AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858800 MtrunA17_Chr8g0372031 86.957 46 6 0 154 199 323 368 5.66e-21 89.7
Msa0858800 MtrunA17_Chr8g0353961 72.549 51 14 0 29 79 29 79 3.83e-20 82.8
Msa0858800 MtrunA17_Chr3g0138811 44.444 90 42 1 1 90 16 97 2.39e-18 82.0
Msa0858800 MtrunA17_Chr8g0353931 70.588 51 15 0 29 79 29 79 4.49e-18 78.6
Msa0858800 MtrunA17_Chr3g0135431 32.258 124 67 4 2 110 14 135 1.01e-13 68.9
Msa0858800 MtrunA17_Chr8g0380511 45.614 57 31 0 28 84 32 88 2.19e-13 67.8
Msa0858800 MtrunA17_Chr3g0135451 60.417 48 19 0 32 79 38 85 5.07e-13 64.7
Msa0858800 MtrunA17_Chr2g0309251 44.262 61 34 0 29 89 41 101 1.99e-12 65.1
Msa0858800 MtrunA17_Chr3g0135381 53.846 52 24 0 32 83 51 102 3.85e-12 64.3
Msa0858800 MtrunA17_Chr3g0135411 42.857 77 43 1 3 79 36 111 1.03e-11 59.3
Msa0858800 MtrunA17_Chr3g0135371 31.776 107 61 2 4 99 24 129 7.42e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858800 AT2G20170.3 45.000 80 44 0 4 83 7 86 9.34e-14 69.3
Msa0858800 AT2G20170.1 45.000 80 44 0 4 83 7 86 1.06e-13 68.9
Msa0858800 AT2G20170.2 45.000 80 44 0 4 83 7 86 1.06e-13 68.9
Msa0858800 AT3G13510.1 47.458 59 31 0 26 84 34 92 1.58e-13 68.6
Msa0858800 AT1G55360.1 47.368 57 30 0 28 84 38 94 1.14e-12 66.2
Msa0858800 AT4G23365.1 52.830 53 25 0 29 81 35 87 4.79e-12 64.3
Msa0858800 AT5G56530.2 48.148 54 28 0 28 81 37 90 1.29e-11 63.2
Msa0858800 AT5G56530.1 48.148 54 28 0 28 81 37 90 1.29e-11 63.2
Msa0858800 AT2G44250.1 49.206 63 30 1 22 82 25 87 2.98e-11 62.0
Msa0858800 AT4G15053.1 29.032 155 76 4 15 166 21 144 3.93e-11 61.6
Msa0858800 AT4G23373.1 54.000 50 23 0 32 81 35 84 7.19e-11 60.5

Find 73 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTCTATAGACAAAATT+TGG 0.109027 5_4:-56628814 Msa0858800:intron
TGCTGTTCCTTTCCATGTTT+TGG 0.147022 5_4:-56629042 Msa0858800:CDS
TGCGATTATTTCTAACAATT+TGG 0.175913 5_4:-56625171 Msa0858800:three_prime_UTR
ACTTATGAATCATAAGTTTC+AGG 0.206048 5_4:-56628737 Msa0858800:intron
TCATCTATGTCAATGTCTTT+TGG 0.217326 5_4:-56622003 Msa0858800:three_prime_UTR
CTTCTCTTTCACTGTGATTT+GGG 0.233195 5_4:+56628985 None:intergenic
TGCTATGAATGATCATTATT+TGG 0.244241 5_4:-56624931 Msa0858800:three_prime_UTR
ACTTCTCTTTCACTGTGATT+TGG 0.245497 5_4:+56628984 None:intergenic
TAACTATTTATTCATTCTTT+TGG 0.266171 5_4:+56622076 None:intergenic
CAACTCATTTGTTTGCAGTA+TGG 0.302120 5_4:-56628071 Msa0858800:CDS
TTGCTGAGAGTAAACTTCTT+TGG 0.302363 5_4:-56625351 Msa0858800:CDS
AGAGCTAGAACTTATTAATA+AGG 0.307542 5_4:-56628948 Msa0858800:CDS
GTTGTGGTTGTTGGTGAATC+AGG 0.314504 5_4:+56625246 None:intergenic
ATGATTGGAAGAAAGGAAAA+AGG 0.318633 5_4:-56622763 Msa0858800:three_prime_UTR
GACATTGATTGAGATCATAT+TGG 0.347392 5_4:+56622170 None:intergenic
AGGTCAAGGTTCTCTGCATC+TGG 0.349914 5_4:+56625315 None:intergenic
TGTAGTCCTGTGATTCAAAA+AGG 0.363057 5_4:+56622832 None:intergenic
GTTCTGTTGGTTGTGGTTGT+TGG 0.365408 5_4:+56625237 None:intergenic
AAGTAGCAGGCCTGCACATC+TGG 0.365591 5_4:-56625211 Msa0858800:three_prime_UTR
GTAATGCTTTCTTGTGTGTC+TGG 0.386959 5_4:+56622144 None:intergenic
CTCTCTGAATCGCGTCCAAC+TGG 0.394223 5_4:-56627190 Msa0858800:intron
AAAGCATTACATTGCAGGAT+TGG 0.404999 5_4:-56622131 Msa0858800:three_prime_UTR
GGTTTCTATAGACAAAATTT+GGG 0.405868 5_4:-56628813 Msa0858800:intron
TTTGGGTACTATCGACTTGA+TGG 0.411850 5_4:+56629002 None:intergenic
ACAAGAAAGCATTACATTGC+AGG 0.412715 5_4:-56622136 Msa0858800:three_prime_UTR
ATAGAGTTATTTAGTTTCAA+TGG 0.414436 5_4:-56626171 Msa0858800:intron
ATGTGTTTAGGATGCAGATT+GGG 0.422576 5_4:-56627223 Msa0858800:intron
TTTACCTTTCATTTATGTAC+TGG 0.422959 5_4:+56624901 None:intergenic
AGCAGTGACACTTGCGTGTT+TGG 0.424113 5_4:-56626098 Msa0858800:CDS
ATTGCTTTGTAGTATGTTCA+AGG 0.424344 5_4:-56622702 Msa0858800:three_prime_UTR
TTGTGCATGTTAGAGTTGTT+TGG 0.429724 5_4:-56621965 Msa0858800:three_prime_UTR
ATTAACGAAAACTTACTCCT+TGG 0.431112 5_4:-56621915 Msa0858800:three_prime_UTR
TTGGTCAATGATAGGATGAT+TGG 0.440695 5_4:-56622778 Msa0858800:three_prime_UTR
TTATAATTATGTCATAGTCT+TGG 0.441239 5_4:+56625104 None:intergenic
TGATAGGATGATTGGAAGAA+AGG 0.442058 5_4:-56622770 Msa0858800:three_prime_UTR
CATTGATATTAATAAGCAAC+CGG 0.445085 5_4:-56628776 Msa0858800:CDS
ACTTTAAGTTCTGTTGGTTG+TGG 0.451121 5_4:+56625230 None:intergenic
CCTGCTACTTTAAGTTCTGT+TGG 0.454245 5_4:+56625224 None:intergenic
CACCGCAGTTGGTCAATGAT+AGG 0.458893 5_4:-56622786 Msa0858800:three_prime_UTR
GGTGTAACATGCTGCAACTC+AGG 0.473231 5_4:-56626077 Msa0858800:intron
AATCACAGTGAAAGAGAAGT+TGG 0.475637 5_4:-56628981 Msa0858800:CDS
CATGTGTTTAGGATGCAGAT+TGG 0.480175 5_4:-56627224 Msa0858800:intron
GCATCATCGTTGTATAATTG+TGG 0.493615 5_4:+56628093 None:intergenic
AGTCCGTCGCGACCCATCTC+CGG 0.500907 5_4:+56624858 None:intergenic
AACTCTAACATGCACAAAGA+TGG 0.512557 5_4:+56621971 None:intergenic
TAGTCTTGGATGATTTCAAA+AGG 0.517943 5_4:+56625146 None:intergenic
ATGAATGATCATTATTTGGT+CGG 0.522563 5_4:-56624927 Msa0858800:three_prime_UTR
AACTTATGATTCATAAGTAA+AGG 0.525015 5_4:+56628742 None:intergenic
GTGCCTAGTGTGCTTGAAGT+TGG 0.543469 5_4:+56622806 None:intergenic
TTGCTTTGTAGTATGTTCAA+GGG 0.543873 5_4:-56622701 Msa0858800:three_prime_UTR
TTGGGTACTATCGACTTGAT+GGG 0.549496 5_4:+56629003 None:intergenic
ACTCCAACTTCAAGCACACT+AGG 0.554262 5_4:-56622809 Msa0858800:three_prime_UTR
ATAGCAGAGACCAGATGTGC+AGG 0.557264 5_4:+56625201 None:intergenic
TAATTAATTTGTAAAGAGTG+TGG 0.558143 5_4:+56626129 None:intergenic
TGCGGAGATCAGAGATGGAT+CGG 0.558765 5_4:-56624832 Msa0858800:three_prime_UTR
CGATGTATCTGCTAGAAATG+AGG 0.560357 5_4:-56622670 Msa0858800:intron
TCATTTGTTTGCAGTATGGA+CGG 0.570671 5_4:-56628067 Msa0858800:intron
CCAACAGAACTTAAAGTAGC+AGG 0.571176 5_4:-56625224 Msa0858800:exon
GATACATGAATGCTCTTGAC+AGG 0.571732 5_4:+56628923 None:intergenic
ATAAATGAAAGGTAAAGTGA+TGG 0.578660 5_4:-56624894 Msa0858800:three_prime_UTR
AATGTTAGCCACCCAAAACA+TGG 0.578760 5_4:+56629030 None:intergenic
CTTGCTGCGGAGATCAGAGA+TGG 0.579873 5_4:-56624837 Msa0858800:three_prime_UTR
GGTCAAGGTTCTCTGCATCT+GGG 0.580936 5_4:+56625316 None:intergenic
GTCTCCAGTACATAAATGAA+AGG 0.584106 5_4:-56624905 Msa0858800:three_prime_UTR
AGTAAAGGATGATCAAAGGC+CGG 0.584937 5_4:+56628757 None:intergenic
TGAAACATAAAGACACAGCT+AGG 0.592036 5_4:+56622046 None:intergenic
AAAGAAGTTTACTCTCAGCA+AGG 0.612122 5_4:+56625353 None:intergenic
CATAAGTAAAGGATGATCAA+AGG 0.612797 5_4:+56628753 None:intergenic
GGGTCGCGACGGACTTGCTG+CGG 0.617626 5_4:-56624850 Msa0858800:three_prime_UTR
TAGCCACCCAAAACATGGAA+AGG 0.622180 5_4:+56629035 None:intergenic
AGACCGGAGATGGGTCGCGA+CGG 0.641892 5_4:-56624861 Msa0858800:three_prime_UTR
ATCCTATCATTGACCAACTG+CGG 0.651628 5_4:+56622784 None:intergenic
AGCACACTAGGCACCGCAGT+TGG 0.666753 5_4:-56622797 Msa0858800:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr5_4:56626475-56626494 Msa0858800:intron 0.0%
!! TATATATATATATATATATA+GGG - chr5_4:56626476-56626495 Msa0858800:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr5_4:56626475-56626494 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr5_4:56626476-56626495 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr5_4:56626476-56626495 Msa0858800:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr5_4:56626475-56626494 Msa0858800:intron 0.0%
!! TATATATATATATATATATA+GGG + chr5_4:56626476-56626495 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr5_4:56626475-56626494 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr5_4:56626476-56626495 Msa0858800:intron 0.0%
!! AAAAGAAAAAAAAACATAAA+TGG + chr5_4:56624178-56624197 None:intergenic 10.0%
!!! TTAAACATAAATATTGATTT+AGG + chr5_4:56626321-56626340 None:intergenic 10.0%
!!! ATTTTTTAAAAAATTATCCA+AGG - chr5_4:56628357-56628376 Msa0858800:intron 10.0%
!! TAAATAATGAATAACTAAAT+CGG + chr5_4:56628647-56628666 None:intergenic 10.0%
!! CAAAATAAAATTAGAAAAAC+TGG - chr5_4:56622282-56622301 Msa0858800:intron 15.0%
!! TGAATTTATAAACTCAAAAT+TGG + chr5_4:56622879-56622898 None:intergenic 15.0%
!! TGAATTTATAAACTCAAAAT+TGG + chr5_4:56622879-56622898 None:intergenic 15.0%
!!! TTCAATATATTTTTTCAATG+AGG - chr5_4:56623001-56623020 Msa0858800:intron 15.0%
!! TGAATTTGATTAAATTAATC+AGG - chr5_4:56623876-56623895 Msa0858800:intron 15.0%
!!! TAGCAAAATAATTTTTGAAT+AGG - chr5_4:56624331-56624350 Msa0858800:intron 15.0%
!!! AAAATAATTTTTGAATAGGA+TGG - chr5_4:56624335-56624354 Msa0858800:intron 15.0%
!!! TTTATTTTTAACACTTCATT+TGG - chr5_4:56624851-56624870 Msa0858800:three_prime_UTR 15.0%
!!! TTATTTTGTAGATATTTTTC+AGG - chr5_4:56625074-56625093 Msa0858800:intron 15.0%
!!! TTGGTAATAATTTAAGAAAA+TGG + chr5_4:56625245-56625264 None:intergenic 15.0%
!! TAAACTTGAACATATAATAA+CGG + chr5_4:56625402-56625421 None:intergenic 15.0%
!! TTAAAAAAATCATATAGTCT+TGG + chr5_4:56625758-56625777 None:intergenic 15.0%
!!! AAGACTATATGATTTTTTTA+AGG - chr5_4:56625757-56625776 Msa0858800:intron 15.0%
!! AAAAAAGAATGAATTTGTAA+TGG + chr5_4:56626953-56626972 None:intergenic 15.0%
!!! TATAATTAGTTTATGAGATT+AGG - chr5_4:56627595-56627614 Msa0858800:intron 15.0%
!! TAGGAATTAACATAATATTT+AGG - chr5_4:56627614-56627633 Msa0858800:intron 15.0%
!! TATCCAAAATTATAAAAAAG+AGG - chr5_4:56627672-56627691 Msa0858800:intron 15.0%
!!! TAACCTCTTTTTTATAATTT+TGG + chr5_4:56627678-56627697 None:intergenic 15.0%
!! TTTATATGTTATGAAGTAAA+TGG + chr5_4:56627828-56627847 None:intergenic 15.0%
!!! TTTTTTTTTACAAAGAAATG+TGG - chr5_4:56627959-56627978 Msa0858800:intron 15.0%
!! TTAGTTATTCATTATTTAGT+TGG - chr5_4:56628649-56628668 Msa0858800:intron 15.0%
!!! TAACTATTTATTCATTCTTT+TGG + chr5_4:56628814-56628833 None:intergenic 15.0%
!!! GCTTTTCTTTTATTTGATTA+TGG - chr5_4:56622053-56622072 Msa0858800:three_prime_UTR 20.0%
!! AACTTATGATTCATAAGTAA+AGG + chr5_4:56622148-56622167 None:intergenic 20.0%
!! TTTGAAGAATTCATCAATTA+AGG - chr5_4:56622305-56622324 Msa0858800:intron 20.0%
!! TTAATTGGAATAGTTTATGT+TGG + chr5_4:56622360-56622379 None:intergenic 20.0%
!! AACTAGCATTTAAATTTGAT+AGG + chr5_4:56622479-56622498 None:intergenic 20.0%
!! AAAATGAGCGATTAAATTAA+TGG + chr5_4:56622684-56622703 None:intergenic 20.0%
!!! AAAAAATATAGTTTTCACAC+CGG - chr5_4:56622728-56622747 Msa0858800:three_prime_UTR 20.0%
!! ATCAAACACAAATAAATTTC+CGG + chr5_4:56622750-56622769 None:intergenic 20.0%
!! TGATTTCCTAATTTGATATT+AGG - chr5_4:56622766-56622785 Msa0858800:three_prime_UTR 20.0%
!! ATTGGTAGAAGAAATAAAAT+GGG + chr5_4:56622861-56622880 None:intergenic 20.0%
!! AATTGGTAGAAGAAATAAAA+TGG + chr5_4:56622862-56622881 None:intergenic 20.0%
!! TACCATTCCATATATATATA+GGG + chr5_4:56623119-56623138 None:intergenic 20.0%
!! TTACCATTCCATATATATAT+AGG + chr5_4:56623120-56623139 None:intergenic 20.0%
!! AAAACAAACAACACAAAAAA+AGG + chr5_4:56623456-56623475 None:intergenic 20.0%
!!! TTTTCTCTACTTTTTTGATT+TGG - chr5_4:56623484-56623503 Msa0858800:intron 20.0%
!! TCAATACACAAAAAAAATTC+TGG + chr5_4:56623628-56623647 None:intergenic 20.0%
!!! TTTTTTTTGTGTATTGATGT+TGG - chr5_4:56623631-56623650 Msa0858800:intron 20.0%
!!! GAATTGAGTTTTTTTAGTAA+TGG - chr5_4:56624027-56624046 Msa0858800:intron 20.0%
!! ATACTTTCCTGAAATAATAA+GGG + chr5_4:56624312-56624331 None:intergenic 20.0%
!! TATACTTTCCTGAAATAATA+AGG + chr5_4:56624313-56624332 None:intergenic 20.0%
!! TTCTAAACTCTATAAAGTAA+AGG - chr5_4:56624488-56624507 Msa0858800:intron 20.0%
!! CATATTCAATGAAAATGTAT+TGG - chr5_4:56624543-56624562 Msa0858800:intron 20.0%
!!! TAATTTTGAGAAAATGCTAA+TGG - chr5_4:56624576-56624595 Msa0858800:intron 20.0%
!! TCTATTCAAAAGTAAAAAGA+AGG + chr5_4:56624701-56624720 None:intergenic 20.0%
!!! ATAGAGTTATTTAGTTTCAA+TGG - chr5_4:56624716-56624735 Msa0858800:intron 20.0%
!!! TAATTAATTTGTAAAGAGTG+TGG + chr5_4:56624761-56624780 None:intergenic 20.0%
!! ATATTGTAAGAAGTCAATTA+AGG - chr5_4:56624949-56624968 Msa0858800:intron 20.0%
!!! CAATTAAGGATTTTTAGAAA+AGG - chr5_4:56624963-56624982 Msa0858800:intron 20.0%
!!! TATAAATAAATTTTGTCAGC+CGG - chr5_4:56625121-56625140 Msa0858800:three_prime_UTR 20.0%
!! TTATAATTATGTCATAGTCT+TGG + chr5_4:56625786-56625805 None:intergenic 20.0%
!! GAATTTATGTTAATTCATGT+AGG - chr5_4:56625847-56625866 Msa0858800:intron 20.0%
!! ACTATAATTATGAAATGACA+AGG + chr5_4:56625893-56625912 None:intergenic 20.0%
!!! AATTCAGAACTTTTATATAC+CGG - chr5_4:56626198-56626217 Msa0858800:intron 20.0%
!!! AATTAGTCGATTATTGATTT+AGG + chr5_4:56626350-56626369 None:intergenic 20.0%
!!! CAATTTATTTGCTTTTGAAA+AGG + chr5_4:56626810-56626829 None:intergenic 20.0%
!! TTCAAAAGCAAATAAATTGA+AGG - chr5_4:56626811-56626830 Msa0858800:intron 20.0%
!! AATCCTAAAAAAAGGAAAAA+TGG + chr5_4:56626912-56626931 None:intergenic 20.0%
!!! TTTCCTTTTTTTAGGATTTA+CGG - chr5_4:56626914-56626933 Msa0858800:intron 20.0%
!! TAGAATGATAAATTAGTAAG+AGG + chr5_4:56628250-56628269 None:intergenic 20.0%
!! ATGTATAAGTAATAATCAAG+TGG - chr5_4:56628420-56628439 Msa0858800:intron 20.0%
!!! TTTTTCTGTTACCTATAAAT+GGG + chr5_4:56628481-56628500 None:intergenic 20.0%
!!! TATGATAATTTGAAACCTTT+AGG + chr5_4:56628619-56628638 None:intergenic 20.0%
!!! AGTAAGTTTTCGTTAATTAA+TGG + chr5_4:56628969-56628988 None:intergenic 20.0%
! AGAGCTAGAACTTATTAATA+AGG - chr5_4:56621939-56621958 Msa0858800:three_prime_UTR 25.0%
! TTGAACTTAATCTTACTACA+TGG - chr5_4:56622024-56622043 Msa0858800:three_prime_UTR 25.0%
! TGGTTTCTATAGACAAAATT+TGG - chr5_4:56622073-56622092 Msa0858800:three_prime_UTR 25.0%
! GGTTTCTATAGACAAAATTT+GGG - chr5_4:56622074-56622093 Msa0858800:three_prime_UTR 25.0%
! CATTGATATTAATAAGCAAC+CGG - chr5_4:56622111-56622130 Msa0858800:three_prime_UTR 25.0%
! ACTTATGAATCATAAGTTTC+AGG - chr5_4:56622150-56622169 Msa0858800:three_prime_UTR 25.0%
! CATAAACTATTCCAATTAAG+AGG - chr5_4:56622361-56622380 Msa0858800:intron 25.0%
! GATTAAAAAACGATTTGCAT+CGG + chr5_4:56622407-56622426 None:intergenic 25.0%
! TTTCCTAATTTGATATTAGG+TGG - chr5_4:56622769-56622788 Msa0858800:three_prime_UTR 25.0%
! TGAGGTCTACTTATATATAT+AGG - chr5_4:56623019-56623038 Msa0858800:intron 25.0%
!! TTTTTGTTGATCTCATTTGA+TGG - chr5_4:56623549-56623568 Msa0858800:intron 25.0%
! ATATGCATTCAATCATGATT+TGG + chr5_4:56623578-56623597 None:intergenic 25.0%
!!! TTTTTGCTGTTGTAAATATG+AGG - chr5_4:56623744-56623763 Msa0858800:intron 25.0%
!!! TATTGTGTTTTTGTTACAGA+GGG - chr5_4:56623803-56623822 Msa0858800:intron 25.0%
!! CAGGTATGAAATTATAGTTT+TGG - chr5_4:56623895-56623914 Msa0858800:intron 25.0%
! ATGTATGATATGATAGAAAC+AGG + chr5_4:56623998-56624017 None:intergenic 25.0%
! ATGGTATCTGATGTATATTT+AGG - chr5_4:56624046-56624065 Msa0858800:intron 25.0%
! ATTTAGGAGGAAATTAATGT+TGG - chr5_4:56624062-56624081 Msa0858800:intron 25.0%
! TTTAGGAGGAAATTAATGTT+GGG - chr5_4:56624063-56624082 Msa0858800:intron 25.0%
!!! TTTCATGTAGATATTGACTT+AGG - chr5_4:56624141-56624160 Msa0858800:intron 25.0%
!! TTTTCTTTTGTCTGCATATA+TGG - chr5_4:56624189-56624208 Msa0858800:intron 25.0%
!! TTTCTTTTGTCTGCATATAT+GGG - chr5_4:56624190-56624209 Msa0858800:intron 25.0%
!!! TGAAATAATAAGGGTATCTT+AGG + chr5_4:56624303-56624322 None:intergenic 25.0%
! TAAGATACCCTTATTATTTC+AGG - chr5_4:56624302-56624321 Msa0858800:intron 25.0%
! AAACTCTATAAAGTAAAGGA+CGG - chr5_4:56624492-56624511 Msa0858800:intron 25.0%
!!! TTTTCAGGAAAATCAAGTAT+TGG - chr5_4:56625089-56625108 Msa0858800:intron 25.0%
!! ATAAATAAATTTTGTCAGCC+GGG - chr5_4:56625122-56625141 Msa0858800:three_prime_UTR 25.0%
!!! GCACTTTTAATTTTTAGTGT+CGG + chr5_4:56625179-56625198 None:intergenic 25.0%
!! CTAAAAATTAAAAGTGCATC+TGG - chr5_4:56625182-56625201 Msa0858800:three_prime_UTR 25.0%
!!! TGCGATTATTTCTAACAATT+TGG - chr5_4:56625716-56625735 Msa0858800:intron 25.0%
! TGCTATGAATGATCATTATT+TGG - chr5_4:56625956-56625975 Msa0858800:intron 25.0%
! ATGAATGATCATTATTTGGT+CGG - chr5_4:56625960-56625979 Msa0858800:intron 25.0%
! TTTACCTTTCATTTATGTAC+TGG + chr5_4:56625989-56626008 None:intergenic 25.0%
! ATAAATGAAAGGTAAAGTGA+TGG - chr5_4:56625993-56626012 Msa0858800:intron 25.0%
!!! AGAAGTTTTTGGTTTGATTT+TGG - chr5_4:56626078-56626097 Msa0858800:CDS 25.0%
!!! AGTTTTGGTTTTTCCAAAAA+CGG - chr5_4:56626142-56626161 Msa0858800:CDS 25.0%
! GAACTAATATTAAACTGAAC+CGG + chr5_4:56626220-56626239 None:intergenic 25.0%
! GGTTCAGTTTAATATTAGTT+CGG - chr5_4:56626219-56626238 Msa0858800:intron 25.0%
! AATTAGATGATGAATAGTAG+GGG + chr5_4:56626292-56626311 None:intergenic 25.0%
! CAATTAGATGATGAATAGTA+GGG + chr5_4:56626293-56626312 None:intergenic 25.0%
! TCAATTAGATGATGAATAGT+AGG + chr5_4:56626294-56626313 None:intergenic 25.0%
!!! CTTTTTTGTCCAATCATTAA+AGG + chr5_4:56626777-56626796 None:intergenic 25.0%
!!! GCTTTTGAAAAGGAAAAATA+GGG + chr5_4:56626800-56626819 None:intergenic 25.0%
!!! TGCTTTTGAAAAGGAAAAAT+AGG + chr5_4:56626801-56626820 None:intergenic 25.0%
!!! AAGCCATTTTTCCTTTTTTT+AGG - chr5_4:56626906-56626925 Msa0858800:intron 25.0%
! TCAAAAACAAATCAGCTAAA+GGG + chr5_4:56627434-56627453 None:intergenic 25.0%
! TTCAAAAACAAATCAGCTAA+AGG + chr5_4:56627435-56627454 None:intergenic 25.0%
!!! TAGCTGATTTGTTTTTGAAA+AGG - chr5_4:56627436-56627455 Msa0858800:intron 25.0%
!!! AGCTGATTTGTTTTTGAAAA+GGG - chr5_4:56627437-56627456 Msa0858800:intron 25.0%
!!! TTTTTGTCACCTTTTTAAGA+TGG - chr5_4:56628030-56628049 Msa0858800:intron 25.0%
!!! TTTTGTCACCTTTTTAAGAT+GGG - chr5_4:56628031-56628050 Msa0858800:intron 25.0%
! TCTCATAATATTAAGACGTA+GGG - chr5_4:56628312-56628331 Msa0858800:intron 25.0%
! TAGCTTAATAGAGTTAGAAT+GGG - chr5_4:56628383-56628402 Msa0858800:intron 25.0%
!!! GGAAATTGTCTATTGTTTTT+CGG - chr5_4:56628447-56628466 Msa0858800:intron 25.0%
!! GTTTTTCTGTTACCTATAAA+TGG + chr5_4:56628482-56628501 None:intergenic 25.0%
! TGCAATTCTGATTATAGTTT+AGG + chr5_4:56628576-56628595 None:intergenic 25.0%
CATAAGTAAAGGATGATCAA+AGG + chr5_4:56622137-56622156 None:intergenic 30.0%
TCATCAATTAAGGCTATGTT+TGG - chr5_4:56622315-56622334 Msa0858800:intron 30.0%
CATCAATTAAGGCTATGTTT+GGG - chr5_4:56622316-56622335 Msa0858800:intron 30.0%
GAATAGTTTATGTTGGACAT+TGG + chr5_4:56622353-56622372 None:intergenic 30.0%
TCTTTAGTTGTCCTCTTAAT+TGG + chr5_4:56622375-56622394 None:intergenic 30.0%
GTAAAAGAGCCTACATATTA+TGG - chr5_4:56622566-56622585 Msa0858800:intron 30.0%
GAACCACCTAATATCAAATT+AGG + chr5_4:56622775-56622794 None:intergenic 30.0%
AACATACACAATGCTGAAAA+AGG + chr5_4:56622956-56622975 None:intergenic 30.0%
! TCAGCATTGTGTATGTTTTA+TGG - chr5_4:56622959-56622978 Msa0858800:intron 30.0%
! CAGCATTGTGTATGTTTTAT+GGG - chr5_4:56622960-56622979 Msa0858800:intron 30.0%
GGGCAAAATTGTCAAAAAAA+CGG + chr5_4:56623056-56623075 None:intergenic 30.0%
TTTACAAAAATACCCCCAAA+GGG + chr5_4:56623077-56623096 None:intergenic 30.0%
ATTTACAAAAATACCCCCAA+AGG + chr5_4:56623078-56623097 None:intergenic 30.0%
ACCTTTGCCCTATATATATA+TGG - chr5_4:56623109-56623128 Msa0858800:intron 30.0%
TCCATATATATATAGGGCAA+AGG + chr5_4:56623113-56623132 None:intergenic 30.0%
TGCCCTATATATATATGGAA+TGG - chr5_4:56623114-56623133 Msa0858800:intron 30.0%
! TTGTGTATTGATGTTGGTTA+TGG - chr5_4:56623637-56623656 Msa0858800:intron 30.0%
AAAAAAAAACCCATACCAGT+TGG + chr5_4:56623715-56623734 None:intergenic 30.0%
!! GTATTGTGTTTTTGTTACAG+AGG - chr5_4:56623802-56623821 Msa0858800:intron 30.0%
AACTGCACTGTCTTTATAAA+GGG + chr5_4:56623841-56623860 None:intergenic 30.0%
AAACTGCACTGTCTTTATAA+AGG + chr5_4:56623842-56623861 None:intergenic 30.0%
GTGCAGTTTATGTGATTATT+TGG - chr5_4:56623853-56623872 Msa0858800:intron 30.0%
! CAAAAAAAGGTGTACATCAA+GGG + chr5_4:56623943-56623962 None:intergenic 30.0%
! ACAAAAAAAGGTGTACATCA+AGG + chr5_4:56623944-56623963 None:intergenic 30.0%
GCAGCAATATCTACAAAAAA+AGG + chr5_4:56623956-56623975 None:intergenic 30.0%
TCATATCATACATATGACAG+TGG - chr5_4:56624005-56624024 Msa0858800:intron 30.0%
GTATCTGATGTATATTTAGG+AGG - chr5_4:56624049-56624068 Msa0858800:intron 30.0%
TTAGGAGGAAATTAATGTTG+GGG - chr5_4:56624064-56624083 Msa0858800:intron 30.0%
! TTCTTTTGTCTGCATATATG+GGG - chr5_4:56624191-56624210 Msa0858800:intron 30.0%
! ACTGTTAGTAGAGATTTTGT+CGG - chr5_4:56624254-56624273 Msa0858800:intron 30.0%
! TTTTGAATAGGATGGTGAAA+TGG - chr5_4:56624343-56624362 Msa0858800:intron 30.0%
AACTCTATAAAGTAAAGGAC+GGG - chr5_4:56624493-56624512 Msa0858800:intron 30.0%
! ACTCTACTTTGGTGATAATT+TGG - chr5_4:56624914-56624933 Msa0858800:three_prime_UTR 30.0%
! TAAATAAATTTTGTCAGCCG+GGG - chr5_4:56625123-56625142 Msa0858800:three_prime_UTR 30.0%
GTTATGACATGTATTAGTGT+CGG + chr5_4:56625211-56625230 None:intergenic 30.0%
AGATTTGAGCTAAAGATAAC+TGG - chr5_4:56625344-56625363 Msa0858800:CDS 30.0%
GATTTGAGCTAAAGATAACT+GGG - chr5_4:56625345-56625364 Msa0858800:CDS 30.0%
TAGTTCTTGATTAATGAGCT+AGG - chr5_4:56625420-56625439 Msa0858800:intron 30.0%
! ATTTTGTGTGACATTGAGTT+AGG - chr5_4:56625475-56625494 Msa0858800:intron 30.0%
! TAGTCTTGGATGATTTCAAA+AGG + chr5_4:56625744-56625763 None:intergenic 30.0%
!!! TGTGAGTACTCTTTTAAGTT+TGG - chr5_4:56625917-56625936 Msa0858800:intron 30.0%
! GTTATTAACTGAACCGTTTT+TGG + chr5_4:56626158-56626177 None:intergenic 30.0%
! TTCAGTTTAGTTCAACAGTT+TGG - chr5_4:56626242-56626261 Msa0858800:intron 30.0%
AAGAAGAGATGTTAAAACGA+CGG - chr5_4:56626443-56626462 Msa0858800:intron 30.0%
! TTTTATCAAGCAACACCTTA+AGG - chr5_4:56626531-56626550 Msa0858800:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG + chr5_4:56626549-56626568 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG - chr5_4:56626591-56626610 Msa0858800:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr5_4:56626597-56626616 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG - chr5_4:56626646-56626665 Msa0858800:intron 30.0%
CATTGAACACCTTTAATGAT+TGG - chr5_4:56626765-56626784 Msa0858800:intron 30.0%
GAACCGTAAATCCTAAAAAA+AGG + chr5_4:56626920-56626939 None:intergenic 30.0%
AATGAATTTGTAATGGTGTG+TGG + chr5_4:56626946-56626965 None:intergenic 30.0%
AAAAAAACGAATTGCTTCTC+TGG - chr5_4:56627253-56627272 Msa0858800:intron 30.0%
AACATTGAGAACAACAACAA+TGG - chr5_4:56627327-56627346 Msa0858800:intron 30.0%
!!! ACTTTTTTGTCCAAGCATTA+AGG - chr5_4:56627468-56627487 Msa0858800:intron 30.0%
!!! CTTTTTTGTCCAAGCATTAA+GGG - chr5_4:56627469-56627488 Msa0858800:intron 30.0%
TTATTCAATTAGAAAGCAGC+TGG + chr5_4:56627880-56627899 None:intergenic 30.0%
AAAAAGGACCCATCTTAAAA+AGG + chr5_4:56628042-56628061 None:intergenic 30.0%
ATGATTGGAAGAAAGGAAAA+AGG - chr5_4:56628124-56628143 Msa0858800:intron 30.0%
ATTGCTTTGTAGTATGTTCA+AGG - chr5_4:56628185-56628204 Msa0858800:intron 30.0%
TTGCTTTGTAGTATGTTCAA+GGG - chr5_4:56628186-56628205 Msa0858800:intron 30.0%
CTCTCATAATATTAAGACGT+AGG - chr5_4:56628311-56628330 Msa0858800:intron 30.0%
GTAGCTTAATAGAGTTAGAA+TGG - chr5_4:56628382-56628401 Msa0858800:intron 30.0%
AAGTAATAATCAAGTGGAAG+TGG - chr5_4:56628426-56628445 Msa0858800:intron 30.0%
CTATAATCAGAATTGCATCA+TGG - chr5_4:56628579-56628598 Msa0858800:intron 30.0%
! GACATTGATTGAGATCATAT+TGG + chr5_4:56628720-56628739 None:intergenic 30.0%
! TCATCTATGTCAATGTCTTT+TGG - chr5_4:56628884-56628903 Msa0858800:intron 30.0%
ATTAACGAAAACTTACTCCT+TGG - chr5_4:56628972-56628991 Msa0858800:CDS 30.0%
!!! ACATATTTTTCAAGCATCCA+AGG + chr5_4:56628992-56629011 None:intergenic 30.0%
CTTCTCTTTCACTGTGATTT+GGG + chr5_4:56621905-56621924 None:intergenic 35.0%
ACTTCTCTTTCACTGTGATT+TGG + chr5_4:56621906-56621925 None:intergenic 35.0%
AATCACAGTGAAAGAGAAGT+TGG - chr5_4:56621906-56621925 Msa0858800:three_prime_UTR 35.0%
GAGCCTACATATTATGGAAT+TGG - chr5_4:56622572-56622591 Msa0858800:intron 35.0%
CCACCAATTCCATAATATGT+AGG + chr5_4:56622578-56622597 None:intergenic 35.0%
CCTACATATTATGGAATTGG+TGG - chr5_4:56622575-56622594 Msa0858800:intron 35.0%
GCATCATCGTTGTATAATTG+TGG + chr5_4:56622797-56622816 None:intergenic 35.0%
CAACTCATTTGTTTGCAGTA+TGG - chr5_4:56622816-56622835 Msa0858800:three_prime_UTR 35.0%
TCATTTGTTTGCAGTATGGA+CGG - chr5_4:56622820-56622839 Msa0858800:three_prime_UTR 35.0%
! TTTTGACAATTTTGCCCCTT+TGG - chr5_4:56623059-56623078 Msa0858800:intron 35.0%
! TTTGACAATTTTGCCCCTTT+GGG - chr5_4:56623060-56623079 Msa0858800:intron 35.0%
TTACAAAAATACCCCCAAAG+GGG + chr5_4:56623076-56623095 None:intergenic 35.0%
TGCTGAAAAAAGATGGAGAA+CGG + chr5_4:56623407-56623426 None:intergenic 35.0%
ACATGCATGCTGAAAAAAGA+TGG + chr5_4:56623414-56623433 None:intergenic 35.0%
!!! TTTTTTCAGCATGCATGTCT+AGG - chr5_4:56623416-56623435 Msa0858800:intron 35.0%
! TTCCTTTTTGATCGATTGAG+AGG - chr5_4:56623520-56623539 Msa0858800:intron 35.0%
ATCCTCTCAATCGATCAAAA+AGG + chr5_4:56623525-56623544 None:intergenic 35.0%
! TTTTGATCGATTGAGAGGAT+TGG - chr5_4:56623525-56623544 Msa0858800:intron 35.0%
TTTGATCGATTGAGAGGATT+GGG - chr5_4:56623526-56623545 Msa0858800:intron 35.0%
GGTTATGGTTTCATGTGTTT+AGG - chr5_4:56623652-56623671 Msa0858800:intron 35.0%
! ATGTGTTTAGGATGCAGATT+GGG - chr5_4:56623664-56623683 Msa0858800:intron 35.0%
AGGAAATTAATGTTGGGGTT+GGG - chr5_4:56624069-56624088 Msa0858800:intron 35.0%
!! GTAGATATTGACTTAGGCAA+AGG - chr5_4:56624147-56624166 Msa0858800:intron 35.0%
! ATTTAAGATCCCTCGAAAGA+AGG - chr5_4:56624383-56624402 Msa0858800:intron 35.0%
TGAGAAAATGCTAATGGTGT+TGG - chr5_4:56624582-56624601 Msa0858800:intron 35.0%
GTCAGAACTGCAATTGATAT+TGG - chr5_4:56624657-56624676 Msa0858800:intron 35.0%
! ACTGCAATTGATATTGGTTG+TGG - chr5_4:56624663-56624682 Msa0858800:intron 35.0%
! CTGCAATTGATATTGGTTGT+GGG - chr5_4:56624664-56624683 Msa0858800:intron 35.0%
! TGCAATTGATATTGGTTGTG+GGG - chr5_4:56624665-56624684 Msa0858800:intron 35.0%
!! GTTCCACTTTTACTCTACTT+TGG - chr5_4:56624903-56624922 Msa0858800:three_prime_UTR 35.0%
TCACCAAAGTAGAGTAAAAG+TGG + chr5_4:56624909-56624928 None:intergenic 35.0%
ATAATTGTTACGATCAACCC+CGG + chr5_4:56625143-56625162 None:intergenic 35.0%
AAAGAAGTTTACTCTCAGCA+AGG + chr5_4:56625537-56625556 None:intergenic 35.0%
TTGCTGAGAGTAAACTTCTT+TGG - chr5_4:56625536-56625555 Msa0858800:intron 35.0%
! CAGTTTCACTGTACTTTTGA+AGG + chr5_4:56625595-56625614 None:intergenic 35.0%
! ACTTTAAGTTCTGTTGGTTG+TGG + chr5_4:56625660-56625679 None:intergenic 35.0%
GTCTCCAGTACATAAATGAA+AGG - chr5_4:56625982-56626001 Msa0858800:intron 35.0%
! GTATCACAATCACTGTCTTT+TGG - chr5_4:56626105-56626124 Msa0858800:CDS 35.0%
!! ACAATCACTGTCTTTTGGTT+TGG - chr5_4:56626110-56626129 Msa0858800:CDS 35.0%
!!! CAATCACTGTCTTTTGGTTT+GGG - chr5_4:56626111-56626130 Msa0858800:CDS 35.0%
!! GTTTGGGTTAAGTTCAGTTT+TGG - chr5_4:56626127-56626146 Msa0858800:CDS 35.0%
TGAATTGAACCATACCTAGA+GGG + chr5_4:56626184-56626203 None:intergenic 35.0%
!! CAACAGTTTGGTTCAGTTTT+TGG - chr5_4:56626254-56626273 Msa0858800:intron 35.0%
TTATGTTACAAGACACCCTT+TGG - chr5_4:56626501-56626520 Msa0858800:intron 35.0%
TGATAAAAGACACCACCAAA+GGG + chr5_4:56626519-56626538 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG + chr5_4:56626520-56626539 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + chr5_4:56626659-56626678 None:intergenic 35.0%
TTCTCCACCTATCTACTTTA+CGG - chr5_4:56626880-56626899 Msa0858800:intron 35.0%
AGAGAGAAGGGAACATAAAT+GGG + chr5_4:56627020-56627039 None:intergenic 35.0%
AAGAGAGAAGGGAACATAAA+TGG + chr5_4:56627021-56627040 None:intergenic 35.0%
ATGAGATTGTGAAGAGAGAA+GGG + chr5_4:56627032-56627051 None:intergenic 35.0%
AATGAGATTGTGAAGAGAGA+AGG + chr5_4:56627033-56627052 None:intergenic 35.0%
!!! GTTGTTTTTCATCTCTCTCA+CGG + chr5_4:56627120-56627139 None:intergenic 35.0%
AAAGTGAGTAACATGTCAAC+AGG - chr5_4:56627697-56627716 Msa0858800:intron 35.0%
ATAAATTGTGTCATCACCTC+TGG - chr5_4:56627896-56627915 Msa0858800:intron 35.0%
!!! GTACTGACTTTTAAGCATCA+TGG - chr5_4:56627918-56627937 Msa0858800:intron 35.0%
! TGACTTTTAAGCATCATGGT+TGG - chr5_4:56627922-56627941 Msa0858800:intron 35.0%
TGTAGTCCTGTGATTCAAAA+AGG + chr5_4:56628058-56628077 None:intergenic 35.0%
TTGGTCAATGATAGGATGAT+TGG - chr5_4:56628109-56628128 Msa0858800:intron 35.0%
TGATAGGATGATTGGAAGAA+AGG - chr5_4:56628117-56628136 Msa0858800:intron 35.0%
ATTGGAAGAAAGGAAAAAGG+AGG - chr5_4:56628127-56628146 Msa0858800:intron 35.0%
AAAGGAAAAAGGAGGCTTAT+TGG - chr5_4:56628135-56628154 Msa0858800:intron 35.0%
!! TCTATTGTTTTTCGGTTAGC+AGG - chr5_4:56628455-56628474 Msa0858800:intron 35.0%
CTAACAAAGTGCACAATGTT+TGG - chr5_4:56628506-56628525 Msa0858800:intron 35.0%
! AGTTGGTTACGAAAGTATGT+TGG - chr5_4:56628666-56628685 Msa0858800:intron 35.0%
!! ACAAGAAAGCATTACATTGC+AGG - chr5_4:56628751-56628770 Msa0858800:CDS 35.0%
! AAAGCATTACATTGCAGGAT+TGG - chr5_4:56628756-56628775 Msa0858800:CDS 35.0%
TGAAACATAAAGACACAGCT+AGG + chr5_4:56628844-56628863 None:intergenic 35.0%
AACTCTAACATGCACAAAGA+TGG + chr5_4:56628919-56628938 None:intergenic 35.0%
TTGTGCATGTTAGAGTTGTT+TGG - chr5_4:56628922-56628941 Msa0858800:intron 35.0%
! TGCTGTTCCTTTCCATGTTT+TGG - chr5_4:56621845-56621864 Msa0858800:three_prime_UTR 40.0%
! GCTGTTCCTTTCCATGTTTT+GGG - chr5_4:56621846-56621865 Msa0858800:three_prime_UTR 40.0%
AATGTTAGCCACCCAAAACA+TGG + chr5_4:56621860-56621879 None:intergenic 40.0%
!! TTGGGTACTATCGACTTGAT+GGG + chr5_4:56621887-56621906 None:intergenic 40.0%
!! TTTGGGTACTATCGACTTGA+TGG + chr5_4:56621888-56621907 None:intergenic 40.0%
GATACATGAATGCTCTTGAC+AGG + chr5_4:56621967-56621986 None:intergenic 40.0%
AGTAAAGGATGATCAAAGGC+CGG + chr5_4:56622133-56622152 None:intergenic 40.0%
AAAACGATTTGCATCGGATG+AGG + chr5_4:56622401-56622420 None:intergenic 40.0%
AATCGAGCACAACTATGATG+TGG - chr5_4:56622636-56622655 Msa0858800:intron 40.0%
ATCGAGCACAACTATGATGT+GGG - chr5_4:56622637-56622656 Msa0858800:intron 40.0%
! TTGACAATTTTGCCCCTTTG+GGG - chr5_4:56623061-56623080 Msa0858800:intron 40.0%
GTGGAGATTAGTGTGTTCAA+CGG + chr5_4:56623385-56623404 None:intergenic 40.0%
TGAAAAAAGATGGAGAACGG+TGG + chr5_4:56623404-56623423 None:intergenic 40.0%
! CATGTGTTTAGGATGCAGAT+TGG - chr5_4:56623663-56623682 Msa0858800:intron 40.0%
TTCACAGAAAGTCCTCAAAC+TGG + chr5_4:56623776-56623795 None:intergenic 40.0%
TGTTACAGAGGGATTTCTGA+TGG - chr5_4:56623814-56623833 Msa0858800:intron 40.0%
TGTACATCAAGGGCAACAAA+AGG + chr5_4:56623933-56623952 None:intergenic 40.0%
! TGCTGCTTGCTTGAATTGTT+TGG - chr5_4:56623970-56623989 Msa0858800:intron 40.0%
GAGGAAATTAATGTTGGGGT+TGG - chr5_4:56624068-56624087 Msa0858800:intron 40.0%
!! GATATTGACTTAGGCAAAGG+AGG - chr5_4:56624150-56624169 Msa0858800:intron 40.0%
ACATGTCCTTCACTAACAAC+AGG + chr5_4:56624422-56624441 None:intergenic 40.0%
TTAATGCAAGATCTGATCCC+AGG - chr5_4:56624618-56624637 Msa0858800:intron 40.0%
TGACTCAAACACGTTGACAT+TGG + chr5_4:56625264-56625283 None:intergenic 40.0%
!! CACTGTACTTTTGAAGGTCA+AGG + chr5_4:56625589-56625608 None:intergenic 40.0%
!! CCTGCTACTTTAAGTTCTGT+TGG + chr5_4:56625666-56625685 None:intergenic 40.0%
CCAACAGAACTTAAAGTAGC+AGG - chr5_4:56625663-56625682 Msa0858800:intron 40.0%
! AGATGGATCGGAGAAGTTTT+TGG - chr5_4:56626067-56626086 Msa0858800:intron 40.0%
GAATTGAACCATACCTAGAG+GGG + chr5_4:56626183-56626202 None:intergenic 40.0%
CTGAATTGAACCATACCTAG+AGG + chr5_4:56626185-56626204 None:intergenic 40.0%
AGATGATGAATAGTAGGGGT+GGG + chr5_4:56626288-56626307 None:intergenic 40.0%
TAGATGATGAATAGTAGGGG+TGG + chr5_4:56626289-56626308 None:intergenic 40.0%
ACACCTTCACAAAAGTGAGT+GGG + chr5_4:56627508-56627527 None:intergenic 40.0%
TGAACCGTAAAGTAGATAGG+TGG + chr5_4:56626887-56626906 None:intergenic 40.0%
GCTTGAACCGTAAAGTAGAT+AGG + chr5_4:56626890-56626909 None:intergenic 40.0%
TTCAACCTCAGACTCTATTG+TGG - chr5_4:56626984-56627003 Msa0858800:intron 40.0%
TCAACCTCAGACTCTATTGT+GGG - chr5_4:56626985-56627004 Msa0858800:intron 40.0%
! TCATCGCCTTCGATTTGTTT+CGG - chr5_4:56627186-56627205 Msa0858800:intron 40.0%
AAATCGCCGAAACAAATCGA+AGG + chr5_4:56627195-56627214 None:intergenic 40.0%
TTGCTTCTCTGGTACAAGAT+TGG - chr5_4:56627264-56627283 Msa0858800:intron 40.0%
TACAAGATTGGACAAGGTTG+TGG - chr5_4:56627276-56627295 Msa0858800:intron 40.0%
AACAATGGCGTAGACAGATT+GGG - chr5_4:56627342-56627361 Msa0858800:intron 40.0%
CATTGAACACCCTTAATGCT+TGG + chr5_4:56627481-56627500 None:intergenic 40.0%
ACACCTTCACAAAAGTGAGT+GGG - chr5_4:56627508-56627527 Msa0858800:intron 40.0%
TGCTTAAAAGTCAGTACCAG+AGG + chr5_4:56627915-56627934 None:intergenic 40.0%
! ATGGGTCCTTTTTGAATCAC+AGG - chr5_4:56628049-56628068 Msa0858800:intron 40.0%
ATCCTATCATTGACCAACTG+CGG + chr5_4:56628106-56628125 None:intergenic 40.0%
CGATGTATCTGCTAGAAATG+AGG - chr5_4:56628217-56628236 Msa0858800:intron 40.0%
ACTCTATTAAGCTACAGCCT+TGG + chr5_4:56628377-56628396 None:intergenic 40.0%
AGTTAGAATGGGATAGACAC+AGG - chr5_4:56628394-56628413 Msa0858800:intron 40.0%
GTCATTTAGCACACTCCTAA+AGG - chr5_4:56628601-56628620 Msa0858800:intron 40.0%
GTAATGCTTTCTTGTGTGTC+TGG + chr5_4:56628746-56628765 None:intergenic 40.0%
!! GTTCCTTTCCATGTTTTGGG+TGG - chr5_4:56621849-56621868 Msa0858800:three_prime_UTR 45.0%
TAGCCACCCAAAACATGGAA+AGG + chr5_4:56621855-56621874 None:intergenic 45.0%
TGTTTGCAGTATGGACGGTA+TGG - chr5_4:56622825-56622844 Msa0858800:three_prime_UTR 45.0%
! TGACAATTTTGCCCCTTTGG+GGG - chr5_4:56623062-56623081 Msa0858800:intron 45.0%
ATAGATCGACGCCGGAAAAT+TGG + chr5_4:56623245-56623264 None:intergenic 45.0%
CGTTTCCTCTCTATTCTCTC+TGG - chr5_4:56623281-56623300 Msa0858800:intron 45.0%
GTGTTCCAGAGAGAATAGAG+AGG + chr5_4:56623289-56623308 None:intergenic 45.0%
!! ATGAGGTGTTGTCCAGTTTG+AGG - chr5_4:56623761-56623780 Msa0858800:intron 45.0%
CTAGGACCTGTTGTTAGTGA+AGG - chr5_4:56624413-56624432 Msa0858800:intron 45.0%
AAAGTAAAGGACGGGTGCTT+TGG - chr5_4:56624501-56624520 Msa0858800:intron 45.0%
GATCTGATCCCAGGAATCAA+AGG - chr5_4:56624627-56624646 Msa0858800:intron 45.0%
TGATCCCAGGAATCAAAGGT+GGG - chr5_4:56624631-56624650 Msa0858800:intron 45.0%
! GTTGTGGTTGTTGGTGAATC+AGG + chr5_4:56625644-56625663 None:intergenic 45.0%
! GTTCTGTTGGTTGTGGTTGT+TGG + chr5_4:56625653-56625672 None:intergenic 45.0%
CAGTTAATAACTGCCCCTCT+AGG - chr5_4:56626167-56626186 Msa0858800:CDS 45.0%
AATAACTGCCCCTCTAGGTA+TGG - chr5_4:56626172-56626191 Msa0858800:intron 45.0%
TGTTACAAGACACCCTTTGG+TGG - chr5_4:56626504-56626523 Msa0858800:intron 45.0%
!! ACACCCACTCACTTTTGTGA+AGG - chr5_4:56626732-56626751 Msa0858800:intron 45.0%
CACACCTTCACAAAAGTGAG+TGG + chr5_4:56627507-56627526 None:intergenic 45.0%
AGAACCCACAATAGAGTCTG+AGG + chr5_4:56626992-56627011 None:intergenic 45.0%
! CATTTTCACAGCATGCAGGA+AGG + chr5_4:56627070-56627089 None:intergenic 45.0%
! GATGCATTTTCACAGCATGC+AGG + chr5_4:56627074-56627093 None:intergenic 45.0%
! GTTTTTCATCTCTCTCACGG+CGG + chr5_4:56627117-56627136 None:intergenic 45.0%
GATGAAGTCTTCGTCTACGA+CGG + chr5_4:56627171-56627190 None:intergenic 45.0%
CTCTGGTACAAGATTGGACA+AGG - chr5_4:56627270-56627289 Msa0858800:intron 45.0%
CAACAATGGCGTAGACAGAT+TGG - chr5_4:56627341-56627360 Msa0858800:intron 45.0%
ACAATGGCGTAGACAGATTG+GGG - chr5_4:56627343-56627362 Msa0858800:intron 45.0%
CACACCTTCACAAAAGTGAG+TGG - chr5_4:56627507-56627526 Msa0858800:intron 45.0%
!! ACACCCACTCACTTTTGTGA+AGG + chr5_4:56626732-56626751 None:intergenic 45.0%
GTAACATGTCAACAGGCAAG+TGG - chr5_4:56627704-56627723 Msa0858800:intron 45.0%
AGGCAAGTGGCACATATCTT+TGG - chr5_4:56627717-56627736 Msa0858800:intron 45.0%
GTGGCACATATCTTTGGACA+TGG - chr5_4:56627723-56627742 Msa0858800:intron 45.0%
ACTCCAACTTCAAGCACACT+AGG - chr5_4:56628078-56628097 Msa0858800:CDS 45.0%
!! TATATATATATATATATATG+GGG - chr5_4:56626698-56626717 Msa0858800:intron 5.0%
!!! TTATTTATTTATTTGTTTTT+CGG + chr5_4:56627378-56627397 None:intergenic 5.0%
!! ATATATATATATATATATAG+GGG + chr5_4:56626479-56626498 None:intergenic 5.0%
GGCTATGTTTGGGCTTGAGA+AGG - chr5_4:56622326-56622345 Msa0858800:intron 50.0%
! TGGTGAGTTGAAGGAGGAAG+GGG + chr5_4:56623192-56623211 None:intergenic 50.0%
! GTGGTGAGTTGAAGGAGGAA+GGG + chr5_4:56623193-56623212 None:intergenic 50.0%
TGGAAAATTGGTGAAGGCGG+TGG + chr5_4:56623212-56623231 None:intergenic 50.0%
CGGTGGAAAATTGGTGAAGG+CGG + chr5_4:56623215-56623234 None:intergenic 50.0%
! ACCGCCGTTCACCAATTTTC+CGG - chr5_4:56623231-56623250 Msa0858800:intron 50.0%
GACGCCGGAAAATTGGTGAA+CGG + chr5_4:56623238-56623257 None:intergenic 50.0%
GAGAGAGAATAGATCGACGC+CGG + chr5_4:56623253-56623272 None:intergenic 50.0%
GTGTTCAACGGCGAGATTGA+CGG + chr5_4:56623373-56623392 None:intergenic 50.0%
TGAATCGCGTCCAACTGGTA+TGG - chr5_4:56623702-56623721 Msa0858800:intron 50.0%
GAATCGCGTCCAACTGGTAT+GGG - chr5_4:56623703-56623722 Msa0858800:intron 50.0%
ATCCCTCGAAAGAAGGTTGC+AGG - chr5_4:56624390-56624409 Msa0858800:intron 50.0%
AGCCTGCAACCTTCTTTCGA+GGG + chr5_4:56624395-56624414 None:intergenic 50.0%
TAGCCTGCAACCTTCTTTCG+AGG + chr5_4:56624396-56624415 None:intergenic 50.0%
TCGAAAGAAGGTTGCAGGCT+AGG - chr5_4:56624395-56624414 Msa0858800:intron 50.0%
CTGATCCCAGGAATCAAAGG+TGG - chr5_4:56624630-56624649 Msa0858800:intron 50.0%
CAGACCCACCTTTGATTCCT+GGG + chr5_4:56624638-56624657 None:intergenic 50.0%
ACAGACCCACCTTTGATTCC+TGG + chr5_4:56624639-56624658 None:intergenic 50.0%
AGCAGTGACACTTGCGTGTT+TGG - chr5_4:56624789-56624808 Msa0858800:intron 50.0%
GGTGTAACATGCTGCAACTC+AGG - chr5_4:56624810-56624829 Msa0858800:intron 50.0%
GGTCAAGGTTCTCTGCATCT+GGG + chr5_4:56625574-56625593 None:intergenic 50.0%
AGGTCAAGGTTCTCTGCATC+TGG + chr5_4:56625575-56625594 None:intergenic 50.0%
ATAGCAGAGACCAGATGTGC+AGG + chr5_4:56625689-56625708 None:intergenic 50.0%
! TGATGGAGCTTTTGCGAGAC+CGG - chr5_4:56626010-56626029 Msa0858800:intron 50.0%
TGCGGAGATCAGAGATGGAT+CGG - chr5_4:56626055-56626074 Msa0858800:intron 50.0%
GCAGGAAGGCAATGGAAATG+TGG + chr5_4:56627056-56627075 None:intergenic 50.0%
CAATGTTACGACGCAGATGC+TGG + chr5_4:56627314-56627333 None:intergenic 50.0%
CAATGGCGTAGACAGATTGG+GGG - chr5_4:56627344-56627363 Msa0858800:intron 50.0%
TAGACAGATTGGGGGAGAAC+AGG - chr5_4:56627352-56627371 Msa0858800:intron 50.0%
GTGCCTAGTGTGCTTGAAGT+TGG + chr5_4:56628084-56628103 None:intergenic 50.0%
CACCGCAGTTGGTCAATGAT+AGG - chr5_4:56628101-56628120 Msa0858800:CDS 50.0%
CGGTTAGCAGGCCCATTTAT+AGG - chr5_4:56628467-56628486 Msa0858800:intron 50.0%
TACAGTGGGAGTGGGAGAGA+AGG + chr5_4:56623160-56623179 None:intergenic 55.0%
GAAACGCGTACAGTGGGAGT+GGG + chr5_4:56623168-56623187 None:intergenic 55.0%
AGAAACGCGTACAGTGGGAG+TGG + chr5_4:56623169-56623188 None:intergenic 55.0%
AGGGGAGAAACGCGTACAGT+GGG + chr5_4:56623174-56623193 None:intergenic 55.0%
AAGGGGAGAAACGCGTACAG+TGG + chr5_4:56623175-56623194 None:intergenic 55.0%
! GGTGGTGAGTTGAAGGAGGA+AGG + chr5_4:56623194-56623213 None:intergenic 55.0%
! TGAAGGCGGTGGTGAGTTGA+AGG + chr5_4:56623201-56623220 None:intergenic 55.0%
CGGCGGTGGAAAATTGGTGA+AGG + chr5_4:56623218-56623237 None:intergenic 55.0%
GGTGAACGGCGGTGGAAAAT+TGG + chr5_4:56623224-56623243 None:intergenic 55.0%
GGAAAATTGGTGAACGGCGG+TGG + chr5_4:56623232-56623251 None:intergenic 55.0%
GCCGGAAAATTGGTGAACGG+CGG + chr5_4:56623235-56623254 None:intergenic 55.0%
CTCTCTGAATCGCGTCCAAC+TGG - chr5_4:56623697-56623716 Msa0858800:intron 55.0%
AAGTAGCAGGCCTGCACATC+TGG - chr5_4:56625676-56625695 Msa0858800:intron 55.0%
! AGCTTTTGCGAGACCGGAGA+TGG - chr5_4:56626016-56626035 Msa0858800:intron 55.0%
! GCTTTTGCGAGACCGGAGAT+GGG - chr5_4:56626017-56626036 Msa0858800:intron 55.0%
CTTGCTGCGGAGATCAGAGA+TGG - chr5_4:56626050-56626069 Msa0858800:intron 55.0%
CACAGCATGCAGGAAGGCAA+TGG + chr5_4:56627064-56627083 None:intergenic 55.0%
GAAGTCTTCGTCTACGACGG+AGG + chr5_4:56627168-56627187 None:intergenic 55.0%
! AGGCGGTGGTGAGTTGAAGG+AGG + chr5_4:56623198-56623217 None:intergenic 60.0%
TCATCTCTCTCACGGCGGTG+AGG + chr5_4:56627112-56627131 None:intergenic 60.0%
! AGCACACTAGGCACCGCAGT+TGG - chr5_4:56628090-56628109 Msa0858800:CDS 60.0%
GGCGACGACGGCGAGATTGA+CGG + chr5_4:56623352-56623371 None:intergenic 65.0%
GGCGAGATTGACGGCGACGA+CGG + chr5_4:56623364-56623383 None:intergenic 65.0%
AGACCGGAGATGGGTCGCGA+CGG - chr5_4:56626026-56626045 Msa0858800:intron 65.0%
AGTCCGTCGCGACCCATCTC+CGG + chr5_4:56626032-56626051 None:intergenic 65.0%
GACGGCGAGATTGACGGCGC+TGG + chr5_4:56623346-56623365 None:intergenic 70.0%
!! GGGTCGCGACGGACTTGCTG+CGG - chr5_4:56626037-56626056 Msa0858800:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 56621835 56629074 56621835 ID=Msa0858800;Name=Msa0858800
chr5_4 mRNA 56621835 56629074 56621835 ID=Msa0858800-mRNA-1;Parent=Msa0858800;Name=Msa0858800-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.5|0.55|1|0.5|0.44|9|819|199
chr5_4 exon 56621835 56622199 56621835 ID=Msa0858800-mRNA-1:exon:17314;Parent=Msa0858800-mRNA-1
chr5_4 exon 56622671 56622860 56622671 ID=Msa0858800-mRNA-1:exon:17313;Parent=Msa0858800-mRNA-1
chr5_4 exon 56624830 56624953 56624830 ID=Msa0858800-mRNA-1:exon:17312;Parent=Msa0858800-mRNA-1
chr5_4 exon 56625093 56625387 56625093 ID=Msa0858800-mRNA-1:exon:17311;Parent=Msa0858800-mRNA-1
chr5_4 exon 56626078 56626189 56626078 ID=Msa0858800-mRNA-1:exon:17310;Parent=Msa0858800-mRNA-1
chr5_4 exon 56627191 56627235 56627191 ID=Msa0858800-mRNA-1:exon:17309;Parent=Msa0858800-mRNA-1
chr5_4 exon 56628068 56628121 56628068 ID=Msa0858800-mRNA-1:exon:17308;Parent=Msa0858800-mRNA-1
chr5_4 exon 56628738 56628824 56628738 ID=Msa0858800-mRNA-1:exon:17307;Parent=Msa0858800-mRNA-1
chr5_4 exon 56628928 56629074 56628928 ID=Msa0858800-mRNA-1:exon:17306;Parent=Msa0858800-mRNA-1
chr5_4 CDS 56628928 56629074 56628928 ID=Msa0858800-mRNA-1:cds;Parent=Msa0858800-mRNA-1
chr5_4 CDS 56628738 56628824 56628738 ID=Msa0858800-mRNA-1:cds;Parent=Msa0858800-mRNA-1
chr5_4 CDS 56628068 56628121 56628068 ID=Msa0858800-mRNA-1:cds;Parent=Msa0858800-mRNA-1
chr5_4 CDS 56627191 56627235 56627191 ID=Msa0858800-mRNA-1:cds;Parent=Msa0858800-mRNA-1
chr5_4 CDS 56626078 56626189 56626078 ID=Msa0858800-mRNA-1:cds;Parent=Msa0858800-mRNA-1
chr5_4 CDS 56625233 56625387 56625233 ID=Msa0858800-mRNA-1:cds;Parent=Msa0858800-mRNA-1
chr5_4 three_prime_UTR 56625093 56625232 56625093 ID=Msa0858800-mRNA-1:three_prime_utr;Parent=Msa0858800-mRNA-1
chr5_4 three_prime_UTR 56624830 56624953 56624830 ID=Msa0858800-mRNA-1:three_prime_utr;Parent=Msa0858800-mRNA-1
chr5_4 three_prime_UTR 56622671 56622860 56622671 ID=Msa0858800-mRNA-1:three_prime_utr;Parent=Msa0858800-mRNA-1
chr5_4 three_prime_UTR 56621835 56622199 56621835 ID=Msa0858800-mRNA-1:three_prime_utr;Parent=Msa0858800-mRNA-1
Gene Sequence

>Msa0858800

ATGATCAATATGCTGTTCCTTTCCATGTTTTGGGTGGCTAACATTACTTCCCATCAAGTCGATAGTACCCAAATCACAGTGAAAGAGAAGTTGGACATAGAGAAAGAGCTAGAACTTATTAATAAGGCTCCTGTCAAGAGCATTCATACAAAATTTGGGTACATTGTTGATTGCATTGATATTAATAAGCAACCGGCCTTTGATCATCCTTTACTTATGAATCATAAGTTTCAGGTGGTTCCACAATTATACAACGATGATGCAACTCATTTGTTTGCAGTATGGACGGATGCAGATTGGGCTCAACAAGACTCTCTGAATCGCGTCCAACTGAGTTATTTAGTTTCAATGGCAATGCAAATTGAAAGTCTCCACACTCTTTACAAATTAATTACACTATGTAGCAGTGACACTTGCGTGTTTGGTGTAACATGCTGCAACTCAGAGAGTAAACAATCCTTGCTGAGAGTAAACTTCTTTGGTGCTAAAGATATCCCAGATGCAGAGAACCTTGACCTTCAAAAGTACAGTGAAACTGCTGAAATGCTCATGTGCAAGCTTCTACCTGATTCACCAACAACCACAACCAACAGAACTTAA
Protein sequence

>Msa0858800

MINMLFLSMFWVANITSHQVDSTQITVKEKLDIEKELELINKAPVKSIHTKFGYIVDCIDINKQPAFDHPLLMNHKFQVVPQLYNDDATHLFAVWTDADWAQQDSLNRVQLSYLVSMAMQIESLHTLYKLITLCSSDTCVFGVTCCNSESKQSLLRVNFFGAKDIPDAENLDLQKYSETAEMLMCKLLPDSPTTTTNRT*