AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0822500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822500 MtrunA17_Chr5g0442811 98.374 492 8 0 1 492 1 492 0.0 1000
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822500 AT2G30880.1 73.200 500 124 6 2 492 6 504 0.0 673
Msa0822500 AT2G30880.2 80.053 376 75 0 2 377 6 381 0.0 587

Find 118 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGAGGAGCTACAAAATT+TGG 0.192196 5_3:-60921023 Msa0822500:CDS
AAGCTGCTTCCATCAGTTTC+TGG 0.243919 5_3:+60919313 None:intergenic
GGGAATGGTTCTACAAAATT+AGG 0.266451 5_3:-60922525 Msa0822500:CDS
GGACCCAACAACTGGGAAAA+TGG 0.267982 5_3:-60924072 Msa0822500:CDS
TGCTGCTGCCTCGGCGGCTT+CGG 0.275529 5_3:+60920937 None:intergenic
CCAGAGAGATGCTGCTATTA+AGG 0.285614 5_3:-60920425 Msa0822500:CDS
CGTCAGCTAGCTTCTGCTTC+TGG 0.300599 5_3:-60924900 Msa0822500:CDS
CAACGAATGGAGCGATATTC+AGG 0.306147 5_3:-60919377 Msa0822500:CDS
AGTTGTTGATCTACGCCTTA+TGG 0.312222 5_3:-60925065 Msa0822500:exon
GGACCATCAGTAGTCCTATT+TGG 0.315687 5_3:+60922396 None:intergenic
CATGTTTGGTTGTTATCATC+AGG 0.317213 5_3:+60919219 None:intergenic
TTCTGGTAGAAATCTGTTGC+AGG 0.325130 5_3:-60924883 Msa0822500:CDS
AAATATGTGGCGTACTGAAC+TGG 0.336452 5_3:-60920398 Msa0822500:CDS
TACACACTCAATCAACAAAA+TGG 0.344827 5_3:+60919152 None:intergenic
CTCTTGGAATGATGCCAAAT+AGG 0.350376 5_3:-60922410 Msa0822500:CDS
AGCATCTGCTGCTTATACTA+TGG 0.357385 5_3:-60920918 Msa0822500:CDS
TGTAGAACCATTCCCACTTA+AGG 0.357415 5_3:+60922533 None:intergenic
AAAATTTGGCTCGAGACCTT+CGG 0.369260 5_3:-60921009 Msa0822500:CDS
GTGATCTTGGACCCAACAAC+TGG 0.369582 5_3:-60924080 Msa0822500:CDS
TTTGGTGACAGCTGAGGAAA+TGG 0.377415 5_3:-60924115 Msa0822500:intron
AACTTCCTCATTTAGATATC+GGG 0.385027 5_3:-60923587 Msa0822500:intron
TGAAAACACAGAGAATAGTT+TGG 0.385837 5_3:-60924934 Msa0822500:CDS
CTCCATTCGTTGTCACCAAC+TGG 0.392987 5_3:+60919388 None:intergenic
AAATTTGGCTCGAGACCTTC+GGG 0.393652 5_3:-60921008 Msa0822500:CDS
TTTGCTATCTTGTACATGTT+TGG 0.394045 5_3:+60919205 None:intergenic
ATTTCTTTGCGAAATGCTCT+TGG 0.394738 5_3:-60922426 Msa0822500:CDS
GAACGAACGTTGGGTGATCT+TGG 0.411577 5_3:-60924093 Msa0822500:CDS
TAAGAGCGGAAGAGAAGGTC+AGG 0.418970 5_3:-60920333 Msa0822500:CDS
CAATGCTGAAGCTAGGATAA+AGG 0.428297 5_3:-60920299 Msa0822500:CDS
ATAGGAAACACTAAGAGTTA+AGG 0.432753 5_3:-60921044 Msa0822500:intron
AGGCAAGGATAGCCGATGTA+AGG 0.435309 5_3:-60919348 Msa0822500:CDS
CTCCTGGTGCAGCTCGAGCA+TGG 0.438189 5_3:-60923527 Msa0822500:CDS
TCCTGGTGCAGCTCGAGCAT+GGG 0.444038 5_3:-60923526 Msa0822500:CDS
AAAGTTTCAAACCCAACAAA+AGG 0.446581 5_3:+60925103 None:intergenic
TTCCTATGCGCGGAGACTCC+TGG 0.453816 5_3:-60923543 Msa0822500:CDS
CTGGCTGAATGTTGTTTACC+TGG 0.455370 5_3:+60919407 None:intergenic
CCTTAATAGCAGCATCTCTC+TGG 0.464490 5_3:+60920425 None:intergenic
ATTCCAGTGGTTAGCCAGCC+AGG 0.464960 5_3:-60919286 Msa0822500:CDS
AGCAGCAGATGCTGCTGCCT+CGG 0.468375 5_3:+60920928 None:intergenic
TGTGTTATAATGACCTTGAA+AGG 0.469440 5_3:-60919088 Msa0822500:three_prime_UTR
GTTGTTATCATCAGGGCTGA+TGG 0.475883 5_3:+60919227 None:intergenic
CTACATTCTCTGCAGGGATA+GGG 0.482199 5_3:+60919446 None:intergenic
AGCCAGTTGGTGACAACGAA+TGG 0.489395 5_3:-60919390 Msa0822500:CDS
CTTTATCCTAGCTTCAGCAT+TGG 0.489764 5_3:+60920300 None:intergenic
CGTAGATCAACAACTCTTGT+CGG 0.491289 5_3:+60925073 None:intergenic
ACTACATTCTCTGCAGGGAT+AGG 0.492687 5_3:+60919445 None:intergenic
GAGGAAATGGAACGAACGTT+GGG 0.494683 5_3:-60924102 Msa0822500:CDS
ATGTGAACTACATTCTCTGC+AGG 0.496979 5_3:+60919439 None:intergenic
GGAAAAGTTAATTACAGTCT+CGG 0.501614 5_3:+60924842 None:intergenic
TAGGACTACTGATGGTCCTA+TGG 0.502862 5_3:-60922391 Msa0822500:CDS
CATGCTTACTTGAAATTCAC+AGG 0.510486 5_3:+60923863 None:intergenic
ACCCATGCTCGAGCTGCACC+AGG 0.524783 5_3:+60923525 None:intergenic
ATGTTTGGTTGTTATCATCA+GGG 0.526491 5_3:+60919220 None:intergenic
AGAGTACCGGAGAAGCCATA+AGG 0.527526 5_3:+60925050 None:intergenic
GCAGGAGGTGTATGCACAGA+AGG 0.529056 5_3:-60920834 Msa0822500:intron
GTGAATTCCTTAAGTGGGAA+TGG 0.529448 5_3:-60922540 Msa0822500:CDS
AGAATTGTTCCCTTGACAGT+TGG 0.531526 5_3:+60923917 None:intergenic
TCTACGCCTTATGGCTTCTC+CGG 0.532808 5_3:-60925056 Msa0822500:intron
GAAGCTGTGAATTCCTTAAG+TGG 0.533425 5_3:-60922546 Msa0822500:CDS
ATACCTGGCTGGCTAACCAC+TGG 0.534090 5_3:+60919283 None:intergenic
AGTGGCAACAAAAGAGAAGC+AGG 0.535884 5_3:-60920257 Msa0822500:CDS
AAGAAATGAGCCAACTGTCA+AGG 0.539148 5_3:-60923927 Msa0822500:CDS
TGTAGTAAGAGCGGAAGAGA+AGG 0.540021 5_3:-60920338 Msa0822500:CDS
GTGTTATAATGACCTTGAAA+GGG 0.542507 5_3:-60919087 Msa0822500:three_prime_UTR
ACATTCCGAGGCTGTTGAGT+TGG 0.543936 5_3:+60922476 None:intergenic
GGCAAGGATAGCCGATGTAA+GGG 0.546348 5_3:-60919347 Msa0822500:CDS
ATGATTGTTAAATCATCCAT+AGG 0.546789 5_3:+60922375 None:intergenic
AATATGTGGCGTACTGAACT+GGG 0.547593 5_3:-60920397 Msa0822500:CDS
AGAAACTGATGGAAGCAGCT+TGG 0.549548 5_3:-60919311 Msa0822500:CDS
AGTGGGCTACCGAAGTATGA+TGG 0.552759 5_3:-60923721 Msa0822500:CDS
AAAAGATTCTGAGAAGCAGC+AGG 0.553932 5_3:-60920852 Msa0822500:CDS
GTCTCGGATCTCTTAAGAAG+TGG 0.556862 5_3:+60924858 None:intergenic
CTGAGGCCAATGCTGAAGCT+AGG 0.557271 5_3:-60920306 Msa0822500:CDS
TGCTAAAAGCACAACTTCAA+AGG 0.561884 5_3:-60920213 Msa0822500:intron
TGCAGCCAACTCAACAGCCT+CGG 0.564100 5_3:-60922481 Msa0822500:CDS
GGTTTGCTCTAGAAACACTT+AGG 0.566012 5_3:+60919467 None:intergenic
AGAAATGAGCCAACTGTCAA+GGG 0.571886 5_3:-60923926 Msa0822500:CDS
GGTGATGATTGATACCTGGC+TGG 0.573491 5_3:+60919272 None:intergenic
CACCAGGAGTCTCCGCGCAT+AGG 0.573977 5_3:+60923541 None:intergenic
AGCAGATGCTGCTGCCTCGG+CGG 0.574207 5_3:+60920931 None:intergenic
AGTTCACATGGCAACAGACC+AGG 0.584699 5_3:-60919425 Msa0822500:CDS
GGATGATTTAACAATCATGA+AGG 0.585369 5_3:-60922370 Msa0822500:intron
TCGTGGTGATGATTGATACC+TGG 0.587331 5_3:+60919268 None:intergenic
AAGAGTTTGATCCTTGTTCG+TGG 0.588496 5_3:+60919251 None:intergenic
AACACTAAGAGTTAAGGATG+AGG 0.588499 5_3:-60921038 Msa0822500:CDS
TGAGGAAATGGAACGAACGT+TGG 0.588772 5_3:-60924103 Msa0822500:CDS
TCTGGTAGAAATCTGTTGCA+GGG 0.589058 5_3:-60924882 Msa0822500:CDS
AGAAGCAACTGTAGTAAGAG+CGG 0.589787 5_3:-60920347 Msa0822500:CDS
ATGCCAAATAGGACTACTGA+TGG 0.592713 5_3:-60922399 Msa0822500:CDS
GTCGCAGCACCAGAAACTGA+TGG 0.593220 5_3:-60919322 Msa0822500:CDS
TGCAGAGAATGTAGTTCACA+TGG 0.596449 5_3:-60919437 Msa0822500:CDS
AAGCTGTGAATTCCTTAAGT+GGG 0.598255 5_3:-60922545 Msa0822500:CDS
ATCAATCATCACCACGAACA+AGG 0.599152 5_3:-60919262 Msa0822500:CDS
AGCTGTACAGAGAGAATCAG+TGG 0.602753 5_3:-60920275 Msa0822500:CDS
AATTTCTTTAGAACATTCCG+AGG 0.603804 5_3:+60922464 None:intergenic
AAAGGATTATTTCCTATGCG+CGG 0.605240 5_3:-60923553 Msa0822500:CDS
TCACACCAGTGCCACTCAGT+TGG 0.610667 5_3:-60922586 Msa0822500:intron
TGATCTTGGACCCAACAACT+GGG 0.611893 5_3:-60924079 Msa0822500:CDS
CTATTAAGGAGGCAAATATG+TGG 0.616871 5_3:-60920411 Msa0822500:CDS
AGAGAAGGTCAGGGTTGCTG+AGG 0.616929 5_3:-60920323 Msa0822500:CDS
TTCAACTATAACAGAAATAG+CGG 0.620673 5_3:-60920978 Msa0822500:CDS
TAGTTGAATCACGTGCCCGA+AGG 0.632429 5_3:+60920993 None:intergenic
TGATCCCACTGAAGAAAATG+TGG 0.636056 5_3:-60919500 Msa0822500:CDS
TGAGACTGCCGAAGCCGCCG+AGG 0.640696 5_3:-60920945 Msa0822500:CDS
ATGCAGCATCCATCATACTT+CGG 0.643638 5_3:+60923712 None:intergenic
GTAAACAACATTCAGCCAGT+TGG 0.644235 5_3:-60919403 Msa0822500:CDS
GAGCGATATTCAGGCTACAG+AGG 0.646570 5_3:-60919368 Msa0822500:CDS
AAGAGCGGAAGAGAAGGTCA+GGG 0.649867 5_3:-60920332 Msa0822500:CDS
ATATTCAGGCTACAGAGGCA+AGG 0.654585 5_3:-60919363 Msa0822500:CDS
GAGAGATGCTGCTATTAAGG+AGG 0.656995 5_3:-60920422 Msa0822500:CDS
CTTATACTATGGATGAGCAA+CGG 0.660420 5_3:-60920907 Msa0822500:CDS
AATAGCAGCATCTCTCTGGT+CGG 0.661298 5_3:+60920429 None:intergenic
TGTGAACTACATTCTCTGCA+GGG 0.666902 5_3:+60919440 None:intergenic
AGATTCTGAGAAGCAGCAGG+AGG 0.670302 5_3:-60920849 Msa0822500:CDS
ATTCACAGGAGATACAGTAA+TGG 0.674475 5_3:+60923877 None:intergenic
AAGCAGCTTGGATATTCCAG+TGG 0.674719 5_3:-60919299 Msa0822500:CDS
ATGTTCTAAAGAAATTGAAG+CGG 0.687851 5_3:-60922457 Msa0822500:CDS
TGCTGCGACTTCCCTTACAT+CGG 0.697961 5_3:+60919336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTATAATTTT+CGG - chr5_3:60920484-60920503 Msa0822500:CDS 0.0%
!! GTTTGTAATTTAAAAAATAA+AGG - chr5_3:60919734-60919753 Msa0822500:intron 10.0%
!!! TGAAAAATTTGTTATTTTTT+TGG - chr5_3:60920020-60920039 Msa0822500:intron 10.0%
!!! TATACTAATTTGATTTATTT+CGG - chr5_3:60920401-60920420 Msa0822500:CDS 10.0%
!! AATATAAAAATGACAAAAAA+AGG + chr5_3:60920473-60920492 None:intergenic 10.0%
!!! CAATATATTTTGAAATTAAT+TGG - chr5_3:60920719-60920738 Msa0822500:intron 10.0%
!!! AATTTATAAGATATTTTTAG+CGG - chr5_3:60920769-60920788 Msa0822500:intron 10.0%
!!! TTTTGTTATATTTTAGTTTT+TGG + chr5_3:60920952-60920971 None:intergenic 10.0%
!! AAAAAAAAAAAAAACACAAA+GGG + chr5_3:60921974-60921993 None:intergenic 10.0%
!! AAAAAAAAAAAAAAACACAA+AGG + chr5_3:60921975-60921994 None:intergenic 10.0%
!! ATTTGAAGATTAATATGAAA+AGG + chr5_3:60919403-60919422 None:intergenic 15.0%
!!! TCATGTTTTCAAATTATTAT+CGG - chr5_3:60919861-60919880 Msa0822500:intron 15.0%
!!! TATATTATTTTTTTGTGTGA+AGG - chr5_3:60920137-60920156 Msa0822500:intron 15.0%
!!! ATATTATTTTTTTGTGTGAA+GGG - chr5_3:60920138-60920157 Msa0822500:intron 15.0%
!!! GTTATTTTTCTTTGATTTTT+AGG - chr5_3:60920198-60920217 Msa0822500:intron 15.0%
!!! ATTTATAAGATATTTTTAGC+GGG - chr5_3:60920770-60920789 Msa0822500:intron 15.0%
!! AAAAAAAACAACTGAAAATT+TGG + chr5_3:60921144-60921163 None:intergenic 15.0%
!! ATAGAATAAATAACAATAAG+AGG + chr5_3:60921424-60921443 None:intergenic 15.0%
!! CAAAAGAAAAAGAAAATTAA+GGG - chr5_3:60922418-60922437 Msa0822500:CDS 15.0%
!!! AATTTTTTTAGGTTTCTTTT+TGG + chr5_3:60922550-60922569 None:intergenic 15.0%
!!! TTTTTTTCTTAGTATATTGT+GGG - chr5_3:60922913-60922932 Msa0822500:intron 15.0%
!!! ATGAAATTTTTAATTAGACA+AGG - chr5_3:60922998-60923017 Msa0822500:intron 15.0%
!! TATAATACTAGAGAATTAAA+TGG - chr5_3:60924437-60924456 Msa0822500:intron 15.0%
!!! TATTTTTTTTAACTGTTAAC+AGG - chr5_3:60924568-60924587 Msa0822500:intron 15.0%
!!! ATAAACAAAAACCTTTTGTT+GGG - chr5_3:60919039-60919058 Msa0822500:three_prime_UTR 20.0%
!!! TTCAACTTTTATTGTGTTAA+TGG - chr5_3:60919423-60919442 Msa0822500:CDS 20.0%
!! CCAATATGAAATTAAAAACA+AGG + chr5_3:60920695-60920714 None:intergenic 20.0%
!!! CCTTGTTTTTAATTTCATAT+TGG - chr5_3:60920692-60920711 Msa0822500:intron 20.0%
!!! GTTATATTTTAGTTTTTGGA+AGG + chr5_3:60920948-60920967 None:intergenic 20.0%
!!! TTCCTTCAATAATTTTCTAA+GGG - chr5_3:60921305-60921324 Msa0822500:intron 20.0%
!!! TTTTTTATACTCACGTTAAT+AGG - chr5_3:60921342-60921361 Msa0822500:intron 20.0%
!!! TACAAATTGATCCATTTTAA+TGG + chr5_3:60921471-60921490 None:intergenic 20.0%
!!! TAAAATTTTCTCTAAAAGCT+TGG - chr5_3:60921938-60921957 Msa0822500:intron 20.0%
!! AAGACTTCAATTATTATTGA+AGG + chr5_3:60922329-60922348 None:intergenic 20.0%
!! TTCAGAAAAACACAATAAAT+GGG - chr5_3:60922347-60922366 Msa0822500:intron 20.0%
!! GCAAAAGAAAAAGAAAATTA+AGG - chr5_3:60922417-60922436 Msa0822500:CDS 20.0%
!!! CATTGCTTGTATTTTATAAA+CGG - chr5_3:60922740-60922759 Msa0822500:intron 20.0%
!! CACAATATACTAAGAAAAAA+AGG + chr5_3:60922914-60922933 None:intergenic 20.0%
!!! CTTTTTTTCTTAGTATATTG+TGG - chr5_3:60922912-60922931 Msa0822500:intron 20.0%
!!! TTTTTTCTTAGTATATTGTG+GGG - chr5_3:60922914-60922933 Msa0822500:intron 20.0%
!! ATTCATAAGAAGATTTGATT+CGG + chr5_3:60924053-60924072 None:intergenic 20.0%
!!! TAGATGATACATTAGTTTAT+AGG + chr5_3:60924114-60924133 None:intergenic 20.0%
!! AAATCAAATGATAGAAAAAG+TGG - chr5_3:60924166-60924185 Msa0822500:intron 20.0%
!! ATACACACTAAAAATTCATA+TGG - chr5_3:60924354-60924373 Msa0822500:intron 20.0%
!! ACTAAAAATTCATATGGATT+AGG - chr5_3:60924360-60924379 Msa0822500:intron 20.0%
!!! ATTACATTTTTGTCAGAAAA+AGG + chr5_3:60925096-60925115 None:intergenic 20.0%
!!! CAACAAAAGGTTTTTGTTTA+TGG + chr5_3:60919040-60919059 None:intergenic 25.0%
!! CATAAACAAAAACCTTTTGT+TGG - chr5_3:60919038-60919057 Msa0822500:three_prime_UTR 25.0%
!! TTTTCAAATTATTATCGGTG+TGG - chr5_3:60919866-60919885 Msa0822500:intron 25.0%
! AAACAAGATTGGATATTCAA+AGG + chr5_3:60919937-60919956 None:intergenic 25.0%
! TAAGAACATCAAAACAAGAT+TGG + chr5_3:60919948-60919967 None:intergenic 25.0%
!! ACAAATTTTTCACATAAGCT+AGG + chr5_3:60920012-60920031 None:intergenic 25.0%
!! TAACATAACCCTATTTTACT+TGG - chr5_3:60920325-60920344 Msa0822500:CDS 25.0%
! TAACTTCCTCATTTAGATAT+CGG - chr5_3:60920565-60920584 Msa0822500:intron 25.0%
!!! AGGAAATAATCCTTTTTTTG+TGG + chr5_3:60920595-60920614 None:intergenic 25.0%
!! TTTCTACTCTTTTTCCTTTT+AGG + chr5_3:60920833-60920852 None:intergenic 25.0%
! AAAACAACTGAAAATTTGGA+CGG + chr5_3:60921140-60921159 None:intergenic 25.0%
! CAAGAATTTAGTGAAAGTAA+TGG + chr5_3:60921214-60921233 None:intergenic 25.0%
!! ACATCCCATAATTTTAAACA+GGG + chr5_3:60921269-60921288 None:intergenic 25.0%
!! AACATCCCATAATTTTAAAC+AGG + chr5_3:60921270-60921289 None:intergenic 25.0%
!! CTTCCTTCAATAATTTTCTA+AGG - chr5_3:60921304-60921323 Msa0822500:intron 25.0%
! AACCCTTAGAAAATTATTGA+AGG + chr5_3:60921310-60921329 None:intergenic 25.0%
! TAGAAGATTAAGCTAAACTA+TGG + chr5_3:60921397-60921416 None:intergenic 25.0%
! GAGTAAAAATAAATCAGACA+AGG + chr5_3:60921547-60921566 None:intergenic 25.0%
!!! ATGTTCTAAAGAAATTGAAG+CGG - chr5_3:60921696-60921715 Msa0822500:intron 25.0%
! ATGATTGTTAAATCATCCAT+AGG + chr5_3:60921781-60921800 None:intergenic 25.0%
!!! TTTTTTTCCTTATCTTTGTC+TGG - chr5_3:60921988-60922007 Msa0822500:intron 25.0%
! TGAAACCTTAATGAATGAAA+AGG - chr5_3:60922236-60922255 Msa0822500:intron 25.0%
! GAAACCTTAATGAATGAAAA+GGG - chr5_3:60922237-60922256 Msa0822500:intron 25.0%
! AAACCTTAATGAATGAAAAG+GGG - chr5_3:60922238-60922257 Msa0822500:intron 25.0%
! CTTCAGAAAAACACAATAAA+TGG - chr5_3:60922346-60922365 Msa0822500:intron 25.0%
!!! TGGAAAATTTTCTAGCAAAA+AGG + chr5_3:60922530-60922549 None:intergenic 25.0%
!!! ATCACACACTCAATTTTTTT+AGG + chr5_3:60922561-60922580 None:intergenic 25.0%
! TAGACAAGGAATATTTGTAT+AGG - chr5_3:60923012-60923031 Msa0822500:intron 25.0%
! AGACAAGGAATATTTGTATA+GGG - chr5_3:60923013-60923032 Msa0822500:intron 25.0%
! AAAGCAATAAAGAACCATAA+AGG + chr5_3:60923059-60923078 None:intergenic 25.0%
! TTTATGGTTCTTTATTGCTT+TGG - chr5_3:60923058-60923077 Msa0822500:intron 25.0%
!!! AAAATGCTGTTTTACTCAAT+AGG - chr5_3:60923091-60923110 Msa0822500:intron 25.0%
! TTCAACTATAACAGAAATAG+CGG - chr5_3:60923175-60923194 Msa0822500:intron 25.0%
!!! AGAAGGTATGCTTTAATTTT+TGG - chr5_3:60923336-60923355 Msa0822500:intron 25.0%
! TACAAAATGCTATCAAATAG+AGG - chr5_3:60923507-60923526 Msa0822500:intron 25.0%
!!! AAATTGTTTGTTGTAGCTAA+AGG - chr5_3:60923653-60923672 Msa0822500:intron 25.0%
! GAGTACGAAGAAAAAATTAT+GGG - chr5_3:60923675-60923694 Msa0822500:intron 25.0%
!!! TGAATTGGAATATCGATTTT+CGG - chr5_3:60924023-60924042 Msa0822500:intron 25.0%
! TTCATAAGAAGATTTGATTC+GGG + chr5_3:60924052-60924071 None:intergenic 25.0%
!!! TGTTGCTTGTTTTTACTTAA+TGG + chr5_3:60924084-60924103 None:intergenic 25.0%
! AGGATTTATCATAATGAATC+AGG - chr5_3:60924282-60924301 Msa0822500:intron 25.0%
! AATTAAATGGAAACTTCAGA+TGG - chr5_3:60924450-60924469 Msa0822500:intron 25.0%
!! TATGAATTATGAGTTCGTTT+TGG - chr5_3:60924486-60924505 Msa0822500:intron 25.0%
AAAGTTTCAAACCCAACAAA+AGG + chr5_3:60919053-60919072 None:intergenic 30.0%
TGAAAACACAGAGAATAGTT+TGG - chr5_3:60919219-60919238 Msa0822500:exon 30.0%
GGAAAAGTTAATTACAGTCT+CGG + chr5_3:60919314-60919333 None:intergenic 30.0%
TTTGTAATTCAAATGTGCTG+TGG - chr5_3:60919458-60919477 Msa0822500:CDS 30.0%
TTGTAATTCAAATGTGCTGT+GGG - chr5_3:60919459-60919478 Msa0822500:CDS 30.0%
TTGTAATTCAAATGCGTTGT+GGG - chr5_3:60919511-60919530 Msa0822500:CDS 30.0%
ATGAATCATATTAGAACCCA+AGG + chr5_3:60920353-60920372 None:intergenic 30.0%
TTTATTTCGGTGAATTACAG+TGG - chr5_3:60920414-60920433 Msa0822500:CDS 30.0%
TTATTTCGGTGAATTACAGT+GGG - chr5_3:60920415-60920434 Msa0822500:CDS 30.0%
GGGTCATACAAATCATATAT+TGG - chr5_3:60920505-60920524 Msa0822500:intron 30.0%
AACTTCCTCATTTAGATATC+GGG - chr5_3:60920566-60920585 Msa0822500:intron 30.0%
ATGAAATTAAAAACAAGGCG+AGG + chr5_3:60920690-60920709 None:intergenic 30.0%
!! TTTTCCTTTTAGGAACCTAA+CGG + chr5_3:60920823-60920842 None:intergenic 30.0%
AATTCTTGCTAAAACTCGTA+AGG - chr5_3:60921226-60921245 Msa0822500:intron 30.0%
! TCATGCCCTGTTTAAAATTA+TGG - chr5_3:60921261-60921280 Msa0822500:intron 30.0%
! CATGCCCTGTTTAAAATTAT+GGG - chr5_3:60921262-60921281 Msa0822500:intron 30.0%
GTTCTTGCTTTCCATTAAAA+TGG - chr5_3:60921457-60921476 Msa0822500:intron 30.0%
!! AATTTCTTTAGAACATTCCG+AGG + chr5_3:60921692-60921711 None:intergenic 30.0%
GGATGATTTAACAATCATGA+AGG - chr5_3:60921783-60921802 Msa0822500:intron 30.0%
GATAGAACAAACCAAAATGA+GGG + chr5_3:60921813-60921832 None:intergenic 30.0%
AGATAGAACAAACCAAAATG+AGG + chr5_3:60921814-60921833 None:intergenic 30.0%
GTACTGAAGGGAAAAATATA+AGG + chr5_3:60921891-60921910 None:intergenic 30.0%
TGCAGATTAAGATTGAAACA+CGG + chr5_3:60921913-60921932 None:intergenic 30.0%
TCATACCTTATACTGTTAGA+AGG - chr5_3:60922101-60922120 Msa0822500:intron 30.0%
ATGTTCCTTCTAACAGTATA+AGG + chr5_3:60922109-60922128 None:intergenic 30.0%
CTCATTATGATTCAACAAAC+TGG + chr5_3:60922666-60922685 None:intergenic 30.0%
!! CAGTTTGTTGAATCATAATG+AGG - chr5_3:60922664-60922683 Msa0822500:intron 30.0%
ATGCACTGAACAAAAGAAAT+AGG - chr5_3:60922701-60922720 Msa0822500:intron 30.0%
ATACAAGCAATGTAGTAACA+AGG + chr5_3:60922732-60922751 None:intergenic 30.0%
ATTTGTATAGGGATGTAGAT+CGG - chr5_3:60923024-60923043 Msa0822500:intron 30.0%
ATAGGAAACACTAAGAGTTA+AGG - chr5_3:60923109-60923128 Msa0822500:intron 30.0%
!! AGGTATGCTTTAATTTTTGG+CGG - chr5_3:60923339-60923358 Msa0822500:intron 30.0%
CAACTCTTGAAAAACTGTTT+CGG - chr5_3:60923375-60923394 Msa0822500:intron 30.0%
TATTTAACAACATTGGCCAA+GGG + chr5_3:60923409-60923428 None:intergenic 30.0%
TAACCGCTATTTAACAACAT+TGG + chr5_3:60923416-60923435 None:intergenic 30.0%
TTGTTAAATAGCGGTTATAG+TGG - chr5_3:60923419-60923438 Msa0822500:intron 30.0%
CTATCAAATAGAGGTTATAG+CGG - chr5_3:60923516-60923535 Msa0822500:CDS 30.0%
! TTGTCGATTGTGGAAAATAA+CGG + chr5_3:60923578-60923597 None:intergenic 30.0%
GGAGTACGAAGAAAAAATTA+TGG - chr5_3:60923674-60923693 Msa0822500:intron 30.0%
ATTAACAAAGCTTCAAGCAA+GGG + chr5_3:60923986-60924005 None:intergenic 30.0%
TATTAACAAAGCTTCAAGCA+AGG + chr5_3:60923987-60924006 None:intergenic 30.0%
!! GCTTGAAGCTTTGTTAATAA+CGG - chr5_3:60923988-60924007 Msa0822500:intron 30.0%
CGGTTATCAAAATTGTGAAT+TGG - chr5_3:60924008-60924027 Msa0822500:intron 30.0%
CAAATGATAGAAAAAGTGGT+TGG - chr5_3:60924170-60924189 Msa0822500:intron 30.0%
TACAAAGTTGACAAAAAACG+TGG - chr5_3:60924196-60924215 Msa0822500:intron 30.0%
GATACACATGTATCATAAGA+TGG - chr5_3:60924404-60924423 Msa0822500:intron 30.0%
! TTATCCACATTTTCTTCAGT+GGG + chr5_3:60924660-60924679 None:intergenic 30.0%
! TTTATCCACATTTTCTTCAG+TGG + chr5_3:60924661-60924680 None:intergenic 30.0%
ATGTTTGGTTGTTATCATCA+GGG + chr5_3:60924936-60924955 None:intergenic 30.0%
! TTTGCTATCTTGTACATGTT+TGG + chr5_3:60924951-60924970 None:intergenic 30.0%
TACACACTCAATCAACAAAA+TGG + chr5_3:60925004-60925023 None:intergenic 30.0%
TGTGTTATAATGACCTTGAA+AGG - chr5_3:60925065-60925084 Msa0822500:exon 30.0%
GTGTTATAATGACCTTGAAA+GGG - chr5_3:60925066-60925085 Msa0822500:exon 30.0%
CACAACGCATTTGAATTACA+AGG + chr5_3:60919512-60919531 None:intergenic 35.0%
CTTGTAATTCAAATGCGTTG+TGG - chr5_3:60919510-60919529 Msa0822500:CDS 35.0%
TGTGTTTGGATTGAAGGTTT+AGG - chr5_3:60919566-60919585 Msa0822500:CDS 35.0%
TTTGGATTGAAGGTTTAGGA+GGG - chr5_3:60919570-60919589 Msa0822500:intron 35.0%
ATAAGCTAGGTAACATTCGA+GGG + chr5_3:60919999-60920018 None:intergenic 35.0%
!!! TATTTTTTTGGTGACAGCTG+AGG - chr5_3:60920032-60920051 Msa0822500:intron 35.0%
! ATTCCATTTTCCCAGTTGTT+GGG + chr5_3:60920087-60920106 None:intergenic 35.0%
! TATTCCATTTTCCCAGTTGT+TGG + chr5_3:60920088-60920107 None:intergenic 35.0%
TGGGAAAATGGAATACAAGT+AGG - chr5_3:60920093-60920112 Msa0822500:intron 35.0%
AGGGAAAAGTAGTAACACTT+TGG - chr5_3:60920157-60920176 Msa0822500:intron 35.0%
ATTCACAGGAGATACAGTAA+TGG + chr5_3:60920279-60920298 None:intergenic 35.0%
CATGCTTACTTGAAATTCAC+AGG + chr5_3:60920293-60920312 None:intergenic 35.0%
! CTGTGAATTTCAAGTAAGCA+TGG - chr5_3:60920291-60920310 Msa0822500:CDS 35.0%
AAAGGATTATTTCCTATGCG+CGG - chr5_3:60920600-60920619 Msa0822500:intron 35.0%
AAGATGACTGCTTAGTTGTT+TGG - chr5_3:60920855-60920874 Msa0822500:CDS 35.0%
CAAAATATCTCTCTCTCAGA+AGG + chr5_3:60921027-60921046 None:intergenic 35.0%
! TGAGAGAGAGATATTTTGTG+AGG - chr5_3:60921029-60921048 Msa0822500:CDS 35.0%
! GAGAGAGAGATATTTTGTGA+GGG - chr5_3:60921030-60921049 Msa0822500:CDS 35.0%
AAGGAAGGAAAAATGCTTTG+TGG + chr5_3:60921056-60921075 None:intergenic 35.0%
CTGAAAATTTGGACGGAAAA+AGG + chr5_3:60921133-60921152 None:intergenic 35.0%
TAATAGGCTTCTTCTTGGAA+AGG - chr5_3:60921358-60921377 Msa0822500:intron 35.0%
AATAGGCTTCTTCTTGGAAA+GGG - chr5_3:60921359-60921378 Msa0822500:intron 35.0%
TAAGCTAAACTATGGTTCAG+CGG + chr5_3:60921389-60921408 None:intergenic 35.0%
AAGCTGTGAATTCCTTAAGT+GGG - chr5_3:60921608-60921627 Msa0822500:intron 35.0%
! GGGAATGGTTCTACAAAATT+AGG - chr5_3:60921628-60921647 Msa0822500:intron 35.0%
ATTTCTTTGCGAAATGCTCT+TGG - chr5_3:60921727-60921746 Msa0822500:intron 35.0%
AATGCATTCAGCTTTCATGA+TGG - chr5_3:60921847-60921866 Msa0822500:intron 35.0%
TTCCTTATCTTTGTCTGGTT+TGG - chr5_3:60921993-60922012 Msa0822500:intron 35.0%
ACACATCAAGAAGCAACAAA+AGG + chr5_3:60922032-60922051 None:intergenic 35.0%
GAAAGTAAAGACTAGAGAGA+TGG + chr5_3:60922080-60922099 None:intergenic 35.0%
TTCAATCACTCTTAGTATCC+TGG - chr5_3:60922141-60922160 Msa0822500:intron 35.0%
ATTCAATCGTCTTCATTGAC+TGG - chr5_3:60922171-60922190 Msa0822500:intron 35.0%
!! TATCCAAGCTTAGCTTTGAT+TGG - chr5_3:60922501-60922520 Msa0822500:CDS 35.0%
TATCCAATCAAAGCTAAGCT+TGG + chr5_3:60922507-60922526 None:intergenic 35.0%
! AACGGTTCAATTTTTCCCTT+CGG - chr5_3:60922758-60922777 Msa0822500:intron 35.0%
! GTTCTCTTGTTTCGAGAATA+AGG - chr5_3:60922854-60922873 Msa0822500:intron 35.0%
TTTCGAGAATAAGGAAGTGA+AGG - chr5_3:60922863-60922882 Msa0822500:intron 35.0%
TTCGAGAATAAGGAAGTGAA+GGG - chr5_3:60922864-60922883 Msa0822500:intron 35.0%
!! AAGGGAAAAAAAAGTGTCAC+TGG - chr5_3:60922882-60922901 Msa0822500:intron 35.0%
!! AGGGAAAAAAAAGTGTCACT+GGG - chr5_3:60922883-60922902 Msa0822500:intron 35.0%
AACACTAAGAGTTAAGGATG+AGG - chr5_3:60923115-60923134 Msa0822500:intron 35.0%
CTTATACTATGGATGAGCAA+CGG - chr5_3:60923246-60923265 Msa0822500:intron 35.0%
CTATTTAACAACATTGGCCA+AGG + chr5_3:60923410-60923429 None:intergenic 35.0%
TGGCCAATGTTGTTAAATAG+CGG - chr5_3:60923410-60923429 Msa0822500:intron 35.0%
! GATTTGTTCAAATTCCGCTA+CGG + chr5_3:60923460-60923479 None:intergenic 35.0%
CTATTAAGGAGGCAAATATG+TGG - chr5_3:60923742-60923761 Msa0822500:intron 35.0%
! TGCTAAAAGCACAACTTCAA+AGG - chr5_3:60923940-60923959 Msa0822500:intron 35.0%
ATGAATCACCATCTATCCTT+TGG + chr5_3:60924231-60924250 None:intergenic 35.0%
TCTTGAATCCTGATTCATTG+TGG + chr5_3:60924313-60924332 None:intergenic 35.0%
TATATGCCAGCTATGAAATG+CGG - chr5_3:60924516-60924535 Msa0822500:intron 35.0%
CATGTTTGGTTGTTATCATC+AGG + chr5_3:60924937-60924956 None:intergenic 35.0%
CGTAGATCAACAACTCTTGT+CGG + chr5_3:60919083-60919102 None:intergenic 40.0%
AGTTGTTGATCTACGCCTTA+TGG - chr5_3:60919088-60919107 Msa0822500:three_prime_UTR 40.0%
TTCTGGTAGAAATCTGTTGC+AGG - chr5_3:60919270-60919289 Msa0822500:CDS 40.0%
TCTGGTAGAAATCTGTTGCA+GGG - chr5_3:60919271-60919290 Msa0822500:CDS 40.0%
TTACGGTGTGTTTGGATTGA+AGG - chr5_3:60919560-60919579 Msa0822500:CDS 40.0%
GTTTGGATTGAAGGTTTAGG+AGG - chr5_3:60919569-60919588 Msa0822500:intron 40.0%
TTGGATTGAAGGTTTAGGAG+GGG - chr5_3:60919571-60919590 Msa0822500:intron 40.0%
CATAAGCTAGGTAACATTCG+AGG + chr5_3:60920000-60920019 None:intergenic 40.0%
AAGAAATGAGCCAACTGTCA+AGG - chr5_3:60920226-60920245 Msa0822500:CDS 40.0%
AGAAATGAGCCAACTGTCAA+GGG - chr5_3:60920227-60920246 Msa0822500:CDS 40.0%
AGAATTGTTCCCTTGACAGT+TGG + chr5_3:60920239-60920258 None:intergenic 40.0%
! CCAAGGCACCAAGTAAAATA+GGG + chr5_3:60920336-60920355 None:intergenic 40.0%
!!! CCTATTTTACTTGGTGCCTT+GGG - chr5_3:60920334-60920353 Msa0822500:CDS 40.0%
ATGCAGCATCCATCATACTT+CGG + chr5_3:60920444-60920463 None:intergenic 40.0%
TATCGGGACACCACAAAAAA+AGG - chr5_3:60920582-60920601 Msa0822500:intron 40.0%
AAAAACAAGGCGAGGAAAGT+CGG + chr5_3:60920682-60920701 None:intergenic 40.0%
! TAGGAACCTAACGGAGTTTT+TGG + chr5_3:60920814-60920833 None:intergenic 40.0%
AACTCCGTTAGGTTCCTAAA+AGG - chr5_3:60920816-60920835 Msa0822500:intron 40.0%
TGACTGCTTAGTTGTTTGGT+AGG - chr5_3:60920859-60920878 Msa0822500:CDS 40.0%
TTGGTAGGAGAGGAAACATA+TGG - chr5_3:60920874-60920893 Msa0822500:CDS 40.0%
AATATCTCTCTCTCAGAAGG+AGG + chr5_3:60921024-60921043 None:intergenic 40.0%
CACGTTAATAGGCTTCTTCT+TGG - chr5_3:60921353-60921372 Msa0822500:intron 40.0%
AAGCTAAACTATGGTTCAGC+GGG + chr5_3:60921388-60921407 None:intergenic 40.0%
!!! AGCTTTTAGAACCAACTGAG+TGG + chr5_3:60921581-60921600 None:intergenic 40.0%
GAAGCTGTGAATTCCTTAAG+TGG - chr5_3:60921607-60921626 Msa0822500:intron 40.0%
GTGAATTCCTTAAGTGGGAA+TGG - chr5_3:60921613-60921632 Msa0822500:intron 40.0%
TGTAGAACCATTCCCACTTA+AGG + chr5_3:60921623-60921642 None:intergenic 40.0%
CTCTTGGAATGATGCCAAAT+AGG - chr5_3:60921743-60921762 Msa0822500:intron 40.0%
ATGCCAAATAGGACTACTGA+TGG - chr5_3:60921754-60921773 Msa0822500:intron 40.0%
!! ATGAAGGTACACCCTCATTT+TGG - chr5_3:60921799-60921818 Msa0822500:intron 40.0%
! GATTGAAACACGGTACTGAA+GGG + chr5_3:60921903-60921922 None:intergenic 40.0%
! AGATTGAAACACGGTACTGA+AGG + chr5_3:60921904-60921923 None:intergenic 40.0%
GTCCAAACCAGACAAAGATA+AGG + chr5_3:60921998-60922017 None:intergenic 40.0%
GACGATTGAATTGTTTGTCC+AGG + chr5_3:60922162-60922181 None:intergenic 40.0%
ATTGACTGGAGGTTTAAGAG+AGG - chr5_3:60922185-60922204 Msa0822500:intron 40.0%
CTTAATGAATGAAAAGGGGC+CGG - chr5_3:60922242-60922261 Msa0822500:intron 40.0%
TATACAGTCTCAGGTCTACA+TGG - chr5_3:60922267-60922286 Msa0822500:intron 40.0%
CAATGCATCGAATTGAACAG+TGG - chr5_3:60922611-60922630 Msa0822500:intron 40.0%
AACTGGATTCAGCCATAATG+TGG + chr5_3:60922649-60922668 None:intergenic 40.0%
!! CTACAAACTCTAAAGCCGAA+GGG + chr5_3:60922776-60922795 None:intergenic 40.0%
!! TCTACAAACTCTAAAGCCGA+AGG + chr5_3:60922777-60922796 None:intergenic 40.0%
!! TTCGGCTTTAGAGTTTGTAG+AGG - chr5_3:60922776-60922795 Msa0822500:intron 40.0%
AACAAACCAGCGATACAAAG+GGG + chr5_3:60922802-60922821 None:intergenic 40.0%
CAACAAACCAGCGATACAAA+GGG + chr5_3:60922803-60922822 None:intergenic 40.0%
GGATGAGGAGCTACAAAATT+TGG - chr5_3:60923130-60923149 Msa0822500:intron 40.0%
! AAAATTTGGCTCGAGACCTT+CGG - chr5_3:60923144-60923163 Msa0822500:intron 40.0%
! AGCATCTGCTGCTTATACTA+TGG - chr5_3:60923235-60923254 Msa0822500:intron 40.0%
! AAAAGATTCTGAGAAGCAGC+AGG - chr5_3:60923301-60923320 Msa0822500:intron 40.0%
! AGCTACATTGTTGTCGATTG+TGG + chr5_3:60923588-60923607 None:intergenic 40.0%
AAATATGTGGCGTACTGAAC+TGG - chr5_3:60923755-60923774 Msa0822500:intron 40.0%
AATATGTGGCGTACTGAACT+GGG - chr5_3:60923756-60923775 Msa0822500:intron 40.0%
AGAAGCAACTGTAGTAAGAG+CGG - chr5_3:60923806-60923825 Msa0822500:intron 40.0%
CTTTATCCTAGCTTCAGCAT+TGG + chr5_3:60923856-60923875 None:intergenic 40.0%
CAATGCTGAAGCTAGGATAA+AGG - chr5_3:60923854-60923873 Msa0822500:intron 40.0%
AAGTTGACAAAAAACGTGGC+AGG - chr5_3:60924200-60924219 Msa0822500:intron 40.0%
GGTGATTCATCAGAGTGAAT+TGG - chr5_3:60924241-60924260 Msa0822500:intron 40.0%
TGATCCCACTGAAGAAAATG+TGG - chr5_3:60924653-60924672 Msa0822500:intron 40.0%
!! GGTTTGCTCTAGAAACACTT+AGG + chr5_3:60924689-60924708 None:intergenic 40.0%
TGTGAACTACATTCTCTGCA+GGG + chr5_3:60924716-60924735 None:intergenic 40.0%
ATGTGAACTACATTCTCTGC+AGG + chr5_3:60924717-60924736 None:intergenic 40.0%
TGCAGAGAATGTAGTTCACA+TGG - chr5_3:60924716-60924735 Msa0822500:intron 40.0%
GTAAACAACATTCAGCCAGT+TGG - chr5_3:60924750-60924769 Msa0822500:intron 40.0%
ATCAATCATCACCACGAACA+AGG - chr5_3:60924891-60924910 Msa0822500:CDS 40.0%
AAGAGTTTGATCCTTGTTCG+TGG + chr5_3:60924905-60924924 None:intergenic 40.0%
!! GAAAAAGGTACTCCCTTTCA+AGG + chr5_3:60925081-60925100 None:intergenic 40.0%
GTCTCGGATCTCTTAAGAAG+TGG + chr5_3:60919298-60919317 None:intergenic 45.0%
TCCAAACACACCGTAAGTGT+CGG + chr5_3:60919556-60919575 None:intergenic 45.0%
ATTGAAGGTTTAGGAGGGGA+AGG - chr5_3:60919575-60919594 Msa0822500:intron 45.0%
TTGAAGGTTTAGGAGGGGAA+GGG - chr5_3:60919576-60919595 Msa0822500:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr5_3:60919779-60919798 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr5_3:60919783-60919802 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG + chr5_3:60919789-60919808 None:intergenic 45.0%
! ACACTAAGGGTGTGTTTGGA+TGG + chr5_3:60919793-60919812 None:intergenic 45.0%
TGACATGTGTCGGACACTAA+GGG + chr5_3:60919806-60919825 None:intergenic 45.0%
!! ATGAAGCACCGACACAAACA+GGG + chr5_3:60919904-60919923 None:intergenic 45.0%
!! TATGAAGCACCGACACAAAC+AGG + chr5_3:60919905-60919924 None:intergenic 45.0%
! TTTGGTGACAGCTGAGGAAA+TGG - chr5_3:60920038-60920057 Msa0822500:intron 45.0%
TGAGGAAATGGAACGAACGT+TGG - chr5_3:60920050-60920069 Msa0822500:intron 45.0%
GAGGAAATGGAACGAACGTT+GGG - chr5_3:60920051-60920070 Msa0822500:intron 45.0%
TGATCTTGGACCCAACAACT+GGG - chr5_3:60920074-60920093 Msa0822500:intron 45.0%
!!! CCCTATTTTACTTGGTGCCT+TGG - chr5_3:60920333-60920352 Msa0822500:CDS 45.0%
! CCCAAGGCACCAAGTAAAAT+AGG + chr5_3:60920337-60920356 None:intergenic 45.0%
GGTGTCCCGATATCTAAATG+AGG + chr5_3:60920574-60920593 None:intergenic 45.0%
AAAACAAGGCGAGGAAAGTC+GGG + chr5_3:60920681-60920700 None:intergenic 45.0%
GCTTAGTTGTTTGGTAGGAG+AGG - chr5_3:60920864-60920883 Msa0822500:CDS 45.0%
TCCTTCCTTGCTCACTGTTA+CGG - chr5_3:60921067-60921086 Msa0822500:intron 45.0%
CGAAAAACTCCTCCGTCATT+TGG + chr5_3:60921097-60921116 None:intergenic 45.0%
GGACCATCAGTAGTCCTATT+TGG + chr5_3:60921760-60921779 None:intergenic 45.0%
TAGGACTACTGATGGTCCTA+TGG - chr5_3:60921762-60921781 Msa0822500:intron 45.0%
! AGCTTTCATGATGGTGATGC+AGG - chr5_3:60921856-60921875 Msa0822500:intron 45.0%
! GCTTTCATGATGGTGATGCA+GGG - chr5_3:60921857-60921876 Msa0822500:intron 45.0%
!! TTGTCTGGTTTGGACTTTGC+TGG - chr5_3:60922003-60922022 Msa0822500:intron 45.0%
! CAATCGTCTTCATTGACTGG+AGG - chr5_3:60922174-60922193 Msa0822500:intron 45.0%
GGTTTAAGAGAGGCAAGGAT+AGG - chr5_3:60922195-60922214 Msa0822500:intron 45.0%
! CGGCCCCTTTTCATTCATTA+AGG + chr5_3:60922244-60922263 None:intergenic 45.0%
AGACCTGAGACTGTATATGC+CGG + chr5_3:60922264-60922283 None:intergenic 45.0%
ATCGAATTGAACAGTGGCTG+TGG - chr5_3:60922617-60922636 Msa0822500:intron 45.0%
CCAACAAACCAGCGATACAA+AGG + chr5_3:60922804-60922823 None:intergenic 45.0%
!! CCTTTGTATCGCTGGTTTGT+TGG - chr5_3:60922801-60922820 Msa0822500:intron 45.0%
CTCTGACCTTCATACACTTC+TGG - chr5_3:60922826-60922845 Msa0822500:intron 45.0%
! CGCAAACCAGAAGTGTATGA+AGG + chr5_3:60922835-60922854 None:intergenic 45.0%
ATTGTGGGGCTTGAATCTAG+TGG - chr5_3:60922928-60922947 Msa0822500:intron 45.0%
AGGGATGTAGATCGGTATCT+TGG - chr5_3:60923032-60923051 Msa0822500:intron 45.0%
GGGATGTAGATCGGTATCTT+GGG - chr5_3:60923033-60923052 Msa0822500:intron 45.0%
ATCGGTATCTTGGGCCTTTA+TGG - chr5_3:60923042-60923061 Msa0822500:intron 45.0%
! AAATTTGGCTCGAGACCTTC+GGG - chr5_3:60923145-60923164 Msa0822500:intron 45.0%
TGTTTCGGATGAATGACCCT+TGG - chr5_3:60923390-60923409 Msa0822500:intron 45.0%
AATAGCAGCATCTCTCTGGT+CGG + chr5_3:60923727-60923746 None:intergenic 45.0%
CCTTAATAGCAGCATCTCTC+TGG + chr5_3:60923731-60923750 None:intergenic 45.0%
CCAGAGAGATGCTGCTATTA+AGG - chr5_3:60923728-60923747 Msa0822500:intron 45.0%
GAGAGATGCTGCTATTAAGG+AGG - chr5_3:60923731-60923750 Msa0822500:intron 45.0%
TGTAGTAAGAGCGGAAGAGA+AGG - chr5_3:60923815-60923834 Msa0822500:intron 45.0%
AGCTGTACAGAGAGAATCAG+TGG - chr5_3:60923878-60923897 Msa0822500:CDS 45.0%
AGTGGCAACAAAAGAGAAGC+AGG - chr5_3:60923896-60923915 Msa0822500:CDS 45.0%
AGGCTACACCAAAGGATAGA+TGG - chr5_3:60924220-60924239 Msa0822500:intron 45.0%
AGGATCGACCACAATGAATC+AGG - chr5_3:60924302-60924321 Msa0822500:intron 45.0%
CTACATTCTCTGCAGGGATA+GGG + chr5_3:60924710-60924729 None:intergenic 45.0%
ACTACATTCTCTGCAGGGAT+AGG + chr5_3:60924711-60924730 None:intergenic 45.0%
! CTGGCTGAATGTTGTTTACC+TGG + chr5_3:60924749-60924768 None:intergenic 45.0%
CAACGAATGGAGCGATATTC+AGG - chr5_3:60924776-60924795 Msa0822500:intron 45.0%
ATATTCAGGCTACAGAGGCA+AGG - chr5_3:60924790-60924809 Msa0822500:intron 45.0%
AAGCTGCTTCCATCAGTTTC+TGG + chr5_3:60924843-60924862 None:intergenic 45.0%
AGAAACTGATGGAAGCAGCT+TGG - chr5_3:60924842-60924861 Msa0822500:intron 45.0%
AAGCAGCTTGGATATTCCAG+TGG - chr5_3:60924854-60924873 Msa0822500:intron 45.0%
! TCGTGGTGATGATTGATACC+TGG + chr5_3:60924888-60924907 None:intergenic 45.0%
GTTGTTATCATCAGGGCTGA+TGG + chr5_3:60924929-60924948 None:intergenic 45.0%
!! TTAATAAAAAAAAAAAAAAG+AGG + chr5_3:60919335-60919354 None:intergenic 5.0%
!!! TTTTTTTAAAATAAATTAAG+TGG - chr5_3:60919646-60919665 Msa0822500:intron 5.0%
!!! TTTATATTTTTATAATTTTC+GGG - chr5_3:60920485-60920504 Msa0822500:CDS 5.0%
TCTACGCCTTATGGCTTCTC+CGG - chr5_3:60919097-60919116 Msa0822500:three_prime_UTR 50.0%
!! AGAGTACCGGAGAAGCCATA+AGG + chr5_3:60919106-60919125 None:intergenic 50.0%
! GAGAGAGAGAGAGAGAGTAC+CGG + chr5_3:60919119-60919138 None:intergenic 50.0%
!! CTCTGAAGCACCGACACTTA+CGG - chr5_3:60919543-60919562 Msa0822500:CDS 50.0%
ACCGACACTTACGGTGTGTT+TGG - chr5_3:60919552-60919571 Msa0822500:CDS 50.0%
TTGGATGGAGGGTTTAGGAG+GGG + chr5_3:60919778-60919797 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr5_3:60919780-60919799 None:intergenic 50.0%
! CTAAGGGTGTGTTTGGATGG+AGG + chr5_3:60919790-60919809 None:intergenic 50.0%
! TCGGACACTAAGGGTGTGTT+TGG + chr5_3:60919797-60919816 None:intergenic 50.0%
CTGACATGTGTCGGACACTA+AGG + chr5_3:60919807-60919826 None:intergenic 50.0%
ATGTGTCGCACACAAAGTGC+CGG + chr5_3:60919832-60919851 None:intergenic 50.0%
GTTAGCGTCCCTGTTTGTGT+CGG - chr5_3:60919893-60919912 Msa0822500:intron 50.0%
GAACGAACGTTGGGTGATCT+TGG - chr5_3:60920060-60920079 Msa0822500:intron 50.0%
GTGATCTTGGACCCAACAAC+TGG - chr5_3:60920073-60920092 Msa0822500:intron 50.0%
GGACCCAACAACTGGGAAAA+TGG - chr5_3:60920081-60920100 Msa0822500:intron 50.0%
!! AGTGGGCTACCGAAGTATGA+TGG - chr5_3:60920432-60920451 Msa0822500:CDS 50.0%
AAACAAGGCGAGGAAAGTCG+GGG + chr5_3:60920680-60920699 None:intergenic 50.0%
CTCGAGCCAAAAACTCCGTT+AGG - chr5_3:60920805-60920824 Msa0822500:intron 50.0%
CCTTCCTTGCTCACTGTTAC+GGG - chr5_3:60921068-60921087 Msa0822500:intron 50.0%
TGTTACGGGACGCCAAATGA+CGG - chr5_3:60921082-60921101 Msa0822500:intron 50.0%
TAGAACCAACTGAGTGGCAC+TGG + chr5_3:60921575-60921594 None:intergenic 50.0%
ACATTCCGAGGCTGTTGAGT+TGG + chr5_3:60921680-60921699 None:intergenic 50.0%
CTGGAGGTTTAAGAGAGGCA+AGG - chr5_3:60922190-60922209 Msa0822500:intron 50.0%
AGGTCTACATGGTAGCAGCT+AGG - chr5_3:60922278-60922297 Msa0822500:intron 50.0%
ATTGAACAGTGGCTGTGGCA+AGG - chr5_3:60922622-60922641 Msa0822500:intron 50.0%
CTGTGGCAAGGTCCACATTA+TGG - chr5_3:60922634-60922653 Msa0822500:intron 50.0%
GGGCTTGAATCTAGTGGCAA+AGG - chr5_3:60922934-60922953 Msa0822500:intron 50.0%
TAGTTGAATCACGTGCCCGA+AGG + chr5_3:60923163-60923182 None:intergenic 50.0%
! AGATTCTGAGAAGCAGCAGG+AGG - chr5_3:60923304-60923323 Msa0822500:intron 50.0%
GCTATAGCGCTTTACCGTAG+CGG - chr5_3:60923443-60923462 Msa0822500:intron 50.0%
TAAGAGCGGAAGAGAAGGTC+AGG - chr5_3:60923820-60923839 Msa0822500:intron 50.0%
AAGAGCGGAAGAGAAGGTCA+GGG - chr5_3:60923821-60923840 Msa0822500:intron 50.0%
CAACTTCAAAGGTCAGCGTC+TGG - chr5_3:60923951-60923970 Msa0822500:intron 50.0%
GGACTCGATCGTAGTGTATC+AGG - chr5_3:60924262-60924281 Msa0822500:intron 50.0%
GATGCTCCGCATTTCATAGC+TGG + chr5_3:60924525-60924544 None:intergenic 50.0%
AGTTCACATGGCAACAGACC+AGG - chr5_3:60924728-60924747 Msa0822500:intron 50.0%
!! AGCCAGTTGGTGACAACGAA+TGG - chr5_3:60924763-60924782 Msa0822500:intron 50.0%
CTCCATTCGTTGTCACCAAC+TGG + chr5_3:60924768-60924787 None:intergenic 50.0%
GAGCGATATTCAGGCTACAG+AGG - chr5_3:60924785-60924804 Msa0822500:intron 50.0%
AGGCAAGGATAGCCGATGTA+AGG - chr5_3:60924805-60924824 Msa0822500:intron 50.0%
GGCAAGGATAGCCGATGTAA+GGG - chr5_3:60924806-60924825 Msa0822500:intron 50.0%
TGCTGCGACTTCCCTTACAT+CGG + chr5_3:60924820-60924839 None:intergenic 50.0%
GGTGATGATTGATACCTGGC+TGG + chr5_3:60924884-60924903 None:intergenic 50.0%
! CGTCAGCTAGCTTCTGCTTC+TGG - chr5_3:60919253-60919272 Msa0822500:CDS 55.0%
AAGGTTTAGGAGGGGAAGGG+AGG - chr5_3:60919579-60919598 Msa0822500:intron 55.0%
AGGTTTAGGAGGGGAAGGGA+GGG - chr5_3:60919580-60919599 Msa0822500:intron 55.0%
TGGAGGGTTTAGGAGGGGAA+GGG + chr5_3:60919773-60919792 None:intergenic 55.0%
ATGGAGGGTTTAGGAGGGGA+AGG + chr5_3:60919774-60919793 None:intergenic 55.0%
TGTCCGACACATGTCAGCAC+CGG - chr5_3:60919810-60919829 Msa0822500:intron 55.0%
CCCGTAACAGTGAGCAAGGA+AGG + chr5_3:60921071-60921090 None:intergenic 55.0%
! TCACACCAGTGCCACTCAGT+TGG - chr5_3:60921567-60921586 Msa0822500:intron 55.0%
TGCAGCCAACTCAACAGCCT+CGG - chr5_3:60921672-60921691 Msa0822500:intron 55.0%
TAGAGGCCCCTTTGTATCGC+TGG - chr5_3:60922793-60922812 Msa0822500:intron 55.0%
! GCAGGAGGTGTATGCACAGA+AGG - chr5_3:60923319-60923338 Msa0822500:intron 55.0%
AGAGAAGGTCAGGGTTGCTG+AGG - chr5_3:60923830-60923849 Msa0822500:intron 55.0%
CTGAGGCCAATGCTGAAGCT+AGG - chr5_3:60923847-60923866 Msa0822500:intron 55.0%
AACGTGGCAGGCTACACCAA+AGG - chr5_3:60924212-60924231 Msa0822500:intron 55.0%
GTCGCAGCACCAGAAACTGA+TGG - chr5_3:60924831-60924850 Msa0822500:intron 55.0%
! ATTCCAGTGGTTAGCCAGCC+AGG - chr5_3:60924867-60924886 Msa0822500:CDS 55.0%
! ATACCTGGCTGGCTAACCAC+TGG + chr5_3:60924873-60924892 None:intergenic 55.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr5_3:60919581-60919600 Msa0822500:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr5_3:60919581-60919600 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr5_3:60919769-60919788 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr5_3:60919770-60919789 None:intergenic 60.0%
!! GTGCCGGTGCTGACATGTGT+CGG + chr5_3:60919816-60919835 None:intergenic 60.0%
TTCCTATGCGCGGAGACTCC+TGG - chr5_3:60920610-60920629 Msa0822500:intron 60.0%
TCCTGGTGCAGCTCGAGCAT+GGG - chr5_3:60920627-60920646 Msa0822500:intron 60.0%
GCGTCCCGTAACAGTGAGCA+AGG + chr5_3:60921075-60921094 None:intergenic 60.0%
TACGGGACGCCAAATGACGG+AGG - chr5_3:60921085-60921104 Msa0822500:intron 60.0%
GGGCCGGCATATACAGTCTC+AGG - chr5_3:60922258-60922277 Msa0822500:intron 60.0%
AGCAGCAGATGCTGCTGCCT+CGG + chr5_3:60923228-60923247 None:intergenic 60.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr5_3:60919584-60919603 Msa0822500:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr5_3:60919585-60919604 Msa0822500:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr5_3:60919585-60919604 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr5_3:60919584-60919603 None:intergenic 65.0%
CACCAGGAGTCTCCGCGCAT+AGG + chr5_3:60920615-60920634 None:intergenic 65.0%
CTCCTGGTGCAGCTCGAGCA+TGG - chr5_3:60920626-60920645 Msa0822500:intron 65.0%
ACCCATGCTCGAGCTGCACC+AGG + chr5_3:60920631-60920650 None:intergenic 65.0%
AGCAGATGCTGCTGCCTCGG+CGG + chr5_3:60923225-60923244 None:intergenic 65.0%
TGAGACTGCCGAAGCCGCCG+AGG - chr5_3:60923208-60923227 Msa0822500:intron 70.0%
TGCTGCTGCCTCGGCGGCTT+CGG + chr5_3:60923219-60923238 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 60918983 60925192 60918983 ID=Msa0822500;Name=Msa0822500
chr5_3 mRNA 60918983 60925192 60918983 ID=Msa0822500-mRNA-1;Parent=Msa0822500;Name=Msa0822500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=124|1|1|1|1|1|10|254|492
chr5_3 exon 60918983 60919585 60918983 ID=Msa0822500-mRNA-1:exon:18733;Parent=Msa0822500-mRNA-1
chr5_3 exon 60920214 60920506 60920214 ID=Msa0822500-mRNA-1:exon:18732;Parent=Msa0822500-mRNA-1
chr5_3 exon 60920835 60921062 60920835 ID=Msa0822500-mRNA-1:exon:18731;Parent=Msa0822500-mRNA-1
chr5_3 exon 60922371 60922599 60922371 ID=Msa0822500-mRNA-1:exon:18730;Parent=Msa0822500-mRNA-1
chr5_3 exon 60923513 60923594 60923513 ID=Msa0822500-mRNA-1:exon:18729;Parent=Msa0822500-mRNA-1
chr5_3 exon 60923710 60923741 60923710 ID=Msa0822500-mRNA-1:exon:18728;Parent=Msa0822500-mRNA-1
chr5_3 exon 60923872 60923955 60923872 ID=Msa0822500-mRNA-1:exon:18727;Parent=Msa0822500-mRNA-1
chr5_3 exon 60924065 60924126 60924065 ID=Msa0822500-mRNA-1:exon:18726;Parent=Msa0822500-mRNA-1
chr5_3 exon 60924857 60924964 60924857 ID=Msa0822500-mRNA-1:exon:18725;Parent=Msa0822500-mRNA-1
chr5_3 exon 60925057 60925192 60925057 ID=Msa0822500-mRNA-1:exon:18724;Parent=Msa0822500-mRNA-1
chr5_3 five_prime_UTR 60925069 60925192 60925069 ID=Msa0822500-mRNA-1:five_prime_utr;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60925057 60925068 60925057 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60924857 60924964 60924857 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60924065 60924126 60924065 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60923872 60923955 60923872 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60923710 60923741 60923710 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60923513 60923594 60923513 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60922371 60922599 60922371 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60920835 60921062 60920835 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60920214 60920506 60920214 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 CDS 60919237 60919585 60919237 ID=Msa0822500-mRNA-1:cds;Parent=Msa0822500-mRNA-1
chr5_3 three_prime_UTR 60918983 60919236 60918983 ID=Msa0822500-mRNA-1:three_prime_utr;Parent=Msa0822500-mRNA-1
Gene Sequence

>Msa0822500

ATGGCTTCTCCGCGAGCTGTTGAAAACACAGAGAATAGTTTGGAGAAGATCAAGCGTCAGCTAGCTTCTGCTTCTGGTAGAAATCTGTTGCAGGGTCCACTTCTTAAGAGATCCGAGACTCTGAGGAAATGGAACGAACGTTGGGTGATCTTGGACCCAACAACTGGGAAAATGGAATACAAGTTAAGAAGAAATGAGCCAACTGTCAAGGGAACAATTCTATTTGACGCAAATAGCACCATTACTGTATCTCCTGTGAATTTCAATGGGCTACCGAAGTATGATGGATGCTGCATTTATATCGGGACACCACAAAAAAAGGATTATTTCCTATGCGCGGAGACTCCTGGTGCAGCTCGAGCATGGGTGTCAACATTGCATGCCACTCAGTTGGTTCTAAAAGCTCATAAAGAAGCTGTGAATTCCTTAAGTGGGAATGGTTCTACAAAATTAGGAACTGTCGCAACTGTTGTTGCTGCAGCCAACTCAACAGCCTCGGAATGTTCTAAAGAAATTGAAGCGGCAATGCAGATTTCTTTGCGAAATGCTCTTGGAATGATGCCAAATAGGACTACTGATGGTCCTATGGATGATTTAACAATCATGAAGGAAACACTAAGAGTTAAGGATGAGGAGCTACAAAATTTGGCTCGAGACCTTCGGGCACGTGATTCAACTATAACAGAAATAGCGGATAAATTATCTGAGACTGCCGAAGCCGCCGAGGCAGCAGCATCTGCTGCTTATACTATGGATGAGCAACGGAGAATTGTTTGTGCAGAAATTGAGCGTTTGAGAAAAGATTCTGAGAAGCAGCAGGAGGTGTATGCACAGAAGCTAAAGGAGTACGAAGAAAAAATTATGGGCTTAAGCAAAGAAAGAGAGCAATTAACCGACCAGAGAGATGCTGCTATTAAGGAGGCAAATATGTGGCGTACTGAACTGGGAAAAGCTAGAGAGCATGACGTGATCTTAGAAGCAACTGTAGTAAGAGCGGAAGAGAAGGTCAGGGTTGCTGAGGCCAATGCTGAAGCTAGGATAAAGGAAGCTGTACAGAGAGAATCAGTGGCAACAAAAGAGAAGCAGGAACTTCTTGCATATGTTAACATGCTAAAAGCACAACTTCAAAGGCAACACATTGATGCAACTCAAGTTGTTGAGAAGACAGAGTCATGCTCAGATACAAAGCATGTTGATCCCACTGAAGAAAATGTGGATAAAGCATGCCTAAGTGTTTCTAGAGCAAACCCTATCCCTGCAGAGAATGTAGTTCACATGGCAACAGACCAGGTAAACAACATTCAGCCAGTTGGTGACAACGAATGGAGCGATATTCAGGCTACAGAGGCAAGGATAGCCGATGTAAGGGAAGTCGCAGCACCAGAAACTGATGGAAGCAGCTTGGATATTCCAGTGGTTAGCCAGCCAGGTATCAATCATCACCACGAACAAGGATCAAACTCTTTCCATCAGCCCTGA

Protein sequence

>Msa0822500

MASPRAVENTENSLEKIKRQLASASGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKLRRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAWVSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRNALGMMPNRTTDGPMDDLTIMKETLRVKDEELQNLARDLRARDSTITEIADKLSETAEAAEAAASAAYTMDEQRRIVCAEIERLRKDSEKQQEVYAQKLKEYEEKIMGLSKEREQLTDQRDAAIKEANMWRTELGKAREHDVILEATVVRAEEKVRVAEANAEARIKEAVQRESVATKEKQELLAYVNMLKAQLQRQHIDATQVVEKTESCSDTKHVDPTEENVDKACLSVSRANPIPAENVVHMATDQVNNIQPVGDNEWSDIQATEARIADVREVAAPETDGSSLDIPVVSQPGINHHHEQGSNSFHQP*