AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817690 MtrunA17_Chr5g0436701 92.734 289 1 1 1 269 1 289 0.0 530
Msa0817690 MtrunA17_Chr3g0113211 85.813 289 21 1 1 269 1 289 1.73e-179 495
Msa0817690 MtrunA17_Chr8g0386961 80.070 286 35 2 4 269 3 286 2.19e-165 459
Msa0817690 MtrunA17_Chr5g0397391 78.322 286 40 2 4 269 3 286 5.46e-160 446
Msa0817690 MtrunA17_Chr4g0006001 74.138 290 53 3 1 269 1 289 2.52e-153 429
Msa0817690 MtrunA17_Chr7g0264111 65.891 258 61 3 32 263 16 272 3.85e-116 335
Msa0817690 MtrunA17_Chr1g0199731 64.419 267 68 4 23 263 7 272 8.97e-115 331
Msa0817690 MtrunA17_Chr2g0326621 61.742 264 73 3 32 268 17 279 6.93e-114 329
Msa0817690 MtrunA17_Chr3g0145671 64.202 257 71 2 32 268 14 269 1.94e-112 325
Msa0817690 MtrunA17_Chr4g0029071 61.397 272 78 4 23 268 7 277 2.73e-111 322
Msa0817690 MtrunA17_Chr6g0478191 36.797 231 118 5 55 265 21 243 4.67e-27 105
Msa0817690 MtrunA17_Chr1g0188771 35.088 228 117 6 55 261 21 238 7.96e-27 105
Msa0817690 MtrunA17_Chr2g0331261 33.913 230 125 4 50 260 15 236 3.69e-26 102
Msa0817690 MtrunA17_Chr8g0340161 34.498 229 121 5 50 257 12 232 2.61e-25 100
Msa0817690 MtrunA17_Chr5g0399341 33.333 222 120 4 55 257 19 231 3.64e-22 92.4
Msa0817690 MtrunA17_Chr4g0030861 30.901 233 134 4 44 257 10 234 1.37e-21 90.9
Msa0817690 MtrunA17_Chr1g0146161 33.186 226 120 6 47 253 11 224 1.49e-21 90.5
Msa0817690 MtrunA17_Chr7g0264961 29.876 241 136 6 45 263 11 240 1.27e-20 88.2
Msa0817690 MtrunA17_Chr1g0146171 34.211 228 107 9 55 257 19 228 1.66e-20 87.8
Msa0817690 MtrunA17_Chr1g0212671 30.126 239 128 6 44 257 10 234 5.07e-20 86.7
Msa0817690 MtrunA17_Chr5g0435051 27.237 257 146 6 25 255 2 243 7.08e-18 80.9
Msa0817690 MtrunA17_Chr2g0284631 29.858 211 116 5 58 250 94 290 1.60e-17 80.9
Msa0817690 MtrunA17_Chr7g0222791 30.702 228 119 6 55 257 21 234 1.72e-17 79.7
Msa0817690 MtrunA17_Chr2g0284591 32.701 211 110 6 58 250 39 235 1.49e-16 77.4
Msa0817690 MtrunA17_Chr8g0379901 29.915 234 131 8 53 267 37 256 3.35e-16 76.6
Msa0817690 MtrunA17_Chr2g0284611 31.944 216 115 6 53 250 36 237 5.43e-15 73.2
Msa0817690 MtrunA17_Chr8g0379911 28.634 227 129 8 52 259 35 247 7.42e-15 72.8
Msa0817690 MtrunA17_Chr7g0217331 26.667 225 134 6 53 260 35 245 1.35e-14 72.0
Msa0817690 MtrunA17_Chr5g0426131 29.018 224 132 7 50 257 32 244 1.50e-14 71.6
Msa0817690 MtrunA17_Chr2g0284581 31.280 211 113 7 58 250 41 237 1.99e-14 71.6
Msa0817690 MtrunA17_Chr4g0044201 26.638 229 124 7 58 267 38 241 3.77e-14 70.5
Msa0817690 MtrunA17_Chr4g0038611 29.050 179 96 4 102 250 32 209 4.83e-14 70.1
Msa0817690 MtrunA17_Chr2g0284601 31.937 191 100 6 78 250 11 189 3.23e-13 67.4
Msa0817690 MtrunA17_Chr4g0001221 26.638 229 130 7 37 250 68 273 4.94e-13 67.8
Msa0817690 MtrunA17_Chr3g0079421 26.606 218 131 4 58 257 25 231 2.58e-12 65.5
Msa0817690 MtrunA17_Chr2g0333771 28.910 211 115 7 59 250 84 278 6.46e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817690 AT4G00430.1 78.893 289 38 3 1 269 1 286 5.14e-161 448
Msa0817690 AT2G45960.1 77.163 289 42 3 1 269 1 285 4.62e-158 441
Msa0817690 AT3G61430.2 77.509 289 41 3 1 269 1 285 2.23e-148 416
Msa0817690 AT3G61430.1 77.509 289 41 3 1 269 1 285 2.23e-148 416
Msa0817690 AT4G23400.1 77.855 289 41 3 1 269 1 286 6.90e-148 415
Msa0817690 AT1G01620.1 77.163 289 42 3 1 269 1 285 5.11e-147 413
Msa0817690 AT2G45960.2 75.676 259 39 3 1 239 1 255 5.36e-136 385
Msa0817690 AT2G45960.3 75.676 259 39 3 1 239 1 255 1.33e-134 382
Msa0817690 AT2G37180.1 65.019 263 65 4 32 268 14 275 1.89e-114 330
Msa0817690 AT2G37170.2 65.019 263 65 4 32 268 57 318 1.22e-113 330
Msa0817690 AT2G37170.1 65.019 263 65 4 32 268 14 275 2.66e-113 328
Msa0817690 AT4G35100.1 64.981 257 69 2 32 268 15 270 4.94e-113 327
Msa0817690 AT4G35100.2 64.981 257 69 2 32 268 15 270 4.94e-113 327
Msa0817690 AT3G53420.1 65.283 265 61 5 32 268 16 277 6.55e-113 327
Msa0817690 AT3G53420.2 65.283 265 61 5 32 268 16 277 6.55e-113 327
Msa0817690 AT2G16850.1 64.202 257 71 2 32 268 13 268 1.03e-110 321
Msa0817690 AT4G00430.2 81.347 193 33 2 1 193 1 190 3.16e-110 317
Msa0817690 AT3G54820.1 62.264 265 69 4 32 268 15 276 8.03e-110 319
Msa0817690 AT1G01620.2 77.103 214 28 2 76 269 1 213 1.27e-109 315
Msa0817690 AT5G60660.1 61.509 265 71 5 32 268 16 277 7.13e-107 311
Msa0817690 AT2G39010.1 60.456 263 77 3 32 268 15 276 2.45e-106 310
Msa0817690 AT2G39010.2 62.500 168 56 2 32 193 15 181 5.13e-67 207
Msa0817690 AT3G16240.1 34.361 227 122 4 50 257 14 232 5.83e-26 102
Msa0817690 AT5G47450.1 35.242 227 120 6 50 257 14 232 4.82e-25 100
Msa0817690 AT1G73190.1 34.286 245 128 6 46 265 15 251 9.29e-25 100
Msa0817690 AT4G01470.1 33.047 233 129 4 44 257 10 234 2.15e-24 98.6
Msa0817690 AT1G17810.1 31.967 244 133 6 46 264 15 250 9.13e-24 97.4
Msa0817690 AT4G17340.1 33.784 222 120 5 55 257 19 232 2.02e-21 90.9
Msa0817690 AT2G36830.1 30.041 243 127 7 44 259 10 236 3.69e-21 90.1
Msa0817690 AT3G26520.1 29.832 238 128 6 42 257 15 235 2.68e-20 87.8
Msa0817690 AT2G25810.1 34.071 226 119 6 55 261 19 233 3.84e-19 84.3
Msa0817690 AT1G31885.1 28.926 242 141 6 26 250 22 249 1.41e-17 81.3
Msa0817690 AT4G19030.1 28.137 263 161 7 26 268 26 280 1.67e-17 80.9
Msa0817690 AT3G47440.1 28.755 233 135 6 50 261 18 240 6.74e-16 75.9
Msa0817690 AT4G18910.1 27.652 264 161 8 26 267 21 276 4.05e-14 71.2
Msa0817690 AT5G37820.2 28.436 211 117 6 58 249 82 277 4.93e-14 71.2
Msa0817690 AT5G37820.1 28.436 211 117 6 58 249 46 241 5.88e-14 70.5
Msa0817690 AT1G31885.2 28.796 191 116 4 77 250 8 195 1.42e-13 69.3
Msa0817690 AT3G06100.1 26.923 234 133 8 55 269 46 260 4.26e-11 62.4

Find 94 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCAAGTGGTTGTCTTTC+TGG 0.098743 5_3:+53053274 None:intergenic
CAAGGAATTGCTTGGGCTTT+TGG 0.147648 5_3:-53053049 Msa0817690:CDS
TATTCTTGTAGTGGATCTTC+TGG 0.194999 5_3:-53051560 Msa0817690:intron
TTCTGGGTGGGACCATTTAT+TGG 0.238352 5_3:-53051543 Msa0817690:CDS
TTTGAAGGAAAGACAAGATT+TGG 0.252728 5_3:-53052173 Msa0817690:CDS
CGCTGTGTTCTTGGTTCACT+TGG 0.261822 5_3:-53051783 Msa0817690:CDS
GCAAGAGCTGCTCCAATAAA+TGG 0.306781 5_3:+53051531 None:intergenic
AATTGGGTTCGCTGTGTTCT+TGG 0.323972 5_3:-53051792 Msa0817690:CDS
AAACAGTGATATAAAGAAAA+AGG 0.328096 5_3:+53053125 None:intergenic
GTAATGTTATTATGATTATT+AGG 0.332200 5_3:-53051331 Msa0817690:three_prime_UTR
GGTGGCTCTTGATAGTCCTT+AGG 0.343217 5_3:+53053229 None:intergenic
TCCCAAGTGGTTGTCTTTCT+GGG 0.348961 5_3:+53053275 None:intergenic
CTACATGGTGATGCAATGTT+TGG 0.359716 5_3:-53052228 Msa0817690:CDS
CTAGAGTATACGCCAAGTTT+TGG 0.360947 5_3:-53051098 Msa0817690:three_prime_UTR
AGCCATCTGAACTGACTTCA+TGG 0.369669 5_3:-53053189 Msa0817690:CDS
TTAATACCAGTTCCAGTAAT+CGG 0.380209 5_3:+53051752 None:intergenic
GATAGTCCTTAGGGTCATCT+TGG 0.381110 5_3:+53053239 None:intergenic
CTCAAAACCATAGGAAAATT+AGG 0.381671 5_3:+53051276 None:intergenic
TAAATCCAGCAGTGACATTT+GGG 0.385302 5_3:-53052292 Msa0817690:CDS
TTGGCCACTATCCCGATTAC+TGG 0.387314 5_3:-53051764 Msa0817690:CDS
ATAAATCCAGCAGTGACATT+TGG 0.387473 5_3:-53052293 Msa0817690:CDS
TACTGTACTGCTGGAATCTC+AGG 0.389203 5_3:-53053004 Msa0817690:intron
TTGGGTGCTATTTGTGGTGC+TGG 0.389900 5_3:-53052209 Msa0817690:CDS
ATTCTTGTAGTGGATCTTCT+GGG 0.392837 5_3:-53051559 Msa0817690:intron
GCTCTTGTTTACTGTACTGC+TGG 0.392947 5_3:-53053013 Msa0817690:CDS
ATTTGATCACTTTGACTTGA+AGG 0.406054 5_3:+53051473 None:intergenic
CAATGTTTGGGTGCTATTTG+TGG 0.409953 5_3:-53052215 Msa0817690:CDS
GGGGATTCAAGGAATTGCTT+GGG 0.411864 5_3:-53053056 Msa0817690:CDS
TGTAAGACTGTGGGGATTCA+AGG 0.414562 5_3:-53053067 Msa0817690:CDS
GGTGCCAACTTTGTTGCTCC+TGG 0.427799 5_3:-53052137 Msa0817690:CDS
CAAAACTTGGCGTATACTCT+AGG 0.435702 5_3:+53051099 None:intergenic
TCATGGTCTTTCTACAGAGC+TGG 0.438821 5_3:-53053172 Msa0817690:CDS
CATGAATCATGATAGCGTTA+AGG 0.440040 5_3:+53051148 None:intergenic
AGCACCAAGACCGTCACCTT+TGG 0.443507 5_3:+53052109 None:intergenic
ATGAATCATGATAGCGTTAA+GGG 0.444049 5_3:+53051149 None:intergenic
TGGGGATTCAAGGAATTGCT+TGG 0.444258 5_3:-53053057 Msa0817690:CDS
ATCATTCAAGACATGTTTGT+GGG 0.448831 5_3:-53051437 Msa0817690:three_prime_UTR
GTGGCTCTTGATAGTCCTTA+GGG 0.463360 5_3:+53053230 None:intergenic
TACATGGTGATGCAATGTTT+GGG 0.464448 5_3:-53052227 Msa0817690:CDS
ACTATCCCGATTACTGGAAC+TGG 0.472051 5_3:-53051758 Msa0817690:CDS
TAATACCAGTTCCAGTAATC+GGG 0.475446 5_3:+53051753 None:intergenic
AGCTCGTGTGTGATGATGTA+CGG 0.475754 5_3:-53051235 Msa0817690:three_prime_UTR
ATTAACCCTGCTCGTAGTCT+TGG 0.478309 5_3:-53051734 Msa0817690:CDS
TGTGGTGCTGGTGTTGTGAA+AGG 0.479519 5_3:-53052197 Msa0817690:CDS
TCAAACAACGGTGCTGGTGG+TGG 0.481920 5_3:+53053211 None:intergenic
AATAGCCCAAATGTCACTGC+TGG 0.486149 5_3:+53052287 None:intergenic
TCTTCAACAAGGACCTTGGT+TGG 0.486748 5_3:-53051700 Msa0817690:CDS
AAGAACACAGCGAACCCAAT+TGG 0.494251 5_3:+53051794 None:intergenic
ACAAGATTTGGAGATTTGAA+AGG 0.499860 5_3:-53052161 Msa0817690:CDS
GATGGCTCAAACAACGGTGC+TGG 0.510215 5_3:+53053205 None:intergenic
TCACTTTGACTTGAAGGGAA+TGG 0.512515 5_3:+53051479 None:intergenic
GTCAAAGTGATCAAATCAAA+CGG 0.513030 5_3:-53051466 Msa0817690:exon
TTTGATCACTTTGACTTGAA+GGG 0.520518 5_3:+53051474 None:intergenic
AGTTCAGATGGCTCAAACAA+CGG 0.521397 5_3:+53053199 None:intergenic
ATTATCTTCAACAAGGACCT+TGG 0.525491 5_3:-53051704 Msa0817690:CDS
GACCATGAAGTCAGTTCAGA+TGG 0.532853 5_3:+53053187 None:intergenic
CATGGTCTTTCTACAGAGCT+GGG 0.538255 5_3:-53053171 Msa0817690:CDS
GTTGCTCCTGGTTACACCAA+AGG 0.542015 5_3:-53052125 Msa0817690:CDS
AGTTCCAGTAATCGGGATAG+TGG 0.546270 5_3:+53051760 None:intergenic
AAAGAACAGGATGTGTCTCT+AGG 0.546655 5_3:-53053310 Msa0817690:CDS
GATCATTCAAGACATGTTTG+TGG 0.547441 5_3:-53051438 Msa0817690:three_prime_UTR
GGTCTTGGTGCTGAAATTGT+TGG 0.547516 5_3:-53052098 Msa0817690:CDS
TATTTCCAACTCAAAACCAT+AGG 0.553587 5_3:+53051267 None:intergenic
TACACCAAAGGTGACGGTCT+TGG 0.554395 5_3:-53052113 Msa0817690:CDS
GATTCTAAGTGTAAGACTGT+GGG 0.554986 5_3:-53053076 Msa0817690:CDS
CATGTGTGTGTGTTGAGTAA+TGG 0.555117 5_3:-53051299 Msa0817690:three_prime_UTR
GACAAGAGCATTGTTCTACA+TGG 0.557563 5_3:-53052243 Msa0817690:CDS
TTGTAGTGGATCTTCTGGGT+GGG 0.558206 5_3:-53051555 Msa0817690:intron
GTACATCATCACACACGAGC+TGG 0.565229 5_3:+53051237 None:intergenic
CCGTCACCTTTGGTGTAACC+AGG 0.566415 5_3:+53052119 None:intergenic
GTGATGATGTACGGGTGTGA+TGG 0.569732 5_3:-53051226 Msa0817690:three_prime_UTR
AAAACTTGGCGTATACTCTA+GGG 0.573845 5_3:+53051100 None:intergenic
AGATTTGGAGATTTGAAAGG+TGG 0.576074 5_3:-53052158 Msa0817690:CDS
TTAATAAAGAAACCAAAACT+TGG 0.579264 5_3:+53051086 None:intergenic
GCAGCACCAAGACTACGAGC+AGG 0.585086 5_3:+53051728 None:intergenic
TCAAAGCCAAGATGACCCTA+AGG 0.586870 5_3:-53053245 Msa0817690:CDS
TGGCGTATACTCTAGGGTAG+TGG 0.588319 5_3:+53051106 None:intergenic
GCTCGTGTGTGATGATGTAC+GGG 0.588605 5_3:-53051234 Msa0817690:three_prime_UTR
TCCCAGAAAGACAACCACTT+GGG 0.597140 5_3:-53053276 Msa0817690:CDS
CTTGTAGTGGATCTTCTGGG+TGG 0.598111 5_3:-53051556 Msa0817690:intron
GTAGAACAATGCTCTTGTCA+AGG 0.615840 5_3:+53052247 None:intergenic
CTTTGAGCTGCAATCCCAAG+TGG 0.615951 5_3:+53053262 None:intergenic
TTCCCAGAAAGACAACCACT+TGG 0.616137 5_3:-53053277 Msa0817690:CDS
CCTGGTTACACCAAAGGTGA+CGG 0.620526 5_3:-53052119 Msa0817690:CDS
GGCTCAAACAACGGTGCTGG+TGG 0.625378 5_3:+53053208 None:intergenic
TGATTCTAAGTGTAAGACTG+TGG 0.635046 5_3:-53053077 Msa0817690:CDS
GTAACCAGGAGCAACAAAGT+TGG 0.636963 5_3:+53052133 None:intergenic
ACAGCGAACCCAATTGGCAA+TGG 0.642498 5_3:+53051800 None:intergenic
TGCTGCTATTATCTTCAACA+AGG 0.649253 5_3:-53051711 Msa0817690:CDS
ATTCTAAGTGTAAGACTGTG+GGG 0.650236 5_3:-53053075 Msa0817690:CDS
CAGCACCAAGACTACGAGCA+GGG 0.662928 5_3:+53051729 None:intergenic
TTACATGATCATTCCAACCA+AGG 0.692776 5_3:+53051687 None:intergenic
TGGCTCTGATTACGACCACG+TGG 0.744746 5_3:+53051499 None:intergenic
TCTTGCAGCACTATACCACG+TGG 0.793900 5_3:-53051514 Msa0817690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTCTGTTAT+AGG - chr5_3:53051562-53051581 Msa0817690:intron 10.0%
!!! TATTTTTATTTTTCTGTTAT+AGG - chr5_3:53051562-53051581 Msa0817690:intron 10.0%
!!! TACATATATGTTGTTATTTA+AGG + chr5_3:53051478-53051497 None:intergenic 15.0%
!!! TTAGTACTTATAAGTTTTTA+AGG - chr5_3:53051509-53051528 Msa0817690:CDS 15.0%
!! TAAATAAATTTCATTCAAAC+TGG + chr5_3:53051611-53051630 None:intergenic 15.0%
!!! TATATTAGTAGTTTTTTTTG+TGG - chr5_3:53051724-53051743 Msa0817690:CDS 15.0%
!! AGTGAAACTTATATTTAATA+AGG - chr5_3:53051959-53051978 Msa0817690:intron 15.0%
!! GTGAAACTTATATTTAATAA+GGG - chr5_3:53051960-53051979 Msa0817690:intron 15.0%
!! AATATAACTAATTATTTGTG+TGG - chr5_3:53052587-53052606 Msa0817690:intron 15.0%
!! ATTAATTATTATTCTTGTAG+TGG - chr5_3:53052866-53052885 Msa0817690:intron 15.0%
!! GTAATGTTATTATGATTATT+AGG - chr5_3:53053104-53053123 Msa0817690:CDS 15.0%
!!! TACATATATGTTGTTATTTA+AGG + chr5_3:53051478-53051497 None:intergenic 15.0%
!!! TTAGTACTTATAAGTTTTTA+AGG - chr5_3:53051509-53051528 Msa0817690:CDS 15.0%
!! TAAATAAATTTCATTCAAAC+TGG + chr5_3:53051611-53051630 None:intergenic 15.0%
!!! TATATTAGTAGTTTTTTTTG+TGG - chr5_3:53051724-53051743 Msa0817690:CDS 15.0%
!! AGTGAAACTTATATTTAATA+AGG - chr5_3:53051959-53051978 Msa0817690:intron 15.0%
!! GTGAAACTTATATTTAATAA+GGG - chr5_3:53051960-53051979 Msa0817690:intron 15.0%
!! AATATAACTAATTATTTGTG+TGG - chr5_3:53052587-53052606 Msa0817690:intron 15.0%
!! ATTAATTATTATTCTTGTAG+TGG - chr5_3:53052866-53052885 Msa0817690:intron 15.0%
!! GTAATGTTATTATGATTATT+AGG - chr5_3:53053104-53053123 Msa0817690:CDS 15.0%
!! AAACAGTGATATAAAGAAAA+AGG + chr5_3:53051313-53051332 None:intergenic 20.0%
!! CATTATTAAGTGTATATTGT+CGG + chr5_3:53052550-53052569 None:intergenic 20.0%
!!! CTTATTTTATGAGTAGATTT+TGG - chr5_3:53052610-53052629 Msa0817690:intron 20.0%
!! TTAATAAAGAAACCAAAACT+TGG + chr5_3:53053352-53053371 None:intergenic 20.0%
!! AAACAGTGATATAAAGAAAA+AGG + chr5_3:53051313-53051332 None:intergenic 20.0%
!! CATTATTAAGTGTATATTGT+CGG + chr5_3:53052550-53052569 None:intergenic 20.0%
!!! CTTATTTTATGAGTAGATTT+TGG - chr5_3:53052610-53052629 Msa0817690:intron 20.0%
!! TTAATAAAGAAACCAAAACT+TGG + chr5_3:53053352-53053371 None:intergenic 20.0%
! TTATGAATATGTCCTTATCA+TGG + chr5_3:53051831-53051850 None:intergenic 25.0%
! AAATGCATCTAATGTTAGTT+TGG - chr5_3:53052049-53052068 Msa0817690:intron 25.0%
! CCAAATTGACTAATAAAAGA+TGG + chr5_3:53052087-53052106 None:intergenic 25.0%
!! CCATCTTTTATTAGTCAATT+TGG - chr5_3:53052084-53052103 Msa0817690:intron 25.0%
!!! CTATTTTTATAGTCAGATAC+TGG - chr5_3:53052502-53052521 Msa0817690:intron 25.0%
! TCAGATACTGGATATATAAT+TGG - chr5_3:53052514-53052533 Msa0817690:intron 25.0%
!!! ACAACACTTTTTTGAAGAAA+AGG + chr5_3:53053060-53053079 None:intergenic 25.0%
!!! CTTGAGTGTTATTTTAGATT+TGG + chr5_3:53053244-53053263 None:intergenic 25.0%
! TTATGAATATGTCCTTATCA+TGG + chr5_3:53051831-53051850 None:intergenic 25.0%
! AAATGCATCTAATGTTAGTT+TGG - chr5_3:53052049-53052068 Msa0817690:intron 25.0%
! CCAAATTGACTAATAAAAGA+TGG + chr5_3:53052087-53052106 None:intergenic 25.0%
!! CCATCTTTTATTAGTCAATT+TGG - chr5_3:53052084-53052103 Msa0817690:intron 25.0%
!!! CTATTTTTATAGTCAGATAC+TGG - chr5_3:53052502-53052521 Msa0817690:intron 25.0%
! TCAGATACTGGATATATAAT+TGG - chr5_3:53052514-53052533 Msa0817690:intron 25.0%
!!! ACAACACTTTTTTGAAGAAA+AGG + chr5_3:53053060-53053079 None:intergenic 25.0%
!!! CTTGAGTGTTATTTTAGATT+TGG + chr5_3:53053244-53053263 None:intergenic 25.0%
AAAAATGGAAGCTAAAGAAC+AGG - chr5_3:53051112-53051131 Msa0817690:three_prime_UTR 30.0%
!!! TATCACTGTTTTGACTGTTA+TGG - chr5_3:53051322-53051341 Msa0817690:three_prime_UTR 30.0%
!!! ATCACTGTTTTGACTGTTAT+GGG - chr5_3:53051323-53051342 Msa0817690:three_prime_UTR 30.0%
! TTTCATTCAAACTGGTCTAT+AGG + chr5_3:53051603-53051622 None:intergenic 30.0%
AAGTAACAACTACCATGATA+AGG - chr5_3:53051816-53051835 Msa0817690:intron 30.0%
AAATTACCAAAATGAGAGTG+TGG + chr5_3:53051911-53051930 None:intergenic 30.0%
! ACTCTTCTTAAGTAGTCTTT+TGG + chr5_3:53052013-53052032 None:intergenic 30.0%
TTTGAAGGAAAGACAAGATT+TGG - chr5_3:53052262-53052281 Msa0817690:CDS 30.0%
ACAAGATTTGGAGATTTGAA+AGG - chr5_3:53052274-53052293 Msa0817690:CDS 30.0%
TGATGGTTATGATTGATTGA+CGG + chr5_3:53052451-53052470 None:intergenic 30.0%
TTAATACCAGTTCCAGTAAT+CGG + chr5_3:53052686-53052705 None:intergenic 30.0%
!! TTTGATCACTTTGACTTGAA+GGG + chr5_3:53052964-53052983 None:intergenic 30.0%
!! ATTTGATCACTTTGACTTGA+AGG + chr5_3:53052965-53052984 None:intergenic 30.0%
GTCAAAGTGATCAAATCAAA+CGG - chr5_3:53052969-53052988 Msa0817690:intron 30.0%
ATCATTCAAGACATGTTTGT+GGG - chr5_3:53052998-53053017 Msa0817690:intron 30.0%
CTCAAAACCATAGGAAAATT+AGG + chr5_3:53053162-53053181 None:intergenic 30.0%
!!! ATTTTCCTATGGTTTTGAGT+TGG - chr5_3:53053163-53053182 Msa0817690:CDS 30.0%
TATTTCCAACTCAAAACCAT+AGG + chr5_3:53053171-53053190 None:intergenic 30.0%
!!! TGGTTTTGAGTTGGAAATAA+TGG - chr5_3:53053172-53053191 Msa0817690:CDS 30.0%
!!! GGTTTTGAGTTGGAAATAAT+GGG - chr5_3:53053173-53053192 Msa0817690:CDS 30.0%
!!! GTTTTGAGTTGGAAATAATG+GGG - chr5_3:53053174-53053193 Msa0817690:CDS 30.0%
! ATGAATCATGATAGCGTTAA+GGG + chr5_3:53053289-53053308 None:intergenic 30.0%
AAAAATGGAAGCTAAAGAAC+AGG - chr5_3:53051112-53051131 Msa0817690:three_prime_UTR 30.0%
!!! TATCACTGTTTTGACTGTTA+TGG - chr5_3:53051322-53051341 Msa0817690:three_prime_UTR 30.0%
!!! ATCACTGTTTTGACTGTTAT+GGG - chr5_3:53051323-53051342 Msa0817690:three_prime_UTR 30.0%
! TTTCATTCAAACTGGTCTAT+AGG + chr5_3:53051603-53051622 None:intergenic 30.0%
AAGTAACAACTACCATGATA+AGG - chr5_3:53051816-53051835 Msa0817690:intron 30.0%
AAATTACCAAAATGAGAGTG+TGG + chr5_3:53051911-53051930 None:intergenic 30.0%
! ACTCTTCTTAAGTAGTCTTT+TGG + chr5_3:53052013-53052032 None:intergenic 30.0%
TTTGAAGGAAAGACAAGATT+TGG - chr5_3:53052262-53052281 Msa0817690:CDS 30.0%
ACAAGATTTGGAGATTTGAA+AGG - chr5_3:53052274-53052293 Msa0817690:CDS 30.0%
TGATGGTTATGATTGATTGA+CGG + chr5_3:53052451-53052470 None:intergenic 30.0%
TTAATACCAGTTCCAGTAAT+CGG + chr5_3:53052686-53052705 None:intergenic 30.0%
!! TTTGATCACTTTGACTTGAA+GGG + chr5_3:53052964-53052983 None:intergenic 30.0%
!! ATTTGATCACTTTGACTTGA+AGG + chr5_3:53052965-53052984 None:intergenic 30.0%
GTCAAAGTGATCAAATCAAA+CGG - chr5_3:53052969-53052988 Msa0817690:intron 30.0%
ATCATTCAAGACATGTTTGT+GGG - chr5_3:53052998-53053017 Msa0817690:intron 30.0%
CTCAAAACCATAGGAAAATT+AGG + chr5_3:53053162-53053181 None:intergenic 30.0%
!!! ATTTTCCTATGGTTTTGAGT+TGG - chr5_3:53053163-53053182 Msa0817690:CDS 30.0%
TATTTCCAACTCAAAACCAT+AGG + chr5_3:53053171-53053190 None:intergenic 30.0%
!!! TGGTTTTGAGTTGGAAATAA+TGG - chr5_3:53053172-53053191 Msa0817690:CDS 30.0%
!!! GGTTTTGAGTTGGAAATAAT+GGG - chr5_3:53053173-53053192 Msa0817690:CDS 30.0%
!!! GTTTTGAGTTGGAAATAATG+GGG - chr5_3:53053174-53053193 Msa0817690:CDS 30.0%
! ATGAATCATGATAGCGTTAA+GGG + chr5_3:53053289-53053308 None:intergenic 30.0%
!!! AGGTTTGTGTTTTTGGATTG+AGG + chr5_3:53051086-53051105 None:intergenic 35.0%
CAATCCAAAAACACAAACCT+AGG - chr5_3:53051086-53051105 Msa0817690:three_prime_UTR 35.0%
! TGTTCCTAGGTTTGTGTTTT+TGG + chr5_3:53051093-53051112 None:intergenic 35.0%
CACAAACCTAGGAACAAAAA+TGG - chr5_3:53051097-53051116 Msa0817690:three_prime_UTR 35.0%
!! TAGCTTCCATTTTTGTTCCT+AGG + chr5_3:53051106-53051125 None:intergenic 35.0%
TGATTCTAAGTGTAAGACTG+TGG - chr5_3:53051358-53051377 Msa0817690:three_prime_UTR 35.0%
GATTCTAAGTGTAAGACTGT+GGG - chr5_3:53051359-53051378 Msa0817690:three_prime_UTR 35.0%
ATTCTAAGTGTAAGACTGTG+GGG - chr5_3:53051360-53051379 Msa0817690:three_prime_UTR 35.0%
! AAAGAACCACACTCTCATTT+TGG - chr5_3:53051902-53051921 Msa0817690:intron 35.0%
ATAAATCCAGCAGTGACATT+TGG - chr5_3:53052142-53052161 Msa0817690:CDS 35.0%
TAAATCCAGCAGTGACATTT+GGG - chr5_3:53052143-53052162 Msa0817690:CDS 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr5_3:53052153-53052172 Msa0817690:CDS 35.0%
! TACATGGTGATGCAATGTTT+GGG - chr5_3:53052208-53052227 Msa0817690:CDS 35.0%
AGATTTGGAGATTTGAAAGG+TGG - chr5_3:53052277-53052296 Msa0817690:CDS 35.0%
TAATACCAGTTCCAGTAATC+GGG + chr5_3:53052685-53052704 None:intergenic 35.0%
TGCTGCTATTATCTTCAACA+AGG - chr5_3:53052724-53052743 Msa0817690:intron 35.0%
ATTATCTTCAACAAGGACCT+TGG - chr5_3:53052731-53052750 Msa0817690:intron 35.0%
TTACATGATCATTCCAACCA+AGG + chr5_3:53052751-53052770 None:intergenic 35.0%
!! TATTCTTGTAGTGGATCTTC+TGG - chr5_3:53052875-53052894 Msa0817690:intron 35.0%
!! ATTCTTGTAGTGGATCTTCT+GGG - chr5_3:53052876-53052895 Msa0817690:intron 35.0%
GATCATTCAAGACATGTTTG+TGG - chr5_3:53052997-53053016 Msa0817690:intron 35.0%
! GTAATGGCCTAATTTTCCTA+TGG - chr5_3:53053152-53053171 Msa0817690:CDS 35.0%
! CATGAATCATGATAGCGTTA+AGG + chr5_3:53053290-53053309 None:intergenic 35.0%
AAAACTTGGCGTATACTCTA+GGG + chr5_3:53053338-53053357 None:intergenic 35.0%
!!! AGGTTTGTGTTTTTGGATTG+AGG + chr5_3:53051086-53051105 None:intergenic 35.0%
CAATCCAAAAACACAAACCT+AGG - chr5_3:53051086-53051105 Msa0817690:three_prime_UTR 35.0%
! TGTTCCTAGGTTTGTGTTTT+TGG + chr5_3:53051093-53051112 None:intergenic 35.0%
CACAAACCTAGGAACAAAAA+TGG - chr5_3:53051097-53051116 Msa0817690:three_prime_UTR 35.0%
!! TAGCTTCCATTTTTGTTCCT+AGG + chr5_3:53051106-53051125 None:intergenic 35.0%
TGATTCTAAGTGTAAGACTG+TGG - chr5_3:53051358-53051377 Msa0817690:three_prime_UTR 35.0%
GATTCTAAGTGTAAGACTGT+GGG - chr5_3:53051359-53051378 Msa0817690:three_prime_UTR 35.0%
ATTCTAAGTGTAAGACTGTG+GGG - chr5_3:53051360-53051379 Msa0817690:three_prime_UTR 35.0%
! AAAGAACCACACTCTCATTT+TGG - chr5_3:53051902-53051921 Msa0817690:intron 35.0%
ATAAATCCAGCAGTGACATT+TGG - chr5_3:53052142-53052161 Msa0817690:CDS 35.0%
TAAATCCAGCAGTGACATTT+GGG - chr5_3:53052143-53052162 Msa0817690:CDS 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr5_3:53052153-53052172 Msa0817690:CDS 35.0%
! TACATGGTGATGCAATGTTT+GGG - chr5_3:53052208-53052227 Msa0817690:CDS 35.0%
AGATTTGGAGATTTGAAAGG+TGG - chr5_3:53052277-53052296 Msa0817690:CDS 35.0%
TAATACCAGTTCCAGTAATC+GGG + chr5_3:53052685-53052704 None:intergenic 35.0%
TGCTGCTATTATCTTCAACA+AGG - chr5_3:53052724-53052743 Msa0817690:intron 35.0%
ATTATCTTCAACAAGGACCT+TGG - chr5_3:53052731-53052750 Msa0817690:intron 35.0%
TTACATGATCATTCCAACCA+AGG + chr5_3:53052751-53052770 None:intergenic 35.0%
!! TATTCTTGTAGTGGATCTTC+TGG - chr5_3:53052875-53052894 Msa0817690:intron 35.0%
!! ATTCTTGTAGTGGATCTTCT+GGG - chr5_3:53052876-53052895 Msa0817690:intron 35.0%
GATCATTCAAGACATGTTTG+TGG - chr5_3:53052997-53053016 Msa0817690:intron 35.0%
! GTAATGGCCTAATTTTCCTA+TGG - chr5_3:53053152-53053171 Msa0817690:CDS 35.0%
! CATGAATCATGATAGCGTTA+AGG + chr5_3:53053290-53053309 None:intergenic 35.0%
AAAACTTGGCGTATACTCTA+GGG + chr5_3:53053338-53053357 None:intergenic 35.0%
AAAGAACAGGATGTGTCTCT+AGG - chr5_3:53051125-53051144 Msa0817690:intron 40.0%
AGTTCAGATGGCTCAAACAA+CGG + chr5_3:53051239-53051258 None:intergenic 40.0%
! TGTTAGTGTCACTAGCACAT+AGG + chr5_3:53051797-53051816 None:intergenic 40.0%
GTAGAACAATGCTCTTGTCA+AGG + chr5_3:53052191-53052210 None:intergenic 40.0%
!! GACAAGAGCATTGTTCTACA+TGG - chr5_3:53052192-53052211 Msa0817690:CDS 40.0%
! CTACATGGTGATGCAATGTT+TGG - chr5_3:53052207-53052226 Msa0817690:CDS 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG - chr5_3:53052220-53052239 Msa0817690:CDS 40.0%
!! GGTGTTGTGAAAGGTTTTGA+AGG - chr5_3:53052247-53052266 Msa0817690:CDS 40.0%
TGACGGTGTAAAGAGACTTA+CGG + chr5_3:53052434-53052453 None:intergenic 40.0%
!! ATTTTGGCACCATTGCCAAT+TGG - chr5_3:53052626-53052645 Msa0817690:intron 40.0%
! TTTTGGCACCATTGCCAATT+GGG - chr5_3:53052627-53052646 Msa0817690:intron 40.0%
!! TCACTTTGACTTGAAGGGAA+TGG + chr5_3:53052959-53052978 None:intergenic 40.0%
CATGTGTGTGTGTTGAGTAA+TGG - chr5_3:53053136-53053155 Msa0817690:CDS 40.0%
ATCATGATTCATGTGCTCAC+TGG - chr5_3:53053297-53053316 Msa0817690:CDS 40.0%
CATGTGCTCACTGGAATATT+TGG - chr5_3:53053306-53053325 Msa0817690:CDS 40.0%
CAAAACTTGGCGTATACTCT+AGG + chr5_3:53053339-53053358 None:intergenic 40.0%
! CTAGAGTATACGCCAAGTTT+TGG - chr5_3:53053337-53053356 Msa0817690:exon 40.0%
AAAGAACAGGATGTGTCTCT+AGG - chr5_3:53051125-53051144 Msa0817690:intron 40.0%
AGTTCAGATGGCTCAAACAA+CGG + chr5_3:53051239-53051258 None:intergenic 40.0%
! TGTTAGTGTCACTAGCACAT+AGG + chr5_3:53051797-53051816 None:intergenic 40.0%
GTAGAACAATGCTCTTGTCA+AGG + chr5_3:53052191-53052210 None:intergenic 40.0%
!! GACAAGAGCATTGTTCTACA+TGG - chr5_3:53052192-53052211 Msa0817690:CDS 40.0%
! CTACATGGTGATGCAATGTT+TGG - chr5_3:53052207-53052226 Msa0817690:CDS 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG - chr5_3:53052220-53052239 Msa0817690:CDS 40.0%
!! GGTGTTGTGAAAGGTTTTGA+AGG - chr5_3:53052247-53052266 Msa0817690:CDS 40.0%
TGACGGTGTAAAGAGACTTA+CGG + chr5_3:53052434-53052453 None:intergenic 40.0%
!! ATTTTGGCACCATTGCCAAT+TGG - chr5_3:53052626-53052645 Msa0817690:intron 40.0%
! TTTTGGCACCATTGCCAATT+GGG - chr5_3:53052627-53052646 Msa0817690:intron 40.0%
!! TCACTTTGACTTGAAGGGAA+TGG + chr5_3:53052959-53052978 None:intergenic 40.0%
CATGTGTGTGTGTTGAGTAA+TGG - chr5_3:53053136-53053155 Msa0817690:CDS 40.0%
ATCATGATTCATGTGCTCAC+TGG - chr5_3:53053297-53053316 Msa0817690:CDS 40.0%
CATGTGCTCACTGGAATATT+TGG - chr5_3:53053306-53053325 Msa0817690:CDS 40.0%
CAAAACTTGGCGTATACTCT+AGG + chr5_3:53053339-53053358 None:intergenic 40.0%
! CTAGAGTATACGCCAAGTTT+TGG - chr5_3:53053337-53053356 Msa0817690:exon 40.0%
TTCCCAGAAAGACAACCACT+TGG - chr5_3:53051158-53051177 Msa0817690:three_prime_UTR 45.0%
TCCCAGAAAGACAACCACTT+GGG - chr5_3:53051159-53051178 Msa0817690:three_prime_UTR 45.0%
TCCCAAGTGGTTGTCTTTCT+GGG + chr5_3:53051163-53051182 None:intergenic 45.0%
ATCCCAAGTGGTTGTCTTTC+TGG + chr5_3:53051164-53051183 None:intergenic 45.0%
TCAAAGCCAAGATGACCCTA+AGG - chr5_3:53051190-53051209 Msa0817690:three_prime_UTR 45.0%
GATAGTCCTTAGGGTCATCT+TGG + chr5_3:53051199-53051218 None:intergenic 45.0%
! GTGGCTCTTGATAGTCCTTA+GGG + chr5_3:53051208-53051227 None:intergenic 45.0%
! AGCCATCTGAACTGACTTCA+TGG - chr5_3:53051246-53051265 Msa0817690:three_prime_UTR 45.0%
GACCATGAAGTCAGTTCAGA+TGG + chr5_3:53051251-53051270 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG - chr5_3:53051263-53051282 Msa0817690:three_prime_UTR 45.0%
CATGGTCTTTCTACAGAGCT+GGG - chr5_3:53051264-53051283 Msa0817690:three_prime_UTR 45.0%
TGTAAGACTGTGGGGATTCA+AGG - chr5_3:53051368-53051387 Msa0817690:three_prime_UTR 45.0%
TGGGGATTCAAGGAATTGCT+TGG - chr5_3:53051378-53051397 Msa0817690:three_prime_UTR 45.0%
GGGGATTCAAGGAATTGCTT+GGG - chr5_3:53051379-53051398 Msa0817690:three_prime_UTR 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5_3:53051386-53051405 Msa0817690:three_prime_UTR 45.0%
! GCTCTTGTTTACTGTACTGC+TGG - chr5_3:53051422-53051441 Msa0817690:three_prime_UTR 45.0%
TACTGTACTGCTGGAATCTC+AGG - chr5_3:53051431-53051450 Msa0817690:three_prime_UTR 45.0%
AACTATGCACTGTGTGATGC+AGG - chr5_3:53052112-53052131 Msa0817690:CDS 45.0%
AATAGCCCAAATGTCACTGC+TGG + chr5_3:53052151-53052170 None:intergenic 45.0%
!!! CATTTGGGCTATTTTTGGCG+AGG - chr5_3:53052158-53052177 Msa0817690:CDS 45.0%
GTAACCAGGAGCAACAAAGT+TGG + chr5_3:53052305-53052324 None:intergenic 45.0%
!! GGTCTTGGTGCTGAAATTGT+TGG - chr5_3:53052337-53052356 Msa0817690:intron 45.0%
GACGGTGTAAAGAGACTTAC+GGG + chr5_3:53052433-53052452 None:intergenic 45.0%
AAGAACACAGCGAACCCAAT+TGG + chr5_3:53052644-53052663 None:intergenic 45.0%
AATTGGGTTCGCTGTGTTCT+TGG - chr5_3:53052643-53052662 Msa0817690:intron 45.0%
AGTTCCAGTAATCGGGATAG+TGG + chr5_3:53052678-53052697 None:intergenic 45.0%
ACTATCCCGATTACTGGAAC+TGG - chr5_3:53052677-53052696 Msa0817690:intron 45.0%
ATTAACCCTGCTCGTAGTCT+TGG - chr5_3:53052701-53052720 Msa0817690:intron 45.0%
TCTTCAACAAGGACCTTGGT+TGG - chr5_3:53052735-53052754 Msa0817690:intron 45.0%
!! TTGTAGTGGATCTTCTGGGT+GGG - chr5_3:53052880-53052899 Msa0817690:intron 45.0%
TTCTGGGTGGGACCATTTAT+TGG - chr5_3:53052892-53052911 Msa0817690:intron 45.0%
GCAAGAGCTGCTCCAATAAA+TGG + chr5_3:53052907-53052926 None:intergenic 45.0%
! AGCTCGTGTGTGATGATGTA+CGG - chr5_3:53053200-53053219 Msa0817690:CDS 45.0%
TTCCCAGAAAGACAACCACT+TGG - chr5_3:53051158-53051177 Msa0817690:three_prime_UTR 45.0%
TCCCAGAAAGACAACCACTT+GGG - chr5_3:53051159-53051178 Msa0817690:three_prime_UTR 45.0%
TCCCAAGTGGTTGTCTTTCT+GGG + chr5_3:53051163-53051182 None:intergenic 45.0%
ATCCCAAGTGGTTGTCTTTC+TGG + chr5_3:53051164-53051183 None:intergenic 45.0%
TCAAAGCCAAGATGACCCTA+AGG - chr5_3:53051190-53051209 Msa0817690:three_prime_UTR 45.0%
GATAGTCCTTAGGGTCATCT+TGG + chr5_3:53051199-53051218 None:intergenic 45.0%
! GTGGCTCTTGATAGTCCTTA+GGG + chr5_3:53051208-53051227 None:intergenic 45.0%
! AGCCATCTGAACTGACTTCA+TGG - chr5_3:53051246-53051265 Msa0817690:three_prime_UTR 45.0%
GACCATGAAGTCAGTTCAGA+TGG + chr5_3:53051251-53051270 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG - chr5_3:53051263-53051282 Msa0817690:three_prime_UTR 45.0%
CATGGTCTTTCTACAGAGCT+GGG - chr5_3:53051264-53051283 Msa0817690:three_prime_UTR 45.0%
TGTAAGACTGTGGGGATTCA+AGG - chr5_3:53051368-53051387 Msa0817690:three_prime_UTR 45.0%
TGGGGATTCAAGGAATTGCT+TGG - chr5_3:53051378-53051397 Msa0817690:three_prime_UTR 45.0%
GGGGATTCAAGGAATTGCTT+GGG - chr5_3:53051379-53051398 Msa0817690:three_prime_UTR 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5_3:53051386-53051405 Msa0817690:three_prime_UTR 45.0%
! GCTCTTGTTTACTGTACTGC+TGG - chr5_3:53051422-53051441 Msa0817690:three_prime_UTR 45.0%
TACTGTACTGCTGGAATCTC+AGG - chr5_3:53051431-53051450 Msa0817690:three_prime_UTR 45.0%
AACTATGCACTGTGTGATGC+AGG - chr5_3:53052112-53052131 Msa0817690:CDS 45.0%
AATAGCCCAAATGTCACTGC+TGG + chr5_3:53052151-53052170 None:intergenic 45.0%
!!! CATTTGGGCTATTTTTGGCG+AGG - chr5_3:53052158-53052177 Msa0817690:CDS 45.0%
GTAACCAGGAGCAACAAAGT+TGG + chr5_3:53052305-53052324 None:intergenic 45.0%
!! GGTCTTGGTGCTGAAATTGT+TGG - chr5_3:53052337-53052356 Msa0817690:intron 45.0%
GACGGTGTAAAGAGACTTAC+GGG + chr5_3:53052433-53052452 None:intergenic 45.0%
AAGAACACAGCGAACCCAAT+TGG + chr5_3:53052644-53052663 None:intergenic 45.0%
AATTGGGTTCGCTGTGTTCT+TGG - chr5_3:53052643-53052662 Msa0817690:intron 45.0%
AGTTCCAGTAATCGGGATAG+TGG + chr5_3:53052678-53052697 None:intergenic 45.0%
ACTATCCCGATTACTGGAAC+TGG - chr5_3:53052677-53052696 Msa0817690:intron 45.0%
ATTAACCCTGCTCGTAGTCT+TGG - chr5_3:53052701-53052720 Msa0817690:intron 45.0%
TCTTCAACAAGGACCTTGGT+TGG - chr5_3:53052735-53052754 Msa0817690:intron 45.0%
!! TTGTAGTGGATCTTCTGGGT+GGG - chr5_3:53052880-53052899 Msa0817690:intron 45.0%
TTCTGGGTGGGACCATTTAT+TGG - chr5_3:53052892-53052911 Msa0817690:intron 45.0%
GCAAGAGCTGCTCCAATAAA+TGG + chr5_3:53052907-53052926 None:intergenic 45.0%
! AGCTCGTGTGTGATGATGTA+CGG - chr5_3:53053200-53053219 Msa0817690:CDS 45.0%
!! ATAAATAATAATTTGATATA+AGG - chr5_3:53051877-53051896 Msa0817690:intron 5.0%
!! AAATATTTATAATAATTTGA+TGG + chr5_3:53052468-53052487 None:intergenic 5.0%
!! ATAAATAATAATTTGATATA+AGG - chr5_3:53051877-53051896 Msa0817690:intron 5.0%
!! AAATATTTATAATAATTTGA+TGG + chr5_3:53052468-53052487 None:intergenic 5.0%
CTTTGAGCTGCAATCCCAAG+TGG + chr5_3:53051176-53051195 None:intergenic 50.0%
! GGTGGCTCTTGATAGTCCTT+AGG + chr5_3:53051209-53051228 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5_3:53051389-53051408 Msa0817690:three_prime_UTR 50.0%
TATGCACTGTGTGATGCAGG+TGG - chr5_3:53052115-53052134 Msa0817690:CDS 50.0%
!! TTGGGTGCTATTTGTGGTGC+TGG - chr5_3:53052226-53052245 Msa0817690:CDS 50.0%
!! TGTGGTGCTGGTGTTGTGAA+AGG - chr5_3:53052238-53052257 Msa0817690:CDS 50.0%
GTTGCTCCTGGTTACACCAA+AGG - chr5_3:53052310-53052329 Msa0817690:intron 50.0%
CCTGGTTACACCAAAGGTGA+CGG - chr5_3:53052316-53052335 Msa0817690:intron 50.0%
! TACACCAAAGGTGACGGTCT+TGG - chr5_3:53052322-53052341 Msa0817690:intron 50.0%
TCTGGCGCTACGTTTAGCAT+CGG + chr5_3:53052398-53052417 None:intergenic 50.0%
TACGGGAACATGAGAGTCTC+TGG + chr5_3:53052416-53052435 None:intergenic 50.0%
ACAGCGAACCCAATTGGCAA+TGG + chr5_3:53052638-53052657 None:intergenic 50.0%
CGCTGTGTTCTTGGTTCACT+TGG - chr5_3:53052652-53052671 Msa0817690:intron 50.0%
TTGGCCACTATCCCGATTAC+TGG - chr5_3:53052671-53052690 Msa0817690:intron 50.0%
!! CTTGTAGTGGATCTTCTGGG+TGG - chr5_3:53052879-53052898 Msa0817690:intron 50.0%
TCTTGCAGCACTATACCACG+TGG - chr5_3:53052921-53052940 Msa0817690:intron 50.0%
GTACATCATCACACACGAGC+TGG + chr5_3:53053201-53053220 None:intergenic 50.0%
! GCTCGTGTGTGATGATGTAC+GGG - chr5_3:53053201-53053220 Msa0817690:CDS 50.0%
! GTGATGATGTACGGGTGTGA+TGG - chr5_3:53053209-53053228 Msa0817690:CDS 50.0%
!! TGGCGTATACTCTAGGGTAG+TGG + chr5_3:53053332-53053351 None:intergenic 50.0%
CTTTGAGCTGCAATCCCAAG+TGG + chr5_3:53051176-53051195 None:intergenic 50.0%
! GGTGGCTCTTGATAGTCCTT+AGG + chr5_3:53051209-53051228 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5_3:53051389-53051408 Msa0817690:three_prime_UTR 50.0%
TATGCACTGTGTGATGCAGG+TGG - chr5_3:53052115-53052134 Msa0817690:CDS 50.0%
!! TTGGGTGCTATTTGTGGTGC+TGG - chr5_3:53052226-53052245 Msa0817690:CDS 50.0%
!! TGTGGTGCTGGTGTTGTGAA+AGG - chr5_3:53052238-53052257 Msa0817690:CDS 50.0%
GTTGCTCCTGGTTACACCAA+AGG - chr5_3:53052310-53052329 Msa0817690:intron 50.0%
CCTGGTTACACCAAAGGTGA+CGG - chr5_3:53052316-53052335 Msa0817690:intron 50.0%
! TACACCAAAGGTGACGGTCT+TGG - chr5_3:53052322-53052341 Msa0817690:intron 50.0%
TCTGGCGCTACGTTTAGCAT+CGG + chr5_3:53052398-53052417 None:intergenic 50.0%
TACGGGAACATGAGAGTCTC+TGG + chr5_3:53052416-53052435 None:intergenic 50.0%
ACAGCGAACCCAATTGGCAA+TGG + chr5_3:53052638-53052657 None:intergenic 50.0%
CGCTGTGTTCTTGGTTCACT+TGG - chr5_3:53052652-53052671 Msa0817690:intron 50.0%
TTGGCCACTATCCCGATTAC+TGG - chr5_3:53052671-53052690 Msa0817690:intron 50.0%
!! CTTGTAGTGGATCTTCTGGG+TGG - chr5_3:53052879-53052898 Msa0817690:intron 50.0%
TCTTGCAGCACTATACCACG+TGG - chr5_3:53052921-53052940 Msa0817690:intron 50.0%
GTACATCATCACACACGAGC+TGG + chr5_3:53053201-53053220 None:intergenic 50.0%
! GCTCGTGTGTGATGATGTAC+GGG - chr5_3:53053201-53053220 Msa0817690:CDS 50.0%
! GTGATGATGTACGGGTGTGA+TGG - chr5_3:53053209-53053228 Msa0817690:CDS 50.0%
!! TGGCGTATACTCTAGGGTAG+TGG + chr5_3:53053332-53053351 None:intergenic 50.0%
!! TCAAACAACGGTGCTGGTGG+TGG + chr5_3:53051227-53051246 None:intergenic 55.0%
GATGGCTCAAACAACGGTGC+TGG + chr5_3:53051233-53051252 None:intergenic 55.0%
GGTGCCAACTTTGTTGCTCC+TGG - chr5_3:53052298-53052317 Msa0817690:CDS 55.0%
! CCGTCACCTTTGGTGTAACC+AGG + chr5_3:53052319-53052338 None:intergenic 55.0%
AGCACCAAGACCGTCACCTT+TGG + chr5_3:53052329-53052348 None:intergenic 55.0%
!! AGCATCGGTGGCTGAGAAGA+CGG + chr5_3:53052383-53052402 None:intergenic 55.0%
CAGCACCAAGACTACGAGCA+GGG + chr5_3:53052709-53052728 None:intergenic 55.0%
!! TGGCTCTGATTACGACCACG+TGG + chr5_3:53052939-53052958 None:intergenic 55.0%
!! TCAAACAACGGTGCTGGTGG+TGG + chr5_3:53051227-53051246 None:intergenic 55.0%
GATGGCTCAAACAACGGTGC+TGG + chr5_3:53051233-53051252 None:intergenic 55.0%
GGTGCCAACTTTGTTGCTCC+TGG - chr5_3:53052298-53052317 Msa0817690:CDS 55.0%
! CCGTCACCTTTGGTGTAACC+AGG + chr5_3:53052319-53052338 None:intergenic 55.0%
AGCACCAAGACCGTCACCTT+TGG + chr5_3:53052329-53052348 None:intergenic 55.0%
!! AGCATCGGTGGCTGAGAAGA+CGG + chr5_3:53052383-53052402 None:intergenic 55.0%
CAGCACCAAGACTACGAGCA+GGG + chr5_3:53052709-53052728 None:intergenic 55.0%
!! TGGCTCTGATTACGACCACG+TGG + chr5_3:53052939-53052958 None:intergenic 55.0%
! GGCTCAAACAACGGTGCTGG+TGG + chr5_3:53051230-53051249 None:intergenic 60.0%
! GGCGCTACGTTTAGCATCGG+TGG + chr5_3:53052395-53052414 None:intergenic 60.0%
GCAGCACCAAGACTACGAGC+AGG + chr5_3:53052710-53052729 None:intergenic 60.0%
! GGCTCAAACAACGGTGCTGG+TGG + chr5_3:53051230-53051249 None:intergenic 60.0%
! GGCGCTACGTTTAGCATCGG+TGG + chr5_3:53052395-53052414 None:intergenic 60.0%
GCAGCACCAAGACTACGAGC+AGG + chr5_3:53052710-53052729 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53051062 53053395 53051062 ID=Msa0817690;Name=Msa0817690
chr5_3 mRNA 53051062 53053395 53051062 ID=Msa0817690-mRNA-1;Parent=Msa0817690;Name=Msa0817690-mRNA-1;_AED=0.05;_eAED=0.05;_QI=54|0.75|0.8|1|0.75|0.6|5|397|269
chr5_3 exon 53051062 53051134 53051062 ID=Msa0817690-mRNA-1:exon:15978;Parent=Msa0817690-mRNA-1
chr5_3 exon 53051155 53051571 53051155 ID=Msa0817690-mRNA-1:exon:15977;Parent=Msa0817690-mRNA-1
chr5_3 exon 53051691 53051831 53051691 ID=Msa0817690-mRNA-1:exon:15976;Parent=Msa0817690-mRNA-1
chr5_3 exon 53052085 53052323 53052085 ID=Msa0817690-mRNA-1:exon:15975;Parent=Msa0817690-mRNA-1
chr5_3 exon 53053005 53053395 53053005 ID=Msa0817690-mRNA-1:exon:15974;Parent=Msa0817690-mRNA-1
chr5_3 five_prime_UTR 53053342 53053395 53053342 ID=Msa0817690-mRNA-1:five_prime_utr;Parent=Msa0817690-mRNA-1
chr5_3 CDS 53053005 53053341 53053005 ID=Msa0817690-mRNA-1:cds;Parent=Msa0817690-mRNA-1
chr5_3 CDS 53052085 53052323 53052085 ID=Msa0817690-mRNA-1:cds;Parent=Msa0817690-mRNA-1
chr5_3 CDS 53051691 53051831 53051691 ID=Msa0817690-mRNA-1:cds;Parent=Msa0817690-mRNA-1
chr5_3 CDS 53051479 53051571 53051479 ID=Msa0817690-mRNA-1:cds;Parent=Msa0817690-mRNA-1
chr5_3 three_prime_UTR 53051155 53051478 53051155 ID=Msa0817690-mRNA-1:three_prime_utr;Parent=Msa0817690-mRNA-1
chr5_3 three_prime_UTR 53051062 53051134 53051062 ID=Msa0817690-mRNA-1:three_prime_utr;Parent=Msa0817690-mRNA-1
Gene Sequence

>Msa0817690

ATGGAAGCTAAAGAACAGGATGTGTCTCTAGGAGCAAACAAATTCCCAGAAAGACAACCACTTGGGATTGCAGCTCAAAGCCAAGATGACCCTAAGGACTATCAAGAGCCACCACCAGCACCGTTGTTTGAGCCATCTGAACTGACTTCATGGTCTTTCTACAGAGCTGGGATAGCTGAGTTCGTTGCTACTTTCCTTTTTCTTTATATCACTGTTTTGACTGTTATGGGTGTTGTTAGAGCTGATTCTAAGTGTAAGACTGTGGGGATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGTACTGCTGGAATCTCAGGTGGTCACATAAATCCAGCAGTGACATTTGGGCTATTTTTGGCGAGGAAATTGTCCTTGACAAGAGCATTGTTCTACATGGTGATGCAATGTTTGGGTGCTATTTGTGGTGCTGGTGTTGTGAAAGGTTTTGAAGGAAAGACAAGATTTGGAGATTTGAAAGGTGGTGCCAACTTTGTTGCTCCTGGTTACACCAAAGGTGACGGTCTTGGTGCTGAAATTGTTGGCACTTTCATTCTTATTTTGGCACCATTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACTATCCCGATTACTGGAACTGGTATTAACCCTGCTCGTAGTCTTGGTGCTGCTATTATCTTCAACAAGGACCTTGGTTGGAATGATCATTGGATCTTCTGGGTGGGACCATTTATTGGAGCAGCTCTTGCAGCACTATACCACGTGGTCGTAATCAGAGCCATTCCCTTCAAGTCAAAGTGA

Protein sequence

>Msa0817690

MEAKEQDVSLGANKFPERQPLGIAAQSQDDPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITVLTVMGVVRADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFEGKTRFGDLKGGANFVAPGYTKGDGLGAEIVGTFILILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWNDHWIFWVGPFIGAALAALYHVVVIRAIPFKSK*