AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858160 MtrunA17_Chr5g0436701 100.000 289 0 0 1 289 1 289 0.0 585
Msa0858160 MtrunA17_Chr3g0113211 93.080 289 20 0 1 289 1 289 0.0 550
Msa0858160 MtrunA17_Chr8g0386961 87.063 286 35 1 4 289 3 286 0.0 513
Msa0858160 MtrunA17_Chr5g0397391 84.615 286 42 1 4 289 3 286 1.69e-179 496
Msa0858160 MtrunA17_Chr4g0006001 81.034 290 53 2 1 289 1 289 5.03e-174 482
Msa0858160 MtrunA17_Chr7g0264111 73.256 258 62 2 32 283 16 272 3.82e-136 386
Msa0858160 MtrunA17_Chr1g0199731 71.910 267 68 3 23 283 7 272 2.80e-135 384
Msa0858160 MtrunA17_Chr2g0326621 69.318 264 73 2 32 288 17 279 2.58e-134 381
Msa0858160 MtrunA17_Chr3g0145671 71.984 257 71 1 32 288 14 269 6.61e-133 377
Msa0858160 MtrunA17_Chr4g0029071 68.382 272 79 3 23 288 7 277 5.16e-131 373
Msa0858160 MtrunA17_Chr6g0478191 39.149 235 127 6 55 285 21 243 1.44e-32 120
Msa0858160 MtrunA17_Chr2g0331261 36.364 231 132 5 50 277 15 233 1.32e-31 117
Msa0858160 MtrunA17_Chr1g0188771 37.069 232 127 7 55 281 21 238 1.61e-31 117
Msa0858160 MtrunA17_Chr8g0340161 36.910 233 130 6 50 277 12 232 1.00e-30 115
Msa0858160 MtrunA17_Chr5g0399341 35.841 226 129 5 55 277 19 231 1.10e-27 107
Msa0858160 MtrunA17_Chr4g0030861 33.333 237 143 5 44 277 10 234 4.76e-27 105
Msa0858160 MtrunA17_Chr1g0212671 33.333 243 135 7 44 277 10 234 1.40e-26 104
Msa0858160 MtrunA17_Chr7g0264961 33.878 245 141 8 45 283 11 240 2.19e-26 103
Msa0858160 MtrunA17_Chr1g0146161 35.135 222 125 7 55 273 19 224 2.24e-25 101
Msa0858160 MtrunA17_Chr7g0222791 34.052 232 126 7 55 277 21 234 5.73e-24 97.8
Msa0858160 MtrunA17_Chr1g0146171 35.345 232 119 10 55 277 19 228 6.45e-24 97.4
Msa0858160 MtrunA17_Chr5g0435051 27.481 262 159 6 25 275 2 243 1.18e-21 91.7
Msa0858160 MtrunA17_Chr2g0284631 30.093 216 129 6 58 270 94 290 1.31e-19 87.0
Msa0858160 MtrunA17_Chr8g0379901 30.126 239 144 8 53 287 37 256 1.08e-18 84.0
Msa0858160 MtrunA17_Chr5g0426131 30.131 229 143 7 50 277 32 244 1.78e-18 82.8
Msa0858160 MtrunA17_Chr2g0284591 32.407 216 124 6 58 270 39 235 2.45e-18 82.8
Msa0858160 MtrunA17_Chr7g0217331 28.139 231 143 7 53 280 35 245 4.60e-17 79.3
Msa0858160 MtrunA17_Chr4g0020781 32.474 194 105 6 90 277 18 191 6.29e-17 77.8
Msa0858160 MtrunA17_Chr3g0079421 27.803 223 142 4 58 277 25 231 7.49e-17 78.6
Msa0858160 MtrunA17_Chr2g0284611 31.674 221 129 6 53 270 36 237 8.81e-17 78.6
Msa0858160 MtrunA17_Chr8g0379911 28.448 232 143 8 52 279 35 247 1.27e-16 77.8
Msa0858160 MtrunA17_Chr4g0044201 26.923 234 137 7 58 287 38 241 1.29e-16 77.8
Msa0858160 MtrunA17_Chr4g0038591 31.183 186 107 7 102 272 95 274 3.11e-16 77.8
Msa0858160 MtrunA17_Chr2g0284581 31.019 216 127 7 58 270 41 237 4.15e-16 76.6
Msa0858160 MtrunA17_Chr4g0001221 26.923 234 143 7 37 270 68 273 1.71e-15 75.1
Msa0858160 MtrunA17_Chr4g0038611 28.889 180 115 4 102 270 32 209 6.46e-15 73.2
Msa0858160 MtrunA17_Chr2g0284601 32.995 197 110 7 78 270 11 189 7.11e-15 72.4
Msa0858160 MtrunA17_Chr2g0333771 29.167 216 128 7 59 270 84 278 2.59e-14 72.0
Msa0858160 MtrunA17_Chr1g0201331 26.667 225 147 6 59 282 78 285 7.41e-13 67.8
Msa0858160 MtrunA17_Chr1g0184541 26.667 225 146 6 52 275 59 265 2.09e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858160 AT4G00430.1 86.159 289 37 2 1 289 1 286 0.0 503
Msa0858160 AT2G45960.1 84.083 289 42 2 1 289 1 285 5.84e-179 494
Msa0858160 AT4G23400.1 85.121 289 40 2 1 289 1 286 2.19e-169 471
Msa0858160 AT3G61430.2 84.429 289 41 2 1 289 1 285 2.66e-169 470
Msa0858160 AT3G61430.1 84.429 289 41 2 1 289 1 285 2.66e-169 470
Msa0858160 AT1G01620.1 84.429 289 41 2 1 289 1 285 3.00e-168 468
Msa0858160 AT2G45960.2 83.398 259 39 2 1 259 1 255 6.19e-157 439
Msa0858160 AT2G45960.3 83.398 259 39 2 1 259 1 255 1.26e-155 436
Msa0858160 AT2G37180.1 72.243 263 66 3 32 288 14 275 2.29e-134 382
Msa0858160 AT2G37170.2 72.243 263 66 3 32 288 57 318 1.77e-133 381
Msa0858160 AT4G35100.1 72.374 257 70 1 32 288 15 270 4.07e-133 379
Msa0858160 AT4G35100.2 72.374 257 70 1 32 288 15 270 4.07e-133 379
Msa0858160 AT2G37170.1 72.243 263 66 3 32 288 14 275 4.80e-133 379
Msa0858160 AT3G53420.1 72.830 265 61 4 32 288 16 277 4.82e-133 379
Msa0858160 AT3G53420.2 72.830 265 61 4 32 288 16 277 4.82e-133 379
Msa0858160 AT2G16850.1 71.984 257 71 1 32 288 13 268 2.30e-131 374
Msa0858160 AT1G01620.2 86.916 214 27 1 76 289 1 213 4.71e-131 370
Msa0858160 AT3G54820.1 69.811 265 69 3 32 288 15 276 2.93e-130 371
Msa0858160 AT4G00430.2 82.488 217 35 2 1 217 1 214 2.26e-127 362
Msa0858160 AT5G60660.1 68.679 265 72 4 32 288 16 277 6.32e-127 363
Msa0858160 AT2G39010.1 67.300 263 79 2 32 288 15 276 2.03e-126 362
Msa0858160 AT2G39010.2 64.894 188 59 2 32 213 15 201 1.58e-81 245
Msa0858160 AT3G16240.1 37.168 226 127 5 55 277 19 232 2.05e-31 117
Msa0858160 AT5G47450.1 37.662 231 129 7 50 277 14 232 1.32e-30 115
Msa0858160 AT4G01470.1 35.593 236 137 5 45 277 11 234 3.86e-30 114
Msa0858160 AT1G73190.1 37.083 240 130 7 55 285 24 251 6.32e-30 114
Msa0858160 AT1G17810.1 35.146 239 134 7 55 284 24 250 8.82e-30 114
Msa0858160 AT4G17340.1 36.283 226 129 6 55 277 19 232 5.22e-27 106
Msa0858160 AT2G36830.1 32.389 247 136 8 44 279 10 236 1.96e-26 104
Msa0858160 AT3G26520.1 32.231 242 137 7 42 277 15 235 1.14e-25 102
Msa0858160 AT2G25810.1 35.652 230 130 7 55 281 19 233 7.08e-24 97.8
Msa0858160 AT3G47440.1 31.687 243 135 8 50 281 18 240 1.28e-22 94.4
Msa0858160 AT1G31885.1 29.150 247 154 6 26 270 22 249 6.76e-20 88.2
Msa0858160 AT4G19030.1 27.985 268 175 7 26 288 26 280 3.93e-19 85.9
Msa0858160 AT5G37820.2 29.032 217 128 7 58 269 82 277 2.39e-16 78.2
Msa0858160 AT5G37820.1 29.032 217 128 7 58 269 46 241 2.52e-16 77.8
Msa0858160 AT1G31885.2 29.082 196 129 4 77 270 8 195 5.84e-16 76.6
Msa0858160 AT4G18910.1 27.509 269 175 8 26 287 21 276 7.56e-16 76.6
Msa0858160 AT2G34390.1 26.071 280 178 9 6 277 2 260 1.83e-15 75.5
Msa0858160 AT4G10380.1 24.901 253 158 6 33 270 41 276 1.80e-12 67.0
Msa0858160 AT5G37810.1 27.189 217 132 7 58 269 46 241 1.98e-12 66.6
Msa0858160 AT1G80760.1 25.301 249 166 6 32 280 60 288 2.55e-12 66.6
Msa0858160 AT2G34390.2 26.667 225 145 7 58 277 9 218 4.11e-12 65.1

Find 95 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCAAGTGGTTGTCTTTC+TGG 0.098743 5_4:+55336454 None:intergenic
CAAGGAATTGCTTGGGCTTT+TGG 0.173907 5_4:-55336229 Msa0858160:CDS
TATTCTTGCAGTGGATCTTC+TGG 0.189510 5_4:-55334996 Msa0858160:intron
TTAATACCAGTTCCAGTAAT+TGG 0.193062 5_4:+55335186 None:intergenic
TTCTGGGTGGGACCATTTAT+TGG 0.238352 5_4:-55334979 Msa0858160:CDS
CGCTGTGTTCTTGGTTCACT+TGG 0.261822 5_4:-55335217 Msa0858160:CDS
TACTGCACCGCTGGAATATC+TGG 0.299359 5_4:-55336184 Msa0858160:intron
GCAAGAGCTGCTCCAATAAA+TGG 0.306781 5_4:+55334967 None:intergenic
TTTGAAGGAAAGACACGATT+TGG 0.322432 5_4:-55335551 Msa0858160:CDS
AATTGGGTTCGCTGTGTTCT+TGG 0.323972 5_4:-55335226 Msa0858160:CDS
AAACAGTGATATAAAGAAAA+AGG 0.328096 5_4:+55336305 None:intergenic
GTAATGTTATTATGATTATT+AGG 0.332200 5_4:-55334758 Msa0858160:three_prime_UTR
GGTGGCTCTTGATAATCCTT+AGG 0.333527 5_4:+55336409 None:intergenic
TCCCAAGTGGTTGTCTTTCT+GGG 0.348961 5_4:+55336455 None:intergenic
CTACATGGTGATGCAATGTT+TGG 0.359716 5_4:-55335606 Msa0858160:CDS
AGCCATCTGAACTGACTTCA+TGG 0.369669 5_4:-55336369 Msa0858160:CDS
AAAGAACAGGATGTGTCTTT+AGG 0.370646 5_4:-55336490 Msa0858160:CDS
ATTCTTGCAGTGGATCTTCT+GGG 0.373293 5_4:-55334995 Msa0858160:intron
CTCAAAACCATAGGAAAATT+AGG 0.381671 5_4:+55334707 None:intergenic
TTGGGTGCTATTTGTGGTGC+TGG 0.389900 5_4:-55335587 Msa0858160:CDS
TTGGCCACTATCCCAATTAC+TGG 0.392883 5_4:-55335198 Msa0858160:CDS
CATGAATCATGATAGTGTTA+AGG 0.404305 5_4:+55334579 None:intergenic
ATAAACCCAGCAGTGACATT+TGG 0.404529 5_4:-55335671 Msa0858160:CDS
TGTAAGACTGTGGGAATTCA+AGG 0.405446 5_4:-55336247 Msa0858160:CDS
TAAACCCAGCAGTGACATTT+GGG 0.405583 5_4:-55335670 Msa0858160:CDS
CAATGTTTGGGTGCTATTTG+TGG 0.409953 5_4:-55335593 Msa0858160:CDS
TAATACCAGTTCCAGTAATT+GGG 0.410603 5_4:+55335187 None:intergenic
GATAATCCTTAGGGTCATCT+TGG 0.412241 5_4:+55336419 None:intergenic
ACTATCCCAATTACTGGAAC+TGG 0.426227 5_4:-55335192 Msa0858160:CDS
GGTGCCAACTTTGTTGCTCC+TGG 0.427799 5_4:-55335515 Msa0858160:CDS
ATTTGATCACTTAGACTTGA+AGG 0.433397 5_4:+55334909 None:intergenic
AGCTCGTGTGTGATGATGTA+AGG 0.437615 5_4:-55334666 Msa0858160:three_prime_UTR
ATGAATCATGATAGTGTTAA+GGG 0.438702 5_4:+55334580 None:intergenic
TCATGGTCTTTCTACAGAGC+TGG 0.438821 5_4:-55336352 Msa0858160:CDS
TGGGAATTCAAGGAATTGCT+TGG 0.439167 5_4:-55336237 Msa0858160:CDS
AGCACCAAGACCGTCACCTT+TGG 0.443507 5_4:+55335487 None:intergenic
CTTCAACAAGGACCTTGGTT+GGG 0.451717 5_4:-55335133 Msa0858160:CDS
AATAGCCCAAATGTCACTGC+TGG 0.456045 5_4:+55335665 None:intergenic
GGGAATTCAAGGAATTGCTT+GGG 0.463084 5_4:-55336236 Msa0858160:CDS
TACATGGTGATGCAATGTTT+GGG 0.464448 5_4:-55335605 Msa0858160:CDS
GTGGCTCTTGATAATCCTTA+GGG 0.475436 5_4:+55336410 None:intergenic
ATTAACCCTGCTCGTAGTCT+TGG 0.478309 5_4:-55335168 Msa0858160:CDS
TGTGGTGCTGGTGTTGTGAA+AGG 0.479519 5_4:-55335575 Msa0858160:CDS
TCAAACAACGGTGCTGGTGG+TGG 0.481920 5_4:+55336391 None:intergenic
ATCAATCAAGACATGTTTGT+GGG 0.483810 5_4:-55334873 Msa0858160:three_prime_UTR
TCTTCAACAAGGACCTTGGT+TGG 0.493563 5_4:-55335134 Msa0858160:CDS
AAGAACACAGCGAACCCAAT+TGG 0.494251 5_4:+55335228 None:intergenic
GCTCTTGTTTACTGCACCGC+TGG 0.498639 5_4:-55336193 Msa0858160:CDS
GATGGCTCAAACAACGGTGC+TGG 0.510215 5_4:+55336385 None:intergenic
TTACATCATCACACACGAGC+TGG 0.513495 5_4:+55334668 None:intergenic
AGTTCCAGTAATTGGGATAG+TGG 0.513529 5_4:+55335194 None:intergenic
AGTTCAGATGGCTCAAACAA+CGG 0.521397 5_4:+55336379 None:intergenic
ATTATCTTCAACAAGGACCT+TGG 0.525491 5_4:-55335138 Msa0858160:CDS
TACTTGTGTTGTGTGAGTGA+AGG 0.530256 5_4:+55336562 None:intergenic
CAAACATGTCTTGATTGATC+AGG 0.530260 5_4:+55334877 None:intergenic
GACCATGAAGTCAGTTCAGA+TGG 0.532853 5_4:+55336367 None:intergenic
TTGCAGTGGATCTTCTGGGT+GGG 0.533501 5_4:-55334991 Msa0858160:intron
GTCTAAGTGATCAAATCAAA+CGG 0.537584 5_4:-55334902 Msa0858160:exon
CATGGTCTTTCTACAGAGCT+GGG 0.538255 5_4:-55336351 Msa0858160:CDS
GTTGCTCCTGGTTACACCAA+AGG 0.542015 5_4:-55335503 Msa0858160:CDS
GGTCTTGGTGCTGAAATTGT+TGG 0.547516 5_4:-55335476 Msa0858160:CDS
TCACTTAGACTTGAAGGGAA+TGG 0.553226 5_4:+55334915 None:intergenic
TATTTCCAACTCAAAACCAT+AGG 0.553587 5_4:+55334698 None:intergenic
GATCAATCAAGACATGTTTG+TGG 0.553787 5_4:-55334874 Msa0858160:three_prime_UTR
TACACCAAAGGTGACGGTCT+TGG 0.554395 5_4:-55335491 Msa0858160:CDS
CATGTGTGTGTGTTGAGTAA+TGG 0.554858 5_4:-55334730 Msa0858160:three_prime_UTR
TTTGATCACTTAGACTTGAA+GGG 0.559600 5_4:+55334910 None:intergenic
CCGTCACCTTTGGTGTAACC+AGG 0.566415 5_4:+55335497 None:intergenic
AGCATCGGTGGCTGAGAAGA+CGG 0.570780 5_4:+55335433 None:intergenic
GACAAGAGCATTGTTCTACA+TGG 0.572416 5_4:-55335621 Msa0858160:CDS
GCAGCACCAAGACTACGAGC+AGG 0.585086 5_4:+55335162 None:intergenic
GATTCTAAGTGTAAGACTGT+GGG 0.592644 5_4:-55336256 Msa0858160:CDS
GTGATGATGTAAGGGTGTGA+TGG 0.593539 5_4:-55334657 Msa0858160:three_prime_UTR
TCAAAGCCAAGATGACCCTA+AGG 0.594414 5_4:-55336425 Msa0858160:CDS
TCCCAGAAAGACAACCACTT+GGG 0.597140 5_4:-55336456 Msa0858160:CDS
ATAGCCCAAATGTCACTGCT+GGG 0.598118 5_4:+55335666 None:intergenic
CTTGCAGTGGATCTTCTGGG+TGG 0.604626 5_4:-55334992 Msa0858160:intron
CTTTGAGCTGCAATCCCAAG+TGG 0.615951 5_4:+55336442 None:intergenic
TTCCCAGAAAGACAACCACT+TGG 0.616137 5_4:-55336457 Msa0858160:CDS
CCTGGTTACACCAAAGGTGA+CGG 0.620526 5_4:-55335497 Msa0858160:CDS
AGCGCTACGTTTAGCATCGG+TGG 0.622224 5_4:+55335421 None:intergenic
GGCTCAAACAACGGTGCTGG+TGG 0.625378 5_4:+55336388 None:intergenic
TGATTCTAAGTGTAAGACTG+TGG 0.626711 5_4:-55336257 Msa0858160:CDS
ACACGATTTGGAGATCTGAA+AGG 0.635550 5_4:-55335539 Msa0858160:CDS
GTAACCAGGAGCAACAAAGT+TGG 0.636963 5_4:+55335511 None:intergenic
ACAGCGAACCCAATTGGCAA+TGG 0.642498 5_4:+55335234 None:intergenic
TGCTGCTATTATCTTCAACA+AGG 0.649253 5_4:-55335145 Msa0858160:CDS
GCTCGTGTGTGATGATGTAA+GGG 0.656142 5_4:-55334665 Msa0858160:three_prime_UTR
CAGCACCAAGACTACGAGCA+GGG 0.662928 5_4:+55335163 None:intergenic
CGATTTGGAGATCTGAAAGG+TGG 0.663827 5_4:-55335536 Msa0858160:CDS
TCTAGCGCTACGTTTAGCAT+CGG 0.680627 5_4:+55335418 None:intergenic
TTACGTGATCATCCCAACCA+AGG 0.707418 5_4:+55335121 None:intergenic
ATATATACCAGATATTCCAG+CGG 0.750509 5_4:+55336177 None:intergenic
TGGCTCTGATTACGACCACG+TGG 0.762119 5_4:+55334935 None:intergenic
TCTTGCAGCACTCTACCACG+TGG 0.776974 5_4:-55334950 Msa0858160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAGAAAATTTATAAA+TGG + chr5_4:55334989-55335008 None:intergenic 10.0%
!!! TATTCTTTTAATTTAACTTT+AGG + chr5_4:55335227-55335246 None:intergenic 10.0%
!! AATTGAAGAAAATTTATAAA+TGG + chr5_4:55334989-55335008 None:intergenic 10.0%
!!! TATTCTTTTAATTTAACTTT+AGG + chr5_4:55335227-55335246 None:intergenic 10.0%
!!! GGATTTCTTTTATAAATTAT+AGG - chr5_4:55335053-55335072 Msa0858160:intron 15.0%
!!! AAGAAATTGTAATTTTATAG+AGG - chr5_4:55335103-55335122 Msa0858160:intron 15.0%
!!! AATATAACTAATAATTTGTG+TGG - chr5_4:55335851-55335870 Msa0858160:intron 15.0%
!! GTAATGTTATTATGATTATT+AGG - chr5_4:55336375-55336394 Msa0858160:CDS 15.0%
!!! GGATTTCTTTTATAAATTAT+AGG - chr5_4:55335053-55335072 Msa0858160:intron 15.0%
!!! AAGAAATTGTAATTTTATAG+AGG - chr5_4:55335103-55335122 Msa0858160:intron 15.0%
!!! AATATAACTAATAATTTGTG+TGG - chr5_4:55335851-55335870 Msa0858160:intron 15.0%
!! GTAATGTTATTATGATTATT+AGG - chr5_4:55336375-55336394 Msa0858160:CDS 15.0%
!! AAACAGTGATATAAAGAAAA+AGG + chr5_4:55334831-55334850 None:intergenic 20.0%
!! AATTATAGGATCAAATTAGT+TGG - chr5_4:55335032-55335051 Msa0858160:intron 20.0%
!! AATTATAGGATCAAATTAGT+TGG - chr5_4:55335032-55335051 Msa0858160:intron 20.0%
!! TATATAGTAGTAGTTATTTG+TGG - chr5_4:55335192-55335211 Msa0858160:CDS 20.0%
!!! CTTATTTTATGAGTAGATTT+TGG - chr5_4:55335874-55335893 Msa0858160:intron 20.0%
!!! GAAATTTTGATTTGAAGAAA+AGG + chr5_4:55336322-55336341 None:intergenic 20.0%
!! AAACAGTGATATAAAGAAAA+AGG + chr5_4:55334831-55334850 None:intergenic 20.0%
!! AATTATAGGATCAAATTAGT+TGG - chr5_4:55335032-55335051 Msa0858160:intron 20.0%
!! AATTATAGGATCAAATTAGT+TGG - chr5_4:55335032-55335051 Msa0858160:intron 20.0%
!! TATATAGTAGTAGTTATTTG+TGG - chr5_4:55335192-55335211 Msa0858160:CDS 20.0%
!!! CTTATTTTATGAGTAGATTT+TGG - chr5_4:55335874-55335893 Msa0858160:intron 20.0%
!!! GAAATTTTGATTTGAAGAAA+AGG + chr5_4:55336322-55336341 None:intergenic 20.0%
! TTATGAATATGTCCTTATCA+TGG + chr5_4:55335293-55335312 None:intergenic 25.0%
!! CTGTCTTTTATTAGTCAATT+TGG - chr5_4:55335404-55335423 Msa0858160:CDS 25.0%
! ATTGAATATTATTCTTGCAG+TGG - chr5_4:55336128-55336147 Msa0858160:intron 25.0%
!!! CTTGAGTGTTATTTTAGATT+TGG + chr5_4:55336511-55336530 None:intergenic 25.0%
!! ATGAATCATGATAGTGTTAA+GGG + chr5_4:55336556-55336575 None:intergenic 25.0%
! TTATGAATATGTCCTTATCA+TGG + chr5_4:55335293-55335312 None:intergenic 25.0%
!! CTGTCTTTTATTAGTCAATT+TGG - chr5_4:55335404-55335423 Msa0858160:CDS 25.0%
! ATTGAATATTATTCTTGCAG+TGG - chr5_4:55336128-55336147 Msa0858160:intron 25.0%
!!! CTTGAGTGTTATTTTAGATT+TGG + chr5_4:55336511-55336530 None:intergenic 25.0%
!! ATGAATCATGATAGTGTTAA+GGG + chr5_4:55336556-55336575 None:intergenic 25.0%
AAAAATGGAAGCTAAAGAAC+AGG - chr5_4:55334630-55334649 Msa0858160:three_prime_UTR 30.0%
!!! TATCACTGTTTTGACTGTTA+TGG - chr5_4:55334840-55334859 Msa0858160:intron 30.0%
!!! ATCACTGTTTTGACTGTTAT+GGG - chr5_4:55334841-55334860 Msa0858160:intron 30.0%
ATATATACCAGATATTCCAG+CGG + chr5_4:55334959-55334978 None:intergenic 30.0%
AAGTAACAACTACCATGATA+AGG - chr5_4:55335278-55335297 Msa0858160:intron 30.0%
! GTATCGATCTAATGTTAGTT+TGG - chr5_4:55335372-55335391 Msa0858160:intron 30.0%
TAATACCAGTTCCAGTAATT+GGG + chr5_4:55335949-55335968 None:intergenic 30.0%
TTAATACCAGTTCCAGTAAT+TGG + chr5_4:55335950-55335969 None:intergenic 30.0%
TTTGATCACTTAGACTTGAA+GGG + chr5_4:55336226-55336245 None:intergenic 30.0%
ATTTGATCACTTAGACTTGA+AGG + chr5_4:55336227-55336246 None:intergenic 30.0%
GTCTAAGTGATCAAATCAAA+CGG - chr5_4:55336231-55336250 Msa0858160:CDS 30.0%
ATCAATCAAGACATGTTTGT+GGG - chr5_4:55336260-55336279 Msa0858160:CDS 30.0%
CTCAAAACCATAGGAAAATT+AGG + chr5_4:55336429-55336448 None:intergenic 30.0%
!!! ATTTTCCTATGGTTTTGAGT+TGG - chr5_4:55336430-55336449 Msa0858160:CDS 30.0%
TATTTCCAACTCAAAACCAT+AGG + chr5_4:55336438-55336457 None:intergenic 30.0%
!!! TGGTTTTGAGTTGGAAATAA+TGG - chr5_4:55336439-55336458 Msa0858160:CDS 30.0%
!!! GGTTTTGAGTTGGAAATAAT+GGG - chr5_4:55336440-55336459 Msa0858160:CDS 30.0%
!!! GTTTTGAGTTGGAAATAATG+GGG - chr5_4:55336441-55336460 Msa0858160:CDS 30.0%
! CATGAATCATGATAGTGTTA+AGG + chr5_4:55336557-55336576 None:intergenic 30.0%
AAAAATGGAAGCTAAAGAAC+AGG - chr5_4:55334630-55334649 Msa0858160:three_prime_UTR 30.0%
!!! TATCACTGTTTTGACTGTTA+TGG - chr5_4:55334840-55334859 Msa0858160:intron 30.0%
!!! ATCACTGTTTTGACTGTTAT+GGG - chr5_4:55334841-55334860 Msa0858160:intron 30.0%
ATATATACCAGATATTCCAG+CGG + chr5_4:55334959-55334978 None:intergenic 30.0%
AAGTAACAACTACCATGATA+AGG - chr5_4:55335278-55335297 Msa0858160:intron 30.0%
! GTATCGATCTAATGTTAGTT+TGG - chr5_4:55335372-55335391 Msa0858160:intron 30.0%
TAATACCAGTTCCAGTAATT+GGG + chr5_4:55335949-55335968 None:intergenic 30.0%
TTAATACCAGTTCCAGTAAT+TGG + chr5_4:55335950-55335969 None:intergenic 30.0%
TTTGATCACTTAGACTTGAA+GGG + chr5_4:55336226-55336245 None:intergenic 30.0%
ATTTGATCACTTAGACTTGA+AGG + chr5_4:55336227-55336246 None:intergenic 30.0%
GTCTAAGTGATCAAATCAAA+CGG - chr5_4:55336231-55336250 Msa0858160:CDS 30.0%
ATCAATCAAGACATGTTTGT+GGG - chr5_4:55336260-55336279 Msa0858160:CDS 30.0%
CTCAAAACCATAGGAAAATT+AGG + chr5_4:55336429-55336448 None:intergenic 30.0%
!!! ATTTTCCTATGGTTTTGAGT+TGG - chr5_4:55336430-55336449 Msa0858160:CDS 30.0%
TATTTCCAACTCAAAACCAT+AGG + chr5_4:55336438-55336457 None:intergenic 30.0%
!!! TGGTTTTGAGTTGGAAATAA+TGG - chr5_4:55336439-55336458 Msa0858160:CDS 30.0%
!!! GGTTTTGAGTTGGAAATAAT+GGG - chr5_4:55336440-55336459 Msa0858160:CDS 30.0%
!!! GTTTTGAGTTGGAAATAATG+GGG - chr5_4:55336441-55336460 Msa0858160:CDS 30.0%
! CATGAATCATGATAGTGTTA+AGG + chr5_4:55336557-55336576 None:intergenic 30.0%
!!! AGGTTTGTGTTTTTGGATTG+AGG + chr5_4:55334604-55334623 None:intergenic 35.0%
CAATCCAAAAACACAAACCT+AGG - chr5_4:55334604-55334623 Msa0858160:three_prime_UTR 35.0%
! TGTTCCTAGGTTTGTGTTTT+TGG + chr5_4:55334611-55334630 None:intergenic 35.0%
CACAAACCTAGGAACAAAAA+TGG - chr5_4:55334615-55334634 Msa0858160:three_prime_UTR 35.0%
!! TAGCTTCCATTTTTGTTCCT+AGG + chr5_4:55334624-55334643 None:intergenic 35.0%
AAAGAACAGGATGTGTCTTT+AGG - chr5_4:55334643-55334662 Msa0858160:three_prime_UTR 35.0%
TGATTCTAAGTGTAAGACTG+TGG - chr5_4:55334876-55334895 Msa0858160:three_prime_UTR 35.0%
GATTCTAAGTGTAAGACTGT+GGG - chr5_4:55334877-55334896 Msa0858160:three_prime_UTR 35.0%
AATTGAATACTGTGTGATGC+AGG - chr5_4:55335432-55335451 Msa0858160:CDS 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr5_4:55335473-55335492 Msa0858160:CDS 35.0%
! TACATGGTGATGCAATGTTT+GGG - chr5_4:55335528-55335547 Msa0858160:CDS 35.0%
TTTGAAGGAAAGACACGATT+TGG - chr5_4:55335582-55335601 Msa0858160:CDS 35.0%
TGACAGTGTAAAGAGACTTA+CGG + chr5_4:55335754-55335773 None:intergenic 35.0%
TGCTGCTATTATCTTCAACA+AGG - chr5_4:55335988-55336007 Msa0858160:intron 35.0%
ATTATCTTCAACAAGGACCT+TGG - chr5_4:55335995-55336014 Msa0858160:intron 35.0%
CAAACATGTCTTGATTGATC+AGG + chr5_4:55336259-55336278 None:intergenic 35.0%
GATCAATCAAGACATGTTTG+TGG - chr5_4:55336259-55336278 Msa0858160:CDS 35.0%
! GTAATGGCCTAATTTTCCTA+TGG - chr5_4:55336419-55336438 Msa0858160:CDS 35.0%
!!! AGGTTTGTGTTTTTGGATTG+AGG + chr5_4:55334604-55334623 None:intergenic 35.0%
CAATCCAAAAACACAAACCT+AGG - chr5_4:55334604-55334623 Msa0858160:three_prime_UTR 35.0%
! TGTTCCTAGGTTTGTGTTTT+TGG + chr5_4:55334611-55334630 None:intergenic 35.0%
CACAAACCTAGGAACAAAAA+TGG - chr5_4:55334615-55334634 Msa0858160:three_prime_UTR 35.0%
!! TAGCTTCCATTTTTGTTCCT+AGG + chr5_4:55334624-55334643 None:intergenic 35.0%
AAAGAACAGGATGTGTCTTT+AGG - chr5_4:55334643-55334662 Msa0858160:three_prime_UTR 35.0%
TGATTCTAAGTGTAAGACTG+TGG - chr5_4:55334876-55334895 Msa0858160:three_prime_UTR 35.0%
GATTCTAAGTGTAAGACTGT+GGG - chr5_4:55334877-55334896 Msa0858160:three_prime_UTR 35.0%
AATTGAATACTGTGTGATGC+AGG - chr5_4:55335432-55335451 Msa0858160:CDS 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr5_4:55335473-55335492 Msa0858160:CDS 35.0%
! TACATGGTGATGCAATGTTT+GGG - chr5_4:55335528-55335547 Msa0858160:CDS 35.0%
TTTGAAGGAAAGACACGATT+TGG - chr5_4:55335582-55335601 Msa0858160:CDS 35.0%
TGACAGTGTAAAGAGACTTA+CGG + chr5_4:55335754-55335773 None:intergenic 35.0%
TGCTGCTATTATCTTCAACA+AGG - chr5_4:55335988-55336007 Msa0858160:intron 35.0%
ATTATCTTCAACAAGGACCT+TGG - chr5_4:55335995-55336014 Msa0858160:intron 35.0%
CAAACATGTCTTGATTGATC+AGG + chr5_4:55336259-55336278 None:intergenic 35.0%
GATCAATCAAGACATGTTTG+TGG - chr5_4:55336259-55336278 Msa0858160:CDS 35.0%
! GTAATGGCCTAATTTTCCTA+TGG - chr5_4:55336419-55336438 Msa0858160:CDS 35.0%
GATAATCCTTAGGGTCATCT+TGG + chr5_4:55334717-55334736 None:intergenic 40.0%
! GTGGCTCTTGATAATCCTTA+GGG + chr5_4:55334726-55334745 None:intergenic 40.0%
AGTTCAGATGGCTCAAACAA+CGG + chr5_4:55334757-55334776 None:intergenic 40.0%
TGTAAGACTGTGGGAATTCA+AGG - chr5_4:55334886-55334905 Msa0858160:three_prime_UTR 40.0%
TGGGAATTCAAGGAATTGCT+TGG - chr5_4:55334896-55334915 Msa0858160:exon 40.0%
GGGAATTCAAGGAATTGCTT+GGG - chr5_4:55334897-55334916 Msa0858160:exon 40.0%
ATAAACCCAGCAGTGACATT+TGG - chr5_4:55335462-55335481 Msa0858160:CDS 40.0%
TAAACCCAGCAGTGACATTT+GGG - chr5_4:55335463-55335482 Msa0858160:CDS 40.0%
!! GACAAGAGCATTGTTCTACA+TGG - chr5_4:55335512-55335531 Msa0858160:CDS 40.0%
! CTACATGGTGATGCAATGTT+TGG - chr5_4:55335527-55335546 Msa0858160:CDS 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG - chr5_4:55335540-55335559 Msa0858160:CDS 40.0%
!! GGTGTTGTGAAAGGTTTTGA+AGG - chr5_4:55335567-55335586 Msa0858160:CDS 40.0%
! ACACGATTTGGAGATCTGAA+AGG - chr5_4:55335594-55335613 Msa0858160:CDS 40.0%
ACAGTGTAAAGAGACTTACG+GGG + chr5_4:55335752-55335771 None:intergenic 40.0%
GACAGTGTAAAGAGACTTAC+GGG + chr5_4:55335753-55335772 None:intergenic 40.0%
!! ATTTTGGCACCATTGCCAAT+TGG - chr5_4:55335890-55335909 Msa0858160:intron 40.0%
! TTTTGGCACCATTGCCAATT+GGG - chr5_4:55335891-55335910 Msa0858160:intron 40.0%
AGTTCCAGTAATTGGGATAG+TGG + chr5_4:55335942-55335961 None:intergenic 40.0%
ACTATCCCAATTACTGGAAC+TGG - chr5_4:55335941-55335960 Msa0858160:intron 40.0%
TATTCTTGCAGTGGATCTTC+TGG - chr5_4:55336137-55336156 Msa0858160:intron 40.0%
ATTCTTGCAGTGGATCTTCT+GGG - chr5_4:55336138-55336157 Msa0858160:intron 40.0%
TCACTTAGACTTGAAGGGAA+TGG + chr5_4:55336221-55336240 None:intergenic 40.0%
CATGTGTGTGTGTTGAGTAA+TGG - chr5_4:55336403-55336422 Msa0858160:CDS 40.0%
GATAATCCTTAGGGTCATCT+TGG + chr5_4:55334717-55334736 None:intergenic 40.0%
! GTGGCTCTTGATAATCCTTA+GGG + chr5_4:55334726-55334745 None:intergenic 40.0%
AGTTCAGATGGCTCAAACAA+CGG + chr5_4:55334757-55334776 None:intergenic 40.0%
TGTAAGACTGTGGGAATTCA+AGG - chr5_4:55334886-55334905 Msa0858160:three_prime_UTR 40.0%
TGGGAATTCAAGGAATTGCT+TGG - chr5_4:55334896-55334915 Msa0858160:exon 40.0%
GGGAATTCAAGGAATTGCTT+GGG - chr5_4:55334897-55334916 Msa0858160:exon 40.0%
ATAAACCCAGCAGTGACATT+TGG - chr5_4:55335462-55335481 Msa0858160:CDS 40.0%
TAAACCCAGCAGTGACATTT+GGG - chr5_4:55335463-55335482 Msa0858160:CDS 40.0%
!! GACAAGAGCATTGTTCTACA+TGG - chr5_4:55335512-55335531 Msa0858160:CDS 40.0%
! CTACATGGTGATGCAATGTT+TGG - chr5_4:55335527-55335546 Msa0858160:CDS 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG - chr5_4:55335540-55335559 Msa0858160:CDS 40.0%
!! GGTGTTGTGAAAGGTTTTGA+AGG - chr5_4:55335567-55335586 Msa0858160:CDS 40.0%
! ACACGATTTGGAGATCTGAA+AGG - chr5_4:55335594-55335613 Msa0858160:CDS 40.0%
ACAGTGTAAAGAGACTTACG+GGG + chr5_4:55335752-55335771 None:intergenic 40.0%
GACAGTGTAAAGAGACTTAC+GGG + chr5_4:55335753-55335772 None:intergenic 40.0%
!! ATTTTGGCACCATTGCCAAT+TGG - chr5_4:55335890-55335909 Msa0858160:intron 40.0%
! TTTTGGCACCATTGCCAATT+GGG - chr5_4:55335891-55335910 Msa0858160:intron 40.0%
AGTTCCAGTAATTGGGATAG+TGG + chr5_4:55335942-55335961 None:intergenic 40.0%
ACTATCCCAATTACTGGAAC+TGG - chr5_4:55335941-55335960 Msa0858160:intron 40.0%
TATTCTTGCAGTGGATCTTC+TGG - chr5_4:55336137-55336156 Msa0858160:intron 40.0%
ATTCTTGCAGTGGATCTTCT+GGG - chr5_4:55336138-55336157 Msa0858160:intron 40.0%
TCACTTAGACTTGAAGGGAA+TGG + chr5_4:55336221-55336240 None:intergenic 40.0%
CATGTGTGTGTGTTGAGTAA+TGG - chr5_4:55336403-55336422 Msa0858160:CDS 40.0%
TTCCCAGAAAGACAACCACT+TGG - chr5_4:55334676-55334695 Msa0858160:three_prime_UTR 45.0%
TCCCAGAAAGACAACCACTT+GGG - chr5_4:55334677-55334696 Msa0858160:three_prime_UTR 45.0%
TCCCAAGTGGTTGTCTTTCT+GGG + chr5_4:55334681-55334700 None:intergenic 45.0%
ATCCCAAGTGGTTGTCTTTC+TGG + chr5_4:55334682-55334701 None:intergenic 45.0%
TCAAAGCCAAGATGACCCTA+AGG - chr5_4:55334708-55334727 Msa0858160:three_prime_UTR 45.0%
! GGTGGCTCTTGATAATCCTT+AGG + chr5_4:55334727-55334746 None:intergenic 45.0%
! AGCCATCTGAACTGACTTCA+TGG - chr5_4:55334764-55334783 Msa0858160:three_prime_UTR 45.0%
GACCATGAAGTCAGTTCAGA+TGG + chr5_4:55334769-55334788 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG - chr5_4:55334781-55334800 Msa0858160:three_prime_UTR 45.0%
CATGGTCTTTCTACAGAGCT+GGG - chr5_4:55334782-55334801 Msa0858160:three_prime_UTR 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5_4:55334904-55334923 Msa0858160:exon 45.0%
TGAATACTGTGTGATGCAGG+TGG - chr5_4:55335435-55335454 Msa0858160:CDS 45.0%
ATAGCCCAAATGTCACTGCT+GGG + chr5_4:55335470-55335489 None:intergenic 45.0%
AATAGCCCAAATGTCACTGC+TGG + chr5_4:55335471-55335490 None:intergenic 45.0%
!!! CATTTGGGCTATTTTTGGCG+AGG - chr5_4:55335478-55335497 Msa0858160:CDS 45.0%
! CGATTTGGAGATCTGAAAGG+TGG - chr5_4:55335597-55335616 Msa0858160:CDS 45.0%
GTAACCAGGAGCAACAAAGT+TGG + chr5_4:55335625-55335644 None:intergenic 45.0%
!! GGTCTTGGTGCTGAAATTGT+TGG - chr5_4:55335657-55335676 Msa0858160:CDS 45.0%
TCTAGCGCTACGTTTAGCAT+CGG + chr5_4:55335718-55335737 None:intergenic 45.0%
AAGAACACAGCGAACCCAAT+TGG + chr5_4:55335908-55335927 None:intergenic 45.0%
AATTGGGTTCGCTGTGTTCT+TGG - chr5_4:55335907-55335926 Msa0858160:intron 45.0%
TTGGCCACTATCCCAATTAC+TGG - chr5_4:55335935-55335954 Msa0858160:intron 45.0%
ATTAACCCTGCTCGTAGTCT+TGG - chr5_4:55335965-55335984 Msa0858160:intron 45.0%
TCTTCAACAAGGACCTTGGT+TGG - chr5_4:55335999-55336018 Msa0858160:intron 45.0%
CTTCAACAAGGACCTTGGTT+GGG - chr5_4:55336000-55336019 Msa0858160:intron 45.0%
TTACGTGATCATCCCAACCA+AGG + chr5_4:55336015-55336034 None:intergenic 45.0%
TTCTGGGTGGGACCATTTAT+TGG - chr5_4:55336154-55336173 Msa0858160:intron 45.0%
GCAAGAGCTGCTCCAATAAA+TGG + chr5_4:55336169-55336188 None:intergenic 45.0%
TTACATCATCACACACGAGC+TGG + chr5_4:55336468-55336487 None:intergenic 45.0%
! AGCTCGTGTGTGATGATGTA+AGG - chr5_4:55336467-55336486 Msa0858160:CDS 45.0%
! GCTCGTGTGTGATGATGTAA+GGG - chr5_4:55336468-55336487 Msa0858160:CDS 45.0%
! GTGATGATGTAAGGGTGTGA+TGG - chr5_4:55336476-55336495 Msa0858160:CDS 45.0%
TTCCCAGAAAGACAACCACT+TGG - chr5_4:55334676-55334695 Msa0858160:three_prime_UTR 45.0%
TCCCAGAAAGACAACCACTT+GGG - chr5_4:55334677-55334696 Msa0858160:three_prime_UTR 45.0%
TCCCAAGTGGTTGTCTTTCT+GGG + chr5_4:55334681-55334700 None:intergenic 45.0%
ATCCCAAGTGGTTGTCTTTC+TGG + chr5_4:55334682-55334701 None:intergenic 45.0%
TCAAAGCCAAGATGACCCTA+AGG - chr5_4:55334708-55334727 Msa0858160:three_prime_UTR 45.0%
! GGTGGCTCTTGATAATCCTT+AGG + chr5_4:55334727-55334746 None:intergenic 45.0%
! AGCCATCTGAACTGACTTCA+TGG - chr5_4:55334764-55334783 Msa0858160:three_prime_UTR 45.0%
GACCATGAAGTCAGTTCAGA+TGG + chr5_4:55334769-55334788 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG - chr5_4:55334781-55334800 Msa0858160:three_prime_UTR 45.0%
CATGGTCTTTCTACAGAGCT+GGG - chr5_4:55334782-55334801 Msa0858160:three_prime_UTR 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5_4:55334904-55334923 Msa0858160:exon 45.0%
TGAATACTGTGTGATGCAGG+TGG - chr5_4:55335435-55335454 Msa0858160:CDS 45.0%
ATAGCCCAAATGTCACTGCT+GGG + chr5_4:55335470-55335489 None:intergenic 45.0%
AATAGCCCAAATGTCACTGC+TGG + chr5_4:55335471-55335490 None:intergenic 45.0%
!!! CATTTGGGCTATTTTTGGCG+AGG - chr5_4:55335478-55335497 Msa0858160:CDS 45.0%
! CGATTTGGAGATCTGAAAGG+TGG - chr5_4:55335597-55335616 Msa0858160:CDS 45.0%
GTAACCAGGAGCAACAAAGT+TGG + chr5_4:55335625-55335644 None:intergenic 45.0%
!! GGTCTTGGTGCTGAAATTGT+TGG - chr5_4:55335657-55335676 Msa0858160:CDS 45.0%
TCTAGCGCTACGTTTAGCAT+CGG + chr5_4:55335718-55335737 None:intergenic 45.0%
AAGAACACAGCGAACCCAAT+TGG + chr5_4:55335908-55335927 None:intergenic 45.0%
AATTGGGTTCGCTGTGTTCT+TGG - chr5_4:55335907-55335926 Msa0858160:intron 45.0%
TTGGCCACTATCCCAATTAC+TGG - chr5_4:55335935-55335954 Msa0858160:intron 45.0%
ATTAACCCTGCTCGTAGTCT+TGG - chr5_4:55335965-55335984 Msa0858160:intron 45.0%
TCTTCAACAAGGACCTTGGT+TGG - chr5_4:55335999-55336018 Msa0858160:intron 45.0%
CTTCAACAAGGACCTTGGTT+GGG - chr5_4:55336000-55336019 Msa0858160:intron 45.0%
TTACGTGATCATCCCAACCA+AGG + chr5_4:55336015-55336034 None:intergenic 45.0%
TTCTGGGTGGGACCATTTAT+TGG - chr5_4:55336154-55336173 Msa0858160:intron 45.0%
GCAAGAGCTGCTCCAATAAA+TGG + chr5_4:55336169-55336188 None:intergenic 45.0%
TTACATCATCACACACGAGC+TGG + chr5_4:55336468-55336487 None:intergenic 45.0%
! AGCTCGTGTGTGATGATGTA+AGG - chr5_4:55336467-55336486 Msa0858160:CDS 45.0%
! GCTCGTGTGTGATGATGTAA+GGG - chr5_4:55336468-55336487 Msa0858160:CDS 45.0%
! GTGATGATGTAAGGGTGTGA+TGG - chr5_4:55336476-55336495 Msa0858160:CDS 45.0%
!!! ATTTTTCTTTTATAAATTAT+AGG - chr5_4:55335018-55335037 Msa0858160:intron 5.0%
!!! ATTTTTCTTTTATAAATTAT+AGG - chr5_4:55335018-55335037 Msa0858160:intron 5.0%
CTTTGAGCTGCAATCCCAAG+TGG + chr5_4:55334694-55334713 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5_4:55334907-55334926 Msa0858160:exon 50.0%
TACTGCACCGCTGGAATATC+TGG - chr5_4:55334949-55334968 Msa0858160:CDS 50.0%
!! TTGGGTGCTATTTGTGGTGC+TGG - chr5_4:55335546-55335565 Msa0858160:CDS 50.0%
!! TGTGGTGCTGGTGTTGTGAA+AGG - chr5_4:55335558-55335577 Msa0858160:CDS 50.0%
GTTGCTCCTGGTTACACCAA+AGG - chr5_4:55335630-55335649 Msa0858160:CDS 50.0%
CCTGGTTACACCAAAGGTGA+CGG - chr5_4:55335636-55335655 Msa0858160:CDS 50.0%
! TACACCAAAGGTGACGGTCT+TGG - chr5_4:55335642-55335661 Msa0858160:CDS 50.0%
ACAGCGAACCCAATTGGCAA+TGG + chr5_4:55335902-55335921 None:intergenic 50.0%
CGCTGTGTTCTTGGTTCACT+TGG - chr5_4:55335916-55335935 Msa0858160:intron 50.0%
TTGCAGTGGATCTTCTGGGT+GGG - chr5_4:55336142-55336161 Msa0858160:intron 50.0%
CTTTGAGCTGCAATCCCAAG+TGG + chr5_4:55334694-55334713 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5_4:55334907-55334926 Msa0858160:exon 50.0%
TACTGCACCGCTGGAATATC+TGG - chr5_4:55334949-55334968 Msa0858160:CDS 50.0%
!! TTGGGTGCTATTTGTGGTGC+TGG - chr5_4:55335546-55335565 Msa0858160:CDS 50.0%
!! TGTGGTGCTGGTGTTGTGAA+AGG - chr5_4:55335558-55335577 Msa0858160:CDS 50.0%
GTTGCTCCTGGTTACACCAA+AGG - chr5_4:55335630-55335649 Msa0858160:CDS 50.0%
CCTGGTTACACCAAAGGTGA+CGG - chr5_4:55335636-55335655 Msa0858160:CDS 50.0%
! TACACCAAAGGTGACGGTCT+TGG - chr5_4:55335642-55335661 Msa0858160:CDS 50.0%
ACAGCGAACCCAATTGGCAA+TGG + chr5_4:55335902-55335921 None:intergenic 50.0%
CGCTGTGTTCTTGGTTCACT+TGG - chr5_4:55335916-55335935 Msa0858160:intron 50.0%
TTGCAGTGGATCTTCTGGGT+GGG - chr5_4:55336142-55336161 Msa0858160:intron 50.0%
!! TCAAACAACGGTGCTGGTGG+TGG + chr5_4:55334745-55334764 None:intergenic 55.0%
GATGGCTCAAACAACGGTGC+TGG + chr5_4:55334751-55334770 None:intergenic 55.0%
! GCTCTTGTTTACTGCACCGC+TGG - chr5_4:55334940-55334959 Msa0858160:CDS 55.0%
GGTGCCAACTTTGTTGCTCC+TGG - chr5_4:55335618-55335637 Msa0858160:CDS 55.0%
! CCGTCACCTTTGGTGTAACC+AGG + chr5_4:55335639-55335658 None:intergenic 55.0%
AGCACCAAGACCGTCACCTT+TGG + chr5_4:55335649-55335668 None:intergenic 55.0%
!! AGCATCGGTGGCTGAGAAGA+CGG + chr5_4:55335703-55335722 None:intergenic 55.0%
! AGCGCTACGTTTAGCATCGG+TGG + chr5_4:55335715-55335734 None:intergenic 55.0%
CAGCACCAAGACTACGAGCA+GGG + chr5_4:55335973-55335992 None:intergenic 55.0%
CTTGCAGTGGATCTTCTGGG+TGG - chr5_4:55336141-55336160 Msa0858160:intron 55.0%
TCTTGCAGCACTCTACCACG+TGG - chr5_4:55336183-55336202 Msa0858160:intron 55.0%
!! TGGCTCTGATTACGACCACG+TGG + chr5_4:55336201-55336220 None:intergenic 55.0%
!! TCAAACAACGGTGCTGGTGG+TGG + chr5_4:55334745-55334764 None:intergenic 55.0%
GATGGCTCAAACAACGGTGC+TGG + chr5_4:55334751-55334770 None:intergenic 55.0%
! GCTCTTGTTTACTGCACCGC+TGG - chr5_4:55334940-55334959 Msa0858160:CDS 55.0%
GGTGCCAACTTTGTTGCTCC+TGG - chr5_4:55335618-55335637 Msa0858160:CDS 55.0%
! CCGTCACCTTTGGTGTAACC+AGG + chr5_4:55335639-55335658 None:intergenic 55.0%
AGCACCAAGACCGTCACCTT+TGG + chr5_4:55335649-55335668 None:intergenic 55.0%
!! AGCATCGGTGGCTGAGAAGA+CGG + chr5_4:55335703-55335722 None:intergenic 55.0%
! AGCGCTACGTTTAGCATCGG+TGG + chr5_4:55335715-55335734 None:intergenic 55.0%
CAGCACCAAGACTACGAGCA+GGG + chr5_4:55335973-55335992 None:intergenic 55.0%
CTTGCAGTGGATCTTCTGGG+TGG - chr5_4:55336141-55336160 Msa0858160:intron 55.0%
TCTTGCAGCACTCTACCACG+TGG - chr5_4:55336183-55336202 Msa0858160:intron 55.0%
!! TGGCTCTGATTACGACCACG+TGG + chr5_4:55336201-55336220 None:intergenic 55.0%
! GGCTCAAACAACGGTGCTGG+TGG + chr5_4:55334748-55334767 None:intergenic 60.0%
GCAGCACCAAGACTACGAGC+AGG + chr5_4:55335974-55335993 None:intergenic 60.0%
! GGCTCAAACAACGGTGCTGG+TGG + chr5_4:55334748-55334767 None:intergenic 60.0%
GCAGCACCAAGACTACGAGC+AGG + chr5_4:55335974-55335993 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 55334574 55336581 55334574 ID=Msa0858160;Name=Msa0858160
chr5_4 mRNA 55334574 55336581 55334574 ID=Msa0858160-mRNA-1;Parent=Msa0858160;Name=Msa0858160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=60|1|1|1|0.75|0.6|5|320|289
chr5_4 exon 55334574 55334822 55334574 ID=Msa0858160-mRNA-1:exon:16987;Parent=Msa0858160-mRNA-1
chr5_4 exon 55334844 55335007 55334844 ID=Msa0858160-mRNA-1:exon:16986;Parent=Msa0858160-mRNA-1
chr5_4 exon 55335125 55335265 55335125 ID=Msa0858160-mRNA-1:exon:16985;Parent=Msa0858160-mRNA-1
chr5_4 exon 55335403 55335701 55335403 ID=Msa0858160-mRNA-1:exon:16984;Parent=Msa0858160-mRNA-1
chr5_4 exon 55336185 55336581 55336185 ID=Msa0858160-mRNA-1:exon:16983;Parent=Msa0858160-mRNA-1
chr5_4 five_prime_UTR 55336522 55336581 55336522 ID=Msa0858160-mRNA-1:five_prime_utr;Parent=Msa0858160-mRNA-1
chr5_4 CDS 55336185 55336521 55336185 ID=Msa0858160-mRNA-1:cds;Parent=Msa0858160-mRNA-1
chr5_4 CDS 55335403 55335701 55335403 ID=Msa0858160-mRNA-1:cds;Parent=Msa0858160-mRNA-1
chr5_4 CDS 55335125 55335265 55335125 ID=Msa0858160-mRNA-1:cds;Parent=Msa0858160-mRNA-1
chr5_4 CDS 55334915 55335007 55334915 ID=Msa0858160-mRNA-1:cds;Parent=Msa0858160-mRNA-1
chr5_4 three_prime_UTR 55334844 55334914 55334844 ID=Msa0858160-mRNA-1:three_prime_utr;Parent=Msa0858160-mRNA-1
chr5_4 three_prime_UTR 55334574 55334822 55334574 ID=Msa0858160-mRNA-1:three_prime_utr;Parent=Msa0858160-mRNA-1
Gene Sequence

>Msa0858160

ATGGAAGCTAAAGAACAGGATGTGTCTTTAGGAGCAAACAAATTCCCAGAAAGACAACCACTTGGGATTGCAGCTCAAAGCCAAGATGACCCTAAGGATTATCAAGAGCCACCACCAGCACCGTTGTTTGAGCCATCTGAACTGACTTCATGGTCTTTCTACAGAGCTGGGATAGCTGAGTTCGTTGCTACTTTCCTTTTTCTTTATATCACTGTTTTGACTGTTATGGGTGTTGTTAGAGCTGATTCTAAGTGTAAGACTGTGGGAATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGCACCGCTGGAATATCTGGTGGTCACATAAACCCAGCAGTGACATTTGGGCTATTTTTGGCGAGGAAATTGTCGTTGACAAGAGCATTGTTCTACATGGTGATGCAATGTTTGGGTGCTATTTGTGGTGCTGGTGTTGTGAAAGGTTTTGAAGGAAAGACACGATTTGGAGATCTGAAAGGTGGTGCCAACTTTGTTGCTCCTGGTTACACCAAAGGTGACGGTCTTGGTGCTGAAATTGTTGGCACTTTCATTCTTGTTTACACCGTCTTCTCAGCCACCGATGCTAAACGTAGCGCTAGAGACTCTCATGTCCCCATTTTGGCACCATTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACTATCCCAATTACTGGAACTGGTATTAACCCTGCTCGTAGTCTTGGTGCTGCTATTATCTTCAACAAGGACCTTGGTTGGGATGATCACTGGATCTTCTGGGTGGGACCATTTATTGGAGCAGCTCTTGCAGCACTCTACCACGTGGTCGTAATCAGAGCCATTCCCTTCAAGTCTAAGTGA
Protein sequence

>Msa0858160

MEAKEQDVSLGANKFPERQPLGIAAQSQDDPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITVLTVMGVVRADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFEGKTRFGDLKGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHVVVIRAIPFKSK*