AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741440 MtrunA17_Chr5g0442811 96.897 290 9 0 14 303 203 492 0.0 570
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741440 AT2G30880.1 64.548 299 96 6 14 303 207 504 2.04e-98 298
Msa0741440 AT2G30880.2 73.143 175 47 0 14 188 207 381 1.01e-65 211

Find 74 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGAGGAGCTACAAAATT+TGG 0.192196 5_1:-61142112 Msa0741440:CDS
AAGCTGCTTCCATCAGTTTC+TGG 0.243919 5_1:+61140402 None:intergenic
TGCTGCTGCCTCGGCGGCTT+CGG 0.275529 5_1:+61142026 None:intergenic
CCAGAGAGATGCTGCTATTA+AGG 0.285614 5_1:-61141514 Msa0741440:CDS
CAACGAATGGAGCGATATTC+AGG 0.306147 5_1:-61140466 Msa0741440:CDS
CATGTTTGGTTGTTATCATC+AGG 0.317213 5_1:+61140308 None:intergenic
AAATATGTGGCGTACTGAAC+TGG 0.336452 5_1:-61141487 Msa0741440:CDS
GTTGCAATGTCGTTGGATTC+AGG 0.344088 5_1:-61142780 None:intergenic
TACACACTCAATCAACAAAA+TGG 0.344827 5_1:+61140241 None:intergenic
AGCATCTGCTGCTTATACTA+TGG 0.357385 5_1:-61142007 Msa0741440:CDS
AAAATTTGGCTCGAGACCTT+CGG 0.369260 5_1:-61142098 Msa0741440:CDS
CTCCATTCGTTGTCACCAAC+TGG 0.392987 5_1:+61140477 None:intergenic
AAATTTGGCTCGAGACCTTC+GGG 0.393652 5_1:-61142097 Msa0741440:CDS
TTTGCTATCTTGTACATGTT+TGG 0.394045 5_1:+61140294 None:intergenic
TAAGAGCGGAAGAGAAGGTC+AGG 0.418970 5_1:-61141422 Msa0741440:CDS
CAATGCTGAAGCTAGGATAA+AGG 0.428297 5_1:-61141388 Msa0741440:CDS
ATAGGAAACACTAAGAGTTA+AGG 0.432753 5_1:-61142133 Msa0741440:intron
AGGCAAGGATAGCCGATGTA+AGG 0.435309 5_1:-61140437 Msa0741440:CDS
CTGGCTGAATGTTGTTTACC+TGG 0.455370 5_1:+61140496 None:intergenic
CCTTAATAGCAGCATCTCTC+TGG 0.464490 5_1:+61141514 None:intergenic
ATTCCAGTGGTTAGCCAGCC+AGG 0.464960 5_1:-61140375 Msa0741440:CDS
AGCAGCAGATGCTGCTGCCT+CGG 0.468375 5_1:+61142017 None:intergenic
TGTGTTATAATGACCTTGAA+AGG 0.469440 5_1:-61140177 Msa0741440:three_prime_UTR
GTTGTTATCATCAGGGCTGA+TGG 0.475883 5_1:+61140316 None:intergenic
CTACATTCTCTGCAGGGATA+GGG 0.482199 5_1:+61140535 None:intergenic
AGCCAGTTGGTGACAACGAA+TGG 0.489395 5_1:-61140479 Msa0741440:CDS
CTTTATCCTAGCTTCAGCAT+TGG 0.489764 5_1:+61141389 None:intergenic
ACTACATTCTCTGCAGGGAT+AGG 0.492687 5_1:+61140534 None:intergenic
ATGTGAACTACATTCTCTGC+AGG 0.496979 5_1:+61140528 None:intergenic
ATGTTTGGTTGTTATCATCA+GGG 0.526491 5_1:+61140309 None:intergenic
GACGGCTGCACCTGAGCCGT+TGG 0.528928 5_1:+61142744 None:intergenic
GCAGGAGGTGTATGCACAGA+AGG 0.529056 5_1:-61141923 Msa0741440:intron
ATACCTGGCTGGCTAACCAC+TGG 0.534090 5_1:+61140372 None:intergenic
AGTGGCAACAAAAGAGAAGC+AGG 0.535884 5_1:-61141346 Msa0741440:CDS
TGTAGTAAGAGCGGAAGAGA+AGG 0.540021 5_1:-61141427 Msa0741440:CDS
GTGTTATAATGACCTTGAAA+GGG 0.542507 5_1:-61140176 Msa0741440:three_prime_UTR
GGCAAGGATAGCCGATGTAA+GGG 0.546348 5_1:-61140436 Msa0741440:CDS
AATATGTGGCGTACTGAACT+GGG 0.547593 5_1:-61141486 Msa0741440:CDS
AGAAACTGATGGAAGCAGCT+TGG 0.549548 5_1:-61140400 Msa0741440:CDS
AGTATTGTATCCAACGGCTC+AGG 0.552401 5_1:-61142754 Msa0741440:intron
AAAAGATTCTGAGAAGCAGC+AGG 0.553932 5_1:-61141941 Msa0741440:CDS
CTGAGGCCAATGCTGAAGCT+AGG 0.557271 5_1:-61141395 Msa0741440:CDS
TGCTAAAAGCACAACTTCAA+AGG 0.561884 5_1:-61141302 Msa0741440:intron
GGTTTGCTCTAGAAACACTT+AGG 0.566012 5_1:+61140556 None:intergenic
TGCAGCTGTTGCAATGTCGT+TGG 0.567897 5_1:-61142787 None:intergenic
GGTGATGATTGATACCTGGC+TGG 0.573491 5_1:+61140361 None:intergenic
AGCAGATGCTGCTGCCTCGG+CGG 0.574207 5_1:+61142020 None:intergenic
AGTTCACATGGCAACAGACC+AGG 0.584699 5_1:-61140514 Msa0741440:CDS
TCGTGGTGATGATTGATACC+TGG 0.587331 5_1:+61140357 None:intergenic
AAGAGTTTGATCCTTGTTCG+TGG 0.588496 5_1:+61140340 None:intergenic
AACACTAAGAGTTAAGGATG+AGG 0.588499 5_1:-61142127 Msa0741440:CDS
AGAAGCAACTGTAGTAAGAG+CGG 0.589787 5_1:-61141436 Msa0741440:CDS
GTCGCAGCACCAGAAACTGA+TGG 0.593220 5_1:-61140411 Msa0741440:CDS
TGCAGAGAATGTAGTTCACA+TGG 0.596449 5_1:-61140526 Msa0741440:CDS
ATCAATCATCACCACGAACA+AGG 0.599152 5_1:-61140351 Msa0741440:CDS
AGCTGTACAGAGAGAATCAG+TGG 0.602753 5_1:-61141364 Msa0741440:CDS
CTATTAAGGAGGCAAATATG+TGG 0.616871 5_1:-61141500 Msa0741440:CDS
AGAGAAGGTCAGGGTTGCTG+AGG 0.616929 5_1:-61141412 Msa0741440:CDS
TTCAACTATAACAGAAATAG+CGG 0.620673 5_1:-61142067 Msa0741440:CDS
AGGTGCAGTATTGTATCCAA+CGG 0.628283 5_1:-61142760 Msa0741440:CDS
TAGTTGAATCACGTGCCCGA+AGG 0.632429 5_1:+61142082 None:intergenic
TGATCCCACTGAAGAAAATG+TGG 0.636056 5_1:-61140589 Msa0741440:CDS
TGAGACTGCCGAAGCCGCCG+AGG 0.640696 5_1:-61142034 Msa0741440:CDS
GTAAACAACATTCAGCCAGT+TGG 0.644235 5_1:-61140492 Msa0741440:CDS
GAGCGATATTCAGGCTACAG+AGG 0.646570 5_1:-61140457 Msa0741440:CDS
AAGAGCGGAAGAGAAGGTCA+GGG 0.649867 5_1:-61141421 Msa0741440:CDS
ATATTCAGGCTACAGAGGCA+AGG 0.654585 5_1:-61140452 Msa0741440:CDS
GAGAGATGCTGCTATTAAGG+AGG 0.656995 5_1:-61141511 Msa0741440:CDS
CTTATACTATGGATGAGCAA+CGG 0.660420 5_1:-61141996 Msa0741440:CDS
AATAGCAGCATCTCTCTGGT+CGG 0.661298 5_1:+61141518 None:intergenic
TGTGAACTACATTCTCTGCA+GGG 0.666902 5_1:+61140529 None:intergenic
AGATTCTGAGAAGCAGCAGG+AGG 0.670302 5_1:-61141938 Msa0741440:CDS
AAGCAGCTTGGATATTCCAG+TGG 0.674719 5_1:-61140388 Msa0741440:CDS
TGCTGCGACTTCCCTTACAT+CGG 0.697961 5_1:+61140425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAATAAACTACTATAA+TGG - chr5_1:61140147-61140166 Msa0741440:three_prime_UTR 15.0%
!!! TTTTTTTCTTAGTATATTGT+GGG - chr5_1:61140517-61140536 Msa0741440:CDS 15.0%
!!! ATGAAATTTTTAATTAGACA+AGG - chr5_1:61140602-61140621 Msa0741440:CDS 15.0%
!! AAATCAAATGATAAAAAAAG+TGG - chr5_1:61141770-61141789 Msa0741440:intron 15.0%
!! TATAATACTAGAGAATTAAA+TGG - chr5_1:61142041-61142060 Msa0741440:CDS 15.0%
!!! TATTTTTTTTAACTGTTAAC+AGG - chr5_1:61142172-61142191 Msa0741440:intron 15.0%
!!! TAGTTTATTTGTTTGTTTTG+GGG + chr5_1:61140141-61140160 None:intergenic 20.0%
!!! GTAGTTTATTTGTTTGTTTT+GGG + chr5_1:61140142-61140161 None:intergenic 20.0%
!!! AGTAGTTTATTTGTTTGTTT+TGG + chr5_1:61140143-61140162 None:intergenic 20.0%
!! CACAATATACTAAGAAAAAA+AGG + chr5_1:61140518-61140537 None:intergenic 20.0%
!!! CTTTTTTTCTTAGTATATTG+TGG - chr5_1:61140516-61140535 Msa0741440:CDS 20.0%
!!! TTTTTTCTTAGTATATTGTG+GGG - chr5_1:61140518-61140537 Msa0741440:CDS 20.0%
!! ATTCATAAGAAGATTTGATT+CGG + chr5_1:61141657-61141676 None:intergenic 20.0%
!!! TAGATGATACATTAGTTTAT+AGG + chr5_1:61141718-61141737 None:intergenic 20.0%
!! ATACACACTAAAAATTCATA+TGG - chr5_1:61141958-61141977 Msa0741440:CDS 20.0%
!! ACTAAAAATTCATATGGATT+AGG - chr5_1:61141964-61141983 Msa0741440:CDS 20.0%
!!! ATTACATTTTTGTCAGAAAA+AGG + chr5_1:61142700-61142719 None:intergenic 20.0%
!!! AGTTTATTTGTTTGTTTTGG+GGG + chr5_1:61140140-61140159 None:intergenic 25.0%
! TAGACAAGGAATATTTGTAT+AGG - chr5_1:61140616-61140635 Msa0741440:CDS 25.0%
! AGACAAGGAATATTTGTATA+GGG - chr5_1:61140617-61140636 Msa0741440:CDS 25.0%
! AAAGCAATAAAGAACCATAA+AGG + chr5_1:61140663-61140682 None:intergenic 25.0%
! TTTATGGTTCTTTATTGCTT+TGG - chr5_1:61140662-61140681 Msa0741440:intron 25.0%
!!! AAAATGCTGTTTTACTCAAT+AGG - chr5_1:61140695-61140714 Msa0741440:intron 25.0%
! TTCAACTATAACAGAAATAG+CGG - chr5_1:61140779-61140798 Msa0741440:intron 25.0%
!!! AGAAGGTATGCTTTAATTTT+TGG - chr5_1:61140940-61140959 Msa0741440:intron 25.0%
! TACAAAATGCTATCAAATAG+AGG - chr5_1:61141111-61141130 Msa0741440:intron 25.0%
!! TTGTTGATTGTGGAAAATAA+CGG + chr5_1:61141182-61141201 None:intergenic 25.0%
!!! AAATTGTTTGTTGTAGCTAA+AGG - chr5_1:61141257-61141276 Msa0741440:intron 25.0%
! GAGTACGAAGAAAAAATTAT+GGG - chr5_1:61141279-61141298 Msa0741440:intron 25.0%
!!! TGAATTGGAATATCGATTTT+CGG - chr5_1:61141627-61141646 Msa0741440:intron 25.0%
! TTCATAAGAAGATTTGATTC+GGG + chr5_1:61141656-61141675 None:intergenic 25.0%
!!! TGTTGCTTGTTTTTACTTAA+TGG + chr5_1:61141688-61141707 None:intergenic 25.0%
! AGGATTTATCATAATGAATC+AGG - chr5_1:61141886-61141905 Msa0741440:intron 25.0%
! AATTAAATGGAAACTTCAGA+TGG - chr5_1:61142054-61142073 Msa0741440:CDS 25.0%
!! TATGAATTATGAGTTCGTTT+TGG - chr5_1:61142090-61142109 Msa0741440:CDS 25.0%
AAGTTGCTATAGTCATAATC+CGG - chr5_1:61140173-61140192 Msa0741440:three_prime_UTR 30.0%
!! GGAAAAAAAAAAGTGTCACT+GGG - chr5_1:61140487-61140506 Msa0741440:CDS 30.0%
ATTTGTATAGGGATGTAGAT+CGG - chr5_1:61140628-61140647 Msa0741440:CDS 30.0%
ATAGGAAACACTAAGAGTTA+AGG - chr5_1:61140713-61140732 Msa0741440:intron 30.0%
!! AGGTATGCTTTAATTTTTGG+CGG - chr5_1:61140943-61140962 Msa0741440:intron 30.0%
CAACTCTTGAAAAACTGTTT+CGG - chr5_1:61140979-61140998 Msa0741440:intron 30.0%
TATTTAACAACATTGGCCAA+GGG + chr5_1:61141013-61141032 None:intergenic 30.0%
TAACCGCTATTTAACAACAT+TGG + chr5_1:61141020-61141039 None:intergenic 30.0%
TTGTTAAATAGCGGTTATAG+TGG - chr5_1:61141023-61141042 Msa0741440:intron 30.0%
CTATCAAATAGAGGTTATAG+CGG - chr5_1:61141120-61141139 Msa0741440:intron 30.0%
GGAGTACGAAGAAAAAATTA+TGG - chr5_1:61141278-61141297 Msa0741440:intron 30.0%
ATTAACAAAGCTTCAAGCAA+GGG + chr5_1:61141590-61141609 None:intergenic 30.0%
TATTAACAAAGCTTCAAGCA+AGG + chr5_1:61141591-61141610 None:intergenic 30.0%
!! GCTTGAAGCTTTGTTAATAA+CGG - chr5_1:61141592-61141611 Msa0741440:intron 30.0%
CGGTTATCAAAATTGTGAAT+TGG - chr5_1:61141612-61141631 Msa0741440:intron 30.0%
CAAATGATAAAAAAAGTGGC+TGG - chr5_1:61141774-61141793 Msa0741440:intron 30.0%
TACAAAGTTGACAAAAAACG+TGG - chr5_1:61141800-61141819 Msa0741440:intron 30.0%
GATACACATGTATCATAAGA+TGG - chr5_1:61142008-61142027 Msa0741440:CDS 30.0%
! TTATCCACATTTTCTTCAGT+GGG + chr5_1:61142264-61142283 None:intergenic 30.0%
! TTTATCCACATTTTCTTCAG+TGG + chr5_1:61142265-61142284 None:intergenic 30.0%
ATGTTTGGTTGTTATCATCA+GGG + chr5_1:61142540-61142559 None:intergenic 30.0%
! TTTGCTATCTTGTACATGTT+TGG + chr5_1:61142555-61142574 None:intergenic 30.0%
TACACACTCAATCAACAAAA+TGG + chr5_1:61142608-61142627 None:intergenic 30.0%
TGTGTTATAATGACCTTGAA+AGG - chr5_1:61142669-61142688 Msa0741440:intron 30.0%
GTGTTATAATGACCTTGAAA+GGG - chr5_1:61142670-61142689 Msa0741440:intron 30.0%
TATAGTCATAATCCGGAGTT+CGG - chr5_1:61140180-61140199 Msa0741440:three_prime_UTR 35.0%
ACCTAGTCAATGATTGTTCT+AGG - chr5_1:61140221-61140240 Msa0741440:three_prime_UTR 35.0%
CAACTTAGACTATAGTCAAG+TGG + chr5_1:61140319-61140338 None:intergenic 35.0%
! GTTCTCTTGTTTCGAGAATA+AGG - chr5_1:61140456-61140475 Msa0741440:CDS 35.0%
TTTCGAGAATAAGGAAGTGA+AGG - chr5_1:61140465-61140484 Msa0741440:CDS 35.0%
TTCGAGAATAAGGAAGTGAA+GGG - chr5_1:61140466-61140485 Msa0741440:CDS 35.0%
!! GGGAAAAAAAAAAGTGTCAC+TGG - chr5_1:61140486-61140505 Msa0741440:CDS 35.0%
AACACTAAGAGTTAAGGATG+AGG - chr5_1:61140719-61140738 Msa0741440:intron 35.0%
CTTATACTATGGATGAGCAA+CGG - chr5_1:61140850-61140869 Msa0741440:intron 35.0%
CTATTTAACAACATTGGCCA+AGG + chr5_1:61141014-61141033 None:intergenic 35.0%
TGGCCAATGTTGTTAAATAG+CGG - chr5_1:61141014-61141033 Msa0741440:intron 35.0%
! GATTTGTTCAAATTCCGCTA+CGG + chr5_1:61141064-61141083 None:intergenic 35.0%
! AGCTACATTGTTGTTGATTG+TGG + chr5_1:61141192-61141211 None:intergenic 35.0%
CTATTAAGGAGGCAAATATG+TGG - chr5_1:61141346-61141365 Msa0741440:CDS 35.0%
! TGCTAAAAGCACAACTTCAA+AGG - chr5_1:61141544-61141563 Msa0741440:CDS 35.0%
ATGAATCACCATCTATCCTT+TGG + chr5_1:61141835-61141854 None:intergenic 35.0%
TCTTGAATCCTGATTCATTG+TGG + chr5_1:61141917-61141936 None:intergenic 35.0%
CATGTTTGGTTGTTATCATC+AGG + chr5_1:61142541-61142560 None:intergenic 35.0%
AGGTGCAGTATTGTATCCAA+CGG - chr5_1:61140086-61140105 Msa0741440:three_prime_UTR 40.0%
ATAGTCATAATCCGGAGTTC+GGG - chr5_1:61140181-61140200 Msa0741440:three_prime_UTR 40.0%
! GCCTAGAACAATCATTGACT+AGG + chr5_1:61140225-61140244 None:intergenic 40.0%
GGATGAGGAGCTACAAAATT+TGG - chr5_1:61140734-61140753 Msa0741440:intron 40.0%
! AAAATTTGGCTCGAGACCTT+CGG - chr5_1:61140748-61140767 Msa0741440:intron 40.0%
! AGCATCTGCTGCTTATACTA+TGG - chr5_1:61140839-61140858 Msa0741440:intron 40.0%
! AAAAGATTCTGAGAAGCAGC+AGG - chr5_1:61140905-61140924 Msa0741440:intron 40.0%
AAATATGTGGCGTACTGAAC+TGG - chr5_1:61141359-61141378 Msa0741440:CDS 40.0%
AATATGTGGCGTACTGAACT+GGG - chr5_1:61141360-61141379 Msa0741440:CDS 40.0%
AGAAGCAACTGTAGTAAGAG+CGG - chr5_1:61141410-61141429 Msa0741440:CDS 40.0%
CTTTATCCTAGCTTCAGCAT+TGG + chr5_1:61141460-61141479 None:intergenic 40.0%
CAATGCTGAAGCTAGGATAA+AGG - chr5_1:61141458-61141477 Msa0741440:CDS 40.0%
AAGTTGACAAAAAACGTGGC+AGG - chr5_1:61141804-61141823 Msa0741440:intron 40.0%
GGTGATTCATCAGAGTGAAT+TGG - chr5_1:61141845-61141864 Msa0741440:intron 40.0%
TGTATGCCAGCTATGAAATG+TGG - chr5_1:61142120-61142139 Msa0741440:CDS 40.0%
TGATCCCACTGAAGAAAATG+TGG - chr5_1:61142257-61142276 Msa0741440:intron 40.0%
!! GGTTTGCTCTAGAAACACTT+AGG + chr5_1:61142293-61142312 None:intergenic 40.0%
TGTGAACTACATTCTCTGCA+GGG + chr5_1:61142320-61142339 None:intergenic 40.0%
ATGTGAACTACATTCTCTGC+AGG + chr5_1:61142321-61142340 None:intergenic 40.0%
TGCAGAGAATGTAGTTCACA+TGG - chr5_1:61142320-61142339 Msa0741440:intron 40.0%
GTAAACAACATTCAGCCAGT+TGG - chr5_1:61142354-61142373 Msa0741440:intron 40.0%
ATCAATCATCACCACGAACA+AGG - chr5_1:61142495-61142514 Msa0741440:intron 40.0%
AAGAGTTTGATCCTTGTTCG+TGG + chr5_1:61142509-61142528 None:intergenic 40.0%
!! GAAAAAGGTACTCCCTTTCA+AGG + chr5_1:61142685-61142704 None:intergenic 40.0%
AGTATTGTATCCAACGGCTC+AGG - chr5_1:61140092-61140111 Msa0741440:three_prime_UTR 45.0%
!!! ATTTGTTTGTTTTGGGGGCC+AGG + chr5_1:61140135-61140154 None:intergenic 45.0%
TAGTCATAATCCGGAGTTCG+GGG - chr5_1:61140182-61140201 Msa0741440:three_prime_UTR 45.0%
ATTGTGGGGCTTGAATCTAG+TGG - chr5_1:61140532-61140551 Msa0741440:CDS 45.0%
AGGGATGTAGATCGGTATCT+TGG - chr5_1:61140636-61140655 Msa0741440:CDS 45.0%
GGGATGTAGATCGGTATCTT+GGG - chr5_1:61140637-61140656 Msa0741440:CDS 45.0%
ATCGGTATCTTGGGCCTTTA+TGG - chr5_1:61140646-61140665 Msa0741440:CDS 45.0%
! AAATTTGGCTCGAGACCTTC+GGG - chr5_1:61140749-61140768 Msa0741440:intron 45.0%
TGTTTCGGATGAATGACCCT+TGG - chr5_1:61140994-61141013 Msa0741440:intron 45.0%
AATAGCAGCATCTCTCTGGT+CGG + chr5_1:61141331-61141350 None:intergenic 45.0%
CCTTAATAGCAGCATCTCTC+TGG + chr5_1:61141335-61141354 None:intergenic 45.0%
CCAGAGAGATGCTGCTATTA+AGG - chr5_1:61141332-61141351 Msa0741440:CDS 45.0%
GAGAGATGCTGCTATTAAGG+AGG - chr5_1:61141335-61141354 Msa0741440:CDS 45.0%
TGTAGTAAGAGCGGAAGAGA+AGG - chr5_1:61141419-61141438 Msa0741440:CDS 45.0%
AGCTGTACAGAGAGAATCAG+TGG - chr5_1:61141482-61141501 Msa0741440:CDS 45.0%
AGTGGCAACAAAAGAGAAGC+AGG - chr5_1:61141500-61141519 Msa0741440:CDS 45.0%
AGGCTACACCAAAGGATAGA+TGG - chr5_1:61141824-61141843 Msa0741440:intron 45.0%
AGGATCGACCACAATGAATC+AGG - chr5_1:61141906-61141925 Msa0741440:intron 45.0%
GATGCTCCACATTTCATAGC+TGG + chr5_1:61142129-61142148 None:intergenic 45.0%
CTACATTCTCTGCAGGGATA+GGG + chr5_1:61142314-61142333 None:intergenic 45.0%
ACTACATTCTCTGCAGGGAT+AGG + chr5_1:61142315-61142334 None:intergenic 45.0%
! CTGGCTGAATGTTGTTTACC+TGG + chr5_1:61142353-61142372 None:intergenic 45.0%
CAACGAATGGAGCGATATTC+AGG - chr5_1:61142380-61142399 Msa0741440:intron 45.0%
ATATTCAGGCTACAGAGGCA+AGG - chr5_1:61142394-61142413 Msa0741440:intron 45.0%
AAGCTGCTTCCATCAGTTTC+TGG + chr5_1:61142447-61142466 None:intergenic 45.0%
AGAAACTGATGGAAGCAGCT+TGG - chr5_1:61142446-61142465 Msa0741440:intron 45.0%
AAGCAGCTTGGATATTCCAG+TGG - chr5_1:61142458-61142477 Msa0741440:intron 45.0%
! TCGTGGTGATGATTGATACC+TGG + chr5_1:61142492-61142511 None:intergenic 45.0%
GTTGTTATCATCAGGGCTGA+TGG + chr5_1:61142533-61142552 None:intergenic 45.0%
AGTCATAATCCGGAGTTCGG+GGG - chr5_1:61140183-61140202 Msa0741440:three_prime_UTR 50.0%
GGGCTTGAATCTAGTGGCAA+AGG - chr5_1:61140538-61140557 Msa0741440:CDS 50.0%
TAGTTGAATCACGTGCCCGA+AGG + chr5_1:61140767-61140786 None:intergenic 50.0%
! AGATTCTGAGAAGCAGCAGG+AGG - chr5_1:61140908-61140927 Msa0741440:intron 50.0%
GCTATAGCGCTTTACCGTAG+CGG - chr5_1:61141047-61141066 Msa0741440:intron 50.0%
TAAGAGCGGAAGAGAAGGTC+AGG - chr5_1:61141424-61141443 Msa0741440:CDS 50.0%
AAGAGCGGAAGAGAAGGTCA+GGG - chr5_1:61141425-61141444 Msa0741440:CDS 50.0%
CAACTTCAAAGGTCAGCGTC+TGG - chr5_1:61141555-61141574 Msa0741440:CDS 50.0%
GGACTCGATCGTAGTGTATC+AGG - chr5_1:61141866-61141885 Msa0741440:intron 50.0%
AGTTCACATGGCAACAGACC+AGG - chr5_1:61142332-61142351 Msa0741440:intron 50.0%
!! AGCCAGTTGGTGACAACGAA+TGG - chr5_1:61142367-61142386 Msa0741440:intron 50.0%
CTCCATTCGTTGTCACCAAC+TGG + chr5_1:61142372-61142391 None:intergenic 50.0%
GAGCGATATTCAGGCTACAG+AGG - chr5_1:61142389-61142408 Msa0741440:intron 50.0%
AGGCAAGGATAGCCGATGTA+AGG - chr5_1:61142409-61142428 Msa0741440:intron 50.0%
GGCAAGGATAGCCGATGTAA+GGG - chr5_1:61142410-61142429 Msa0741440:intron 50.0%
TGCTGCGACTTCCCTTACAT+CGG + chr5_1:61142424-61142443 None:intergenic 50.0%
GGTGATGATTGATACCTGGC+TGG + chr5_1:61142488-61142507 None:intergenic 50.0%
GTGCAGCCGTCAAATGATCC+TGG - chr5_1:61140114-61140133 Msa0741440:three_prime_UTR 55.0%
TGGGGGCCAGGATCATTTGA+CGG + chr5_1:61140123-61140142 None:intergenic 55.0%
TACCTCTATCCCCCGAACTC+CGG + chr5_1:61140195-61140214 None:intergenic 55.0%
! GCAGGAGGTGTATGCACAGA+AGG - chr5_1:61140923-61140942 Msa0741440:intron 55.0%
AGAGAAGGTCAGGGTTGCTG+AGG - chr5_1:61141434-61141453 Msa0741440:CDS 55.0%
CTGAGGCCAATGCTGAAGCT+AGG - chr5_1:61141451-61141470 Msa0741440:CDS 55.0%
AACGTGGCAGGCTACACCAA+AGG - chr5_1:61141816-61141835 Msa0741440:intron 55.0%
GTCGCAGCACCAGAAACTGA+TGG - chr5_1:61142435-61142454 Msa0741440:intron 55.0%
! ATTCCAGTGGTTAGCCAGCC+AGG - chr5_1:61142471-61142490 Msa0741440:intron 55.0%
! ATACCTGGCTGGCTAACCAC+TGG + chr5_1:61142477-61142496 None:intergenic 55.0%
ATCCGGAGTTCGGGGGATAG+AGG - chr5_1:61140190-61140209 Msa0741440:three_prime_UTR 60.0%
AGCAGCAGATGCTGCTGCCT+CGG + chr5_1:61140832-61140851 None:intergenic 60.0%
AGCAGATGCTGCTGCCTCGG+CGG + chr5_1:61140829-61140848 None:intergenic 65.0%
GACGGCTGCACCTGAGCCGT+TGG + chr5_1:61140105-61140124 None:intergenic 70.0%
TGAGACTGCCGAAGCCGCCG+AGG - chr5_1:61140812-61140831 Msa0741440:intron 70.0%
TGCTGCTGCCTCGGCGGCTT+CGG + chr5_1:61140823-61140842 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61140072 61142796 61140072 ID=Msa0741440;Name=Msa0741440
chr5_1 mRNA 61140072 61142796 61140072 ID=Msa0741440-mRNA-1;Parent=Msa0741440;Name=Msa0741440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.66|0.75|0.75|1|1|4|254|303
chr5_1 exon 61140072 61140674 61140072 ID=Msa0741440-mRNA-1:exon:17670;Parent=Msa0741440-mRNA-1
chr5_1 exon 61141303 61141595 61141303 ID=Msa0741440-mRNA-1:exon:17669;Parent=Msa0741440-mRNA-1
chr5_1 exon 61141924 61142151 61141924 ID=Msa0741440-mRNA-1:exon:17668;Parent=Msa0741440-mRNA-1
chr5_1 exon 61142755 61142796 61142755 ID=Msa0741440-mRNA-1:exon:17667;Parent=Msa0741440-mRNA-1
chr5_1 CDS 61142755 61142796 61142755 ID=Msa0741440-mRNA-1:cds;Parent=Msa0741440-mRNA-1
chr5_1 CDS 61141924 61142151 61141924 ID=Msa0741440-mRNA-1:cds;Parent=Msa0741440-mRNA-1
chr5_1 CDS 61141303 61141595 61141303 ID=Msa0741440-mRNA-1:cds;Parent=Msa0741440-mRNA-1
chr5_1 CDS 61140326 61140674 61140326 ID=Msa0741440-mRNA-1:cds;Parent=Msa0741440-mRNA-1
chr5_1 three_prime_UTR 61140072 61140325 61140072 ID=Msa0741440-mRNA-1:three_prime_utr;Parent=Msa0741440-mRNA-1
Gene Sequence

>Msa0741440

ATGTCGTTGGATTCAGGTGCAGTATTGTATCCAACGGCTCAGGAAACACTAAGAGTTAAGGATGAGGAGCTACAAAATTTGGCTCGAGACCTTCGGGCACGTGATTCAACTATAACAGAAATAGCGGATAAATTATCTGAGACTGCCGAAGCCGCCGAGGCAGCAGCATCTGCTGCTTATACTATGGATGAGCAACGGAGAATTGTTTGTGCAGAAATTGAGCGTTTGAGAAAAGATTCTGAGAAGCAGCAGGAGGTGTATGCACAGAAGCTAAAGGAGTACGAAGAAAAAATTATGGGCTTAAGCAAAGAAAGAGAGCAATTAACCGACCAGAGAGATGCTGCTATTAAGGAGGCAAATATGTGGCGTACTGAACTGGGAAAAGCTAGAGAGCATGACGTGATCTTAGAAGCAACTGTAGTAAGAGCGGAAGAGAAGGTCAGGGTTGCTGAGGCCAATGCTGAAGCTAGGATAAAGGAAGCTGTACAGAGAGAATCAGTGGCAACAAAAGAGAAGCAGGAACTTCTTGCATATGTTAACATGCTAAAAGCACAACTTCAAAGGCAACACATTGATGCAACTCAAGTTGTTGAGAAGACAGAGTCATGCTCAGATACAAAGCATGTTGATCCCACTGAAGAAAATGTGGATAAAGCATGCCTAAGTGTTTCTAGAGCAAACCCTATCCCTGCAGAGAATGTAGTTCACATGGCAACAGACCAGGTAAACAACATTCAGCCAGTTGGTGACAACGAATGGAGCGATATTCAGGCTACAGAGGCAAGGATAGCCGATGTAAGGGAAGTCGCAGCACCAGAAACTGATGGAAGCAGCTTGGATATTCCAGTGGTTAGCCAGCCAGGTATCAATCATCACCACGAACAAGGATCAAACTCTTTCCATCAGCCCTGA

Protein sequence

>Msa0741440

MSLDSGAVLYPTAQETLRVKDEELQNLARDLRARDSTITEIADKLSETAEAAEAAASAAYTMDEQRRIVCAEIERLRKDSEKQQEVYAQKLKEYEEKIMGLSKEREQLTDQRDAAIKEANMWRTELGKAREHDVILEATVVRAEEKVRVAEANAEARIKEAVQRESVATKEKQELLAYVNMLKAQLQRQHIDATQVVEKTESCSDTKHVDPTEENVDKACLSVSRANPIPAENVVHMATDQVNNIQPVGDNEWSDIQATEARIADVREVAAPETDGSSLDIPVVSQPGINHHHEQGSNSFHQP*