AlfalfaGEDB | Msa1438510

M. sativa cultivar zhongmu-4 / Msa1438510

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF14543.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438510	XP_013470408.1	96.095	461	18	0	26	486	26	486	0.0	872

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438510	sp\|Q9LHE3\|ASPG2_ARATH	66.667	462	132	3	31	486	25	470	0.0	594

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438510	A0A072VS01	96.095	461	18	0	26	486	26	486	0.0	872

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa1438510	0.822092	2.849738e-53	-8.615850e-47
Msa0005560	Msa1438510	0.834211	3.417844e-56	-8.615850e-47
Msa0006080	Msa1438510	0.826759	2.274422e-54	-8.615850e-47
Msa0006840	Msa1438510	0.833514	5.105371e-56	-8.615850e-47
Msa0009530	Msa1438510	-0.832673	8.264140e-56	-8.615850e-47
Msa0009560	Msa1438510	-0.845077	5.083482e-59	-8.615850e-47
Msa0011010	Msa1438510	0.811734	6.035473e-51	-8.615850e-47
Msa0011040	Msa1438510	0.804201	2.419948e-49	-8.615850e-47
Msa0013270	Msa1438510	0.851778	7.112270e-61	-8.615850e-47
Msa0016380	Msa1438510	-0.817269	3.599748e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438510	MtrunA17_Chr1g0212321	96.095	461	18	0	26	486	26	486	0.0	872
Msa1438510	MtrunA17_Chr1g0165201	65.880	466	124	6	32	486	28	469	0.0	598
Msa1438510	MtrunA17_Chr1g0210201	49.140	407	194	5	82	486	72	467	1.08e-132	392
Msa1438510	MtrunA17_Chr7g0275731	46.697	439	222	9	54	486	52	484	3.35e-124	371
Msa1438510	MtrunA17_Chr6g0484901	40.159	503	258	11	1	486	15	491	1.63e-113	343
Msa1438510	MtrunA17_Chr8g0390761	38.547	358	211	6	126	479	96	448	3.55e-88	277
Msa1438510	MtrunA17_Chr3g0130931	37.292	421	237	12	78	486	43	448	3.87e-84	266
Msa1438510	MtrunA17_Chr3g0099891	39.773	352	193	9	143	486	114	454	4.39e-73	238
Msa1438510	MtrunA17_Chr4g0001991	35.147	441	247	12	67	486	95	517	3.71e-72	237
Msa1438510	MtrunA17_Chr3g0095891	33.638	437	249	9	81	486	32	458	3.07e-71	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438510	AT3G20015.1	66.667	462	132	3	31	486	25	470	0.0	594
Msa1438510	AT3G18490.1	46.092	499	231	10	11	486	17	500	1.24e-135	401
Msa1438510	AT1G25510.1	44.586	471	236	8	33	486	21	483	3.08e-130	387
Msa1438510	AT1G01300.1	48.434	415	200	7	82	486	74	484	5.23e-123	368
Msa1438510	AT3G61820.1	45.863	423	209	7	82	486	63	483	2.56e-119	358
Msa1438510	AT5G10770.1	38.389	422	239	10	79	486	59	473	4.61e-85	270
Msa1438510	AT5G10760.1	36.804	413	246	8	79	486	62	464	3.72e-74	241
Msa1438510	AT2G03200.1	37.119	361	205	10	143	486	103	458	5.21e-73	238
Msa1438510	AT1G79720.1	34.360	422	243	8	82	481	68	477	7.91e-66	220
Msa1438510	AT5G33340.1	34.772	417	241	13	84	486	35	434	1.87e-65	218

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Find 174 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGGTTTGTGACGGTTC+GGG	0.329915	tig0028570:+20005	Msa1438510:CDS
AAAGGGTCACCGCCGTTGTG+CGG	0.600828	tig0028570:+19116	Msa1438510:CDS
AAAGTTCCCACACTATCCAC+TGG	0.580370	tig0028570:-20096	None:intergenic
AAATGAATTGGGTGAGGGAG+GGG	0.345584	tig0028570:+19846	Msa1438510:CDS
AAATTTCAATCCCTTCTTGC+TGG	0.331540	tig0028570:-20170	None:intergenic
AAGAAACAAAACCAATACCA+TGG	0.658520	tig0028570:-18780	None:intergenic
AAGGTTATGTGAAGGTGATG+AGG	0.669820	tig0028570:-18843	None:intergenic
AATACAAGCAACCATGGTAT+TGG	0.429601	tig0028570:+18769	None:intergenic
AATGCATTGTAAGCCGGCGT+AGG	0.585492	tig0028570:-19904	None:intergenic
AATGGAGAGAGATTCTAAAA+GGG	0.567636	tig0028570:+19099	Msa1438510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCTGCCTTTAACATTTC+CGG	+	tig0028570:19049-19068	Msa1438510:CDS	30.0%
TATTTCGTAAGAATAGGAGT+TGG	+	tig0028570:19220-19239	Msa1438510:CDS	30.0%
TAGTTATTGTTTAGTGAGTC+GGG	+	tig0028570:19654-19673	Msa1438510:CDS	30.0%
AGCCCGATATAATAAAAACT+CGG	-	tig0028570:19769-19788	None:intergenic	30.0%
ACCCGAGAAATAAAATGATA+TGG	-	tig0028570:20037-20056	None:intergenic	30.0%
ATTTCTGCCTTTAACATTTC+CGG	+	tig0028570:19049-19068	Msa1438510:CDS	30.0%
TATTTCGTAAGAATAGGAGT+TGG	+	tig0028570:19220-19239	Msa1438510:CDS	30.0%
TAGTTATTGTTTAGTGAGTC+GGG	+	tig0028570:19654-19673	Msa1438510:CDS	30.0%
AGCCCGATATAATAAAAACT+CGG	-	tig0028570:19769-19788	None:intergenic	30.0%
ACCCGAGAAATAAAATGATA+TGG	-	tig0028570:20037-20056	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0028570	gene	18782	20242	18782	ID=Msa1438510;Name=Msa1438510
tig0028570	mRNA	18782	20242	18782	ID=Msa1438510-mRNA-1;Parent=Msa1438510;Name=Msa1438510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|486
tig0028570	exon	18782	20242	18782	ID=Msa1438510-mRNA-1:exon:11276;Parent=Msa1438510-mRNA-1
tig0028570	CDS	18782	20242	18782	ID=Msa1438510-mRNA-1:cds;Parent=Msa1438510-mRNA-1

Gene Sequence

>Msa1438510

ATGGTATTGGTTTTGTTTCTTCTACCATTTCTCTTTCTCACTACCTCAACTTCCATTCTAACCTCATCACCTTCACATAACCTTTCATACCCTCATTTCCAACGCATCAACGTGAAACAAACTATTGCAGAAACAAAGCTAAATTTGAAGCCTTTTCATACAACCAAACAACCCCAAGAAAACCGAAAATCCAACACTGAGTCCATGAATGAAAAATCAGACTCAGTATCAGGAAAACACAAACTGAAGCTACTTCACAGAGATAAAATTTCTGCCTTTAACATTTCCGGTGATCATCTCACCCGTTTCAATGCACGAATGGAGAGAGATTCTAAAAGGGTCACCGCCGTTGTGCGGCGAATCGCCGGTAGCGTCGGGTATGAAACAGAGGAGTTCGGGTCGGGTGTGGTTTCGGGTATGGAGCAAGGAAGTGGAGAGTATTTCGTAAGAATAGGAGTTGGAAGTCCACCAAAAAACCAATACGTGGTTATTGATTCGGGCAGTGACATTATTTGGGTCCAGTGTCAACCATGTACCCAATGTTATCACCAATCCGACCCGGTTTTTAACCCGGGGGATTCTTCATCTTATGCTGGTGTGTCTTGCGGTTCCACCGTATGTAGCCGTGTGGAGAATGCAGGGTGTCATGAAGGGAGGTGCCGTTATGAGGTTTCTTATGGGGATGGGTCCTATACTAAAGGGACACTTGCCCTTGAGACTGTTACATTGGGAGGAACTGTGATCCGAAACGTGGCTATCGGGTGTGGGCATAGGAACCAGGGTATGTTTGTTGGAGCAGCTGGGTTGTTGGGTCTTGGAAGTGGGCCCATGTCTTTTGTAGGCCAATTAGGTGGTCAGACTGGCGGTACATTTAGTTATTGTTTAGTGAGTCGGGGCACTGAATCATCTGGGTCGCTAGAATTTGGACGAGAATCGGTGCCTGTGGGTGCTTCGTGGGTTTCCCTGATTCATAACCCACGGGCTCCGAGTTTTTATTATATCGGGCTTTCGGGTCTTGGAGTTGGGGGGTTGAGGGTTCCTATATCGGAAGATGTTTTTCGGTTAAATGAATTGGGTGAGGGAGGGGTGGTCATGGACACCGGCACTGCCGTGACGAGGTTACCTACGCCGGCTTACAATGCATTTCGGGATGCATTTATTGCTCAAACGACAAACCTACCCAAAACATCAGGAGTATCCATTTTTGACACATGTTATGATTTAAACGGGTTTGTGACGGTTCGGGTTCCAACCATATCATTTTATTTCTCGGGTGGGCCTATATTGACCCTTCCAGCTAGGAACTTCTTAATTCCAGTGGATAGTGTGGGAACTTTTTGCTTTGCATTTGCTCCTTCTTCTTCAGGACTTTCCATCATAGGAAACATCCAGCAAGAAGGGATTGAAATTTCAGTGGATGGAGCTAATGGGTATATGGGATTTGGACCCAATGTATGTTAA

Protein sequence

>Msa1438510

MVLVLFLLPFLFLTTSTSILTSSPSHNLSYPHFQRINVKQTIAETKLNLKPFHTTKQPQENRKSNTESMNEKSDSVSGKHKLKLLHRDKISAFNISGDHLTRFNARMERDSKRVTAVVRRIAGSVGYETEEFGSGVVSGMEQGSGEYFVRIGVGSPPKNQYVVIDSGSDIIWVQCQPCTQCYHQSDPVFNPGDSSSYAGVSCGSTVCSRVENAGCHEGRCRYEVSYGDGSYTKGTLALETVTLGGTVIRNVAIGCGHRNQGMFVGAAGLLGLGSGPMSFVGQLGGQTGGTFSYCLVSRGTESSGSLEFGRESVPVGASWVSLIHNPRAPSFYYIGLSGLGVGGLRVPISEDVFRLNELGEGGVVMDTGTAVTRLPTPAYNAFRDAFIAQTTNLPKTSGVSIFDTCYDLNGFVTVRVPTISFYFSGGPILTLPARNFLIPVDSVGTFCFAFAPSSSGLSIIGNIQQEGIEISVDGANGYMGFGPNVC*