Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857230 | XP_003617250.1 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 7.19e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857230 | sp|Q6NMM1|GOT1_ARATH | 72.143 | 140 | 39 | 0 | 1 | 140 | 1 | 140 | 8.88e-74 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857230 | B7FGH0 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 3.43e-90 | 267 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741440 | Msa0857230 | 0.818774 | 1.644440e-52 | -8.615850e-47 |
| Msa0822500 | Msa0857230 | 0.802039 | 6.779252e-49 | -8.615850e-47 |
| Msa0857230 | Msa1346840 | 0.801282 | 9.692964e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857230 | MtrunA17_Chr5g0441811 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 6.61e-94 | 267 |
| Msa0857230 | MtrunA17_Chr3g0094381 | 90.000 | 140 | 14 | 0 | 1 | 140 | 1 | 140 | 1.35e-88 | 254 |
| Msa0857230 | MtrunA17_Chr7g0214681 | 50.413 | 121 | 60 | 0 | 2 | 122 | 1 | 121 | 9.16e-33 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857230 | AT3G49420.3 | 85.714 | 140 | 20 | 0 | 1 | 140 | 1 | 140 | 1.19e-84 | 244 |
| Msa0857230 | AT3G49420.1 | 85.714 | 140 | 20 | 0 | 1 | 140 | 1 | 140 | 1.19e-84 | 244 |
| Msa0857230 | AT3G49420.2 | 85.714 | 140 | 20 | 0 | 1 | 140 | 1 | 140 | 1.19e-84 | 244 |
| Msa0857230 | AT5G01430.2 | 85.714 | 140 | 20 | 0 | 1 | 140 | 1 | 140 | 1.19e-84 | 244 |
| Msa0857230 | AT5G01430.1 | 85.714 | 140 | 20 | 0 | 1 | 140 | 1 | 140 | 1.19e-84 | 244 |
| Msa0857230 | AT3G03180.1 | 72.143 | 140 | 39 | 0 | 1 | 140 | 1 | 140 | 9.03e-75 | 219 |
| Msa0857230 | AT3G03180.3 | 71.875 | 128 | 36 | 0 | 1 | 128 | 1 | 128 | 1.03e-66 | 201 |
| Msa0857230 | AT3G03180.2 | 70.588 | 102 | 30 | 0 | 39 | 140 | 1 | 102 | 1.32e-52 | 162 |
| Msa0857230 | AT1G05785.7 | 49.600 | 125 | 63 | 0 | 4 | 128 | 3 | 127 | 5.16e-40 | 132 |
| Msa0857230 | AT1G05785.6 | 49.600 | 125 | 63 | 0 | 4 | 128 | 3 | 127 | 5.16e-40 | 132 |
| Msa0857230 | AT1G05785.1 | 48.800 | 125 | 64 | 0 | 2 | 126 | 1 | 125 | 5.22e-40 | 131 |
| Msa0857230 | AT1G05785.5 | 48.800 | 125 | 64 | 0 | 2 | 126 | 1 | 125 | 5.22e-40 | 131 |
| Msa0857230 | AT1G05785.2 | 48.800 | 125 | 64 | 0 | 2 | 126 | 1 | 125 | 5.22e-40 | 131 |
| Msa0857230 | AT1G05785.4 | 49.194 | 124 | 63 | 0 | 4 | 127 | 3 | 126 | 7.45e-40 | 130 |
| Msa0857230 | AT1G05785.3 | 49.573 | 117 | 59 | 0 | 10 | 126 | 3 | 119 | 2.59e-36 | 121 |
Find 81 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGTTCTTGATTCTCATTT+TGG | 0.178412 | 5_4:+52567065 | Msa0857230:CDS |
| TGGTAGCTAAATATATTATT+GGG | 0.234834 | 5_4:+52564921 | Msa0857230:intron |
| CTACAGAAGATTCCTGTTCT+TGG | 0.248496 | 5_4:+52567255 | Msa0857230:CDS |
| TTGGTAGCTAAATATATTAT+TGG | 0.262903 | 5_4:+52564920 | Msa0857230:intron |
| ATGGGTTCATCGTACTATTC+AGG | 0.273677 | 5_4:+52567121 | Msa0857230:CDS |
| AAAATATAAAACAAATATAC+TGG | 0.283970 | 5_4:-52564126 | None:intergenic |
| TGATATTGTGCAGTGGATTC+TGG | 0.291832 | 5_4:+52567214 | Msa0857230:intron |
| GAGATTGGATTAGGATTAAC+TGG | 0.303542 | 5_4:+52566677 | Msa0857230:intron |
| GGACAATCTCATTTGGTATT+GGG | 0.315840 | 5_4:+52567046 | Msa0857230:CDS |
| AAAATATTAATGAAAGAAAA+AGG | 0.323191 | 5_4:-52568132 | None:intergenic |
| GGGACAATCTCATTTGGTAT+TGG | 0.355467 | 5_4:+52567045 | Msa0857230:CDS |
| TTAACATGATAGTCATTTAG+TGG | 0.363136 | 5_4:+52567801 | Msa0857230:three_prime_UTR |
| CAATTCATACATCAGGAAAA+TGG | 0.367617 | 5_4:-52564067 | None:intergenic |
| ATTATGATTAACCATTGGTT+TGG | 0.367940 | 5_4:+52568257 | Msa0857230:three_prime_UTR |
| TTCACTTCAATTCATACATC+AGG | 0.384769 | 5_4:-52564074 | None:intergenic |
| GTAAAGAAAATACTCTCATA+TGG | 0.385714 | 5_4:+52567724 | Msa0857230:three_prime_UTR |
| TCGTCGGAATTCGGCGGAAA+TGG | 0.394021 | 5_4:-52564187 | None:intergenic |
| GATTGAGAGTTACCGGTGTT+AGG | 0.396645 | 5_4:-52564219 | None:intergenic |
| TTCACTTTACAATATCTAGA+TGG | 0.397109 | 5_4:-52568221 | None:intergenic |
| GGATTAGGATTAACTGGCTT+CGG | 0.400449 | 5_4:+52566683 | Msa0857230:CDS |
| GGCATGATTATTGAGGCATA+TGG | 0.406214 | 5_4:+52567102 | Msa0857230:CDS |
| AGCGTGGCGTCGTCGGAATT+CGG | 0.406345 | 5_4:-52564196 | None:intergenic |
| TGCAATGCAGAGATTGGATT+AGG | 0.413661 | 5_4:+52566668 | Msa0857230:intron |
| TACTAGGGGACAATCTCATT+TGG | 0.414175 | 5_4:+52567039 | Msa0857230:intron |
| TGCTTGGACATCTAAATTGC+TGG | 0.415377 | 5_4:+52565286 | Msa0857230:five_prime_UTR |
| AATAAGGTCCTGTTTGTGTC+TGG | 0.422295 | 5_4:+52566868 | Msa0857230:intron |
| ACCGGAAGTGACGGCGGCGG+TGG | 0.427737 | 5_4:-52564162 | None:intergenic |
| TGGAAATATTCTGTAACTAC+TGG | 0.428365 | 5_4:+52567680 | Msa0857230:three_prime_UTR |
| CAGTTCTTTGACCGCTATAG+AGG | 0.428923 | 5_4:+52567626 | Msa0857230:intron |
| AGGATACTCCAGACACAAAC+AGG | 0.436220 | 5_4:-52566876 | None:intergenic |
| ACCACCGCCGCCGTCACTTC+CGG | 0.436811 | 5_4:+52564161 | Msa0857230:five_prime_UTR |
| TTCTGATGGTAGAAAATGAT+TGG | 0.438838 | 5_4:+52567774 | Msa0857230:three_prime_UTR |
| GGACTTCAGTCCAATGGTTA+AGG | 0.441990 | 5_4:-52566896 | None:intergenic |
| TAGATGGAAATTTGCAACTA+AGG | 0.442879 | 5_4:-52568205 | None:intergenic |
| CTGTGTAACACTGAGATCTT+TGG | 0.445675 | 5_4:+52567660 | Msa0857230:exon |
| TCAATAATCATGCCCAGAAT+AGG | 0.450454 | 5_4:-52567093 | None:intergenic |
| CGACAAGGGATTGCTAGCTA+TGG | 0.453721 | 5_4:+52566742 | Msa0857230:CDS |
| GCAGAAAATCAATTGATCTC+AGG | 0.455865 | 5_4:+52567900 | Msa0857230:three_prime_UTR |
| GCTTGCAAAAGGCGTGTCAA+TGG | 0.471097 | 5_4:-52567938 | None:intergenic |
| AGAAGATTCCTGTTCTTGGT+TGG | 0.471560 | 5_4:+52567259 | Msa0857230:CDS |
| TGCAGAGAAGCCAAAGTGCT+TGG | 0.474594 | 5_4:+52565270 | Msa0857230:intron |
| ATTTAGATGTCCAAGCACTT+TGG | 0.484844 | 5_4:-52565280 | None:intergenic |
| GCATGATTATTGAGGCATAT+GGG | 0.487465 | 5_4:+52567103 | Msa0857230:CDS |
| TGAATGATCCAACCAAGAAC+AGG | 0.491986 | 5_4:-52567267 | None:intergenic |
| ATTGTCTTCTTCTTCGACAA+GGG | 0.497551 | 5_4:+52566728 | Msa0857230:CDS |
| AAAGGAAAATGATGCGGAAA+AGG | 0.502043 | 5_4:+52567824 | Msa0857230:three_prime_UTR |
| ATTATACTCCTACGAATGAA+TGG | 0.504623 | 5_4:-52567968 | None:intergenic |
| AATACTAGTGGAGATGAAAT+CGG | 0.509467 | 5_4:-52568078 | None:intergenic |
| TAAAGAAAATACTCTCATAT+GGG | 0.514245 | 5_4:+52567725 | Msa0857230:three_prime_UTR |
| TGTTAGGAGCGTGGCGTCGT+CGG | 0.518572 | 5_4:-52564203 | None:intergenic |
| CTATGCAATTCTTCATGAAA+CGG | 0.519907 | 5_4:+52566920 | Msa0857230:CDS |
| ATACATACCGATCGGATGAA+TGG | 0.521034 | 5_4:-52567294 | None:intergenic |
| TTGATATTATGATTAACCAT+TGG | 0.524469 | 5_4:+52568252 | Msa0857230:three_prime_UTR |
| ATGGCACCGATGCTTGCAAA+AGG | 0.531425 | 5_4:-52567949 | None:intergenic |
| ATGATAGTCATTTAGTGGAA+AGG | 0.534649 | 5_4:+52567806 | Msa0857230:three_prime_UTR |
| TATTCTGGGCATGATTATTG+AGG | 0.537787 | 5_4:+52567095 | Msa0857230:CDS |
| CTAAGCATTAGAATCAAAAG+AGG | 0.542574 | 5_4:-52567878 | None:intergenic |
| GACAAGGGATTGCTAGCTAT+GGG | 0.542863 | 5_4:+52566743 | Msa0857230:CDS |
| CATAGTGGACTTCAGTCCAA+TGG | 0.554726 | 5_4:-52566902 | None:intergenic |
| TCTGGAGTATCCTTAACCAT+TGG | 0.562272 | 5_4:+52566886 | Msa0857230:CDS |
| TTTCATGAAGAATTGCATAG+TGG | 0.568040 | 5_4:-52566917 | None:intergenic |
| CAGTGGATTCTGGCCTACAT+TGG | 0.568474 | 5_4:+52567224 | Msa0857230:intron |
| CATCGGTGCCATTCATTCGT+AGG | 0.575884 | 5_4:+52567960 | Msa0857230:three_prime_UTR |
| GGTAGCTAAATATATTATTG+GGG | 0.584422 | 5_4:+52564922 | Msa0857230:intron |
| GATTGTCTTCTTCTTCGACA+AGG | 0.595545 | 5_4:+52566727 | Msa0857230:CDS |
| AAATATAAAACAAATATACT+GGG | 0.605134 | 5_4:-52564125 | None:intergenic |
| AATTCGGCGGAAATGGTGAC+CGG | 0.605513 | 5_4:-52564180 | None:intergenic |
| CAAAGATCTCAGTGTTACAC+AGG | 0.608390 | 5_4:-52567659 | None:intergenic |
| GAAATGGTGACCGGAAGTGA+CGG | 0.608596 | 5_4:-52564171 | None:intergenic |
| AGTGACAATATCCAAACCAA+TGG | 0.614296 | 5_4:-52568268 | None:intergenic |
| CGACGCCACGCTCCTAACAC+CGG | 0.620315 | 5_4:+52564207 | Msa0857230:five_prime_UTR |
| TCAACAGCCATTCATCCGAT+CGG | 0.621934 | 5_4:+52567287 | Msa0857230:CDS |
| GTGACCGGAAGTGACGGCGG+CGG | 0.622148 | 5_4:-52564165 | None:intergenic |
| AGTTACCGGTGTTAGGAGCG+TGG | 0.638303 | 5_4:-52564212 | None:intergenic |
| CGAAGAAGAAGACAATCCCA+AGG | 0.650628 | 5_4:-52566721 | None:intergenic |
| GTGGCGTCGTCGGAATTCGG+CGG | 0.656851 | 5_4:-52564193 | None:intergenic |
| TAGTGGAAAGGAAAATGATG+CGG | 0.657849 | 5_4:+52567818 | Msa0857230:three_prime_UTR |
| GAATTGAGATCAACTTCTGA+TGG | 0.671812 | 5_4:+52567760 | Msa0857230:three_prime_UTR |
| ATGGTGACCGGAAGTGACGG+CGG | 0.672688 | 5_4:-52564168 | None:intergenic |
| GGATTAAAAGATAGATGACA+CGG | 0.693466 | 5_4:-52568111 | None:intergenic |
| GCACTCGTTTACCTCTATAG+CGG | 0.745219 | 5_4:-52567637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAAACAAATATACT+GGG | - | chr5_4:52564128-52564147 | None:intergenic | 10.0% |
| !! | AAAATATAAAACAAATATAC+TGG | - | chr5_4:52564129-52564148 | None:intergenic | 10.0% |
| !!! | TAAAAGAATCTATATTTTTT+GGG | + | chr5_4:52564972-52564991 | Msa0857230:intron | 10.0% |
| !! | AAAATATTAATGAAAGAAAA+AGG | - | chr5_4:52568135-52568154 | None:intergenic | 10.0% |
| !!! | GTAATTTGAAATAATTTGAT+AGG | + | chr5_4:52564385-52564404 | Msa0857230:intron | 15.0% |
| !!! | GTAAAAGAATCTATATTTTT+TGG | + | chr5_4:52564971-52564990 | Msa0857230:intron | 15.0% |
| !!! | TTATAATTTTTGTAGTGAAA+AGG | + | chr5_4:52566148-52566167 | Msa0857230:intron | 15.0% |
| !!! | ATTTTTGTACATTACATATT+TGG | + | chr5_4:52566570-52566589 | Msa0857230:intron | 15.0% |
| !!! | TAGACTTTTATTTTCATAAA+AGG | - | chr5_4:52568178-52568197 | None:intergenic | 15.0% |
| !! | AAGTGAATTCAAAAATGAAA+AGG | - | chr5_4:52564297-52564316 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGTGTGAGTTTTA+CGG | + | chr5_4:52564462-52564481 | Msa0857230:intron | 20.0% |
| !! | AATATGATCTCATAGTTTAT+GGG | + | chr5_4:52564735-52564754 | Msa0857230:intron | 20.0% |
| !! | AAATACATTTATCAAACAAG+TGG | + | chr5_4:52564848-52564867 | Msa0857230:intron | 20.0% |
| !!! | TTGGTAGCTAAATATATTAT+TGG | + | chr5_4:52564920-52564939 | Msa0857230:intron | 20.0% |
| !! | TGGTAGCTAAATATATTATT+GGG | + | chr5_4:52564921-52564940 | Msa0857230:intron | 20.0% |
| !!! | TTTTATTCCACTTACTTTTT+CGG | - | chr5_4:52565339-52565358 | None:intergenic | 20.0% |
| !! | AGAATAAGATCACTAATTTA+TGG | - | chr5_4:52565469-52565488 | None:intergenic | 20.0% |
| !! | AGTATAAACATTCTACAAAA+TGG | - | chr5_4:52565674-52565693 | None:intergenic | 20.0% |
| !! | ATACTTTGTAAAGTCATTAT+TGG | + | chr5_4:52565689-52565708 | Msa0857230:intron | 20.0% |
| !! | ACAATAAGCAATTAGATTAT+TGG | - | chr5_4:52566345-52566364 | None:intergenic | 20.0% |
| !! | AACTATATCACGTTATAAAT+AGG | - | chr5_4:52566465-52566484 | None:intergenic | 20.0% |
| !! | TAAAAAAGTAAAAGGTAAGT+GGG | - | chr5_4:52567021-52567040 | None:intergenic | 20.0% |
| !!! | TTACCTTTTACTTTTTTACT+AGG | + | chr5_4:52567023-52567042 | Msa0857230:intron | 20.0% |
| !!! | TACCTTTTACTTTTTTACTA+GGG | + | chr5_4:52567024-52567043 | Msa0857230:intron | 20.0% |
| !! | AGATTCAGTTTATAAATTTC+AGG | - | chr5_4:52567586-52567605 | None:intergenic | 20.0% |
| !! | TAAAGAAAATACTCTCATAT+GGG | + | chr5_4:52567725-52567744 | Msa0857230:three_prime_UTR | 20.0% |
| !! | TTGATATTATGATTAACCAT+TGG | + | chr5_4:52568252-52568271 | Msa0857230:three_prime_UTR | 20.0% |
| !! | TTGCTTTAAATGTTCATTTC+TGG | + | chr5_4:52564350-52564369 | Msa0857230:intron | 25.0% |
| !!! | AACTTCATTTCTCGTTTTTT+AGG | + | chr5_4:52564434-52564453 | Msa0857230:intron | 25.0% |
| !!! | ACTTCATTTCTCGTTTTTTA+GGG | + | chr5_4:52564435-52564454 | Msa0857230:intron | 25.0% |
| ! | ATCATACAAAAAAACACCAA+AGG | - | chr5_4:52564513-52564532 | None:intergenic | 25.0% |
| !!! | AAAATACACTTTACTTTTCG+TGG | + | chr5_4:52564542-52564561 | Msa0857230:intron | 25.0% |
| ! | AACAAACTTTCAGAAAATCA+TGG | + | chr5_4:52564576-52564595 | Msa0857230:intron | 25.0% |
| ! | ACAAACTTTCAGAAAATCAT+GGG | + | chr5_4:52564577-52564596 | Msa0857230:intron | 25.0% |
| ! | AAAAGGATATGAGGTTAAAT+TGG | + | chr5_4:52564623-52564642 | Msa0857230:intron | 25.0% |
| ! | AGAAAGTTACAAAAGTTTCT+AGG | - | chr5_4:52564668-52564687 | None:intergenic | 25.0% |
| ! | GAATATGATCTCATAGTTTA+TGG | + | chr5_4:52564734-52564753 | Msa0857230:intron | 25.0% |
| ! | TGTCAAAAACAAGAAGAAAT+AGG | - | chr5_4:52564889-52564908 | None:intergenic | 25.0% |
| !! | TTTTGACAGATAAACTCATT+TGG | + | chr5_4:52564901-52564920 | Msa0857230:intron | 25.0% |
| ! | GGTAGCTAAATATATTATTG+GGG | + | chr5_4:52564922-52564941 | Msa0857230:intron | 25.0% |
| ! | TATTTCTTGGGATTTCTTAA+TGG | + | chr5_4:52565595-52565614 | Msa0857230:intron | 25.0% |
| ! | ATGTGCATATTAAATAACCA+AGG | - | chr5_4:52565732-52565751 | None:intergenic | 25.0% |
| ! | TTATTTAATATGCACATACC+TGG | + | chr5_4:52565735-52565754 | Msa0857230:intron | 25.0% |
| !!! | ATAGAAGTACTATGAAATAG+AGG | + | chr5_4:52566037-52566056 | Msa0857230:intron | 25.0% |
| !!! | TCATCATGTTGATTTTCTTT+AGG | + | chr5_4:52566391-52566410 | Msa0857230:intron | 25.0% |
| ! | ATTTAGTCAAAACAATGCTT+CGG | - | chr5_4:52566538-52566557 | None:intergenic | 25.0% |
| !! | GTATATTTTTCTCTTTCCTT+GGG | + | chr5_4:52566705-52566724 | Msa0857230:CDS | 25.0% |
| ! | ATCTTTATGTTGCTCAAATA+AGG | + | chr5_4:52566852-52566871 | Msa0857230:intron | 25.0% |
| ! | GTAAAAAAGTAAAAGGTAAG+TGG | - | chr5_4:52567022-52567041 | None:intergenic | 25.0% |
| !!! | ACCTTTTACTTTTTTACTAG+GGG | + | chr5_4:52567025-52567044 | Msa0857230:intron | 25.0% |
| ! | AATATGCTATAAGCTAATGA+TGG | + | chr5_4:52567190-52567209 | Msa0857230:intron | 25.0% |
| ! | TCAATAGTAGTAAATGTGTA+AGG | - | chr5_4:52567371-52567390 | None:intergenic | 25.0% |
| !! | AGGAACATTGATTATTGATA+TGG | - | chr5_4:52567399-52567418 | None:intergenic | 25.0% |
| ! | TGAAGAATGGAAAAAGATTT+AGG | + | chr5_4:52567525-52567544 | Msa0857230:intron | 25.0% |
| ! | GTAAAGAAAATACTCTCATA+TGG | + | chr5_4:52567724-52567743 | Msa0857230:three_prime_UTR | 25.0% |
| ! | TTAACATGATAGTCATTTAG+TGG | + | chr5_4:52567801-52567820 | Msa0857230:three_prime_UTR | 25.0% |
| ! | TTCACTTTACAATATCTAGA+TGG | - | chr5_4:52568224-52568243 | None:intergenic | 25.0% |
| !! | ATTATGATTAACCATTGGTT+TGG | + | chr5_4:52568257-52568276 | Msa0857230:three_prime_UTR | 25.0% |
| CAATTCATACATCAGGAAAA+TGG | - | chr5_4:52564070-52564089 | None:intergenic | 30.0% | |
| TTCACTTCAATTCATACATC+AGG | - | chr5_4:52564077-52564096 | None:intergenic | 30.0% | |
| AGAAATAGATTGAGAGTTAC+CGG | - | chr5_4:52564229-52564248 | None:intergenic | 30.0% | |
| ! | AGTTTCTAGGTAATTTGTAC+CGG | - | chr5_4:52564655-52564674 | None:intergenic | 30.0% |
| ! | TTCGTTGTTGCTTAAAAGAT+TGG | + | chr5_4:52564806-52564825 | Msa0857230:intron | 30.0% |
| TCAAACAAGTGGATATTTGT+TGG | + | chr5_4:52564859-52564878 | Msa0857230:intron | 30.0% | |
| CTCATTCATGTATTAACTGT+TGG | + | chr5_4:52565236-52565255 | Msa0857230:intron | 30.0% | |
| !! | ATGCAGTTATTTTGTGCAAT+AGG | + | chr5_4:52565491-52565510 | Msa0857230:intron | 30.0% |
| !! | CATCTATTTTCTATTAGCCT+TGG | + | chr5_4:52565712-52565731 | Msa0857230:intron | 30.0% |
| ! | CCTTTTGTAAAAACAAGGTA+AGG | - | chr5_4:52565921-52565940 | None:intergenic | 30.0% |
| !!! | CCTTACCTTGTTTTTACAAA+AGG | + | chr5_4:52565918-52565937 | Msa0857230:intron | 30.0% |
| ! | ATCAGCCTTTTGTAAAAACA+AGG | - | chr5_4:52565926-52565945 | None:intergenic | 30.0% |
| TCACTGTTAAGTTATAAGAG+TGG | - | chr5_4:52566128-52566147 | None:intergenic | 30.0% | |
| ATTTGATTCTTGTAGCATGT+CGG | + | chr5_4:52566249-52566268 | Msa0857230:intron | 30.0% | |
| ! | AGATTTCCATTAGCTTCATT+AGG | - | chr5_4:52566321-52566340 | None:intergenic | 30.0% |
| CATTGAGATATGATTGTGTA+TGG | - | chr5_4:52566369-52566388 | None:intergenic | 30.0% | |
| !! | GTTGATTTTCTTTAGGTTCT+TGG | + | chr5_4:52566398-52566417 | Msa0857230:intron | 30.0% |
| ! | ATTTTACTGCCTTTATGCTA+TGG | + | chr5_4:52566494-52566513 | Msa0857230:intron | 30.0% |
| TTTAGTCAAAACAATGCTTC+GGG | - | chr5_4:52566537-52566556 | None:intergenic | 30.0% | |
| ! | GGTATATTTTTCTCTTTCCT+TGG | + | chr5_4:52566704-52566723 | Msa0857230:CDS | 30.0% |
| !!! | TAACATCTATTTTAATGCCC+TGG | + | chr5_4:52566828-52566847 | Msa0857230:intron | 30.0% |
| TTTCATGAAGAATTGCATAG+TGG | - | chr5_4:52566920-52566939 | None:intergenic | 30.0% | |
| CTATGCAATTCTTCATGAAA+CGG | + | chr5_4:52566920-52566939 | Msa0857230:CDS | 30.0% | |
| ! | CATGAAACGGAGTAATTTTA+AGG | + | chr5_4:52566933-52566952 | Msa0857230:CDS | 30.0% |
| AACAAGCAGTAAACTGATAA+TGG | - | chr5_4:52566964-52566983 | None:intergenic | 30.0% | |
| TCCCCTAGTAAAAAAGTAAA+AGG | - | chr5_4:52567029-52567048 | None:intergenic | 30.0% | |
| ACTTTCACAATACTGAAGAA+TGG | + | chr5_4:52567512-52567531 | Msa0857230:intron | 30.0% | |
| TGGAAATATTCTGTAACTAC+TGG | + | chr5_4:52567680-52567699 | Msa0857230:three_prime_UTR | 30.0% | |
| TTCTGATGGTAGAAAATGAT+TGG | + | chr5_4:52567774-52567793 | Msa0857230:three_prime_UTR | 30.0% | |
| ATGATAGTCATTTAGTGGAA+AGG | + | chr5_4:52567806-52567825 | Msa0857230:three_prime_UTR | 30.0% | |
| ! | TTTTCACTTTGCTACTAGTT+TGG | + | chr5_4:52567855-52567874 | Msa0857230:three_prime_UTR | 30.0% |
| CTAAGCATTAGAATCAAAAG+AGG | - | chr5_4:52567881-52567900 | None:intergenic | 30.0% | |
| ATTATACTCCTACGAATGAA+TGG | - | chr5_4:52567971-52567990 | None:intergenic | 30.0% | |
| AATACTAGTGGAGATGAAAT+CGG | - | chr5_4:52568081-52568100 | None:intergenic | 30.0% | |
| GGATTAAAAGATAGATGACA+CGG | - | chr5_4:52568114-52568133 | None:intergenic | 30.0% | |
| TAGATGGAAATTTGCAACTA+AGG | - | chr5_4:52568208-52568227 | None:intergenic | 30.0% | |
| ! | TTTAAGATAAGATCTCACCG+CGG | + | chr5_4:52564266-52564285 | Msa0857230:intron | 35.0% |
| AAATCATGGGTAGTTGAGTT+AGG | + | chr5_4:52564590-52564609 | Msa0857230:intron | 35.0% | |
| AGTTAGGAACCATACGAAAA+AGG | + | chr5_4:52564606-52564625 | Msa0857230:intron | 35.0% | |
| ACCATACGAAAAAGGATATG+AGG | + | chr5_4:52564614-52564633 | Msa0857230:intron | 35.0% | |
| !! | ACCTCATATCCTTTTTCGTA+TGG | - | chr5_4:52564618-52564637 | None:intergenic | 35.0% |
| ATGATCTCATAGTTTATGGG+TGG | + | chr5_4:52564738-52564757 | Msa0857230:intron | 35.0% | |
| AGAATTGTGCTTTGCTCATT+AGG | + | chr5_4:52564775-52564794 | Msa0857230:intron | 35.0% | |
| ACGAAGCAATGAGTGTTAAT+GGG | - | chr5_4:52565011-52565030 | None:intergenic | 35.0% | |
| !!! | CCTAGGATATTTTTTTCCCT+CGG | + | chr5_4:52565038-52565057 | Msa0857230:intron | 35.0% |
| TAAGTGCATGTTTGGTATCA+CGG | + | chr5_4:52565063-52565082 | Msa0857230:intron | 35.0% | |
| ATTTAGATGTCCAAGCACTT+TGG | - | chr5_4:52565283-52565302 | None:intergenic | 35.0% | |
| TTACTTGTGTGTGTAGAAGA+AGG | + | chr5_4:52565418-52565437 | Msa0857230:intron | 35.0% | |
| AAATCCCAAGAAATACGCAA+AGG | - | chr5_4:52565590-52565609 | None:intergenic | 35.0% | |
| TTTACGCGAAATGTGAAGAA+AGG | + | chr5_4:52565828-52565847 | Msa0857230:intron | 35.0% | |
| AAATGTGAAGAAAGGAAGGA+AGG | + | chr5_4:52565836-52565855 | Msa0857230:intron | 35.0% | |
| CTCACTGCATGATCTATAAT+AGG | + | chr5_4:52565892-52565911 | Msa0857230:intron | 35.0% | |
| AGCATAAACCTATAACGTCT+GGG | + | chr5_4:52565951-52565970 | Msa0857230:intron | 35.0% | |
| AAATCAACAACTAAAAGCCG+TGG | - | chr5_4:52566275-52566294 | None:intergenic | 35.0% | |
| !! | GATTTTCTTTAGGTTCTTGG+TGG | + | chr5_4:52566401-52566420 | Msa0857230:intron | 35.0% |
| ATGATGAGACCATAGCATAA+AGG | - | chr5_4:52566506-52566525 | None:intergenic | 35.0% | |
| ! | GAGATTGGATTAGGATTAAC+TGG | + | chr5_4:52566677-52566696 | Msa0857230:intron | 35.0% |
| ATTGTCTTCTTCTTCGACAA+GGG | + | chr5_4:52566728-52566747 | Msa0857230:CDS | 35.0% | |
| TGAGCAACATAAAGATACCA+GGG | - | chr5_4:52566848-52566867 | None:intergenic | 35.0% | |
| TTGAGCAACATAAAGATACC+AGG | - | chr5_4:52566849-52566868 | None:intergenic | 35.0% | |
| TAAGTGGGAGTTATTTACCA+TGG | - | chr5_4:52567006-52567025 | None:intergenic | 35.0% | |
| GGACAATCTCATTTGGTATT+GGG | + | chr5_4:52567046-52567065 | Msa0857230:CDS | 35.0% | |
| ! | TGGGTTCTTGATTCTCATTT+TGG | + | chr5_4:52567065-52567084 | Msa0857230:CDS | 35.0% |
| ! | GGGTTCTTGATTCTCATTTT+GGG | + | chr5_4:52567066-52567085 | Msa0857230:CDS | 35.0% |
| !! | TCTTGATTCTCATTTTGGGA+TGG | + | chr5_4:52567070-52567089 | Msa0857230:CDS | 35.0% |
| TCAATAATCATGCCCAGAAT+AGG | - | chr5_4:52567096-52567115 | None:intergenic | 35.0% | |
| TATTCTGGGCATGATTATTG+AGG | + | chr5_4:52567095-52567114 | Msa0857230:CDS | 35.0% | |
| GCATGATTATTGAGGCATAT+GGG | + | chr5_4:52567103-52567122 | Msa0857230:CDS | 35.0% | |
| ! | ATCGTACTATTCAGGTTTAG+TGG | + | chr5_4:52567129-52567148 | Msa0857230:intron | 35.0% |
| TGTAGAAAAACAGCCAATGT+AGG | - | chr5_4:52567240-52567259 | None:intergenic | 35.0% | |
| TATCGCAAATACATACCGAT+CGG | - | chr5_4:52567305-52567324 | None:intergenic | 35.0% | |
| CAGTATTGTGAAAGTTTAGC+AGG | - | chr5_4:52567507-52567526 | None:intergenic | 35.0% | |
| GAATTGAGATCAACTTCTGA+TGG | + | chr5_4:52567760-52567779 | Msa0857230:three_prime_UTR | 35.0% | |
| TAGTGGAAAGGAAAATGATG+CGG | + | chr5_4:52567818-52567837 | Msa0857230:three_prime_UTR | 35.0% | |
| AAAGGAAAATGATGCGGAAA+AGG | + | chr5_4:52567824-52567843 | Msa0857230:three_prime_UTR | 35.0% | |
| GCAGAAAATCAATTGATCTC+AGG | + | chr5_4:52567900-52567919 | Msa0857230:three_prime_UTR | 35.0% | |
| GGTCAAAAAGACAATACTAG+TGG | - | chr5_4:52568093-52568112 | None:intergenic | 35.0% | |
| AAAATGAAAAGGCGAAACCG+CGG | - | chr5_4:52564286-52564305 | None:intergenic | 40.0% | |
| !! | GTTTTACGGTACTGAATTGC+AGG | + | chr5_4:52564476-52564495 | Msa0857230:intron | 40.0% |
| !! | GAGGTTAAATTGGTGTTGAC+CGG | + | chr5_4:52564633-52564652 | Msa0857230:intron | 40.0% |
| CGAAGCAATGAGTGTTAATG+GGG | - | chr5_4:52565010-52565029 | None:intergenic | 40.0% | |
| GACGAAGCAATGAGTGTTAA+TGG | - | chr5_4:52565012-52565031 | None:intergenic | 40.0% | |
| CCGAGGGAAAAAAATATCCT+AGG | - | chr5_4:52565041-52565060 | None:intergenic | 40.0% | |
| CAAACATGCACTTAATCCGA+GGG | - | chr5_4:52565057-52565076 | None:intergenic | 40.0% | |
| TGGGTTTGCCAAAATCATGA+TGG | + | chr5_4:52565086-52565105 | Msa0857230:intron | 40.0% | |
| ! | ACAGTGAGCCATCATGATTT+TGG | - | chr5_4:52565097-52565116 | None:intergenic | 40.0% |
| ATGATGGCTCACTGTGATTA+TGG | + | chr5_4:52565102-52565121 | Msa0857230:intron | 40.0% | |
| TCCACTGTGACACTAAAGTT+TGG | + | chr5_4:52565128-52565147 | Msa0857230:intron | 40.0% | |
| ACCAAACTTTAGTGTCACAG+TGG | - | chr5_4:52565132-52565151 | None:intergenic | 40.0% | |
| GAGAAAATCTTGTGCGTGTT+AGG | - | chr5_4:52565157-52565176 | None:intergenic | 40.0% | |
| ! | ACGCACAAGATTTTCTCATC+AGG | + | chr5_4:52565160-52565179 | Msa0857230:intron | 40.0% |
| ! | CACAAGATTTTCTCATCAGG+TGG | + | chr5_4:52565163-52565182 | Msa0857230:intron | 40.0% |
| TGCTTGGACATCTAAATTGC+TGG | + | chr5_4:52565286-52565305 | Msa0857230:five_prime_UTR | 40.0% | |
| ! | TTTTCGGTCGTTCATCTCAA+AGG | - | chr5_4:52565323-52565342 | None:intergenic | 40.0% |
| TGAACGACCGAAAAAGTAAG+TGG | + | chr5_4:52565329-52565348 | Msa0857230:intron | 40.0% | |
| AATACGCAAAGGTAGGGAAA+AGG | - | chr5_4:52565579-52565598 | None:intergenic | 40.0% | |
| CCAAGAAATACGCAAAGGTA+GGG | - | chr5_4:52565585-52565604 | None:intergenic | 40.0% | |
| CCTACCTTTGCGTATTTCTT+GGG | + | chr5_4:52565583-52565602 | Msa0857230:intron | 40.0% | |
| CATTCTACAAAATGGAGCAC+TGG | - | chr5_4:52565666-52565685 | None:intergenic | 40.0% | |
| CACACAATGTTGCATAACGA+AGG | - | chr5_4:52565779-52565798 | None:intergenic | 40.0% | |
| ATCTCTTGCCAATACACTCA+AGG | - | chr5_4:52565809-52565828 | None:intergenic | 40.0% | |
| GAAGGAAGGAAGAGACAAAA+GGG | + | chr5_4:52565850-52565869 | Msa0857230:intron | 40.0% | |
| AAGGAAGAGACAAAAGGGAT+AGG | + | chr5_4:52565855-52565874 | Msa0857230:intron | 40.0% | |
| AAGAGACAAAAGGGATAGGA+CGG | + | chr5_4:52565859-52565878 | Msa0857230:intron | 40.0% | |
| GACGTTATAGGTTTATGCTG+TGG | - | chr5_4:52565950-52565969 | None:intergenic | 40.0% | |
| CAGCATAAACCTATAACGTC+TGG | + | chr5_4:52565950-52565969 | Msa0857230:intron | 40.0% | |
| ! | TTGGTGTCTACTCCAAACTT+TGG | + | chr5_4:52565978-52565997 | Msa0857230:intron | 40.0% |
| TGGTGTCTACTCCAAACTTT+GGG | + | chr5_4:52565979-52565998 | Msa0857230:intron | 40.0% | |
| !! | AGCTTCTTGCTTTAAGACTC+TGG | - | chr5_4:52566084-52566103 | None:intergenic | 40.0% |
| ! | CCATTAGCTTCATTAGGTGA+TGG | - | chr5_4:52566315-52566334 | None:intergenic | 40.0% |
| CCATCACCTAATGAAGCTAA+TGG | + | chr5_4:52566312-52566331 | Msa0857230:intron | 40.0% | |
| ATGCTATGGTCTCATCATAC+TGG | + | chr5_4:52566508-52566527 | Msa0857230:intron | 40.0% | |
| TGCAATGCAGAGATTGGATT+AGG | + | chr5_4:52566668-52566687 | Msa0857230:intron | 40.0% | |
| ! | GGATTAGGATTAACTGGCTT+CGG | + | chr5_4:52566683-52566702 | Msa0857230:CDS | 40.0% |
| GATTGTCTTCTTCTTCGACA+AGG | + | chr5_4:52566727-52566746 | Msa0857230:CDS | 40.0% | |
| AATAAGGTCCTGTTTGTGTC+TGG | + | chr5_4:52566868-52566887 | Msa0857230:intron | 40.0% | |
| ! | TCTGGAGTATCCTTAACCAT+TGG | + | chr5_4:52566886-52566905 | Msa0857230:CDS | 40.0% |
| ACTTTCTGTCTTGTACTCCA+TGG | + | chr5_4:52566986-52567005 | Msa0857230:intron | 40.0% | |
| TACTAGGGGACAATCTCATT+TGG | + | chr5_4:52567039-52567058 | Msa0857230:intron | 40.0% | |
| GGGACAATCTCATTTGGTAT+TGG | + | chr5_4:52567045-52567064 | Msa0857230:CDS | 40.0% | |
| !!! | ATTTTGGGATGGCCTATTCT+GGG | + | chr5_4:52567081-52567100 | Msa0857230:CDS | 40.0% |
| GGCATGATTATTGAGGCATA+TGG | + | chr5_4:52567102-52567121 | Msa0857230:CDS | 40.0% | |
| ATGGGTTCATCGTACTATTC+AGG | + | chr5_4:52567121-52567140 | Msa0857230:CDS | 40.0% | |
| ! | TGATGGATGATATTGTGCAG+TGG | + | chr5_4:52567207-52567226 | Msa0857230:intron | 40.0% |
| ! | TGATATTGTGCAGTGGATTC+TGG | + | chr5_4:52567214-52567233 | Msa0857230:intron | 40.0% |
| CTACAGAAGATTCCTGTTCT+TGG | + | chr5_4:52567255-52567274 | Msa0857230:CDS | 40.0% | |
| AGAAGATTCCTGTTCTTGGT+TGG | + | chr5_4:52567259-52567278 | Msa0857230:CDS | 40.0% | |
| TGAATGATCCAACCAAGAAC+AGG | - | chr5_4:52567270-52567289 | None:intergenic | 40.0% | |
| ATACATACCGATCGGATGAA+TGG | - | chr5_4:52567297-52567316 | None:intergenic | 40.0% | |
| TCAGCGAAGATTTAGTTGGA+AGG | - | chr5_4:52567344-52567363 | None:intergenic | 40.0% | |
| TGCTTCAGCGAAGATTTAGT+TGG | - | chr5_4:52567348-52567367 | None:intergenic | 40.0% | |
| CCAGAATCACTAAGGATTTC+AGG | - | chr5_4:52567419-52567438 | None:intergenic | 40.0% | |
| CCTGAAATCCTTAGTGATTC+TGG | + | chr5_4:52567416-52567435 | Msa0857230:intron | 40.0% | |
| AGAATCGACCAGAATCACTA+AGG | - | chr5_4:52567427-52567446 | None:intergenic | 40.0% | |
| CAAAGATCTCAGTGTTACAC+AGG | - | chr5_4:52567662-52567681 | None:intergenic | 40.0% | |
| CTGTGTAACACTGAGATCTT+TGG | + | chr5_4:52567660-52567679 | Msa0857230:exon | 40.0% | |
| GATTGAGAGTTACCGGTGTT+AGG | - | chr5_4:52564222-52564241 | None:intergenic | 45.0% | |
| ! | CGGTACTGAATTGCAGGTTA+AGG | + | chr5_4:52564482-52564501 | Msa0857230:intron | 45.0% |
| GCAGGTTAAGGACTAACCTT+TGG | + | chr5_4:52564494-52564513 | Msa0857230:intron | 45.0% | |
| GAGTGTTAATGGGGTAGCTT+TGG | - | chr5_4:52565001-52565020 | None:intergenic | 45.0% | |
| CCAAACATGCACTTAATCCG+AGG | - | chr5_4:52565058-52565077 | None:intergenic | 45.0% | |
| CCTCGGATTAAGTGCATGTT+TGG | + | chr5_4:52565055-52565074 | Msa0857230:intron | 45.0% | |
| TGCATGTTTGGTATCACGGT+GGG | + | chr5_4:52565067-52565086 | Msa0857230:intron | 45.0% | |
| CCCTACCTTTGCGTATTTCT+TGG | + | chr5_4:52565582-52565601 | Msa0857230:intron | 45.0% | |
| CCCAAGAAATACGCAAAGGT+AGG | - | chr5_4:52565586-52565605 | None:intergenic | 45.0% | |
| AACGCAAAGAGATGGTAACC+AGG | - | chr5_4:52565756-52565775 | None:intergenic | 45.0% | |
| AACGAAGGAACGCAAAGAGA+TGG | - | chr5_4:52565764-52565783 | None:intergenic | 45.0% | |
| CGCGAAATGTGAAGAAAGGA+AGG | + | chr5_4:52565832-52565851 | Msa0857230:intron | 45.0% | |
| GGAAGGAAGGAAGAGACAAA+AGG | + | chr5_4:52565849-52565868 | Msa0857230:intron | 45.0% | |
| AGAGACAAAAGGGATAGGAC+GGG | + | chr5_4:52565860-52565879 | Msa0857230:intron | 45.0% | |
| AAGGGATAGGACGGGAAAAT+TGG | + | chr5_4:52565868-52565887 | Msa0857230:intron | 45.0% | |
| AAACTTTGGGCCAAGGCATA+GGG | + | chr5_4:52565992-52566011 | Msa0857230:intron | 45.0% | |
| ACAAAATTCCCCCTATGCCT+TGG | - | chr5_4:52566005-52566024 | None:intergenic | 45.0% | |
| AGTCAAAACAATGCTTCGGG+CGG | - | chr5_4:52566534-52566553 | None:intergenic | 45.0% | |
| TTGGCATGCAATGCAGAGAT+TGG | + | chr5_4:52566662-52566681 | Msa0857230:intron | 45.0% | |
| CGAAGAAGAAGACAATCCCA+AGG | - | chr5_4:52566724-52566743 | None:intergenic | 45.0% | |
| GACAAGGGATTGCTAGCTAT+GGG | + | chr5_4:52566743-52566762 | Msa0857230:CDS | 45.0% | |
| AGGATACTCCAGACACAAAC+AGG | - | chr5_4:52566879-52566898 | None:intergenic | 45.0% | |
| GGACTTCAGTCCAATGGTTA+AGG | - | chr5_4:52566899-52566918 | None:intergenic | 45.0% | |
| !! | CATAGTGGACTTCAGTCCAA+TGG | - | chr5_4:52566905-52566924 | None:intergenic | 45.0% |
| !!! | CATTTTGGGATGGCCTATTC+TGG | + | chr5_4:52567080-52567099 | Msa0857230:CDS | 45.0% |
| TCAACAGCCATTCATCCGAT+CGG | + | chr5_4:52567287-52567306 | Msa0857230:CDS | 45.0% | |
| CAGTTCTTTGACCGCTATAG+AGG | + | chr5_4:52567626-52567645 | Msa0857230:intron | 45.0% | |
| GCACTCGTTTACCTCTATAG+CGG | - | chr5_4:52567640-52567659 | None:intergenic | 45.0% | |
| !! | TTATATTTAATATATGTAAT+TGG | + | chr5_4:52566643-52566662 | Msa0857230:intron | 5.0% |
| GAAATGGTGACCGGAAGTGA+CGG | - | chr5_4:52564174-52564193 | None:intergenic | 50.0% | |
| AATTCGGCGGAAATGGTGAC+CGG | - | chr5_4:52564183-52564202 | None:intergenic | 50.0% | |
| ATTGCTTCGTCTCTGCTCCT+AGG | + | chr5_4:52565021-52565040 | Msa0857230:intron | 50.0% | |
| GTGCATGTTTGGTATCACGG+TGG | + | chr5_4:52565066-52565085 | Msa0857230:intron | 50.0% | |
| ! | TGCAGAGAAGCCAAAGTGCT+TGG | + | chr5_4:52565270-52565289 | Msa0857230:intron | 50.0% |
| GTCCAGTGCCTTGAGTGTAT+TGG | + | chr5_4:52565798-52565817 | Msa0857230:intron | 50.0% | |
| TGCCAATACACTCAAGGCAC+TGG | - | chr5_4:52565803-52565822 | None:intergenic | 50.0% | |
| CCAAGTGACCCAGACGTTAT+AGG | - | chr5_4:52565962-52565981 | None:intergenic | 50.0% | |
| CCTATAACGTCTGGGTCACT+TGG | + | chr5_4:52565959-52565978 | Msa0857230:intron | 50.0% | |
| CTACTCCAAACTTTGGGCCA+AGG | + | chr5_4:52565985-52566004 | Msa0857230:intron | 50.0% | |
| CTATGCCTTGGCCCAAAGTT+TGG | - | chr5_4:52565993-52566012 | None:intergenic | 50.0% | |
| CAAACTTTGGGCCAAGGCAT+AGG | + | chr5_4:52565991-52566010 | Msa0857230:intron | 50.0% | |
| AACTTTGGGCCAAGGCATAG+GGG | + | chr5_4:52565993-52566012 | Msa0857230:intron | 50.0% | |
| TTCTTGTAGCATGTCGGCCA+CGG | + | chr5_4:52566255-52566274 | Msa0857230:intron | 50.0% | |
| CGACAAGGGATTGCTAGCTA+TGG | + | chr5_4:52566742-52566761 | Msa0857230:CDS | 50.0% | |
| ! | CAGTGGATTCTGGCCTACAT+TGG | + | chr5_4:52567224-52567243 | Msa0857230:intron | 50.0% |
| AGCGGTCAAAGAACTGCAAG+TGG | - | chr5_4:52567622-52567641 | None:intergenic | 50.0% | |
| ! | GCTTGCAAAAGGCGTGTCAA+TGG | - | chr5_4:52567941-52567960 | None:intergenic | 50.0% |
| ! | GACACGCCTTTTGCAAGCAT+CGG | + | chr5_4:52567943-52567962 | Msa0857230:three_prime_UTR | 50.0% |
| !! | ATGGCACCGATGCTTGCAAA+AGG | - | chr5_4:52567952-52567971 | None:intergenic | 50.0% |
| !! | CATCGGTGCCATTCATTCGT+AGG | + | chr5_4:52567960-52567979 | Msa0857230:three_prime_UTR | 50.0% |
| TCGTCGGAATTCGGCGGAAA+TGG | - | chr5_4:52564190-52564209 | None:intergenic | 55.0% | |
| ! | AGTTACCGGTGTTAGGAGCG+TGG | - | chr5_4:52564215-52564234 | None:intergenic | 55.0% |
| ACTTTGGGCCAAGGCATAGG+GGG | + | chr5_4:52565994-52566013 | Msa0857230:intron | 55.0% | |
| ATGGTGACCGGAAGTGACGG+CGG | - | chr5_4:52564171-52564190 | None:intergenic | 60.0% | |
| AGCGTGGCGTCGTCGGAATT+CGG | - | chr5_4:52564199-52564218 | None:intergenic | 60.0% | |
| ! | TGTTAGGAGCGTGGCGTCGT+CGG | - | chr5_4:52564206-52564225 | None:intergenic | 60.0% |
| GTGGCGTCGTCGGAATTCGG+CGG | - | chr5_4:52564196-52564215 | None:intergenic | 65.0% | |
| CGACGCCACGCTCCTAACAC+CGG | + | chr5_4:52564207-52564226 | Msa0857230:five_prime_UTR | 65.0% | |
| ACCACCGCCGCCGTCACTTC+CGG | + | chr5_4:52564161-52564180 | Msa0857230:five_prime_UTR | 70.0% | |
| GTGACCGGAAGTGACGGCGG+CGG | - | chr5_4:52564168-52564187 | None:intergenic | 70.0% | |
| ACCGGAAGTGACGGCGGCGG+TGG | - | chr5_4:52564165-52564184 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 52564001 | 52568286 | 52564001 | ID=Msa0857230;Name=Msa0857230 |
| chr5_4 | mRNA | 52564001 | 52568286 | 52564001 | ID=Msa0857230-mRNA-1;Parent=Msa0857230;Name=Msa0857230-mRNA-1;_AED=0.21;_eAED=0.21;_QI=310|1|1|1|0.71|0.62|8|619|140 |
| chr5_4 | exon | 52564001 | 52564228 | 52564001 | ID=Msa0857230-mRNA-1:exon:16419;Parent=Msa0857230-mRNA-1 |
| chr5_4 | exon | 52564927 | 52564970 | 52564927 | ID=Msa0857230-mRNA-1:exon:16420;Parent=Msa0857230-mRNA-1 |
| chr5_4 | exon | 52565275 | 52565343 | 52565275 | ID=Msa0857230-mRNA-1:exon:16421;Parent=Msa0857230-mRNA-1 |
| chr5_4 | exon | 52566678 | 52566769 | 52566678 | ID=Msa0857230-mRNA-1:exon:16422;Parent=Msa0857230-mRNA-1 |
| chr5_4 | exon | 52566874 | 52566954 | 52566874 | ID=Msa0857230-mRNA-1:exon:16423;Parent=Msa0857230-mRNA-1 |
| chr5_4 | exon | 52567045 | 52567142 | 52567045 | ID=Msa0857230-mRNA-1:exon:16424;Parent=Msa0857230-mRNA-1 |
| chr5_4 | exon | 52567227 | 52567308 | 52567227 | ID=Msa0857230-mRNA-1:exon:16425;Parent=Msa0857230-mRNA-1 |
| chr5_4 | exon | 52567629 | 52568286 | 52567629 | ID=Msa0857230-mRNA-1:exon:16426;Parent=Msa0857230-mRNA-1 |
| chr5_4 | five_prime_UTR | 52564001 | 52564228 | 52564001 | ID=Msa0857230-mRNA-1:five_prime_utr;Parent=Msa0857230-mRNA-1 |
| chr5_4 | five_prime_UTR | 52564927 | 52564970 | 52564927 | ID=Msa0857230-mRNA-1:five_prime_utr;Parent=Msa0857230-mRNA-1 |
| chr5_4 | five_prime_UTR | 52565275 | 52565312 | 52565275 | ID=Msa0857230-mRNA-1:five_prime_utr;Parent=Msa0857230-mRNA-1 |
| chr5_4 | CDS | 52565313 | 52565343 | 52565313 | ID=Msa0857230-mRNA-1:cds;Parent=Msa0857230-mRNA-1 |
| chr5_4 | CDS | 52566678 | 52566769 | 52566678 | ID=Msa0857230-mRNA-1:cds;Parent=Msa0857230-mRNA-1 |
| chr5_4 | CDS | 52566874 | 52566954 | 52566874 | ID=Msa0857230-mRNA-1:cds;Parent=Msa0857230-mRNA-1 |
| chr5_4 | CDS | 52567045 | 52567142 | 52567045 | ID=Msa0857230-mRNA-1:cds;Parent=Msa0857230-mRNA-1 |
| chr5_4 | CDS | 52567227 | 52567308 | 52567227 | ID=Msa0857230-mRNA-1:cds;Parent=Msa0857230-mRNA-1 |
| chr5_4 | CDS | 52567629 | 52567667 | 52567629 | ID=Msa0857230-mRNA-1:cds;Parent=Msa0857230-mRNA-1 |
| chr5_4 | three_prime_UTR | 52567668 | 52568286 | 52567668 | ID=Msa0857230-mRNA-1:three_prime_utr;Parent=Msa0857230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
