + | chr6_3:25076936-25076955 | None:intergenic | 35.0% | |
| GTTGAGAATAGGAAGAAAGA+AGG | + | chr6_3:25076959-25076978 | None:intergenic | 35.0% | |
| GTGACTATGGTTTCATAGTT+TGG | - | chr6_3:25077488-25077507 | Msa0945840:CDS | 35.0% | |
| !!! | GTTTGTTTTGTTTGACAGAC+AGG | - | chr6_3:25077523-25077542 | Msa0945840:intron | 35.0% |
| !!! | TTGTTTTGTTTGACAGACAG+GGG | - | chr6_3:25077525-25077544 | Msa0945840:intron | 35.0% |
| CAATATGCGAAAAGTGACAA+AGG | - | chr6_3:25077675-25077694 | Msa0945840:intron | 35.0% | |
| !! | ACAATAAAGCTTTGGGATCT+TGG | - | chr6_3:25077706-25077725 | Msa0945840:intron | 35.0% |
| TTCTGTTAGAACCCAAAGTT+AGG | - | chr6_3:25077928-25077947 | Msa0945840:intron | 35.0% | |
| CAGAAAACAAGCCTAAAATG+TGG | - | chr6_3:25077963-25077982 | Msa0945840:intron | 35.0% | |
| !! | AATATGGTGTTGTTCTAAGG+AGG | - | chr6_3:25078132-25078151 | Msa0945840:intron | 35.0% |
| ! | GGAGGACTTATGTAAGTTTT+TGG | - | chr6_3:25078150-25078169 | Msa0945840:intron | 35.0% |
| ! | TTGGATTGGATCACAAAAGT+CGG | + | chr6_3:25078332-25078351 | None:intergenic | 35.0% |
| ! | TTTTGTGATCCAATCCAAGA+GGG | - | chr6_3:25078334-25078353 | Msa0945840:intron | 35.0% |
| ! | GCTATATTTCAAGTCGATGT+GGG | + | chr6_3:25078401-25078420 | None:intergenic | 35.0% |
| ! | AGATTAGCCAAGGCTTAAAA+GGG | + | chr6_3:25078439-25078458 | None:intergenic | 35.0% |
| ! | AAGATTAGCCAAGGCTTAAA+AGG | + | chr6_3:25078440-25078459 | None:intergenic | 35.0% |
| AATAGGTTGCGATACCATAT+TGG | + | chr6_3:25078510-25078529 | None:intergenic | 35.0% | |
| TATGTCCAATACTAGATGTG+AGG | - | chr6_3:25078560-25078579 | Msa0945840:intron | 35.0% | |
| ATGTCCAATACTAGATGTGA+GGG | - | chr6_3:25078561-25078580 | Msa0945840:intron | 35.0% | |
| !!! | AATGTGACTGAACTAGCTTT+TGG | - | chr6_3:25078623-25078642 | Msa0945840:intron | 35.0% |
| !!! | ATGTGACTGAACTAGCTTTT+GGG | - | chr6_3:25078624-25078643 | Msa0945840:intron | 35.0% |
| ATCTGTTGGAAGAATTCAAG+AGG | - | chr6_3:25078688-25078707 | Msa0945840:intron | 35.0% | |
| TCTGTTGGAAGAATTCAAGA+GGG | - | chr6_3:25078689-25078708 | Msa0945840:intron | 35.0% | |
| GAGATTCATCCTTTGTTGAT+AGG | - | chr6_3:25078774-25078793 | Msa0945840:intron | 35.0% | |
| TTGATGAGACCTATCAACAA+AGG | + | chr6_3:25078786-25078805 | None:intergenic | 35.0% | |
| ! | CCTTGTGATTTTCTTGATAC+TGG | + | chr6_3:25078809-25078828 | None:intergenic | 35.0% |
| CCAGTATCAAGAAAATCACA+AGG | - | chr6_3:25078806-25078825 | Msa0945840:intron | 35.0% | |
| GTATCAAGAAAATCACAAGG+CGG | - | chr6_3:25078809-25078828 | Msa0945840:intron | 35.0% | |
| AAAATCACAAGGCGGTTATT+GGG | - | chr6_3:25078817-25078836 | Msa0945840:intron | 35.0% | |
| CTAACTGTTCTGTCAAACAT+AGG | + | chr6_3:25078878-25078897 | None:intergenic | 35.0% | |
| AACACATATCATGGATCACT+AGG | - | chr6_3:25078922-25078941 | Msa0945840:intron | 35.0% | |
| AAACACAACTGAAGAAGTCA+AGG | - | chr6_3:25078968-25078987 | Msa0945840:intron | 35.0% | |
| AATTAGCTGGCCATATATGA+GGG | - | chr6_3:25078995-25079014 | Msa0945840:intron | 35.0% | |
| !! | CATTGGTTTGATCTTCTCAA+AGG | - | chr6_3:25079028-25079047 | Msa0945840:intron | 35.0% |
| TACTTCAACTTATCCCAAGT+CGG | + | chr6_3:25079067-25079086 | None:intergenic | 35.0% | |
| GACTCTTATAAAACGGTATG+GGG | - | chr6_3:25079087-25079106 | Msa0945840:intron | 35.0% | |
| ACTCTTATAAAACGGTATGG+GGG | - | chr6_3:25079088-25079107 | Msa0945840:intron | 35.0% | |
| !!! | TTGTTAGCTTTTCGACTGTT+CGG | - | chr6_3:25079139-25079158 | Msa0945840:intron | 35.0% |
| GGTACTATTGAGCAATATAG+AGG | - | chr6_3:25079160-25079179 | Msa0945840:intron | 35.0% | |
| !!! | TTAAGGTAGTTTTGGTACCT+TGG | + | chr6_3:25079204-25079223 | None:intergenic | 35.0% |
| ATACGTGAGTATTTCATGAG+TGG | - | chr6_3:25079226-25079245 | Msa0945840:intron | 35.0% | |
| ! | GTCTTCAGCCATCTTTAAAA+TGG | - | chr6_3:25079248-25079267 | Msa0945840:intron | 35.0% |
| !! | TCAGCCATCTTTAAAATGGA+AGG | - | chr6_3:25079252-25079271 | Msa0945840:intron | 35.0% |
| ! | ATCAACTGCACTCTATTTTG+AGG | + | chr6_3:25079292-25079311 | None:intergenic | 35.0% |
| TAGAGTGCAGTTGATTAGAA+TGG | - | chr6_3:25079297-25079316 | Msa0945840:intron | 35.0% | |
| GTTGATTAGAATGGCTTAGA+TGG | - | chr6_3:25079306-25079325 | Msa0945840:intron | 35.0% | |
| ATTAGAATGGCTTAGATGGA+AGG | - | chr6_3:25079310-25079329 | Msa0945840:intron | 35.0% | |
| ! | TTTAGGATGAACTGAACCTT+AGG | + | chr6_3:25079413-25079432 | None:intergenic | 35.0% |
| CTTGCTAGAACTTGAATCTA+TGG | + | chr6_3:25079478-25079497 | None:intergenic | 35.0% | |
| ACACGTGATCATACAAATTG+AGG | - | chr6_3:25079498-25079517 | Msa0945840:intron | 35.0% | |
| AATTAGTGTGGCTTCCAATA+AGG | - | chr6_3:25079524-25079543 | Msa0945840:intron | 35.0% | |
| TATCTTTAGTGGCGTTAACA+AGG | - | chr6_3:25079553-25079572 | Msa0945840:intron | 35.0% | |
| CGTTAACAAGGAAATGAGAA+GGG | - | chr6_3:25079565-25079584 | Msa0945840:intron | 35.0% | |
| GTTAACAAGGAAATGAGAAG+GGG | - | chr6_3:25079566-25079585 | Msa0945840:intron | 35.0% | |
| TTAACAAGGAAATGAGAAGG+GGG | - | chr6_3:25079567-25079586 | Msa0945840:intron | 35.0% | |
| AACTTAGAACGTAGAGCTAA+AGG | - | chr6_3:25079628-25079647 | Msa0945840:intron | 35.0% | |
| ACTTAGAACGTAGAGCTAAA+GGG | - | chr6_3:25079629-25079648 | Msa0945840:intron | 35.0% | |
| ACTGTTGATGTTGTTAGTGT+TGG | - | chr6_3:25079705-25079724 | Msa0945840:intron | 35.0% | |
| CCCTAATGTTTGAAAGAATG+AGG | + | chr6_3:25079841-25079860 | None:intergenic | 35.0% | |
| ! | TGTAACTTTGCTCCATTTTC+GGG | + | chr6_3:25079940-25079959 | None:intergenic | 35.0% |
| ! | CTGTAACTTTGCTCCATTTT+CGG | + | chr6_3:25079941-25079960 | None:intergenic | 35.0% |
| !! | TTGTCTTGATTTGGTGACTT+TGG | + | chr6_3:25080059-25080078 | None:intergenic | 35.0% |
| TTATGGCTCTTGTCTTGATT+TGG | + | chr6_3:25080068-25080087 | None:intergenic | 35.0% | |
| GGTTCTTTCATAGTCTGTTA+TGG | + | chr6_3:25080085-25080104 | None:intergenic | 35.0% | |
| ATGAAAGAACCGAAACGTTA+AGG | - | chr6_3:25080094-25080113 | Msa0945840:intron | 35.0% | |
| ! | GTGATGGGATAGTTATTGTA+TGG | + | chr6_3:25080463-25080482 | None:intergenic | 35.0% |
| ! | AGGAGAGTACAGAAATCAAT+TGG | + | chr6_3:25080558-25080577 | None:intergenic | 35.0% |
| TTGTTTCCAAGAACAAGCAA+AGG | + | chr6_3:25080806-25080825 | None:intergenic | 35.0% | |
| TGAGTCAATTAAAGACAGAG+AGG | - | chr6_3:25081015-25081034 | Msa0945840:intron | 35.0% | |
| TTGCTACATGATTTCATGCA+AGG | - | chr6_3:25081042-25081061 | Msa0945840:intron | 35.0% | |
| GGATTCTGTAAACATAGATG+TGG | - | chr6_3:25081063-25081082 | Msa0945840:intron | 35.0% | |
| TTAAGGTCTATGCATTACAC+TGG | + | chr6_3:25081153-25081172 | None:intergenic | 35.0% | |
| TTGTGTACAGTAACCAAACT+TGG | - | chr6_3:25081198-25081217 | Msa0945840:intron | 35.0% | |
| ATGGAAGATTTGACCAAGTT+TGG | + | chr6_3:25081214-25081233 | None:intergenic | 35.0% | |
| AACAGAAACCATCCAAAACT+TGG | + | chr6_3:25081275-25081294 | None:intergenic | 35.0% | |
| TTGTGGAATGTTAAGGAAGG+AGG | + | chr6_3:25076912-25076931 | None:intergenic | 40.0% | |
| GGTTTGTGGAATGTTAAGGA+AGG | + | chr6_3:25076915-25076934 | None:intergenic | 40.0% | |
| ! | GAGACCCATTTGTTGAGAAT+AGG | + | chr6_3:25076970-25076989 | None:intergenic | 40.0% |
| ATTCTCAACAAATGGGTCTC+TGG | - | chr6_3:25076970-25076989 | Msa0945840:three_prime_UTR | 40.0% | |
| TTCTCAACAAATGGGTCTCT+GGG | - | chr6_3:25076971-25076990 | Msa0945840:three_prime_UTR | 40.0% | |
| ! | TCTGGGATTCTCTTCTCAAT+TGG | - | chr6_3:25076988-25077007 | Msa0945840:three_prime_UTR | 40.0% |
| GTTGCTTGTTCTTGTGACTA+TGG | - | chr6_3:25077475-25077494 | Msa0945840:CDS | 40.0% | |
| !!! | TGTTTTGTTTGACAGACAGG+GGG | - | chr6_3:25077526-25077545 | Msa0945840:intron | 40.0% |
| !! | ATAAAGCTTTGGGATCTTGG+TGG | - | chr6_3:25077709-25077728 | Msa0945840:intron | 40.0% |
| ATGATCCAGGACCTAACTTT+GGG | + | chr6_3:25077942-25077961 | None:intergenic | 40.0% | |
| ! | GAGTACACAAGCCACATTTT+AGG | + | chr6_3:25077977-25077996 | None:intergenic | 40.0% |
| ! | AAATGTGGCTTGTGTACTCT+AGG | - | chr6_3:25077978-25077997 | Msa0945840:intron | 40.0% |
| ! | GTTTTCTCATAGGAGAGTCT+CGG | - | chr6_3:25078211-25078230 | Msa0945840:intron | 40.0% |
| !! | GAACTTCCCTATTAGCCTTA+AGG | + | chr6_3:25078237-25078256 | None:intergenic | 40.0% |
| AAGTTCATCTACCATATCCG+CGG | - | chr6_3:25078251-25078270 | Msa0945840:intron | 40.0% | |
| ! | CTTTTGTGATCCAATCCAAG+AGG | - | chr6_3:25078333-25078352 | Msa0945840:intron | 40.0% |
| TTTGTGATCCAATCCAAGAG+GGG | - | chr6_3:25078335-25078354 | Msa0945840:intron | 40.0% | |
| ! | GGCTATATTTCAAGTCGATG+TGG | + | chr6_3:25078402-25078421 | None:intergenic | 40.0% |
| ! | TTAGTAGCCCTTTTAAGCCT+TGG | - | chr6_3:25078429-25078448 | Msa0945840:intron | 40.0% |
| AATCCCATAAGCTACCTCAA+GGG | + | chr6_3:25078466-25078485 | None:intergenic | 40.0% | |
| TAATCCCATAAGCTACCTCA+AGG | + | chr6_3:25078467-25078486 | None:intergenic | 40.0% | |
| GCGATACCATATTGGAGTAT+GGG | + | chr6_3:25078502-25078521 | None:intergenic | 40.0% | |
| TGCGATACCATATTGGAGTA+TGG | + | chr6_3:25078503-25078522 | None:intergenic | 40.0% | |
| TGTCCAATACTAGATGTGAG+GGG | - | chr6_3:25078562-25078581 | Msa0945840:intron | 40.0% | |
| !!! | TGTGACTGAACTAGCTTTTG+GGG | - | chr6_3:25078625-25078644 | Msa0945840:intron | 40.0% |
| AGAATTCAAGAGGGCAAACA+TGG | - | chr6_3:25078698-25078717 | Msa0945840:intron | 40.0% | |
| GCATATGTGTCACAATACTG+AGG | - | chr6_3:25078724-25078743 | Msa0945840:intron | 40.0% | |
| TCACAATACTGAGGATTGCA+GGG | - | chr6_3:25078733-25078752 | Msa0945840:intron | 40.0% | |
| GAAAATCACAAGGCGGTTAT+TGG | - | chr6_3:25078816-25078835 | Msa0945840:intron | 40.0% | |
| AGTCCAAAAAACTCGTCTGA+CGG | - | chr6_3:25078896-25078915 | Msa0945840:intron | 40.0% | |
| TGACGGAACAACACATATCA+TGG | - | chr6_3:25078913-25078932 | Msa0945840:intron | 40.0% | |
| AAGTCAAGGTGAGAATTAGC+TGG | - | chr6_3:25078982-25079001 | Msa0945840:intron | 40.0% | |
| GAATTAGCTGGCCATATATG+AGG | - | chr6_3:25078994-25079013 | Msa0945840:intron | 40.0% | |
| !! | ATCCCAAGTCGGTTTTTCTT+CGG | + | chr6_3:25079056-25079075 | None:intergenic | 40.0% |
| TTATAAAACGGTATGGGGGA+TGG | - | chr6_3:25079092-25079111 | Msa0945840:intron | 40.0% | |
| TATAAAACGGTATGGGGGAT+GGG | - | chr6_3:25079093-25079112 | Msa0945840:intron | 40.0% | |
| !!! | TTTTGTGTTGATTCCCTCCA+AGG | - | chr6_3:25079184-25079203 | Msa0945840:intron | 40.0% |
| AGCCTCAAGAGATGGTTATT+GGG | - | chr6_3:25079345-25079364 | Msa0945840:CDS | 40.0% | |
| TTCCCAATAACCATCTCTTG+AGG | + | chr6_3:25079350-25079369 | None:intergenic | 40.0% | |
| AGATGGTTATTGGGAAACAG+TGG | - | chr6_3:25079354-25079373 | Msa0945840:CDS | 40.0% | |
| !!! | GAGGCAGCTTGTTAAGTTTT+CGG | - | chr6_3:25079382-25079401 | Msa0945840:CDS | 40.0% |
| ! | TAAGTTTTCGGCCTAACCTA+AGG | - | chr6_3:25079394-25079413 | Msa0945840:CDS | 40.0% |
| GATGAACTGAACCTTAGGTT+AGG | + | chr6_3:25079408-25079427 | None:intergenic | 40.0% | |
| GCGTTAACAAGGAAATGAGA+AGG | - | chr6_3:25079564-25079583 | Msa0945840:intron | 40.0% | |
| GTGGTGAAAAATTCCATTCG+CGG | - | chr6_3:25079665-25079684 | Msa0945840:intron | 40.0% | |
| ! | GTTGATGTTGTTAGTGTTGG+AGG | - | chr6_3:25079708-25079727 | Msa0945840:intron | 40.0% |
| !!! | GACTTTGGTCTTGGTGTTTT+GGG | + | chr6_3:25080044-25080063 | None:intergenic | 40.0% |
| !!! | TGACTTTGGTCTTGGTGTTT+TGG | + | chr6_3:25080045-25080064 | None:intergenic | 40.0% |
| !! | TGATTTGGTGACTTTGGTCT+TGG | + | chr6_3:25080053-25080072 | None:intergenic | 40.0% |
| AGACAAAGGCCTTAACGTTT+CGG | + | chr6_3:25080106-25080125 | None:intergenic | 40.0% | |
| ACCGCCTGTTTCAAGAATTT+GGG | - | chr6_3:25080194-25080213 | Msa0945840:intron | 40.0% | |
| ACCCAAATTCTTGAAACAGG+CGG | + | chr6_3:25080198-25080217 | None:intergenic | 40.0% | |
| GGTACCCAAATTCTTGAAAC+AGG | + | chr6_3:25080201-25080220 | None:intergenic | 40.0% | |
| TTCAAGAATTTGGGTACCTC+AGG | - | chr6_3:25080203-25080222 | Msa0945840:intron | 40.0% | |
| ! | ATCAAGATGTTGATTGGTCG+TGG | - | chr6_3:25080287-25080306 | Msa0945840:intron | 40.0% |
| AGAGAAAGGAAAGGAGAAAG+GGG | + | chr6_3:25080485-25080504 | None:intergenic | 40.0% | |
| CAGAGAAAGGAAAGGAGAAA+GGG | + | chr6_3:25080486-25080505 | None:intergenic | 40.0% | |
| ACAGAGAAAGGAAAGGAGAA+AGG | + | chr6_3:25080487-25080506 | None:intergenic | 40.0% | |
| TGACCAAACCTTCCTTGAAT+GGG | - | chr6_3:25080777-25080796 | Msa0945840:intron | 40.0% | |
| AATCCCATTCAAGGAAGGTT+TGG | + | chr6_3:25080783-25080802 | None:intergenic | 40.0% | |
| AAAGGAATCCCATTCAAGGA+AGG | + | chr6_3:25080788-25080807 | None:intergenic | 40.0% | |
| AAGCAAAGGAATCCCATTCA+AGG | + | chr6_3:25080792-25080811 | None:intergenic | 40.0% | |
| TTGATCTACCAATGCTTGCT+TGG | + | chr6_3:25080852-25080871 | None:intergenic | 40.0% | |
| AACCTTTGATTGTTCGACGT+TGG | - | chr6_3:25080976-25080995 | Msa0945840:intron | 40.0% | |
| AACCAACGTCGAACAATCAA+AGG | + | chr6_3:25080981-25081000 | None:intergenic | 40.0% | |
| GTCTATGCATTACACTGGAA+AGG | + | chr6_3:25081148-25081167 | None:intergenic | 40.0% | |
| AGCGACCAATGAATGGTTTG+TGG | + | chr6_3:25076929-25076948 | None:intergenic | 45.0% | |
| !! | AGGAAAGTGGGTTTTACCTG+CGG | + | chr6_3:25077016-25077035 | None:intergenic | 45.0% |
| GAGATGGAGCTTTCTCTTGT+AGG | - | chr6_3:25077353-25077372 | Msa0945840:intron | 45.0% | |
| CTTGTAGGTCTTCAGAATGC+TGG | - | chr6_3:25077368-25077387 | Msa0945840:CDS | 45.0% | |
| ! | TTTGGGATCTTGGTGGTCAA+CGG | - | chr6_3:25077716-25077735 | Msa0945840:intron | 45.0% |
| AACGGAGGTTTCGAACAATG+TGG | - | chr6_3:25077734-25077753 | Msa0945840:intron | 45.0% | |
| ACGGAGGTTTCGAACAATGT+GGG | - | chr6_3:25077735-25077754 | Msa0945840:intron | 45.0% | |
| TAGAACCCAAAGTTAGGTCC+TGG | - | chr6_3:25077934-25077953 | Msa0945840:intron | 45.0% | |
| CATGATCCAGGACCTAACTT+TGG | + | chr6_3:25077943-25077962 | None:intergenic | 45.0% | |
| !! | GCTTGTTTTCTGCATGATCC+AGG | + | chr6_3:25077955-25077974 | None:intergenic | 45.0% |
| TCTCGGCCTTAAGGCTAATA+GGG | - | chr6_3:25078228-25078247 | Msa0945840:intron | 45.0% | |
| AGTTCATCTACCATATCCGC+GGG | - | chr6_3:25078252-25078271 | Msa0945840:intron | 45.0% | |
| ! | ACAAAGAGTACATCAACCCG+CGG | + | chr6_3:25078271-25078290 | None:intergenic | 45.0% |
| CAAAAGTCGGACCAGCTATA+GGG | + | chr6_3:25078319-25078338 | None:intergenic | 45.0% | |
| ACAAAAGTCGGACCAGCTAT+AGG | + | chr6_3:25078320-25078339 | None:intergenic | 45.0% | |
| ATCCCATAAGCTACCTCAAG+GGG | + | chr6_3:25078465-25078484 | None:intergenic | 45.0% | |
| ! | CCATATTGGAGTATGGGCTA+GGG | + | chr6_3:25078496-25078515 | None:intergenic | 45.0% |
| ACCATATTGGAGTATGGGCT+AGG | + | chr6_3:25078497-25078516 | None:intergenic | 45.0% | |
| GTCCAATACTAGATGTGAGG+GGG | - | chr6_3:25078563-25078582 | Msa0945840:intron | 45.0% | |
| TCCAATACTAGATGTGAGGG+GGG | - | chr6_3:25078564-25078583 | Msa0945840:intron | 45.0% | |
| ! | GACAAGTAGGGTTGATCTGT+TGG | - | chr6_3:25078674-25078693 | Msa0945840:intron | 45.0% |
| GTCACAATACTGAGGATTGC+AGG | - | chr6_3:25078732-25078751 | Msa0945840:intron | 45.0% | |
| !!! | GTTCCGTCAGACGAGTTTTT+TGG | + | chr6_3:25078902-25078921 | None:intergenic | 45.0% |
| AGCTGTTCCTCCCTCATATA+TGG | + | chr6_3:25079008-25079027 | None:intergenic | 45.0% | |
| ! | GACCGAAGAAAAACCGACTT+GGG | - | chr6_3:25079051-25079070 | Msa0945840:intron | 45.0% |
| !!! | GGTAGTTTTGGTACCTTGGA+GGG | + | chr6_3:25079200-25079219 | None:intergenic | 45.0% |
| !!! | AGGTAGTTTTGGTACCTTGG+AGG | + | chr6_3:25079201-25079220 | None:intergenic | 45.0% |
| CAGCCTCAAGAGATGGTTAT+TGG | - | chr6_3:25079344-25079363 | Msa0945840:CDS | 45.0% | |
| TGGTTATTGGGAAACAGTGG+TGG | - | chr6_3:25079357-25079376 | Msa0945840:CDS | 45.0% | |
| TTATTGGGAAACAGTGGTGG+TGG | - | chr6_3:25079360-25079379 | Msa0945840:CDS | 45.0% | |
| AAAGGGTTGTGCTTCAAGTG+TGG | - | chr6_3:25079646-25079665 | Msa0945840:intron | 45.0% | |
| !! | CTATATATTGGTGCCGCGAA+TGG | + | chr6_3:25079681-25079700 | None:intergenic | 45.0% |
| GGTTCATCTTGTGCTCGATT+TGG | + | chr6_3:25079919-25079938 | None:intergenic | 45.0% | |
| GCACAAGATGAACCCGAAAA+TGG | - | chr6_3:25079925-25079944 | Msa0945840:intron | 45.0% | |
| ACAACAAAACACCCAGCCAA+AGG | - | chr6_3:25079967-25079986 | Msa0945840:intron | 45.0% | |
| !!! | GTCTTGGTGTTTTGGGATCT+TGG | + | chr6_3:25080037-25080056 | None:intergenic | 45.0% |
| ATTCTTGAAACAGGCGGTGT+AGG | + | chr6_3:25080192-25080211 | None:intergenic | 45.0% | |
| CACCGCCTGTTTCAAGAATT+TGG | - | chr6_3:25080193-25080212 | Msa0945840:intron | 45.0% | |
| TACCTCAGGTCGTAATAGCT+TGG | - | chr6_3:25080217-25080236 | Msa0945840:intron | 45.0% | |
| ATCCAAGCTATTACGACCTG+AGG | + | chr6_3:25080222-25080241 | None:intergenic | 45.0% | |
| TCGTGGATGCTGATAGAAAC+TGG | - | chr6_3:25080304-25080323 | Msa0945840:intron | 45.0% | |
| ! | CATTCAAGGAAGGTTTGGTC+AGG | + | chr6_3:25080778-25080797 | None:intergenic | 45.0% |
| CTGACCAAACCTTCCTTGAA+TGG | - | chr6_3:25080776-25080795 | Msa0945840:intron | 45.0% | |
| GGGATTCCTTTGCTTGTTCT+TGG | - | chr6_3:25080797-25080816 | Msa0945840:intron | 45.0% | |
| AGCTCTTTCCAAGCAAGCAT+TGG | - | chr6_3:25080841-25080860 | Msa0945840:CDS | 45.0% | |
| ! | TCGACGTTGGTTGATTTCAG+AGG | - | chr6_3:25080989-25081008 | Msa0945840:intron | 45.0% |
| ACATAGATGTGGTCATCGAC+TGG | - | chr6_3:25081074-25081093 | Msa0945840:intron | 45.0% | |
| ATAGGAGAGTCTCGGCCTTA+AGG | - | chr6_3:25078219-25078238 | Msa0945840:intron | 50.0% | |
| GTCTCGGCCTTAAGGCTAAT+AGG | - | chr6_3:25078227-25078246 | Msa0945840:intron | 50.0% | |
| AGTACATCAACCCGCGGATA+TGG | + | chr6_3:25078265-25078284 | None:intergenic | 50.0% | |
| !! | GCGGGTTGATGTACTCTTTG+TGG | - | chr6_3:25078270-25078289 | Msa0945840:intron | 50.0% |
| TGATCCAATCCAAGAGGGGA+GGG | - | chr6_3:25078339-25078358 | Msa0945840:intron | 50.0% | |
| AATTCACAACCCTCCCCTCT+TGG | + | chr6_3:25078351-25078370 | None:intergenic | 50.0% | |
| ! | CAAGGGGTGAAGATTAGCCA+AGG | + | chr6_3:25078449-25078468 | None:intergenic | 50.0% |
| TGGCTAATCTTCACCCCTTG+AGG | - | chr6_3:25078449-25078468 | Msa0945840:intron | 50.0% | |
| TCACCCCTTGAGGTAGCTTA+TGG | - | chr6_3:25078459-25078478 | Msa0945840:intron | 50.0% | |
| CACCCCTTGAGGTAGCTTAT+GGG | - | chr6_3:25078460-25078479 | Msa0945840:intron | 50.0% | |
| CCCTAGCCCATACTCCAATA+TGG | - | chr6_3:25078493-25078512 | Msa0945840:intron | 50.0% | |
| ACCCCCCTCACATCTAGTAT+TGG | + | chr6_3:25078568-25078587 | None:intergenic | 50.0% | |
| AATACTAGATGTGAGGGGGG+TGG | - | chr6_3:25078567-25078586 | Msa0945840:intron | 50.0% | |
| TAGCTGGCCATATATGAGGG+AGG | - | chr6_3:25078998-25079017 | Msa0945840:intron | 50.0% | |
| ATGAGGGAGGAACAGCTCAT+TGG | - | chr6_3:25079011-25079030 | Msa0945840:intron | 50.0% | |
| GGACCGAAGAAAAACCGACT+TGG | - | chr6_3:25079050-25079069 | Msa0945840:intron | 50.0% | |
| CAAAGAAGCCATAGCGTCAC+AGG | + | chr6_3:25080139-25080158 | None:intergenic | 50.0% | |
| CTGTGACGCTATGGCTTCTT+TGG | - | chr6_3:25080137-25080156 | Msa0945840:intron | 50.0% | |
| GGAAAGGAGAAAGGGGTGAT+GGG | + | chr6_3:25080478-25080497 | None:intergenic | 50.0% | |
| AGGAAAGGAGAAAGGGGTGA+TGG | + | chr6_3:25080479-25080498 | None:intergenic | 50.0% | |
| ! | CTCTTCTCAATTGGCTCCGC+AGG | - | chr6_3:25076997-25077016 | Msa0945840:three_prime_UTR | 55.0% |
| ACAGACAGGGGGATACAGTG+AGG | - | chr6_3:25077537-25077556 | Msa0945840:intron | 55.0% | |
| GTGATCCAATCCAAGAGGGG+AGG | - | chr6_3:25078338-25078357 | Msa0945840:intron | 55.0% | |
| ACAACCCTCCCCTCTTGGAT+TGG | + | chr6_3:25078346-25078365 | None:intergenic | 55.0% | |
| CACTCTGCAGCCTCAAGAGA+TGG | - | chr6_3:25079337-25079356 | Msa0945840:intron | 55.0% | |
| !! | TTGGGAAACAGTGGTGGTGG+AGG | - | chr6_3:25079363-25079382 | Msa0945840:CDS | 55.0% |
| TGACTCGTGACGTGAGCCTT+TGG | + | chr6_3:25079986-25080005 | None:intergenic | 55.0% | |
| AGAAGCCATAGCGTCACAGG+CGG | + | chr6_3:25080136-25080155 | None:intergenic | 55.0% | |
| AAACAGGCGGTGTAGGTGGT+AGG | + | chr6_3:25080185-25080204 | None:intergenic | 55.0% | |
| CTTGAAACAGGCGGTGTAGG+TGG | + | chr6_3:25080189-25080208 | None:intergenic | 55.0% | |
| ! | GGGATCTTGGTGGTCAACGG+AGG | - | chr6_3:25077719-25077738 | Msa0945840:intron | 60.0% |
| !! | ATGTGGGAGCGCTACTGTCG+CGG | - | chr6_3:25077751-25077770 | Msa0945840:intron | 60.0% |
| CGTGACGTGAGCCTTTGGCT+GGG | + | chr6_3:25079981-25080000 | None:intergenic | 60.0% | |
| TCGTGACGTGAGCCTTTGGC+TGG | + | chr6_3:25079982-25080001 | None:intergenic | 60.0% | |
| CAGGCGGAGGTCAGAGACAA+AGG | + | chr6_3:25080120-25080139 | None:intergenic | 60.0% | |
| !! | GTGTAGGTGGTAGGCGTCGA+AGG | + | chr6_3:25080176-25080195 | None:intergenic | 60.0% |
| GACCTCCGCCTGTGACGCTA+TGG | - | chr6_3:25080128-25080147 | Msa0945840:intron | 65.0% | |
| AGCCATAGCGTCACAGGCGG+AGG | + | chr6_3:25080133-25080152 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 25076771 | 25081460 | 25076771 | ID=Msa0945840;Name=Msa0945840 |
| chr6_3 | mRNA | 25076771 | 25081460 | 25076771 | ID=Msa0945840-mRNA-1;Parent=Msa0945840;Name=Msa0945840-mRNA-1;_AED=0.17;_eAED=0.17;_QI=210|0.57|0.5|0.75|1|1|8|334|244 |
| chr6_3 | exon | 25076771 | 25077222 | 25076771 | ID=Msa0945840-mRNA-1:exon:7116;Parent=Msa0945840-mRNA-1 |
| chr6_3 | exon | 25077358 | 25077508 | 25077358 | ID=Msa0945840-mRNA-1:exon:7115;Parent=Msa0945840-mRNA-1 |
| chr6_3 | exon | 25078007 | 25078058 | 25078007 | ID=Msa0945840-mRNA-1:exon:7114;Parent=Msa0945840-mRNA-1 |
| chr6_3 | exon | 25079339 | 25079477 | 25079339 | ID=Msa0945840-mRNA-1:exon:7113;Parent=Msa0945840-mRNA-1 |
| chr6_3 | exon | 25080443 | 25080564 | 25080443 | ID=Msa0945840-mRNA-1:exon:7112;Parent=Msa0945840-mRNA-1 |
| chr6_3 | exon | 25080658 | 25080690 | 25080658 | ID=Msa0945840-mRNA-1:exon:7111;Parent=Msa0945840-mRNA-1 |
| chr6_3 | exon | 25080813 | 25080894 | 25080813 | ID=Msa0945840-mRNA-1:exon:7110;Parent=Msa0945840-mRNA-1 |
| chr6_3 | exon | 25081213 | 25081460 | 25081213 | ID=Msa0945840-mRNA-1:exon:7109;Parent=Msa0945840-mRNA-1 |
| chr6_3 | five_prime_UTR | 25081251 | 25081460 | 25081251 | ID=Msa0945840-mRNA-1:five_prime_utr;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25081213 | 25081250 | 25081213 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25080813 | 25080894 | 25080813 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25080658 | 25080690 | 25080658 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25080443 | 25080564 | 25080443 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25079339 | 25079477 | 25079339 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25078007 | 25078058 | 25078007 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25077358 | 25077508 | 25077358 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | CDS | 25077105 | 25077222 | 25077105 | ID=Msa0945840-mRNA-1:cds;Parent=Msa0945840-mRNA-1 |
| chr6_3 | three_prime_UTR | 25076771 | 25077104 | 25076771 | ID=Msa0945840-mRNA-1:three_prime_utr;Parent=Msa0945840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
