AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438510 MtrunA17_Chr1g0212321 96.095 461 18 0 26 486 26 486 0.0 872
Msa1438510 MtrunA17_Chr1g0165201 65.880 466 124 6 32 486 28 469 0.0 598
Msa1438510 MtrunA17_Chr1g0210201 49.140 407 194 5 82 486 72 467 1.08e-132 392
Msa1438510 MtrunA17_Chr7g0275731 46.697 439 222 9 54 486 52 484 3.35e-124 371
Msa1438510 MtrunA17_Chr6g0484901 40.159 503 258 11 1 486 15 491 1.63e-113 343
Msa1438510 MtrunA17_Chr8g0390761 38.547 358 211 6 126 479 96 448 3.55e-88 277
Msa1438510 MtrunA17_Chr3g0130931 37.292 421 237 12 78 486 43 448 3.87e-84 266
Msa1438510 MtrunA17_Chr3g0099891 39.773 352 193 9 143 486 114 454 4.39e-73 238
Msa1438510 MtrunA17_Chr4g0001991 35.147 441 247 12 67 486 95 517 3.71e-72 237
Msa1438510 MtrunA17_Chr3g0095891 33.638 437 249 9 81 486 32 458 3.07e-71 233
Msa1438510 MtrunA17_Chr5g0419291 33.176 425 256 12 73 486 21 428 5.32e-69 226
Msa1438510 MtrunA17_Chr2g0291201 32.883 444 245 16 79 486 25 451 2.11e-67 223
Msa1438510 MtrunA17_Chr3g0099901 40.000 360 197 8 138 486 134 485 9.53e-67 222
Msa1438510 MtrunA17_Chr8g0386441 32.000 425 262 12 73 486 21 429 2.30e-66 219
Msa1438510 MtrunA17_Chr5g0442921 30.108 558 313 16 1 486 1 553 8.21e-66 221
Msa1438510 MtrunA17_Chr5g0435871 32.477 428 258 11 73 486 24 434 7.33e-65 216
Msa1438510 MtrunA17_Chr5g0435971 32.710 428 257 11 73 486 21 431 5.72e-64 213
Msa1438510 MtrunA17_Chr8g0352671 31.429 420 257 12 82 486 33 436 2.18e-61 207
Msa1438510 MtrunA17_Chr8g0352661 31.019 432 264 12 73 486 21 436 4.84e-58 198
Msa1438510 MtrunA17_Chr6g0487471 32.401 429 260 11 73 486 21 434 4.88e-58 198
Msa1438510 MtrunA17_Chr6g0486981 32.250 400 242 13 107 486 46 436 2.37e-57 196
Msa1438510 MtrunA17_Chr2g0307991 32.990 388 225 12 117 486 34 404 1.94e-56 193
Msa1438510 MtrunA17_Chr2g0333991 32.067 421 249 18 82 483 30 432 3.40e-56 193
Msa1438510 MtrunA17_Chr2g0310831 30.000 430 255 16 82 486 32 440 2.08e-55 191
Msa1438510 MtrunA17_Chr2g0308001 34.819 359 208 13 146 486 58 408 7.04e-55 189
Msa1438510 MtrunA17_Chr5g0415951 31.354 421 259 15 82 486 28 434 2.33e-54 188
Msa1438510 MtrunA17_Chr2g0311451 32.311 424 250 18 82 486 30 435 8.13e-54 187
Msa1438510 MtrunA17_Chr2g0310821 29.621 422 254 14 81 486 48 442 3.14e-53 185
Msa1438510 MtrunA17_Chr3g0087851 33.983 359 213 12 144 486 86 436 5.34e-53 184
Msa1438510 MtrunA17_Chr4g0061641 33.898 354 207 11 147 486 56 396 3.65e-51 179
Msa1438510 MtrunA17_Chr5g0395931 33.613 357 214 11 145 486 87 435 2.36e-50 177
Msa1438510 MtrunA17_Chr5g0395871 33.613 357 212 10 144 486 79 424 3.22e-50 177
Msa1438510 MtrunA17_Chr2g0310801 29.844 449 256 16 66 486 16 433 4.20e-50 177
Msa1438510 MtrunA17_Chr5g0395911 32.865 356 217 11 145 486 66 413 1.61e-49 174
Msa1438510 MtrunA17_Chr6g0457401 32.113 355 216 12 147 486 92 436 6.84e-48 171
Msa1438510 MtrunA17_Chr1g0164401 34.571 350 211 8 144 486 90 428 1.00e-47 170
Msa1438510 MtrunA17_Chr8g0353261 29.878 492 280 12 1 486 1 433 1.35e-44 162
Msa1438510 MtrunA17_Chr4g0023351 40.092 217 117 6 146 349 58 274 4.37e-44 157
Msa1438510 MtrunA17_Chr3g0133071 32.500 360 225 8 136 486 87 437 4.02e-42 155
Msa1438510 MtrunA17_Chr2g0307461 31.165 369 216 12 147 486 71 430 5.25e-42 155
Msa1438510 MtrunA17_Chr2g0312941 28.571 378 222 10 144 484 85 451 2.85e-37 142
Msa1438510 MtrunA17_Chr7g0265331 28.571 392 235 14 130 486 59 440 4.90e-33 131
Msa1438510 MtrunA17_Chr2g0309561 26.059 472 278 15 79 486 44 508 2.70e-32 129
Msa1438510 MtrunA17_Chr3g0082281 34.965 286 171 7 208 486 42 319 3.89e-32 125
Msa1438510 MtrunA17_Chr4g0056211 27.970 404 221 16 146 486 74 470 6.56e-32 127
Msa1438510 MtrunA17_Chr3g0112051 28.926 363 204 15 149 486 76 409 3.22e-31 125
Msa1438510 MtrunA17_Chr7g0267171 28.645 391 216 14 145 486 89 465 5.99e-31 124
Msa1438510 MtrunA17_Chr7g0239001 30.769 377 209 17 149 486 62 425 9.00e-31 124
Msa1438510 MtrunA17_Chr5g0399171 26.617 402 228 15 146 486 74 469 1.26e-30 124
Msa1438510 MtrunA17_Chr1g0179091 26.065 399 228 15 102 486 21 366 6.90e-30 120
Msa1438510 MtrunA17_Chr1g0179751 28.087 413 253 14 103 481 62 464 9.74e-30 122
Msa1438510 MtrunA17_Chr8g0352691 33.829 269 157 10 228 486 2 259 2.54e-29 115
Msa1438510 MtrunA17_Chr2g0320621 28.852 357 198 16 145 463 76 414 6.77e-29 119
Msa1438510 MtrunA17_Chr4g0027681 27.586 377 224 16 144 486 75 436 3.21e-28 117
Msa1438510 MtrunA17_Chr3g0110191 27.123 365 224 15 149 486 89 438 4.14e-28 116
Msa1438510 MtrunA17_Chr5g0434411 27.198 364 229 15 149 486 84 437 2.14e-27 114
Msa1438510 MtrunA17_Chr7g0221681 25.455 385 236 13 138 486 64 433 1.08e-26 112
Msa1438510 MtrunA17_Chr4g0053721 26.503 366 233 12 144 486 78 430 1.33e-26 113
Msa1438510 MtrunA17_Chr5g0401601 25.414 362 242 10 144 486 86 438 1.42e-26 113
Msa1438510 MtrunA17_Chr5g0419151 32.963 270 156 13 230 486 110 367 2.56e-26 110
Msa1438510 MtrunA17_Chr5g0395891 29.836 305 183 11 201 486 20 312 3.03e-26 108
Msa1438510 MtrunA17_Chr7g0249451 25.995 377 232 15 138 481 63 425 5.81e-26 110
Msa1438510 MtrunA17_Chr1g0189381 25.916 382 237 15 138 486 61 429 1.74e-24 106
Msa1438510 MtrunA17_Chr5g0406001 26.579 380 208 16 147 486 113 461 1.48e-22 100
Msa1438510 MtrunA17_Chr6g0484731 25.258 388 233 17 137 486 182 550 2.33e-22 100
Msa1438510 MtrunA17_Chr8g0352681 30.921 152 94 3 73 222 22 164 3.63e-21 90.5
Msa1438510 MtrunA17_Chr8g0371351 26.431 367 225 13 147 486 101 449 5.31e-21 95.9
Msa1438510 MtrunA17_Chr8g0384731 24.731 372 231 15 145 486 72 424 7.21e-21 94.7
Msa1438510 MtrunA17_Chr5g0434441 26.741 359 229 14 149 481 71 421 3.10e-20 93.2
Msa1438510 MtrunA17_Chr8g0371371 27.346 373 212 20 147 486 113 459 3.49e-20 93.6
Msa1438510 MtrunA17_Chr5g0425141 25.490 408 257 14 103 486 65 449 4.08e-20 93.2
Msa1438510 MtrunA17_Chr3g0130741 25.000 376 224 15 145 486 83 434 1.35e-19 91.3
Msa1438510 MtrunA17_Chr2g0287821 24.747 396 223 16 141 481 63 438 1.35e-17 85.1
Msa1438510 MtrunA17_Chr3g0124421 24.590 366 235 11 147 486 100 450 7.17e-17 83.2
Msa1438510 MtrunA17_Chr1g0159791 25.203 369 224 15 145 481 56 404 1.14e-16 82.0
Msa1438510 MtrunA17_Chr4g0010951 26.648 349 196 17 137 448 52 377 1.48e-16 82.0
Msa1438510 MtrunA17_Chr3g0078321 23.514 387 246 17 132 486 44 412 3.37e-16 80.5
Msa1438510 MtrunA17_Chr4g0065581 23.587 407 222 17 146 481 49 437 2.30e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438510 AT3G20015.1 66.667 462 132 3 31 486 25 470 0.0 594
Msa1438510 AT3G18490.1 46.092 499 231 10 11 486 17 500 1.24e-135 401
Msa1438510 AT1G25510.1 44.586 471 236 8 33 486 21 483 3.08e-130 387
Msa1438510 AT1G01300.1 48.434 415 200 7 82 486 74 484 5.23e-123 368
Msa1438510 AT3G61820.1 45.863 423 209 7 82 486 63 483 2.56e-119 358
Msa1438510 AT5G10770.1 38.389 422 239 10 79 486 59 473 4.61e-85 270
Msa1438510 AT5G10760.1 36.804 413 246 8 79 486 62 464 3.72e-74 241
Msa1438510 AT2G03200.1 37.119 361 205 10 143 486 103 458 5.21e-73 238
Msa1438510 AT1G79720.1 34.360 422 243 8 82 481 68 477 7.91e-66 220
Msa1438510 AT5G33340.1 34.772 417 241 13 84 486 35 434 1.87e-65 218
Msa1438510 AT1G64830.1 34.048 420 243 14 82 486 28 428 5.04e-63 211
Msa1438510 AT3G25700.1 33.684 380 224 11 134 486 71 449 6.41e-60 204
Msa1438510 AT2G42980.1 31.670 461 277 13 63 486 65 524 7.83e-59 202
Msa1438510 AT3G59080.1 32.187 407 249 9 105 486 128 532 1.88e-58 202
Msa1438510 AT1G09750.1 33.247 388 238 10 110 486 71 448 3.09e-56 194
Msa1438510 AT2G28040.2 32.479 351 203 8 146 486 55 381 4.38e-54 186
Msa1438510 AT3G54400.1 32.258 434 259 14 63 486 16 424 7.45e-54 187
Msa1438510 AT2G28040.1 32.479 351 203 8 146 486 64 390 7.47e-54 186
Msa1438510 AT2G28010.1 31.362 389 226 9 107 486 35 391 2.06e-51 179
Msa1438510 AT2G28030.1 32.378 349 205 8 147 486 61 387 7.90e-51 178
Msa1438510 AT3G59080.2 30.923 401 226 8 105 486 128 496 1.32e-50 180
Msa1438510 AT1G31450.1 28.873 426 267 13 82 486 31 441 7.76e-48 171
Msa1438510 AT2G28220.1 31.549 355 204 11 147 486 67 397 1.09e-45 164
Msa1438510 AT2G35615.1 27.163 416 266 15 82 473 28 430 7.64e-45 163
Msa1438510 AT5G07030.1 33.144 353 216 9 144 486 112 454 2.84e-44 162
Msa1438510 AT2G28225.1 29.296 355 212 11 147 486 67 397 3.25e-41 152
Msa1438510 AT4G30040.1 31.503 346 207 11 147 473 85 419 4.52e-41 152
Msa1438510 AT2G23945.1 28.241 432 251 18 78 473 27 435 1.48e-40 152
Msa1438510 AT3G12700.1 28.404 426 270 14 81 486 50 460 5.94e-38 144
Msa1438510 AT3G02740.1 28.533 368 226 14 145 486 83 439 3.78e-34 134
Msa1438510 AT3G02740.2 28.415 366 225 14 147 486 10 364 8.71e-34 132
Msa1438510 AT4G30030.1 30.836 347 196 15 147 470 78 403 1.26e-33 132
Msa1438510 AT2G36670.2 29.279 444 258 18 77 486 36 457 1.94e-33 132
Msa1438510 AT2G39710.1 30.053 376 211 17 149 485 67 429 4.04e-33 130
Msa1438510 AT2G36670.4 30.163 368 219 14 147 486 34 391 5.97e-33 130
Msa1438510 AT2G36670.3 30.163 368 219 14 147 486 34 391 5.97e-33 130
Msa1438510 AT2G36670.1 28.731 449 259 18 77 486 36 462 8.44e-33 131
Msa1438510 AT5G43100.1 28.177 362 224 13 144 486 73 417 3.09e-32 130
Msa1438510 AT5G43100.2 28.177 362 224 13 144 486 73 417 3.44e-32 129
Msa1438510 AT5G22850.1 27.930 401 239 18 95 463 35 417 4.62e-30 123
Msa1438510 AT5G36260.1 25.876 371 233 13 145 486 76 433 9.88e-30 122
Msa1438510 AT1G66180.1 27.624 362 229 13 149 486 74 426 1.81e-29 120
Msa1438510 AT5G02190.1 29.521 376 205 19 156 486 82 442 3.26e-28 117
Msa1438510 AT5G37540.1 27.123 365 231 13 149 486 82 438 4.85e-28 116
Msa1438510 AT1G05840.1 27.394 376 224 15 145 486 78 438 8.99e-28 116
Msa1438510 AT3G50050.1 27.322 366 224 12 144 486 90 436 4.78e-27 115
Msa1438510 AT1G65240.1 25.067 371 233 14 145 486 72 426 3.44e-26 111
Msa1438510 AT5G45120.1 24.638 414 242 16 136 486 72 478 4.54e-25 108
Msa1438510 AT3G52500.1 25.355 493 279 19 42 486 16 467 1.25e-24 107
Msa1438510 AT1G49050.1 25.355 422 242 19 113 486 172 568 1.36e-24 107
Msa1438510 AT1G49050.3 28.146 302 181 13 113 393 172 458 2.20e-24 106
Msa1438510 AT1G08210.3 27.568 370 229 14 145 486 130 488 8.72e-24 105
Msa1438510 AT3G25700.2 38.926 149 77 4 134 268 71 219 8.89e-24 102
Msa1438510 AT1G08210.1 27.568 370 229 14 145 486 82 440 9.11e-24 104
Msa1438510 AT1G08210.4 27.568 370 229 14 145 486 116 474 9.89e-24 104
Msa1438510 AT1G77480.2 27.737 411 232 20 111 486 39 419 2.17e-23 102
Msa1438510 AT1G49050.2 25.000 388 221 18 147 486 30 395 3.23e-23 102
Msa1438510 AT1G77480.1 27.737 411 232 20 111 486 39 419 4.74e-23 102
Msa1438510 AT1G08210.2 28.829 333 199 13 145 450 82 403 4.89e-23 102
Msa1438510 AT4G12920.1 26.425 386 227 12 112 473 22 374 1.78e-22 99.8
Msa1438510 AT3G51350.1 26.301 365 207 15 147 481 102 434 1.92e-20 94.7
Msa1438510 AT2G17760.1 26.301 365 225 16 147 486 104 449 8.99e-20 92.4
Msa1438510 AT3G51340.2 27.957 372 209 18 147 486 103 447 9.08e-20 92.4
Msa1438510 AT4G16563.1 27.182 401 205 17 164 486 100 491 1.57e-19 91.7
Msa1438510 AT4G35880.1 24.728 368 226 13 147 486 107 451 8.65e-19 89.7
Msa1438510 AT1G44130.1 26.178 382 213 18 145 486 47 399 5.93e-18 86.3
Msa1438510 AT4G35880.2 25.948 343 203 14 147 461 107 426 6.02e-18 86.7
Msa1438510 AT3G51360.9 23.661 448 281 17 73 486 25 445 8.33e-18 86.3
Msa1438510 AT3G51360.1 23.661 448 281 17 73 486 15 435 1.15e-17 85.9
Msa1438510 AT3G51340.3 27.707 314 174 14 147 431 103 392 1.49e-17 85.1
Msa1438510 AT4G33490.2 24.934 377 225 15 145 486 58 411 1.52e-17 85.1
Msa1438510 AT3G42550.1 23.002 413 243 16 95 486 31 389 2.96e-17 84.3
Msa1438510 AT3G51360.6 24.113 423 260 17 73 461 25 420 3.82e-17 84.0
Msa1438510 AT4G33490.1 30.078 256 138 12 145 381 55 288 4.93e-17 83.6
Msa1438510 AT3G51360.10 24.113 423 260 17 73 461 15 410 5.07e-17 83.6
Msa1438510 AT3G51360.5 24.156 385 234 15 73 426 25 382 7.51e-17 82.8
Msa1438510 AT3G51360.4 24.156 385 234 15 73 426 15 372 1.31e-16 82.0
Msa1438510 AT3G51360.7 23.978 367 232 14 147 486 5 351 8.10e-16 79.7
Msa1438510 AT3G51340.4 26.804 291 163 13 147 408 103 372 3.06e-15 77.8
Msa1438510 AT3G51340.1 26.804 291 163 13 147 408 103 372 3.07e-15 78.6
Msa1438510 AT3G51360.2 24.189 339 201 13 73 382 25 336 1.22e-14 75.5
Msa1438510 AT5G48430.1 28.448 232 147 7 265 481 161 388 1.02e-12 70.1

Find 174 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGGCAGTGACATTATT+TGG 0.112279 tig0028570:+19275 Msa1438510:CDS
ATTTCTGCCTTTAACATTTC+CGG 0.183134 tig0028570:+19049 Msa1438510:CDS
GGCTTTCGGGTCTTGGAGTT+GGG 0.185714 tig0028570:+19785 Msa1438510:CDS
TTCGGGTCGGGTGTGGTTTC+GGG 0.195700 tig0028570:+19175 Msa1438510:CDS
GCATTTGCTCCTTCTTCTTC+AGG 0.218132 tig0028570:+20126 Msa1438510:CDS
AATGGATACTCCTGATGTTT+TGG 0.222815 tig0028570:-19962 None:intergenic
GTTCGGGTCGGGTGTGGTTT+CGG 0.228106 tig0028570:+19174 Msa1438510:CDS
GCCGGCTTACAATGCATTTC+GGG 0.244466 tig0028570:+19909 Msa1438510:CDS
GGTATGTTTGTTGGAGCAGC+TGG 0.262458 tig0028570:+19562 Msa1438510:CDS
TCATCTGGGTCGCTAGAATT+TGG 0.263511 tig0028570:+19685 Msa1438510:CDS
TGCCGTTATGAGGTTTCTTA+TGG 0.268217 tig0028570:+19439 Msa1438510:CDS
CGCCGGCTTACAATGCATTT+CGG 0.291370 tig0028570:+19908 Msa1438510:CDS
GGATGGAGCTAATGGGTATA+TGG 0.294523 tig0028570:+20197 Msa1438510:CDS
TATATCGGGCTTTCGGGTCT+TGG 0.310043 tig0028570:+19778 Msa1438510:CDS
GGGCTTTCGGGTCTTGGAGT+TGG 0.316663 tig0028570:+19784 Msa1438510:CDS
CGCCAGTCTGACCACCTAAT+TGG 0.318952 tig0028570:-19624 None:intergenic
GCAGCTGGGTTGTTGGGTCT+TGG 0.325606 tig0028570:+19577 Msa1438510:CDS
TCTTCAGGACTTTCCATCAT+AGG 0.325784 tig0028570:+20141 Msa1438510:CDS
AAACGGGTTTGTGACGGTTC+GGG 0.329915 tig0028570:+20005 Msa1438510:CDS
AAATTTCAATCCCTTCTTGC+TGG 0.331540 tig0028570:-20170 None:intergenic
GAATGGAGAGAGATTCTAAA+AGG 0.332342 tig0028570:+19098 Msa1438510:CDS
TTGCTGGATGTTTCCTATGA+TGG 0.341457 tig0028570:-20154 None:intergenic
AAATGAATTGGGTGAGGGAG+GGG 0.345584 tig0028570:+19846 Msa1438510:CDS
ACCCGAGAAATAAAATGATA+TGG 0.346874 tig0028570:-20034 None:intergenic
GCTTTCGGGTCTTGGAGTTG+GGG 0.348212 tig0028570:+19786 Msa1438510:CDS
CCAATACGTGGTTATTGATT+CGG 0.350961 tig0028570:+19258 Msa1438510:CDS
ATTTCAGTGGATGGAGCTAA+TGG 0.353637 tig0028570:+20189 Msa1438510:CDS
GCTAATGGGTATATGGGATT+TGG 0.357251 tig0028570:+20204 Msa1438510:CDS
GGGTTGTTGGGTCTTGGAAG+TGG 0.359095 tig0028570:+19583 Msa1438510:CDS
CTTTCGGGTCTTGGAGTTGG+GGG 0.359398 tig0028570:+19787 Msa1438510:CDS
GACACATGTTATGATTTAAA+CGG 0.361043 tig0028570:+19988 Msa1438510:CDS
GAGCCCGTGGGTTATGAATC+AGG 0.367672 tig0028570:-19744 None:intergenic
TTCGGGCAGTGACATTATTT+GGG 0.368954 tig0028570:+19276 Msa1438510:CDS
TAGTTATTGTTTAGTGAGTC+GGG 0.376613 tig0028570:+19654 Msa1438510:CDS
ATGATCACCGGAAATGTTAA+AGG 0.378209 tig0028570:-19056 None:intergenic
CAATACGTGGTTATTGATTC+GGG 0.383620 tig0028570:+19259 Msa1438510:CDS
GTCGGGTGTGGTTTCGGGTA+TGG 0.397951 tig0028570:+19180 Msa1438510:CDS
GGTTGTTGGGTCTTGGAAGT+GGG 0.398428 tig0028570:+19584 Msa1438510:CDS
TAAACGGGTTTGTGACGGTT+CGG 0.403107 tig0028570:+20004 Msa1438510:CDS
GCCGTTATGAGGTTTCTTAT+GGG 0.404335 tig0028570:+19440 Msa1438510:CDS
AGTCGGGGCACTGAATCATC+TGG 0.406241 tig0028570:+19670 Msa1438510:CDS
ACACATGTTATGATTTAAAC+GGG 0.407880 tig0028570:+19989 Msa1438510:CDS
GTTGGAGCAGCTGGGTTGTT+GGG 0.408232 tig0028570:+19571 Msa1438510:CDS
CTCCATTCGTGCATTGAAAC+GGG 0.418052 tig0028570:-19083 None:intergenic
GGGGTTGAGGGTTCCTATAT+CGG 0.418943 tig0028570:+19807 Msa1438510:CDS
TGTTGGAGCAGCTGGGTTGT+TGG 0.420595 tig0028570:+19570 Msa1438510:CDS
TCTCCATTCGTGCATTGAAA+CGG 0.421868 tig0028570:-19084 None:intergenic
TGCCCTTGAGACTGTTACAT+TGG 0.427294 tig0028570:+19489 Msa1438510:CDS
GGTATGAAACAGAGGAGTTC+GGG 0.428364 tig0028570:+19158 Msa1438510:CDS
AATACAAGCAACCATGGTAT+TGG 0.429601 tig0028570:+18769 None:intergenic
GGAGAGTATTTCGTAAGAAT+AGG 0.441186 tig0028570:+19214 Msa1438510:CDS
AGGAACCAGGGTATGTTTGT+TGG 0.444845 tig0028570:+19553 Msa1438510:CDS
CGGGTGTGGGCATAGGAACC+AGG 0.446262 tig0028570:+19540 Msa1438510:CDS
TTAGTTATTGTTTAGTGAGT+CGG 0.448984 tig0028570:+19653 Msa1438510:CDS
CGGCGAATCGCCGGTAGCGT+CGG 0.452344 tig0028570:+19136 Msa1438510:CDS
TATGAGGTTTCTTATGGGGA+TGG 0.454223 tig0028570:+19445 Msa1438510:CDS
GTGATCCGAAACGTGGCTAT+CGG 0.454470 tig0028570:+19520 Msa1438510:CDS
CGGTGCCTGTGGGTGCTTCG+TGG 0.456663 tig0028570:+19716 Msa1438510:CDS
GCCCTTGAGACTGTTACATT+GGG 0.458217 tig0028570:+19490 Msa1438510:CDS
CGAAACGTGGCTATCGGGTG+TGG 0.461598 tig0028570:+19526 Msa1438510:CDS
CCGAATCAATAACCACGTAT+TGG 0.463017 tig0028570:-19258 None:intergenic
GCCGTTGTGCGGCGAATCGC+CGG 0.464829 tig0028570:+19127 Msa1438510:CDS
GGGGATTCTTCATCTTATGC+TGG 0.467858 tig0028570:+19355 Msa1438510:CDS
GCTAGAATTTGGACGAGAAT+CGG 0.468088 tig0028570:+19696 Msa1438510:CDS
GGGTATGAAACAGAGGAGTT+CGG 0.473494 tig0028570:+19157 Msa1438510:CDS
TGATCCGAAACGTGGCTATC+GGG 0.475223 tig0028570:+19521 Msa1438510:CDS
TCACATGACTTAACATACAT+TGG 0.475622 tig0028570:-20229 None:intergenic
GTCGGATTGGTGATAACATT+GGG 0.477208 tig0028570:-19317 None:intergenic
GGCGAATCGCCGGTAGCGTC+GGG 0.478355 tig0028570:+19137 Msa1438510:CDS
ATGAGGTTTCTTATGGGGAT+GGG 0.479148 tig0028570:+19446 Msa1438510:CDS
GATGGAGCTAATGGGTATAT+GGG 0.482882 tig0028570:+20198 Msa1438510:CDS
GGTTGTTTGGTTGTATGAAA+AGG 0.483040 tig0028570:-18932 None:intergenic
GAGGTAGTGAGAAAGAGAAA+TGG 0.484309 tig0028570:-18806 None:intergenic
TGAAGGTGATGAGGTTAGAA+TGG 0.484969 tig0028570:-18834 None:intergenic
TTCATTCATGGACTCAGTGT+TGG 0.489078 tig0028570:-18972 None:intergenic
ACGTTGATGCGTTGGAAATG+AGG 0.491458 tig0028570:-18872 None:intergenic
TGAAGGGAGGTGCCGTTATG+AGG 0.492322 tig0028570:+19429 Msa1438510:CDS
TAAATGAATTGGGTGAGGGA+GGG 0.493214 tig0028570:+19845 Msa1438510:CDS
TGGCTATCGGGTGTGGGCAT+AGG 0.493489 tig0028570:+19533 Msa1438510:CDS
TTTCGGGTCTTGGAGTTGGG+GGG 0.497028 tig0028570:+19788 Msa1438510:CDS
GGTGCCTGTGGGTGCTTCGT+GGG 0.499303 tig0028570:+19717 Msa1438510:CDS
TGGTGATAACATTGGGTACA+TGG 0.501291 tig0028570:-19310 None:intergenic
TTTCAGTGGATGGAGCTAAT+GGG 0.503081 tig0028570:+20190 Msa1438510:CDS
GAAACAGAGGAGTTCGGGTC+GGG 0.503157 tig0028570:+19163 Msa1438510:CDS
TTTGTTTCACGTTGATGCGT+TGG 0.503219 tig0028570:-18880 None:intergenic
GGGATTGAAATTTCAGTGGA+TGG 0.503329 tig0028570:+20180 Msa1438510:CDS
CACATGACTTAACATACATT+GGG 0.503993 tig0028570:-20228 None:intergenic
CTAGCTGGAAGGGTCAATAT+AGG 0.505927 tig0028570:-20060 None:intergenic
TATTTCGTAAGAATAGGAGT+TGG 0.506635 tig0028570:+19220 Msa1438510:CDS
AGAGGAGTTCGGGTCGGGTG+TGG 0.509324 tig0028570:+19168 Msa1438510:CDS
GGCCAATTAGGTGGTCAGAC+TGG 0.513423 tig0028570:+19622 Msa1438510:CDS
CGTTGATGCGTTGGAAATGA+GGG 0.514491 tig0028570:-18871 None:intergenic
GGAGGGGTGGTCATGGACAC+CGG 0.514573 tig0028570:+19862 Msa1438510:CDS
CACACCCGATAGCCACGTTT+CGG 0.514707 tig0028570:-19525 None:intergenic
GGGTGAGGGAGGGGTGGTCA+TGG 0.515063 tig0028570:+19855 Msa1438510:CDS
TCGGTTAAATGAATTGGGTG+AGG 0.515639 tig0028570:+19840 Msa1438510:CDS
TTAAATGAATTGGGTGAGGG+AGG 0.517316 tig0028570:+19844 Msa1438510:CDS
GGAATTAAGAAGTTCCTAGC+TGG 0.517708 tig0028570:-20075 None:intergenic
GCATAAGATGAAGAATCCCC+CGG 0.520903 tig0028570:-19352 None:intergenic
GAGAAATAAAATGATATGGT+TGG 0.523017 tig0028570:-20030 None:intergenic
GGGATGGGTCCTATACTAAA+GGG 0.523693 tig0028570:+19461 Msa1438510:CDS
CCGTTATGAGGTTTCTTATG+GGG 0.528759 tig0028570:+19441 Msa1438510:CDS
TGTAGCCGTGTGGAGAATGC+AGG 0.531669 tig0028570:+19400 Msa1438510:CDS
CGGTTAAATGAATTGGGTGA+GGG 0.533268 tig0028570:+19841 Msa1438510:CDS
TCCCGAAATGCATTGTAAGC+CGG 0.534505 tig0028570:-19910 None:intergenic
TAACCTCGTCACGGCAGTGC+CGG 0.534510 tig0028570:-19881 None:intergenic
TTTCCCTGATTCATAACCCA+CGG 0.537283 tig0028570:+19740 Msa1438510:CDS
TGAATTGGGTGAGGGAGGGG+TGG 0.537828 tig0028570:+19849 Msa1438510:CDS
GGGGATGGGTCCTATACTAA+AGG 0.538590 tig0028570:+19460 Msa1438510:CDS
GGCAAGTGTCCCTTTAGTAT+AGG 0.540324 tig0028570:-19470 None:intergenic
CTTGAGACTGTTACATTGGG+AGG 0.541400 tig0028570:+19493 Msa1438510:CDS
TCGGGTATGGAGCAAGGAAG+TGG 0.542447 tig0028570:+19193 Msa1438510:CDS
ACCGGCGATTCGCCGCACAA+CGG 0.545210 tig0028570:-19128 None:intergenic
ACAAACCTACCCAAAACATC+AGG 0.549290 tig0028570:+19952 Msa1438510:CDS
TAGGAAACATCCAGCAAGAA+GGG 0.550149 tig0028570:+20160 Msa1438510:CDS
GAAACCCACGAAGCACCCAC+AGG 0.551071 tig0028570:-19721 None:intergenic
GGTCGGATTGGTGATAACAT+TGG 0.551981 tig0028570:-19318 None:intergenic
CTTAATTCCAGTGGATAGTG+TGG 0.552435 tig0028570:+20089 Msa1438510:CDS
TGAGGTTAGAATGGAAGTTG+AGG 0.556050 tig0028570:-18825 None:intergenic
GTGGTTTCGGGTATGGAGCA+AGG 0.556095 tig0028570:+19187 Msa1438510:CDS
TCTTATGCTGGTGTGTCTTG+CGG 0.561796 tig0028570:+19367 Msa1438510:CDS
TTAAGAAGTTCCTAGCTGGA+AGG 0.562288 tig0028570:-20071 None:intergenic
TTCCCTGATTCATAACCCAC+GGG 0.562661 tig0028570:+19741 Msa1438510:CDS
CTCCCAATGTAACAGTCTCA+AGG 0.565490 tig0028570:-19492 None:intergenic
ATGGAAAGTCCTGAAGAAGA+AGG 0.565827 tig0028570:-20135 None:intergenic
CTATATTGACCCTTCCAGCT+AGG 0.565963 tig0028570:+20061 Msa1438510:CDS
AATGGAGAGAGATTCTAAAA+GGG 0.567636 tig0028570:+19099 Msa1438510:CDS
CACCCGTTTCAATGCACGAA+TGG 0.568200 tig0028570:+19081 Msa1438510:CDS
ATTGGGTACATGGTTGACAC+TGG 0.572469 tig0028570:-19300 None:intergenic
GAGAATGCAGGGTGTCATGA+AGG 0.574020 tig0028570:+19412 Msa1438510:CDS
ATAGGAAACATCCAGCAAGA+AGG 0.574037 tig0028570:+20159 Msa1438510:CDS
AGCCCGTGGGTTATGAATCA+GGG 0.574204 tig0028570:-19743 None:intergenic
GTCGGGGCACTGAATCATCT+GGG 0.576511 tig0028570:+19671 Msa1438510:CDS
TTAATTCCAGTGGATAGTGT+GGG 0.577939 tig0028570:+20090 Msa1438510:CDS
AAAGTTCCCACACTATCCAC+TGG 0.580370 tig0028570:-20096 None:intergenic
ATTCTCCACACGGCTACATA+CGG 0.584742 tig0028570:-19395 None:intergenic
AATGCATTGTAAGCCGGCGT+AGG 0.585492 tig0028570:-19904 None:intergenic
AGAAGGGATTGAAATTTCAG+TGG 0.588453 tig0028570:+20176 Msa1438510:CDS
TGATTTAAACGGGTTTGTGA+CGG 0.594090 tig0028570:+19999 Msa1438510:CDS
TGGACGAGAATCGGTGCCTG+TGG 0.598034 tig0028570:+19705 Msa1438510:CDS
AAAGGGTCACCGCCGTTGTG+CGG 0.600828 tig0028570:+19116 Msa1438510:CDS
GAAACGGGTGAGATGATCAC+CGG 0.600997 tig0028570:-19068 None:intergenic
GGCGATTCGCCGCACAACGG+CGG 0.601835 tig0028570:-19125 None:intergenic
GAAACGTGGCTATCGGGTGT+GGG 0.602041 tig0028570:+19527 Msa1438510:CDS
GTATGTTTGTTGGAGCAGCT+GGG 0.602077 tig0028570:+19563 Msa1438510:CDS
TCCCAATGTAACAGTCTCAA+GGG 0.603717 tig0028570:-19491 None:intergenic
TGTTTCATACCCGACGCTAC+CGG 0.608322 tig0028570:-19146 None:intergenic
TAATTGGCCTACAAAAGACA+TGG 0.608647 tig0028570:-19608 None:intergenic
TAGGAACTTCTTAATTCCAG+TGG 0.615344 tig0028570:+20080 Msa1438510:CDS
ATGTTATCACCAATCCGACC+CGG 0.616285 tig0028570:+19321 Msa1438510:CDS
CCCCATAAGAAACCTCATAA+CGG 0.617736 tig0028570:-19441 None:intergenic
GTTGGAAATGAGGGTATGAA+AGG 0.621669 tig0028570:-18862 None:intergenic
TGAAACAGAGGAGTTCGGGT+CGG 0.622350 tig0028570:+19162 Msa1438510:CDS
TAAGAAGTTCCTAGCTGGAA+GGG 0.625100 tig0028570:-20070 None:intergenic
AGAATGCAGGGTGTCATGAA+GGG 0.627661 tig0028570:+19413 Msa1438510:CDS
CTGCTCCAACAAACATACCC+TGG 0.630612 tig0028570:-19558 None:intergenic
AGTTATTGTTTAGTGAGTCG+GGG 0.632837 tig0028570:+19655 Msa1438510:CDS
GACACCCTGCATTCTCCACA+CGG 0.638693 tig0028570:-19405 None:intergenic
ACACCGGCACTGCCGTGACG+AGG 0.644153 tig0028570:+19878 Msa1438510:CDS
GGACGAGAATCGGTGCCTGT+GGG 0.648473 tig0028570:+19706 Msa1438510:CDS
AAGAAACAAAACCAATACCA+TGG 0.658520 tig0028570:-18780 None:intergenic
CGGCGTAGGTAACCTCGTCA+CGG 0.668982 tig0028570:-19890 None:intergenic
CAATTAGGTGGTCAGACTGG+CGG 0.669034 tig0028570:+19625 Msa1438510:CDS
AGGAACTGTGATCCGAAACG+TGG 0.669373 tig0028570:+19513 Msa1438510:CDS
AAGGTTATGTGAAGGTGATG+AGG 0.669820 tig0028570:-18843 None:intergenic
GGGTGTGGGCATAGGAACCA+GGG 0.673291 tig0028570:+19541 Msa1438510:CDS
CTCCACACGGCTACATACGG+TGG 0.673617 tig0028570:-19392 None:intergenic
TAGCGTCGGGTATGAAACAG+AGG 0.673926 tig0028570:+19150 Msa1438510:CDS
ATGCAGGGTGTCATGAAGGG+AGG 0.676996 tig0028570:+19416 Msa1438510:CDS
TTCCACCGTATGTAGCCGTG+TGG 0.688346 tig0028570:+19390 Msa1438510:CDS
AATTGGCCTACAAAAGACAT+GGG 0.692119 tig0028570:-19607 None:intergenic
GGGTATGAAAGGTTATGTGA+AGG 0.694691 tig0028570:-18851 None:intergenic
GTAGCCGTGTGGAGAATGCA+GGG 0.695428 tig0028570:+19401 Msa1438510:CDS
CGTGACGAGGTTACCTACGC+CGG 0.710425 tig0028570:+19891 Msa1438510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCATATCATTTTATTTCT+CGG + tig0028570:20032-20051 Msa1438510:CDS 20.0%
!!! AACCATATCATTTTATTTCT+CGG + tig0028570:20032-20051 Msa1438510:CDS 20.0%
! TTAGTTATTGTTTAGTGAGT+CGG + tig0028570:19653-19672 Msa1438510:CDS 25.0%
!! TTTTTATTATATCGGGCTTT+CGG + tig0028570:19771-19790 Msa1438510:CDS 25.0%
!!! TGTTTTTCGGTTAAATGAAT+TGG + tig0028570:19834-19853 Msa1438510:CDS 25.0%
!!! GTTTTTCGGTTAAATGAATT+GGG + tig0028570:19835-19854 Msa1438510:CDS 25.0%
! ATCATAACATGTGTCAAAAA+TGG - tig0028570:19983-20002 None:intergenic 25.0%
! GACACATGTTATGATTTAAA+CGG + tig0028570:19988-20007 Msa1438510:CDS 25.0%
! ACACATGTTATGATTTAAAC+GGG + tig0028570:19989-20008 Msa1438510:CDS 25.0%
! GAGAAATAAAATGATATGGT+TGG - tig0028570:20033-20052 None:intergenic 25.0%
!!! ACCATATCATTTTATTTCTC+GGG + tig0028570:20033-20052 Msa1438510:CDS 25.0%
! TTAGTTATTGTTTAGTGAGT+CGG + tig0028570:19653-19672 Msa1438510:CDS 25.0%
!! TTTTTATTATATCGGGCTTT+CGG + tig0028570:19771-19790 Msa1438510:CDS 25.0%
!!! TGTTTTTCGGTTAAATGAAT+TGG + tig0028570:19834-19853 Msa1438510:CDS 25.0%
!!! GTTTTTCGGTTAAATGAATT+GGG + tig0028570:19835-19854 Msa1438510:CDS 25.0%
! ATCATAACATGTGTCAAAAA+TGG - tig0028570:19983-20002 None:intergenic 25.0%
! GACACATGTTATGATTTAAA+CGG + tig0028570:19988-20007 Msa1438510:CDS 25.0%
! ACACATGTTATGATTTAAAC+GGG + tig0028570:19989-20008 Msa1438510:CDS 25.0%
! GAGAAATAAAATGATATGGT+TGG - tig0028570:20033-20052 None:intergenic 25.0%
!!! ACCATATCATTTTATTTCTC+GGG + tig0028570:20033-20052 Msa1438510:CDS 25.0%
! TGAGTCTGATTTTTCATTCA+TGG - tig0028570:18987-19006 None:intergenic 30.0%
ATTTCTGCCTTTAACATTTC+CGG + tig0028570:19049-19068 Msa1438510:CDS 30.0%
! AATGGAGAGAGATTCTAAAA+GGG + tig0028570:19099-19118 Msa1438510:CDS 30.0%
TATTTCGTAAGAATAGGAGT+TGG + tig0028570:19220-19239 Msa1438510:CDS 30.0%
!!! ATAACCACGTATTGGTTTTT+TGG - tig0028570:19253-19272 None:intergenic 30.0%
TAGTTATTGTTTAGTGAGTC+GGG + tig0028570:19654-19673 Msa1438510:CDS 30.0%
! GCTCCGAGTTTTTATTATAT+CGG + tig0028570:19763-19782 Msa1438510:CDS 30.0%
! CTCCGAGTTTTTATTATATC+GGG + tig0028570:19764-19783 Msa1438510:CDS 30.0%
AGCCCGATATAATAAAAACT+CGG - tig0028570:19769-19788 None:intergenic 30.0%
! TTTTATTATATCGGGCTTTC+GGG + tig0028570:19772-19791 Msa1438510:CDS 30.0%
! CTATATCGGAAGATGTTTTT+CGG + tig0028570:19821-19840 Msa1438510:CDS 30.0%
ACCCGAGAAATAAAATGATA+TGG - tig0028570:20037-20056 None:intergenic 30.0%
!! ATATCATTTTATTTCTCGGG+TGG + tig0028570:20036-20055 Msa1438510:CDS 30.0%
!! TATCATTTTATTTCTCGGGT+GGG + tig0028570:20037-20056 Msa1438510:CDS 30.0%
! TGAGTCTGATTTTTCATTCA+TGG - tig0028570:18987-19006 None:intergenic 30.0%
ATTTCTGCCTTTAACATTTC+CGG + tig0028570:19049-19068 Msa1438510:CDS 30.0%
! AATGGAGAGAGATTCTAAAA+GGG + tig0028570:19099-19118 Msa1438510:CDS 30.0%
TATTTCGTAAGAATAGGAGT+TGG + tig0028570:19220-19239 Msa1438510:CDS 30.0%
!!! ATAACCACGTATTGGTTTTT+TGG - tig0028570:19253-19272 None:intergenic 30.0%
TAGTTATTGTTTAGTGAGTC+GGG + tig0028570:19654-19673 Msa1438510:CDS 30.0%
! GCTCCGAGTTTTTATTATAT+CGG + tig0028570:19763-19782 Msa1438510:CDS 30.0%
! CTCCGAGTTTTTATTATATC+GGG + tig0028570:19764-19783 Msa1438510:CDS 30.0%
AGCCCGATATAATAAAAACT+CGG - tig0028570:19769-19788 None:intergenic 30.0%
! TTTTATTATATCGGGCTTTC+GGG + tig0028570:19772-19791 Msa1438510:CDS 30.0%
! CTATATCGGAAGATGTTTTT+CGG + tig0028570:19821-19840 Msa1438510:CDS 30.0%
ACCCGAGAAATAAAATGATA+TGG - tig0028570:20037-20056 None:intergenic 30.0%
!! ATATCATTTTATTTCTCGGG+TGG + tig0028570:20036-20055 Msa1438510:CDS 30.0%
!! TATCATTTTATTTCTCGGGT+GGG + tig0028570:20037-20056 Msa1438510:CDS 30.0%
GGTTGTTTGGTTGTATGAAA+AGG - tig0028570:18935-18954 None:intergenic 35.0%
! TTGGATTTTCGGTTTTCTTG+GGG - tig0028570:18956-18975 None:intergenic 35.0%
! GTTGGATTTTCGGTTTTCTT+GGG - tig0028570:18957-18976 None:intergenic 35.0%
! TGTTGGATTTTCGGTTTTCT+TGG - tig0028570:18958-18977 None:intergenic 35.0%
GAAAAATCAGACTCAGTATC+AGG + tig0028570:18992-19011 Msa1438510:CDS 35.0%
ATGATCACCGGAAATGTTAA+AGG - tig0028570:19059-19078 None:intergenic 35.0%
GAATGGAGAGAGATTCTAAA+AGG + tig0028570:19098-19117 Msa1438510:CDS 35.0%
!! GGAGAGTATTTCGTAAGAAT+AGG + tig0028570:19214-19233 Msa1438510:CDS 35.0%
! CCAATACGTGGTTATTGATT+CGG + tig0028570:19258-19277 Msa1438510:CDS 35.0%
!! CAATACGTGGTTATTGATTC+GGG + tig0028570:19259-19278 Msa1438510:CDS 35.0%
! AATTGGCCTACAAAAGACAT+GGG - tig0028570:19610-19629 None:intergenic 35.0%
! TAATTGGCCTACAAAAGACA+TGG - tig0028570:19611-19630 None:intergenic 35.0%
! ATGTCTTTTGTAGGCCAATT+AGG + tig0028570:19610-19629 Msa1438510:CDS 35.0%
AGTTATTGTTTAGTGAGTCG+GGG + tig0028570:19655-19674 Msa1438510:CDS 35.0%
CGAAAAACATCTTCCGATAT+AGG - tig0028570:19823-19842 None:intergenic 35.0%
! ATGGATACTCCTGATGTTTT+GGG - tig0028570:19964-19983 None:intergenic 35.0%
! AATGGATACTCCTGATGTTT+TGG - tig0028570:19965-19984 None:intergenic 35.0%
! TGATTTAAACGGGTTTGTGA+CGG + tig0028570:19999-20018 Msa1438510:CDS 35.0%
TAGGAACTTCTTAATTCCAG+TGG + tig0028570:20080-20099 Msa1438510:CDS 35.0%
TTAATTCCAGTGGATAGTGT+GGG + tig0028570:20090-20109 Msa1438510:CDS 35.0%
AAATTTCAATCCCTTCTTGC+TGG - tig0028570:20173-20192 None:intergenic 35.0%
AGAAGGGATTGAAATTTCAG+TGG + tig0028570:20176-20195 Msa1438510:CDS 35.0%
GGTTGTTTGGTTGTATGAAA+AGG - tig0028570:18935-18954 None:intergenic 35.0%
! TTGGATTTTCGGTTTTCTTG+GGG - tig0028570:18956-18975 None:intergenic 35.0%
! GTTGGATTTTCGGTTTTCTT+GGG - tig0028570:18957-18976 None:intergenic 35.0%
! TGTTGGATTTTCGGTTTTCT+TGG - tig0028570:18958-18977 None:intergenic 35.0%
GAAAAATCAGACTCAGTATC+AGG + tig0028570:18992-19011 Msa1438510:CDS 35.0%
ATGATCACCGGAAATGTTAA+AGG - tig0028570:19059-19078 None:intergenic 35.0%
GAATGGAGAGAGATTCTAAA+AGG + tig0028570:19098-19117 Msa1438510:CDS 35.0%
!! GGAGAGTATTTCGTAAGAAT+AGG + tig0028570:19214-19233 Msa1438510:CDS 35.0%
! CCAATACGTGGTTATTGATT+CGG + tig0028570:19258-19277 Msa1438510:CDS 35.0%
!! CAATACGTGGTTATTGATTC+GGG + tig0028570:19259-19278 Msa1438510:CDS 35.0%
! AATTGGCCTACAAAAGACAT+GGG - tig0028570:19610-19629 None:intergenic 35.0%
! TAATTGGCCTACAAAAGACA+TGG - tig0028570:19611-19630 None:intergenic 35.0%
! ATGTCTTTTGTAGGCCAATT+AGG + tig0028570:19610-19629 Msa1438510:CDS 35.0%
AGTTATTGTTTAGTGAGTCG+GGG + tig0028570:19655-19674 Msa1438510:CDS 35.0%
CGAAAAACATCTTCCGATAT+AGG - tig0028570:19823-19842 None:intergenic 35.0%
! ATGGATACTCCTGATGTTTT+GGG - tig0028570:19964-19983 None:intergenic 35.0%
! AATGGATACTCCTGATGTTT+TGG - tig0028570:19965-19984 None:intergenic 35.0%
! TGATTTAAACGGGTTTGTGA+CGG + tig0028570:19999-20018 Msa1438510:CDS 35.0%
TAGGAACTTCTTAATTCCAG+TGG + tig0028570:20080-20099 Msa1438510:CDS 35.0%
TTAATTCCAGTGGATAGTGT+GGG + tig0028570:20090-20109 Msa1438510:CDS 35.0%
AAATTTCAATCCCTTCTTGC+TGG - tig0028570:20173-20192 None:intergenic 35.0%
AGAAGGGATTGAAATTTCAG+TGG + tig0028570:20176-20195 Msa1438510:CDS 35.0%
GAGGTAGTGAGAAAGAGAAA+TGG - tig0028570:18809-18828 None:intergenic 40.0%
TGAGGTTAGAATGGAAGTTG+AGG - tig0028570:18828-18847 None:intergenic 40.0%
TGAAGGTGATGAGGTTAGAA+TGG - tig0028570:18837-18856 None:intergenic 40.0%
AAGGTTATGTGAAGGTGATG+AGG - tig0028570:18846-18865 None:intergenic 40.0%
GGGTATGAAAGGTTATGTGA+AGG - tig0028570:18854-18873 None:intergenic 40.0%
! GTTGGAAATGAGGGTATGAA+AGG - tig0028570:18865-18884 None:intergenic 40.0%
TTTGTTTCACGTTGATGCGT+TGG - tig0028570:18883-18902 None:intergenic 40.0%
!! TGGACTCAGTGTTGGATTTT+CGG - tig0028570:18967-18986 None:intergenic 40.0%
TTCATTCATGGACTCAGTGT+TGG - tig0028570:18975-18994 None:intergenic 40.0%
TCTCCATTCGTGCATTGAAA+CGG - tig0028570:19087-19106 None:intergenic 40.0%
TCCACCAAAAAACCAATACG+TGG + tig0028570:19246-19265 Msa1438510:CDS 40.0%
!!! ACCACGTATTGGTTTTTTGG+TGG - tig0028570:19250-19269 None:intergenic 40.0%
CCGAATCAATAACCACGTAT+TGG - tig0028570:19261-19280 None:intergenic 40.0%
ATTCGGGCAGTGACATTATT+TGG + tig0028570:19275-19294 Msa1438510:CDS 40.0%
TTCGGGCAGTGACATTATTT+GGG + tig0028570:19276-19295 Msa1438510:CDS 40.0%
TGGTGATAACATTGGGTACA+TGG - tig0028570:19313-19332 None:intergenic 40.0%
!! GTCGGATTGGTGATAACATT+GGG - tig0028570:19320-19339 None:intergenic 40.0%
TGCCGTTATGAGGTTTCTTA+TGG + tig0028570:19439-19458 Msa1438510:CDS 40.0%
GCCGTTATGAGGTTTCTTAT+GGG + tig0028570:19440-19459 Msa1438510:CDS 40.0%
CCCCATAAGAAACCTCATAA+CGG - tig0028570:19444-19463 None:intergenic 40.0%
CCGTTATGAGGTTTCTTATG+GGG + tig0028570:19441-19460 Msa1438510:CDS 40.0%
TATGAGGTTTCTTATGGGGA+TGG + tig0028570:19445-19464 Msa1438510:CDS 40.0%
ATGAGGTTTCTTATGGGGAT+GGG + tig0028570:19446-19465 Msa1438510:CDS 40.0%
TCCCAATGTAACAGTCTCAA+GGG - tig0028570:19494-19513 None:intergenic 40.0%
! TCTTTTGTAGGCCAATTAGG+TGG + tig0028570:19613-19632 Msa1438510:CDS 40.0%
GCTAGAATTTGGACGAGAAT+CGG + tig0028570:19696-19715 Msa1438510:CDS 40.0%
TTTCCCTGATTCATAACCCA+CGG + tig0028570:19740-19759 Msa1438510:CDS 40.0%
TCGGTTAAATGAATTGGGTG+AGG + tig0028570:19840-19859 Msa1438510:CDS 40.0%
CGGTTAAATGAATTGGGTGA+GGG + tig0028570:19841-19860 Msa1438510:CDS 40.0%
TTAAATGAATTGGGTGAGGG+AGG + tig0028570:19844-19863 Msa1438510:CDS 40.0%
TAAATGAATTGGGTGAGGGA+GGG + tig0028570:19845-19864 Msa1438510:CDS 40.0%
ACAAACCTACCCAAAACATC+AGG + tig0028570:19952-19971 Msa1438510:CDS 40.0%
!! ATACTCCTGATGTTTTGGGT+AGG - tig0028570:19960-19979 None:intergenic 40.0%
TAAGAAGTTCCTAGCTGGAA+GGG - tig0028570:20073-20092 None:intergenic 40.0%
TTAAGAAGTTCCTAGCTGGA+AGG - tig0028570:20074-20093 None:intergenic 40.0%
GGAATTAAGAAGTTCCTAGC+TGG - tig0028570:20078-20097 None:intergenic 40.0%
CTTAATTCCAGTGGATAGTG+TGG + tig0028570:20089-20108 Msa1438510:CDS 40.0%
ATGGAAAGTCCTGAAGAAGA+AGG - tig0028570:20138-20157 None:intergenic 40.0%
TCTTCAGGACTTTCCATCAT+AGG + tig0028570:20141-20160 Msa1438510:CDS 40.0%
TTGCTGGATGTTTCCTATGA+TGG - tig0028570:20157-20176 None:intergenic 40.0%
ATAGGAAACATCCAGCAAGA+AGG + tig0028570:20159-20178 Msa1438510:CDS 40.0%
TAGGAAACATCCAGCAAGAA+GGG + tig0028570:20160-20179 Msa1438510:CDS 40.0%
GGGATTGAAATTTCAGTGGA+TGG + tig0028570:20180-20199 Msa1438510:CDS 40.0%
ATTTCAGTGGATGGAGCTAA+TGG + tig0028570:20189-20208 Msa1438510:CDS 40.0%
TTTCAGTGGATGGAGCTAAT+GGG + tig0028570:20190-20209 Msa1438510:CDS 40.0%
! GATGGAGCTAATGGGTATAT+GGG + tig0028570:20198-20217 Msa1438510:CDS 40.0%
! GCTAATGGGTATATGGGATT+TGG + tig0028570:20204-20223 Msa1438510:CDS 40.0%
GAGGTAGTGAGAAAGAGAAA+TGG - tig0028570:18809-18828 None:intergenic 40.0%
TGAGGTTAGAATGGAAGTTG+AGG - tig0028570:18828-18847 None:intergenic 40.0%
TGAAGGTGATGAGGTTAGAA+TGG - tig0028570:18837-18856 None:intergenic 40.0%
AAGGTTATGTGAAGGTGATG+AGG - tig0028570:18846-18865 None:intergenic 40.0%
GGGTATGAAAGGTTATGTGA+AGG - tig0028570:18854-18873 None:intergenic 40.0%
! GTTGGAAATGAGGGTATGAA+AGG - tig0028570:18865-18884 None:intergenic 40.0%
TTTGTTTCACGTTGATGCGT+TGG - tig0028570:18883-18902 None:intergenic 40.0%
!! TGGACTCAGTGTTGGATTTT+CGG - tig0028570:18967-18986 None:intergenic 40.0%
TTCATTCATGGACTCAGTGT+TGG - tig0028570:18975-18994 None:intergenic 40.0%
TCTCCATTCGTGCATTGAAA+CGG - tig0028570:19087-19106 None:intergenic 40.0%
TCCACCAAAAAACCAATACG+TGG + tig0028570:19246-19265 Msa1438510:CDS 40.0%
!!! ACCACGTATTGGTTTTTTGG+TGG - tig0028570:19250-19269 None:intergenic 40.0%
CCGAATCAATAACCACGTAT+TGG - tig0028570:19261-19280 None:intergenic 40.0%
ATTCGGGCAGTGACATTATT+TGG + tig0028570:19275-19294 Msa1438510:CDS 40.0%
TTCGGGCAGTGACATTATTT+GGG + tig0028570:19276-19295 Msa1438510:CDS 40.0%
TGGTGATAACATTGGGTACA+TGG - tig0028570:19313-19332 None:intergenic 40.0%
!! GTCGGATTGGTGATAACATT+GGG - tig0028570:19320-19339 None:intergenic 40.0%
TGCCGTTATGAGGTTTCTTA+TGG + tig0028570:19439-19458 Msa1438510:CDS 40.0%
GCCGTTATGAGGTTTCTTAT+GGG + tig0028570:19440-19459 Msa1438510:CDS 40.0%
CCCCATAAGAAACCTCATAA+CGG - tig0028570:19444-19463 None:intergenic 40.0%
CCGTTATGAGGTTTCTTATG+GGG + tig0028570:19441-19460 Msa1438510:CDS 40.0%
TATGAGGTTTCTTATGGGGA+TGG + tig0028570:19445-19464 Msa1438510:CDS 40.0%
ATGAGGTTTCTTATGGGGAT+GGG + tig0028570:19446-19465 Msa1438510:CDS 40.0%
TCCCAATGTAACAGTCTCAA+GGG - tig0028570:19494-19513 None:intergenic 40.0%
! TCTTTTGTAGGCCAATTAGG+TGG + tig0028570:19613-19632 Msa1438510:CDS 40.0%
GCTAGAATTTGGACGAGAAT+CGG + tig0028570:19696-19715 Msa1438510:CDS 40.0%
TTTCCCTGATTCATAACCCA+CGG + tig0028570:19740-19759 Msa1438510:CDS 40.0%
TCGGTTAAATGAATTGGGTG+AGG + tig0028570:19840-19859 Msa1438510:CDS 40.0%
CGGTTAAATGAATTGGGTGA+GGG + tig0028570:19841-19860 Msa1438510:CDS 40.0%
TTAAATGAATTGGGTGAGGG+AGG + tig0028570:19844-19863 Msa1438510:CDS 40.0%
TAAATGAATTGGGTGAGGGA+GGG + tig0028570:19845-19864 Msa1438510:CDS 40.0%
ACAAACCTACCCAAAACATC+AGG + tig0028570:19952-19971 Msa1438510:CDS 40.0%
!! ATACTCCTGATGTTTTGGGT+AGG - tig0028570:19960-19979 None:intergenic 40.0%
TAAGAAGTTCCTAGCTGGAA+GGG - tig0028570:20073-20092 None:intergenic 40.0%
TTAAGAAGTTCCTAGCTGGA+AGG - tig0028570:20074-20093 None:intergenic 40.0%
GGAATTAAGAAGTTCCTAGC+TGG - tig0028570:20078-20097 None:intergenic 40.0%
CTTAATTCCAGTGGATAGTG+TGG + tig0028570:20089-20108 Msa1438510:CDS 40.0%
ATGGAAAGTCCTGAAGAAGA+AGG - tig0028570:20138-20157 None:intergenic 40.0%
TCTTCAGGACTTTCCATCAT+AGG + tig0028570:20141-20160 Msa1438510:CDS 40.0%
TTGCTGGATGTTTCCTATGA+TGG - tig0028570:20157-20176 None:intergenic 40.0%
ATAGGAAACATCCAGCAAGA+AGG + tig0028570:20159-20178 Msa1438510:CDS 40.0%
TAGGAAACATCCAGCAAGAA+GGG + tig0028570:20160-20179 Msa1438510:CDS 40.0%
GGGATTGAAATTTCAGTGGA+TGG + tig0028570:20180-20199 Msa1438510:CDS 40.0%
ATTTCAGTGGATGGAGCTAA+TGG + tig0028570:20189-20208 Msa1438510:CDS 40.0%
TTTCAGTGGATGGAGCTAAT+GGG + tig0028570:20190-20209 Msa1438510:CDS 40.0%
! GATGGAGCTAATGGGTATAT+GGG + tig0028570:20198-20217 Msa1438510:CDS 40.0%
! GCTAATGGGTATATGGGATT+TGG + tig0028570:20204-20223 Msa1438510:CDS 40.0%
CGTTGATGCGTTGGAAATGA+GGG - tig0028570:18874-18893 None:intergenic 45.0%
ACGTTGATGCGTTGGAAATG+AGG - tig0028570:18875-18894 None:intergenic 45.0%
! TCGGTTTTCTTGGGGTTGTT+TGG - tig0028570:18948-18967 None:intergenic 45.0%
CTCCATTCGTGCATTGAAAC+GGG - tig0028570:19086-19105 None:intergenic 45.0%
GGGTATGAAACAGAGGAGTT+CGG + tig0028570:19157-19176 Msa1438510:CDS 45.0%
GGTATGAAACAGAGGAGTTC+GGG + tig0028570:19158-19177 Msa1438510:CDS 45.0%
ATTGGGTACATGGTTGACAC+TGG - tig0028570:19303-19322 None:intergenic 45.0%
!! GGTCGGATTGGTGATAACAT+TGG - tig0028570:19321-19340 None:intergenic 45.0%
ATGTTATCACCAATCCGACC+CGG + tig0028570:19321-19340 Msa1438510:CDS 45.0%
CATAAGATGAAGAATCCCCC+GGG - tig0028570:19354-19373 None:intergenic 45.0%
GCATAAGATGAAGAATCCCC+CGG - tig0028570:19355-19374 None:intergenic 45.0%
GGGGATTCTTCATCTTATGC+TGG + tig0028570:19355-19374 Msa1438510:CDS 45.0%
TCTTATGCTGGTGTGTCTTG+CGG + tig0028570:19367-19386 Msa1438510:CDS 45.0%
ATTCTCCACACGGCTACATA+CGG - tig0028570:19398-19417 None:intergenic 45.0%
! AGAATGCAGGGTGTCATGAA+GGG + tig0028570:19413-19432 Msa1438510:CDS 45.0%
GGGATGGGTCCTATACTAAA+GGG + tig0028570:19461-19480 Msa1438510:CDS 45.0%
GGCAAGTGTCCCTTTAGTAT+AGG - tig0028570:19473-19492 None:intergenic 45.0%
TGCCCTTGAGACTGTTACAT+TGG + tig0028570:19489-19508 Msa1438510:CDS 45.0%
GCCCTTGAGACTGTTACATT+GGG + tig0028570:19490-19509 Msa1438510:CDS 45.0%
CTCCCAATGTAACAGTCTCA+AGG - tig0028570:19495-19514 None:intergenic 45.0%
CTTGAGACTGTTACATTGGG+AGG + tig0028570:19493-19512 Msa1438510:CDS 45.0%
AGGAACCAGGGTATGTTTGT+TGG + tig0028570:19553-19572 Msa1438510:CDS 45.0%
! GTATGTTTGTTGGAGCAGCT+GGG + tig0028570:19563-19582 Msa1438510:CDS 45.0%
TCATCTGGGTCGCTAGAATT+TGG + tig0028570:19685-19704 Msa1438510:CDS 45.0%
TTCCCTGATTCATAACCCAC+GGG + tig0028570:19741-19760 Msa1438510:CDS 45.0%
AATAAAAACTCGGAGCCCGT+GGG - tig0028570:19759-19778 None:intergenic 45.0%
TAATAAAAACTCGGAGCCCG+TGG - tig0028570:19760-19779 None:intergenic 45.0%
AAATGAATTGGGTGAGGGAG+GGG + tig0028570:19846-19865 Msa1438510:CDS 45.0%
TCCCGAAATGCATTGTAAGC+CGG - tig0028570:19913-19932 None:intergenic 45.0%
! TAAACGGGTTTGTGACGGTT+CGG + tig0028570:20004-20023 Msa1438510:CDS 45.0%
CTAGCTGGAAGGGTCAATAT+AGG - tig0028570:20063-20082 None:intergenic 45.0%
CTATATTGACCCTTCCAGCT+AGG + tig0028570:20061-20080 Msa1438510:CDS 45.0%
AAAGTTCCCACACTATCCAC+TGG - tig0028570:20099-20118 None:intergenic 45.0%
GCATTTGCTCCTTCTTCTTC+AGG + tig0028570:20126-20145 Msa1438510:CDS 45.0%
! GGATGGAGCTAATGGGTATA+TGG + tig0028570:20197-20216 Msa1438510:CDS 45.0%
CGTTGATGCGTTGGAAATGA+GGG - tig0028570:18874-18893 None:intergenic 45.0%
ACGTTGATGCGTTGGAAATG+AGG - tig0028570:18875-18894 None:intergenic 45.0%
! TCGGTTTTCTTGGGGTTGTT+TGG - tig0028570:18948-18967 None:intergenic 45.0%
CTCCATTCGTGCATTGAAAC+GGG - tig0028570:19086-19105 None:intergenic 45.0%
GGGTATGAAACAGAGGAGTT+CGG + tig0028570:19157-19176 Msa1438510:CDS 45.0%
GGTATGAAACAGAGGAGTTC+GGG + tig0028570:19158-19177 Msa1438510:CDS 45.0%
ATTGGGTACATGGTTGACAC+TGG - tig0028570:19303-19322 None:intergenic 45.0%
!! GGTCGGATTGGTGATAACAT+TGG - tig0028570:19321-19340 None:intergenic 45.0%
ATGTTATCACCAATCCGACC+CGG + tig0028570:19321-19340 Msa1438510:CDS 45.0%
CATAAGATGAAGAATCCCCC+GGG - tig0028570:19354-19373 None:intergenic 45.0%
GCATAAGATGAAGAATCCCC+CGG - tig0028570:19355-19374 None:intergenic 45.0%
GGGGATTCTTCATCTTATGC+TGG + tig0028570:19355-19374 Msa1438510:CDS 45.0%
TCTTATGCTGGTGTGTCTTG+CGG + tig0028570:19367-19386 Msa1438510:CDS 45.0%
ATTCTCCACACGGCTACATA+CGG - tig0028570:19398-19417 None:intergenic 45.0%
! AGAATGCAGGGTGTCATGAA+GGG + tig0028570:19413-19432 Msa1438510:CDS 45.0%
GGGATGGGTCCTATACTAAA+GGG + tig0028570:19461-19480 Msa1438510:CDS 45.0%
GGCAAGTGTCCCTTTAGTAT+AGG - tig0028570:19473-19492 None:intergenic 45.0%
TGCCCTTGAGACTGTTACAT+TGG + tig0028570:19489-19508 Msa1438510:CDS 45.0%
GCCCTTGAGACTGTTACATT+GGG + tig0028570:19490-19509 Msa1438510:CDS 45.0%
CTCCCAATGTAACAGTCTCA+AGG - tig0028570:19495-19514 None:intergenic 45.0%
CTTGAGACTGTTACATTGGG+AGG + tig0028570:19493-19512 Msa1438510:CDS 45.0%
AGGAACCAGGGTATGTTTGT+TGG + tig0028570:19553-19572 Msa1438510:CDS 45.0%
! GTATGTTTGTTGGAGCAGCT+GGG + tig0028570:19563-19582 Msa1438510:CDS 45.0%
TCATCTGGGTCGCTAGAATT+TGG + tig0028570:19685-19704 Msa1438510:CDS 45.0%
TTCCCTGATTCATAACCCAC+GGG + tig0028570:19741-19760 Msa1438510:CDS 45.0%
AATAAAAACTCGGAGCCCGT+GGG - tig0028570:19759-19778 None:intergenic 45.0%
TAATAAAAACTCGGAGCCCG+TGG - tig0028570:19760-19779 None:intergenic 45.0%
AAATGAATTGGGTGAGGGAG+GGG + tig0028570:19846-19865 Msa1438510:CDS 45.0%
TCCCGAAATGCATTGTAAGC+CGG - tig0028570:19913-19932 None:intergenic 45.0%
! TAAACGGGTTTGTGACGGTT+CGG + tig0028570:20004-20023 Msa1438510:CDS 45.0%
CTAGCTGGAAGGGTCAATAT+AGG - tig0028570:20063-20082 None:intergenic 45.0%
CTATATTGACCCTTCCAGCT+AGG + tig0028570:20061-20080 Msa1438510:CDS 45.0%
AAAGTTCCCACACTATCCAC+TGG - tig0028570:20099-20118 None:intergenic 45.0%
GCATTTGCTCCTTCTTCTTC+AGG + tig0028570:20126-20145 Msa1438510:CDS 45.0%
! GGATGGAGCTAATGGGTATA+TGG + tig0028570:20197-20216 Msa1438510:CDS 45.0%
GAAACGGGTGAGATGATCAC+CGG - tig0028570:19071-19090 None:intergenic 50.0%
CACCCGTTTCAATGCACGAA+TGG + tig0028570:19081-19100 Msa1438510:CDS 50.0%
TGTTTCATACCCGACGCTAC+CGG - tig0028570:19149-19168 None:intergenic 50.0%
! TAGCGTCGGGTATGAAACAG+AGG + tig0028570:19150-19169 Msa1438510:CDS 50.0%
TGAAACAGAGGAGTTCGGGT+CGG + tig0028570:19162-19181 Msa1438510:CDS 50.0%
GGTTAAAAACCGGGTCGGAT+TGG - tig0028570:19333-19352 None:intergenic 50.0%
! ATCCGACCCGGTTTTTAACC+CGG + tig0028570:19333-19352 Msa1438510:CDS 50.0%
AATCCCCCGGGTTAAAAACC+GGG - tig0028570:19342-19361 None:intergenic 50.0%
GAATCCCCCGGGTTAAAAAC+CGG - tig0028570:19343-19362 None:intergenic 50.0%
! GAGAATGCAGGGTGTCATGA+AGG + tig0028570:19412-19431 Msa1438510:CDS 50.0%
GGGGATGGGTCCTATACTAA+AGG + tig0028570:19460-19479 Msa1438510:CDS 50.0%
AGGAACTGTGATCCGAAACG+TGG + tig0028570:19513-19532 Msa1438510:CDS 50.0%
GTGATCCGAAACGTGGCTAT+CGG + tig0028570:19520-19539 Msa1438510:CDS 50.0%
TGATCCGAAACGTGGCTATC+GGG + tig0028570:19521-19540 Msa1438510:CDS 50.0%
CTGCTCCAACAAACATACCC+TGG - tig0028570:19561-19580 None:intergenic 50.0%
! GGTATGTTTGTTGGAGCAGC+TGG + tig0028570:19562-19581 Msa1438510:CDS 50.0%
GGTTGTTGGGTCTTGGAAGT+GGG + tig0028570:19584-19603 Msa1438510:CDS 50.0%
! AGTGGGCCCATGTCTTTTGT+AGG + tig0028570:19601-19620 Msa1438510:CDS 50.0%
CAATTAGGTGGTCAGACTGG+CGG + tig0028570:19625-19644 Msa1438510:CDS 50.0%
! AGCCCGTGGGTTATGAATCA+GGG - tig0028570:19746-19765 None:intergenic 50.0%
! TATATCGGGCTTTCGGGTCT+TGG + tig0028570:19778-19797 Msa1438510:CDS 50.0%
GGGGTTGAGGGTTCCTATAT+CGG + tig0028570:19807-19826 Msa1438510:CDS 50.0%
AATGCATTGTAAGCCGGCGT+AGG - tig0028570:19907-19926 None:intergenic 50.0%
!! CGCCGGCTTACAATGCATTT+CGG + tig0028570:19908-19927 Msa1438510:CDS 50.0%
! GCCGGCTTACAATGCATTTC+GGG + tig0028570:19909-19928 Msa1438510:CDS 50.0%
! AAACGGGTTTGTGACGGTTC+GGG + tig0028570:20005-20024 Msa1438510:CDS 50.0%
GAAACGGGTGAGATGATCAC+CGG - tig0028570:19071-19090 None:intergenic 50.0%
CACCCGTTTCAATGCACGAA+TGG + tig0028570:19081-19100 Msa1438510:CDS 50.0%
TGTTTCATACCCGACGCTAC+CGG - tig0028570:19149-19168 None:intergenic 50.0%
! TAGCGTCGGGTATGAAACAG+AGG + tig0028570:19150-19169 Msa1438510:CDS 50.0%
TGAAACAGAGGAGTTCGGGT+CGG + tig0028570:19162-19181 Msa1438510:CDS 50.0%
GGTTAAAAACCGGGTCGGAT+TGG - tig0028570:19333-19352 None:intergenic 50.0%
! ATCCGACCCGGTTTTTAACC+CGG + tig0028570:19333-19352 Msa1438510:CDS 50.0%
AATCCCCCGGGTTAAAAACC+GGG - tig0028570:19342-19361 None:intergenic 50.0%
GAATCCCCCGGGTTAAAAAC+CGG - tig0028570:19343-19362 None:intergenic 50.0%
! GAGAATGCAGGGTGTCATGA+AGG + tig0028570:19412-19431 Msa1438510:CDS 50.0%
GGGGATGGGTCCTATACTAA+AGG + tig0028570:19460-19479 Msa1438510:CDS 50.0%
AGGAACTGTGATCCGAAACG+TGG + tig0028570:19513-19532 Msa1438510:CDS 50.0%
GTGATCCGAAACGTGGCTAT+CGG + tig0028570:19520-19539 Msa1438510:CDS 50.0%
TGATCCGAAACGTGGCTATC+GGG + tig0028570:19521-19540 Msa1438510:CDS 50.0%
CTGCTCCAACAAACATACCC+TGG - tig0028570:19561-19580 None:intergenic 50.0%
! GGTATGTTTGTTGGAGCAGC+TGG + tig0028570:19562-19581 Msa1438510:CDS 50.0%
GGTTGTTGGGTCTTGGAAGT+GGG + tig0028570:19584-19603 Msa1438510:CDS 50.0%
! AGTGGGCCCATGTCTTTTGT+AGG + tig0028570:19601-19620 Msa1438510:CDS 50.0%
CAATTAGGTGGTCAGACTGG+CGG + tig0028570:19625-19644 Msa1438510:CDS 50.0%
! AGCCCGTGGGTTATGAATCA+GGG - tig0028570:19746-19765 None:intergenic 50.0%
! TATATCGGGCTTTCGGGTCT+TGG + tig0028570:19778-19797 Msa1438510:CDS 50.0%
GGGGTTGAGGGTTCCTATAT+CGG + tig0028570:19807-19826 Msa1438510:CDS 50.0%
AATGCATTGTAAGCCGGCGT+AGG - tig0028570:19907-19926 None:intergenic 50.0%
!! CGCCGGCTTACAATGCATTT+CGG + tig0028570:19908-19927 Msa1438510:CDS 50.0%
! GCCGGCTTACAATGCATTTC+GGG + tig0028570:19909-19928 Msa1438510:CDS 50.0%
! AAACGGGTTTGTGACGGTTC+GGG + tig0028570:20005-20024 Msa1438510:CDS 50.0%
GAAACAGAGGAGTTCGGGTC+GGG + tig0028570:19163-19182 Msa1438510:CDS 55.0%
! GTGGTTTCGGGTATGGAGCA+AGG + tig0028570:19187-19206 Msa1438510:CDS 55.0%
TCGGGTATGGAGCAAGGAAG+TGG + tig0028570:19193-19212 Msa1438510:CDS 55.0%
! TCCGACCCGGTTTTTAACCC+GGG + tig0028570:19334-19353 Msa1438510:CDS 55.0%
TTCCACCGTATGTAGCCGTG+TGG + tig0028570:19390-19409 Msa1438510:CDS 55.0%
TGTAGCCGTGTGGAGAATGC+AGG + tig0028570:19400-19419 Msa1438510:CDS 55.0%
GTAGCCGTGTGGAGAATGCA+GGG + tig0028570:19401-19420 Msa1438510:CDS 55.0%
GACACCCTGCATTCTCCACA+CGG - tig0028570:19408-19427 None:intergenic 55.0%
! ATGCAGGGTGTCATGAAGGG+AGG + tig0028570:19416-19435 Msa1438510:CDS 55.0%
!! TGAAGGGAGGTGCCGTTATG+AGG + tig0028570:19429-19448 Msa1438510:CDS 55.0%
CACACCCGATAGCCACGTTT+CGG - tig0028570:19528-19547 None:intergenic 55.0%
GAAACGTGGCTATCGGGTGT+GGG + tig0028570:19527-19546 Msa1438510:CDS 55.0%
TGTTGGAGCAGCTGGGTTGT+TGG + tig0028570:19570-19589 Msa1438510:CDS 55.0%
GTTGGAGCAGCTGGGTTGTT+GGG + tig0028570:19571-19590 Msa1438510:CDS 55.0%
GGGTTGTTGGGTCTTGGAAG+TGG + tig0028570:19583-19602 Msa1438510:CDS 55.0%
GGCCAATTAGGTGGTCAGAC+TGG + tig0028570:19622-19641 Msa1438510:CDS 55.0%
CGCCAGTCTGACCACCTAAT+TGG - tig0028570:19627-19646 None:intergenic 55.0%
!! AGTCGGGGCACTGAATCATC+TGG + tig0028570:19670-19689 Msa1438510:CDS 55.0%
!! GTCGGGGCACTGAATCATCT+GGG + tig0028570:19671-19690 Msa1438510:CDS 55.0%
! GAGCCCGTGGGTTATGAATC+AGG - tig0028570:19747-19766 None:intergenic 55.0%
! GGCTTTCGGGTCTTGGAGTT+GGG + tig0028570:19785-19804 Msa1438510:CDS 55.0%
! GCTTTCGGGTCTTGGAGTTG+GGG + tig0028570:19786-19805 Msa1438510:CDS 55.0%
! CTTTCGGGTCTTGGAGTTGG+GGG + tig0028570:19787-19806 Msa1438510:CDS 55.0%
! TTTCGGGTCTTGGAGTTGGG+GGG + tig0028570:19788-19807 Msa1438510:CDS 55.0%
TCTTGGAGTTGGGGGGTTGA+GGG + tig0028570:19795-19814 Msa1438510:CDS 55.0%
GAAACAGAGGAGTTCGGGTC+GGG + tig0028570:19163-19182 Msa1438510:CDS 55.0%
! GTGGTTTCGGGTATGGAGCA+AGG + tig0028570:19187-19206 Msa1438510:CDS 55.0%
TCGGGTATGGAGCAAGGAAG+TGG + tig0028570:19193-19212 Msa1438510:CDS 55.0%
! TCCGACCCGGTTTTTAACCC+GGG + tig0028570:19334-19353 Msa1438510:CDS 55.0%
TTCCACCGTATGTAGCCGTG+TGG + tig0028570:19390-19409 Msa1438510:CDS 55.0%
TGTAGCCGTGTGGAGAATGC+AGG + tig0028570:19400-19419 Msa1438510:CDS 55.0%
GTAGCCGTGTGGAGAATGCA+GGG + tig0028570:19401-19420 Msa1438510:CDS 55.0%
GACACCCTGCATTCTCCACA+CGG - tig0028570:19408-19427 None:intergenic 55.0%
! ATGCAGGGTGTCATGAAGGG+AGG + tig0028570:19416-19435 Msa1438510:CDS 55.0%
!! TGAAGGGAGGTGCCGTTATG+AGG + tig0028570:19429-19448 Msa1438510:CDS 55.0%
CACACCCGATAGCCACGTTT+CGG - tig0028570:19528-19547 None:intergenic 55.0%
GAAACGTGGCTATCGGGTGT+GGG + tig0028570:19527-19546 Msa1438510:CDS 55.0%
TGTTGGAGCAGCTGGGTTGT+TGG + tig0028570:19570-19589 Msa1438510:CDS 55.0%
GTTGGAGCAGCTGGGTTGTT+GGG + tig0028570:19571-19590 Msa1438510:CDS 55.0%
GGGTTGTTGGGTCTTGGAAG+TGG + tig0028570:19583-19602 Msa1438510:CDS 55.0%
GGCCAATTAGGTGGTCAGAC+TGG + tig0028570:19622-19641 Msa1438510:CDS 55.0%
CGCCAGTCTGACCACCTAAT+TGG - tig0028570:19627-19646 None:intergenic 55.0%
!! AGTCGGGGCACTGAATCATC+TGG + tig0028570:19670-19689 Msa1438510:CDS 55.0%
!! GTCGGGGCACTGAATCATCT+GGG + tig0028570:19671-19690 Msa1438510:CDS 55.0%
! GAGCCCGTGGGTTATGAATC+AGG - tig0028570:19747-19766 None:intergenic 55.0%
! GGCTTTCGGGTCTTGGAGTT+GGG + tig0028570:19785-19804 Msa1438510:CDS 55.0%
! GCTTTCGGGTCTTGGAGTTG+GGG + tig0028570:19786-19805 Msa1438510:CDS 55.0%
! CTTTCGGGTCTTGGAGTTGG+GGG + tig0028570:19787-19806 Msa1438510:CDS 55.0%
! TTTCGGGTCTTGGAGTTGGG+GGG + tig0028570:19788-19807 Msa1438510:CDS 55.0%
TCTTGGAGTTGGGGGGTTGA+GGG + tig0028570:19795-19814 Msa1438510:CDS 55.0%
AAAGGGTCACCGCCGTTGTG+CGG + tig0028570:19116-19135 Msa1438510:CDS 60.0%
GTTCGGGTCGGGTGTGGTTT+CGG + tig0028570:19174-19193 Msa1438510:CDS 60.0%
TTCGGGTCGGGTGTGGTTTC+GGG + tig0028570:19175-19194 Msa1438510:CDS 60.0%
! GTCGGGTGTGGTTTCGGGTA+TGG + tig0028570:19180-19199 Msa1438510:CDS 60.0%
CCCCGGGTTAAAAACCGGGT+CGG - tig0028570:19338-19357 None:intergenic 60.0%
! CCGACCCGGTTTTTAACCCG+GGG + tig0028570:19335-19354 Msa1438510:CDS 60.0%
! CGACCCGGTTTTTAACCCGG+GGG + tig0028570:19336-19355 Msa1438510:CDS 60.0%
CTCCACACGGCTACATACGG+TGG - tig0028570:19395-19414 None:intergenic 60.0%
CGAAACGTGGCTATCGGGTG+TGG + tig0028570:19526-19545 Msa1438510:CDS 60.0%
TGGCTATCGGGTGTGGGCAT+AGG + tig0028570:19533-19552 Msa1438510:CDS 60.0%
GGGTGTGGGCATAGGAACCA+GGG + tig0028570:19541-19560 Msa1438510:CDS 60.0%
GCAGCTGGGTTGTTGGGTCT+TGG + tig0028570:19577-19596 Msa1438510:CDS 60.0%
! TGGACGAGAATCGGTGCCTG+TGG + tig0028570:19705-19724 Msa1438510:CDS 60.0%
! GGACGAGAATCGGTGCCTGT+GGG + tig0028570:19706-19725 Msa1438510:CDS 60.0%
! GAAACCCACGAAGCACCCAC+AGG - tig0028570:19724-19743 None:intergenic 60.0%
! GGGCTTTCGGGTCTTGGAGT+TGG + tig0028570:19784-19803 Msa1438510:CDS 60.0%
GTCTTGGAGTTGGGGGGTTG+AGG + tig0028570:19794-19813 Msa1438510:CDS 60.0%
TGAATTGGGTGAGGGAGGGG+TGG + tig0028570:19849-19868 Msa1438510:CDS 60.0%
TAACCTCGTCACGGCAGTGC+CGG - tig0028570:19884-19903 None:intergenic 60.0%
CGGCGTAGGTAACCTCGTCA+CGG - tig0028570:19893-19912 None:intergenic 60.0%
CGTGACGAGGTTACCTACGC+CGG + tig0028570:19891-19910 Msa1438510:CDS 60.0%
AAAGGGTCACCGCCGTTGTG+CGG + tig0028570:19116-19135 Msa1438510:CDS 60.0%
GTTCGGGTCGGGTGTGGTTT+CGG + tig0028570:19174-19193 Msa1438510:CDS 60.0%
TTCGGGTCGGGTGTGGTTTC+GGG + tig0028570:19175-19194 Msa1438510:CDS 60.0%
! GTCGGGTGTGGTTTCGGGTA+TGG + tig0028570:19180-19199 Msa1438510:CDS 60.0%
CCCCGGGTTAAAAACCGGGT+CGG - tig0028570:19338-19357 None:intergenic 60.0%
! CCGACCCGGTTTTTAACCCG+GGG + tig0028570:19335-19354 Msa1438510:CDS 60.0%
! CGACCCGGTTTTTAACCCGG+GGG + tig0028570:19336-19355 Msa1438510:CDS 60.0%
CTCCACACGGCTACATACGG+TGG - tig0028570:19395-19414 None:intergenic 60.0%
CGAAACGTGGCTATCGGGTG+TGG + tig0028570:19526-19545 Msa1438510:CDS 60.0%
TGGCTATCGGGTGTGGGCAT+AGG + tig0028570:19533-19552 Msa1438510:CDS 60.0%
GGGTGTGGGCATAGGAACCA+GGG + tig0028570:19541-19560 Msa1438510:CDS 60.0%
GCAGCTGGGTTGTTGGGTCT+TGG + tig0028570:19577-19596 Msa1438510:CDS 60.0%
! TGGACGAGAATCGGTGCCTG+TGG + tig0028570:19705-19724 Msa1438510:CDS 60.0%
! GGACGAGAATCGGTGCCTGT+GGG + tig0028570:19706-19725 Msa1438510:CDS 60.0%
! GAAACCCACGAAGCACCCAC+AGG - tig0028570:19724-19743 None:intergenic 60.0%
! GGGCTTTCGGGTCTTGGAGT+TGG + tig0028570:19784-19803 Msa1438510:CDS 60.0%
GTCTTGGAGTTGGGGGGTTG+AGG + tig0028570:19794-19813 Msa1438510:CDS 60.0%
TGAATTGGGTGAGGGAGGGG+TGG + tig0028570:19849-19868 Msa1438510:CDS 60.0%
TAACCTCGTCACGGCAGTGC+CGG - tig0028570:19884-19903 None:intergenic 60.0%
CGGCGTAGGTAACCTCGTCA+CGG - tig0028570:19893-19912 None:intergenic 60.0%
CGTGACGAGGTTACCTACGC+CGG + tig0028570:19891-19910 Msa1438510:CDS 60.0%
ACCGGCGATTCGCCGCACAA+CGG - tig0028570:19131-19150 None:intergenic 65.0%
AGAGGAGTTCGGGTCGGGTG+TGG + tig0028570:19168-19187 Msa1438510:CDS 65.0%
CGGGTGTGGGCATAGGAACC+AGG + tig0028570:19540-19559 Msa1438510:CDS 65.0%
GGTGCCTGTGGGTGCTTCGT+GGG + tig0028570:19717-19736 Msa1438510:CDS 65.0%
GGAGGGGTGGTCATGGACAC+CGG + tig0028570:19862-19881 Msa1438510:CDS 65.0%
ACCGGCGATTCGCCGCACAA+CGG - tig0028570:19131-19150 None:intergenic 65.0%
AGAGGAGTTCGGGTCGGGTG+TGG + tig0028570:19168-19187 Msa1438510:CDS 65.0%
CGGGTGTGGGCATAGGAACC+AGG + tig0028570:19540-19559 Msa1438510:CDS 65.0%
GGTGCCTGTGGGTGCTTCGT+GGG + tig0028570:19717-19736 Msa1438510:CDS 65.0%
GGAGGGGTGGTCATGGACAC+CGG + tig0028570:19862-19881 Msa1438510:CDS 65.0%
GGCGATTCGCCGCACAACGG+CGG - tig0028570:19128-19147 None:intergenic 70.0%
GCCGTTGTGCGGCGAATCGC+CGG + tig0028570:19127-19146 Msa1438510:CDS 70.0%
CGGCGAATCGCCGGTAGCGT+CGG + tig0028570:19136-19155 Msa1438510:CDS 70.0%
GGCGAATCGCCGGTAGCGTC+GGG + tig0028570:19137-19156 Msa1438510:CDS 70.0%
CGGTGCCTGTGGGTGCTTCG+TGG + tig0028570:19716-19735 Msa1438510:CDS 70.0%
GGGTGAGGGAGGGGTGGTCA+TGG + tig0028570:19855-19874 Msa1438510:CDS 70.0%
ACACCGGCACTGCCGTGACG+AGG + tig0028570:19878-19897 Msa1438510:CDS 70.0%
GGCGATTCGCCGCACAACGG+CGG - tig0028570:19128-19147 None:intergenic 70.0%
GCCGTTGTGCGGCGAATCGC+CGG + tig0028570:19127-19146 Msa1438510:CDS 70.0%
CGGCGAATCGCCGGTAGCGT+CGG + tig0028570:19136-19155 Msa1438510:CDS 70.0%
GGCGAATCGCCGGTAGCGTC+GGG + tig0028570:19137-19156 Msa1438510:CDS 70.0%
CGGTGCCTGTGGGTGCTTCG+TGG + tig0028570:19716-19735 Msa1438510:CDS 70.0%
GGGTGAGGGAGGGGTGGTCA+TGG + tig0028570:19855-19874 Msa1438510:CDS 70.0%
ACACCGGCACTGCCGTGACG+AGG + tig0028570:19878-19897 Msa1438510:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0028570 gene 18782 20242 18782 ID=Msa1438510;Name=Msa1438510
tig0028570 mRNA 18782 20242 18782 ID=Msa1438510-mRNA-1;Parent=Msa1438510;Name=Msa1438510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|486
tig0028570 exon 18782 20242 18782 ID=Msa1438510-mRNA-1:exon:11276;Parent=Msa1438510-mRNA-1
tig0028570 CDS 18782 20242 18782 ID=Msa1438510-mRNA-1:cds;Parent=Msa1438510-mRNA-1
Gene Sequence

>Msa1438510

ATGGTATTGGTTTTGTTTCTTCTACCATTTCTCTTTCTCACTACCTCAACTTCCATTCTAACCTCATCACCTTCACATAACCTTTCATACCCTCATTTCCAACGCATCAACGTGAAACAAACTATTGCAGAAACAAAGCTAAATTTGAAGCCTTTTCATACAACCAAACAACCCCAAGAAAACCGAAAATCCAACACTGAGTCCATGAATGAAAAATCAGACTCAGTATCAGGAAAACACAAACTGAAGCTACTTCACAGAGATAAAATTTCTGCCTTTAACATTTCCGGTGATCATCTCACCCGTTTCAATGCACGAATGGAGAGAGATTCTAAAAGGGTCACCGCCGTTGTGCGGCGAATCGCCGGTAGCGTCGGGTATGAAACAGAGGAGTTCGGGTCGGGTGTGGTTTCGGGTATGGAGCAAGGAAGTGGAGAGTATTTCGTAAGAATAGGAGTTGGAAGTCCACCAAAAAACCAATACGTGGTTATTGATTCGGGCAGTGACATTATTTGGGTCCAGTGTCAACCATGTACCCAATGTTATCACCAATCCGACCCGGTTTTTAACCCGGGGGATTCTTCATCTTATGCTGGTGTGTCTTGCGGTTCCACCGTATGTAGCCGTGTGGAGAATGCAGGGTGTCATGAAGGGAGGTGCCGTTATGAGGTTTCTTATGGGGATGGGTCCTATACTAAAGGGACACTTGCCCTTGAGACTGTTACATTGGGAGGAACTGTGATCCGAAACGTGGCTATCGGGTGTGGGCATAGGAACCAGGGTATGTTTGTTGGAGCAGCTGGGTTGTTGGGTCTTGGAAGTGGGCCCATGTCTTTTGTAGGCCAATTAGGTGGTCAGACTGGCGGTACATTTAGTTATTGTTTAGTGAGTCGGGGCACTGAATCATCTGGGTCGCTAGAATTTGGACGAGAATCGGTGCCTGTGGGTGCTTCGTGGGTTTCCCTGATTCATAACCCACGGGCTCCGAGTTTTTATTATATCGGGCTTTCGGGTCTTGGAGTTGGGGGGTTGAGGGTTCCTATATCGGAAGATGTTTTTCGGTTAAATGAATTGGGTGAGGGAGGGGTGGTCATGGACACCGGCACTGCCGTGACGAGGTTACCTACGCCGGCTTACAATGCATTTCGGGATGCATTTATTGCTCAAACGACAAACCTACCCAAAACATCAGGAGTATCCATTTTTGACACATGTTATGATTTAAACGGGTTTGTGACGGTTCGGGTTCCAACCATATCATTTTATTTCTCGGGTGGGCCTATATTGACCCTTCCAGCTAGGAACTTCTTAATTCCAGTGGATAGTGTGGGAACTTTTTGCTTTGCATTTGCTCCTTCTTCTTCAGGACTTTCCATCATAGGAAACATCCAGCAAGAAGGGATTGAAATTTCAGTGGATGGAGCTAATGGGTATATGGGATTTGGACCCAATGTATGTTAA

Protein sequence

>Msa1438510

MVLVLFLLPFLFLTTSTSILTSSPSHNLSYPHFQRINVKQTIAETKLNLKPFHTTKQPQENRKSNTESMNEKSDSVSGKHKLKLLHRDKISAFNISGDHLTRFNARMERDSKRVTAVVRRIAGSVGYETEEFGSGVVSGMEQGSGEYFVRIGVGSPPKNQYVVIDSGSDIIWVQCQPCTQCYHQSDPVFNPGDSSSYAGVSCGSTVCSRVENAGCHEGRCRYEVSYGDGSYTKGTLALETVTLGGTVIRNVAIGCGHRNQGMFVGAAGLLGLGSGPMSFVGQLGGQTGGTFSYCLVSRGTESSGSLEFGRESVPVGASWVSLIHNPRAPSFYYIGLSGLGVGGLRVPISEDVFRLNELGEGGVVMDTGTAVTRLPTPAYNAFRDAFIAQTTNLPKTSGVSIFDTCYDLNGFVTVRVPTISFYFSGGPILTLPARNFLIPVDSVGTFCFAFAPSSSGLSIIGNIQQEGIEISVDGANGYMGFGPNVC*