AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0806280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806280 MtrunA17_Chr1g0170261 97.973 148 3 0 1 148 299 446 2.95e-98 306
Msa0806280 MtrunA17_Chr5g0439971 92.568 148 11 0 1 148 302 449 1.62e-93 293
Msa0806280 MtrunA17_Chr3g0119031 92.568 148 11 0 1 148 297 444 2.68e-93 292
Msa0806280 MtrunA17_Chr3g0138791 34.746 118 73 2 10 123 213 330 1.32e-12 64.7
Msa0806280 MtrunA17_Chr1g0148321 33.051 118 75 2 10 123 213 330 1.20e-11 62.0
Msa0806280 MtrunA17_Chr5g0427301 31.061 132 81 4 14 143 666 789 2.08e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806280 AT5G06600.3 89.189 148 16 0 1 148 297 444 4.16e-91 285
Msa0806280 AT5G06600.2 89.189 148 16 0 1 148 296 443 2.00e-90 285
Msa0806280 AT5G06600.1 89.189 148 16 0 1 148 297 444 2.13e-90 285
Msa0806280 AT3G11910.3 89.189 148 16 0 1 148 296 443 5.50e-90 284
Msa0806280 AT3G11910.1 89.189 148 16 0 1 148 296 443 5.50e-90 284
Msa0806280 AT3G11910.4 89.189 148 16 0 1 148 295 442 5.68e-90 284
Msa0806280 AT3G11910.2 89.189 148 16 0 1 148 295 442 5.68e-90 284
Msa0806280 AT3G49600.3 32.000 125 81 2 3 123 204 328 1.54e-12 65.1
Msa0806280 AT3G49600.2 32.000 125 81 2 3 123 204 328 1.54e-12 65.1
Msa0806280 AT3G49600.1 32.000 125 81 2 3 123 204 328 1.54e-12 65.1
Msa0806280 AT2G22310.2 28.455 123 87 1 10 131 130 252 8.79e-11 59.3
Msa0806280 AT2G22310.3 28.455 123 87 1 10 131 135 257 9.82e-11 59.3

Find 120 sgRNAs with CRISPR-Local

Find 787 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATCATTTCAATATTCTT+TGG 0.266276 5_3:+24561895 None:intergenic
TCACTATTGGTGGCTATAAA+TGG 0.267592 5_3:-24568235 Msa0806280:intron
AAAGAGTTAACCAAATCTTT+TGG 0.276067 5_3:-24563715 Msa0806280:five_prime_UTR
CCTTACAATTAGATCTTGAT+AGG 0.285562 5_3:-24562622 Msa0806280:CDS
TGACTAACCTTTCTGAAATA+AGG 0.285682 5_3:+24563918 None:intergenic
GCAACCACTTCTGTTTATAT+CGG 0.291404 5_3:-24561929 Msa0806280:three_prime_UTR
ATGATGTCTAAGAACTTAAC+AGG 0.300249 5_3:-24563663 Msa0806280:five_prime_UTR
GAATTCTGAAGACATAAATA+AGG 0.300558 5_3:-24557600 Msa0806280:three_prime_UTR
AAGAAGGGGAAGATGGGTTT+TGG 0.304871 5_3:+24569289 None:intergenic
AGACATAAATAAGGGTAATA+TGG 0.305906 5_3:-24557591 Msa0806280:three_prime_UTR
TTAGATCTTGATAGGGATAA+TGG 0.306686 5_3:-24562614 Msa0806280:CDS
CACCACCACTCCTCCGTTAG+AGG 0.318183 5_3:-24569136 Msa0806280:intron
CCATATGTACATATTTCTAT+TGG 0.319865 5_3:-24557633 Msa0806280:three_prime_UTR
TGCAGAGCAGTATGGTTTAC+AGG 0.343261 5_3:-24563195 Msa0806280:intron
TCTGATGCTGTTGTTGTTGA+AGG 0.347454 5_3:-24568862 Msa0806280:five_prime_UTR
AATACCTGTGAAGTGTATAA+AGG 0.350377 5_3:+24562552 None:intergenic
CAGCTTAACTGTGGTCAATC+AGG 0.357604 5_3:-24567993 Msa0806280:five_prime_UTR
GATGAATGCAAAATATTAGA+TGG 0.360835 5_3:+24561983 None:intergenic
TGCATTCAATATAGTTCATA+TGG 0.361714 5_3:+24563441 None:intergenic
TGTATCCCATCCAAAAGATT+TGG 0.366228 5_3:+24563705 None:intergenic
ATCTTATATATTAGTTAAGA+TGG 0.371000 5_3:-24561815 Msa0806280:three_prime_UTR
GATGCAGGTTCGATGCCTTA+TGG 0.373749 5_3:-24568037 Msa0806280:five_prime_UTR
GATGAAGCGAGCGAAGAAAC+TGG 0.382439 5_3:+24569180 None:intergenic
GTAAAGCTTGTGCACTTCAT+AGG 0.391326 5_3:-24562025 Msa0806280:three_prime_UTR
TTAATGCGCGTGAGAGTGAT+TGG 0.411208 5_3:-24564154 Msa0806280:five_prime_UTR
CAACCACTTCTGTTTATATC+GGG 0.418388 5_3:-24561928 Msa0806280:three_prime_UTR
ACAACAACAGCATCAGAGTT+AGG 0.423777 5_3:+24568868 None:intergenic
CCAATAGAAATATGTACATA+TGG 0.426098 5_3:+24557633 None:intergenic
CCTATCAAGATCTAATTGTA+AGG 0.427249 5_3:+24562622 None:intergenic
CGAATACTTCTATCTGCGTT+AGG 0.429494 5_3:+24562578 None:intergenic
ACATCGGAATAATGTTTCTT+CGG 0.432526 5_3:+24568260 None:intergenic
TAGATCTTGATAGGGATAAT+GGG 0.437845 5_3:-24562613 Msa0806280:CDS
CTCCTAACTGAACATGATAT+CGG 0.438360 5_3:-24562369 Msa0806280:three_prime_UTR
GCAGTTGAAGATCCGCCAAT+TGG 0.442781 5_3:-24568320 Msa0806280:five_prime_UTR
TTCCGATATCATGTTCAGTT+AGG 0.442966 5_3:+24562367 None:intergenic
TTCTTCAGCTTCAGTTAAAA+CGG 0.445451 5_3:-24563011 Msa0806280:CDS
TTAAGATGGATGGTAAGTTA+TGG 0.451746 5_3:-24561801 Msa0806280:three_prime_UTR
AAGTATCATGCAGAGCAGTA+TGG 0.452897 5_3:-24563203 Msa0806280:CDS
TAATGCGCGTGAGAGTGATT+GGG 0.455780 5_3:-24564153 Msa0806280:five_prime_UTR
TATATAGATGTTACAGATGC+AGG 0.456399 5_3:-24568052 Msa0806280:five_prime_UTR
ACTGAAAATGATATGCCATC+TGG 0.457124 5_3:-24563805 Msa0806280:five_prime_UTR
GCCATCTGGGAGCATCCCTC+TGG 0.463909 5_3:-24563791 Msa0806280:five_prime_UTR
TGTTCAGCATTGTTCCCCTT+CGG 0.468250 5_3:+24568085 None:intergenic
AGTAAATATTCCGTCAGAAA+AGG 0.469439 5_3:-24567965 Msa0806280:intron
TTTAACTGAAGCTGAAGAAC+AGG 0.471336 5_3:+24563015 None:intergenic
ATAAGCGAAGAAGGGGAAGA+TGG 0.472328 5_3:+24569282 None:intergenic
GTCCATGTGAATCTCCCAAT+TGG 0.481266 5_3:+24568305 None:intergenic
CAGTTGAAGATCCGCCAATT+GGG 0.486788 5_3:-24568319 Msa0806280:five_prime_UTR
TCACATTCCTTATTTCAGAA+AGG 0.489887 5_3:-24563925 Msa0806280:intron
TCATGTAACAAGTAGCTCCT+TGG 0.493061 5_3:+24563970 None:intergenic
TAAGCGAAGAAGGGGAAGAT+GGG 0.495142 5_3:+24569283 None:intergenic
GCATTACCTTCCATAGGTTG+AGG 0.497016 5_3:+24568838 None:intergenic
TGTTGAAGGTCCTCAACCTA+TGG 0.497121 5_3:-24568848 Msa0806280:five_prime_UTR
TATCTTACATGTGGCGATGT+AGG 0.501672 5_3:-24562080 Msa0806280:three_prime_UTR
AGTTGCGTTTACTACGGAAA+AGG 0.504159 5_3:+24569334 None:intergenic
TGCGCGAGACACTATGGTAA+AGG 0.504586 5_3:-24562974 Msa0806280:intron
GCCTTCAAACAACTTCTGTA+TGG 0.514735 5_3:+24563466 None:intergenic
CAGGTTCGATGCCTTATGGT+TGG 0.516574 5_3:-24568033 Msa0806280:five_prime_UTR
AGCATCAGTTGCGTTTACTA+CGG 0.521612 5_3:+24569328 None:intergenic
ATGAAGCGAGCGAAGAAACT+GGG 0.526969 5_3:+24569181 None:intergenic
TATATATTAGTTAAGATGGA+TGG 0.538285 5_3:-24561811 Msa0806280:three_prime_UTR
GCAACCTTTATACACTTCAC+AGG 0.539923 5_3:-24562556 Msa0806280:intron
ACCATACAGAAGTTGTTTGA+AGG 0.540530 5_3:-24563467 Msa0806280:CDS
AATTCTGAAGACATAAATAA+GGG 0.540626 5_3:-24557599 Msa0806280:three_prime_UTR
GCAAATCTAGTCCAACCATA+AGG 0.541036 5_3:+24568022 None:intergenic
CTTACAATTAGATCTTGATA+GGG 0.543468 5_3:-24562621 Msa0806280:CDS
CTGAAAATGATATGCCATCT+GGG 0.544979 5_3:-24563804 Msa0806280:five_prime_UTR
GGGGTTTGCGAATGATGAAA+GGG 0.545894 5_3:+24569201 None:intergenic
CATGATATCGGAAGCTGCAG+TGG 0.546090 5_3:-24562357 Msa0806280:three_prime_UTR
CTATCAAGATCTAATTGTAA+GGG 0.549176 5_3:+24562623 None:intergenic
TCGCCACATGTAAGATAGAC+AGG 0.550072 5_3:+24562086 None:intergenic
AACAAACTCTGTAATGCCAG+AGG 0.550134 5_3:+24563775 None:intergenic
TGGGGTTTGCGAATGATGAA+AGG 0.558121 5_3:+24569200 None:intergenic
GTGGAAGTAGAACAGCTTGA+GGG 0.565647 5_3:-24563233 Msa0806280:CDS
GATCTTCAGCTTGATGTCAA+AGG 0.567722 5_3:-24563290 Msa0806280:CDS
CACATTGCATTACCTTCCAT+AGG 0.574604 5_3:+24568832 None:intergenic
AACTGAAGCTGAAGAACAGG+TGG 0.576147 5_3:+24563018 None:intergenic
TTTCAGGGAACTGTTGTGGA+AGG 0.577078 5_3:-24563491 Msa0806280:intron
CGCCAATTGGGAGATTCACA+TGG 0.581165 5_3:-24568307 Msa0806280:five_prime_UTR
AATGCGCGTGAGAGTGATTG+GGG 0.581175 5_3:-24564152 Msa0806280:five_prime_UTR
TTTCAGAACAAATTAAGATG+GGG 0.584112 5_3:+24561850 None:intergenic
TCCACAACATAGCCTCTACT+AGG 0.596783 5_3:+24564092 None:intergenic
TTTCCCGATATAAACAGAAG+TGG 0.597045 5_3:+24561925 None:intergenic
GCGGATACTGATCTTTCCGA+AGG 0.601985 5_3:-24568101 Msa0806280:five_prime_UTR
CACAAGTACAGTGGATGCTG+TGG 0.605419 5_3:-24568342 Msa0806280:five_prime_UTR
AAAGCTAGAAGACAAAATGA+AGG 0.607281 5_3:-24563629 Msa0806280:intron
CGGATACTGATCTTTCCGAA+GGG 0.607412 5_3:-24568100 Msa0806280:five_prime_UTR
CATGTGAATCTCCCAATTGG+CGG 0.608755 5_3:+24568308 None:intergenic
TGTGGAAGTAGAACAGCTTG+AGG 0.609687 5_3:-24563234 Msa0806280:CDS
TACCTCTAACGGAGGAGTGG+TGG 0.610470 5_3:+24569134 None:intergenic
TATCAAGATCTAATTGTAAG+GGG 0.610556 5_3:+24562624 None:intergenic
GCCAGAGGGATGCTCCCAGA+TGG 0.612314 5_3:+24563790 None:intergenic
GGATCATACAATTCAGCAAG+AGG 0.617299 5_3:+24564113 None:intergenic
ACGCGATTGATTACCTCTAA+CGG 0.618741 5_3:+24569123 None:intergenic
AGTATATGCATCAGAAACAC+AGG 0.622310 5_3:+24557510 None:intergenic
ACAAACTCTGTAATGCCAGA+GGG 0.625922 5_3:+24563776 None:intergenic
TCCTAGTAGAGGCTATGTTG+TGG 0.625984 5_3:-24564093 Msa0806280:five_prime_UTR
GAAGGTCCTCAACCTATGGA+AGG 0.631259 5_3:-24568844 Msa0806280:intron
TCTAGCGGTGCGGATGCAAG+TGG 0.635527 5_3:+24562414 None:intergenic
TGCACAGTTCAGCTTAACTG+TGG 0.636127 5_3:-24568002 Msa0806280:five_prime_UTR
AGGAGTGGTGGTGATAGTCA+TGG 0.638641 5_3:+24569146 None:intergenic
TGTAGGCTTTGAAGAGACGT+TGG 0.640799 5_3:-24562063 Msa0806280:three_prime_UTR
GAATTGTATGATCCTAGTAG+AGG 0.640831 5_3:-24564104 Msa0806280:five_prime_UTR
GATTACCTCTAACGGAGGAG+TGG 0.641206 5_3:+24569131 None:intergenic
GTAGCAACAGAATCTTGAAG+TGG 0.641625 5_3:-24568908 Msa0806280:intron
CTATATTGAATGCATGAATG+TGG 0.644705 5_3:-24563432 Msa0806280:CDS
ATTCAATATAGTTCATATGG+TGG 0.646922 5_3:+24563444 None:intergenic
GGAGATTGATGCTCTTGCAG+AGG 0.647925 5_3:-24562336 Msa0806280:intron
AGCAGAAAACACAAGTACAG+TGG 0.653432 5_3:-24568351 Msa0806280:five_prime_UTR
CGATTGATTACCTCTAACGG+AGG 0.662494 5_3:+24569126 None:intergenic
ATACCTGTCTATCTTACATG+TGG 0.666277 5_3:-24562089 Msa0806280:three_prime_UTR
CACTGATGCATCTAGCGGTG+CGG 0.684294 5_3:+24562404 None:intergenic
GCCACCAATAGTGAAAACAT+CGG 0.685681 5_3:+24568244 None:intergenic
TGAAGCGAGCGAAGAAACTG+GGG 0.693799 5_3:+24569182 None:intergenic
ATTGTAAGGGGAACTCATAG+CGG 0.696550 5_3:+24562636 None:intergenic
AAATCAAAAGAAGAGAACAA+TGG 0.698409 5_3:+24557460 None:intergenic
CTTGACACTGATGCATCTAG+CGG 0.700615 5_3:+24562399 None:intergenic
GGATACTGATCTTTCCGAAG+GGG 0.700894 5_3:-24568099 Msa0806280:five_prime_UTR
TGATGTCTAAGAACTTAACA+GGG 0.721619 5_3:-24563662 Msa0806280:five_prime_UTR
GGAAGACAGATGCATACTTG+AGG 0.749512 5_3:-24564072 Msa0806280:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAAAAAAATAATA+AGG - chr5_3:24564280-24564299 Msa0806280:intron 0.0%
!! TAAATATTGAATATTATACA+TGG + chr5_3:24558589-24558608 None:intergenic 10.0%
!! ATTTATATTCAAAACTATTA+AGG - chr5_3:24559204-24559223 Msa0806280:intron 10.0%
!! TATGAACTAAATAAAAATTT+GGG - chr5_3:24559825-24559844 Msa0806280:intron 10.0%
!!! TTTAGTATTAAATTTTTTTG+TGG - chr5_3:24560578-24560597 Msa0806280:intron 10.0%
!! TTAATAATACAATTTATTTC+TGG - chr5_3:24562157-24562176 Msa0806280:intron 10.0%
!!! GTTAAAATAAAAAGTATAAA+TGG + chr5_3:24563875-24563894 None:intergenic 10.0%
!!! TATTAAACTAAAATCATTTT+CGG + chr5_3:24566625-24566644 None:intergenic 10.0%
!!! TATTAAACTAAAATCATTTT+CGG + chr5_3:24566625-24566644 None:intergenic 10.0%
!!! AGTGTCAATTTAATTTTTTT+AGG - chr5_3:24558319-24558338 Msa0806280:intron 15.0%
!!! GTGTCAATTTAATTTTTTTA+GGG - chr5_3:24558320-24558339 Msa0806280:intron 15.0%
!! TGTAAAAATTAAGAAATGAA+GGG - chr5_3:24558954-24558973 Msa0806280:intron 15.0%
!!! CTTTTGAAATTGATTTATTA+TGG - chr5_3:24559031-24559050 Msa0806280:intron 15.0%
!!! GTTTTGAATATAAATTTTCT+TGG + chr5_3:24559199-24559218 None:intergenic 15.0%
!! AAGAAATAAATCATACAATA+AGG - chr5_3:24559717-24559736 Msa0806280:intron 15.0%
!! GTATGAACTAAATAAAAATT+TGG - chr5_3:24559824-24559843 Msa0806280:intron 15.0%
!!! CTTTTTTCTCTTATATATTA+CGG - chr5_3:24560787-24560806 Msa0806280:intron 15.0%
!!! ACTTCTTTTTTTTTTTTTGA+GGG + chr5_3:24561254-24561273 None:intergenic 15.0%
!!! CAATAATAAATATCCATTTT+GGG - chr5_3:24563899-24563918 Msa0806280:intron 15.0%
!!! CTTTGTTGATTTTAAATATA+AGG - chr5_3:24564250-24564269 Msa0806280:intron 15.0%
!! ATCTTATATATTAGTTAAGA+TGG - chr5_3:24564954-24564973 Msa0806280:intron 15.0%
!! ATACAGTAAAATGAAATTAT+TGG - chr5_3:24565302-24565321 Msa0806280:intron 15.0%
!! ATATGATATATGAAACTATT+TGG - chr5_3:24565639-24565658 Msa0806280:intron 15.0%
!! ATATGATATATGAAACTATT+TGG - chr5_3:24565639-24565658 Msa0806280:intron 15.0%
!! ATATGATATATGAAACTATT+TGG - chr5_3:24565639-24565658 Msa0806280:intron 15.0%
!!! TACAAAATTTAAAACCAAAT+AGG + chr5_3:24566096-24566115 None:intergenic 15.0%
!! TACAAGTTTGATAAATATAA+AGG - chr5_3:24566172-24566191 Msa0806280:intron 15.0%
!!! AACCTATTTTGTTTTAAATT+TGG - chr5_3:24566384-24566403 Msa0806280:intron 15.0%
!!! TACCAAATTTAAAACAAAAT+AGG + chr5_3:24566389-24566408 None:intergenic 15.0%
!! TTGATTAGAAATTTGAAAAA+TGG - chr5_3:24566804-24566823 Msa0806280:intron 15.0%
!! TGATTAGAAATTTGAAAAAT+GGG - chr5_3:24566805-24566824 Msa0806280:intron 15.0%
!!! ATTTAGTAAAATGAAAGTAT+TGG - chr5_3:24567408-24567427 Msa0806280:intron 15.0%
!! ATATGATATATGAAACTATT+TGG - chr5_3:24565639-24565658 Msa0806280:intron 15.0%
!! ATATGATATATGAAACTATT+TGG - chr5_3:24565639-24565658 Msa0806280:intron 15.0%
!! ATATGATATATGAAACTATT+TGG - chr5_3:24565639-24565658 Msa0806280:intron 15.0%
!!! TACAAAATTTAAAACCAAAT+AGG + chr5_3:24566096-24566115 None:intergenic 15.0%
!! TACAAGTTTGATAAATATAA+AGG - chr5_3:24566172-24566191 Msa0806280:intron 15.0%
!!! TACCAAATTTAAAACAAAAT+AGG + chr5_3:24566389-24566408 None:intergenic 15.0%
!! TTGATTAGAAATTTGAAAAA+TGG - chr5_3:24566804-24566823 Msa0806280:intron 15.0%
!! TGATTAGAAATTTGAAAAAT+GGG - chr5_3:24566805-24566824 Msa0806280:intron 15.0%
!!! GAATTTTTGTGATTTTTTTG+TGG - chr5_3:24557828-24557847 Msa0806280:intron 20.0%
!!! TTTCTTTTGAATTCATGTTA+TGG - chr5_3:24558041-24558060 Msa0806280:intron 20.0%
!!! TTTTGTTATTGGAAATGTTA+GGG - chr5_3:24558064-24558083 Msa0806280:intron 20.0%
!!! ATTCTTTTGAATTCTTGTTA+TGG - chr5_3:24558167-24558186 Msa0806280:intron 20.0%
!! TTGATTATGTTGTATTTAAG+TGG - chr5_3:24558865-24558884 Msa0806280:intron 20.0%
!! GTGTAAAAATTAAGAAATGA+AGG - chr5_3:24558953-24558972 Msa0806280:intron 20.0%
!! TTATGTTATGTTGAAATACT+AGG - chr5_3:24559061-24559080 Msa0806280:intron 20.0%
!! AGATCATCAAAAATCTTATT+TGG - chr5_3:24559424-24559443 Msa0806280:intron 20.0%
!!! TATTTATTTAAACCGTTTTG+CGG + chr5_3:24559463-24559482 None:intergenic 20.0%
!! GAGAAAAAAGAAAAAAATAG+AGG - chr5_3:24559749-24559768 Msa0806280:intron 20.0%
!!! CATAAAAAGTACATTAAGAT+TGG - chr5_3:24559854-24559873 Msa0806280:intron 20.0%
!!! AGGAATTATCAATTTTTTAG+CGG + chr5_3:24559884-24559903 None:intergenic 20.0%
!!! AAAAGGTTTTAAGTGAATAT+CGG + chr5_3:24560357-24560376 None:intergenic 20.0%
!! TAAATTCCTATACAATATAG+CGG - chr5_3:24560678-24560697 Msa0806280:intron 20.0%
!! ATTGGATATTTAATAACACT+CGG - chr5_3:24560715-24560734 Msa0806280:intron 20.0%
!! ATATATAAGAGAAAAAAGCA+AGG + chr5_3:24560785-24560804 None:intergenic 20.0%
!! AACAAAAAAAAAATGAACAG+AGG - chr5_3:24561185-24561204 Msa0806280:intron 20.0%
!!! CACTTCTTTTTTTTTTTTTG+AGG + chr5_3:24561255-24561274 None:intergenic 20.0%
!! GTTATGTAACCAAAAAAAAA+AGG - chr5_3:24561322-24561341 Msa0806280:intron 20.0%
!! GAAATTCAGTAAAGAAAAAA+TGG + chr5_3:24562416-24562435 None:intergenic 20.0%
!!! TTTAATTTTTTTCCGAAAGA+AGG - chr5_3:24562889-24562908 Msa0806280:intron 20.0%
!! ATGTTTAATATTGTTTGTTC+AGG - chr5_3:24562921-24562940 Msa0806280:intron 20.0%
!!! ACAAGAAAAGAATCATTTTA+TGG - chr5_3:24563371-24563390 Msa0806280:intron 20.0%
!!! ATTTTATGGTAGGTATTTTT+TGG - chr5_3:24563385-24563404 Msa0806280:intron 20.0%
!! TGAAATAATTGAAATTCAGA+AGG + chr5_3:24563454-24563473 None:intergenic 20.0%
!! AAATATGAAGGAAAAATAGT+AGG + chr5_3:24563653-24563672 None:intergenic 20.0%
!!! TTTTCCTTCATATTTTAGAT+TGG - chr5_3:24563658-24563677 Msa0806280:five_prime_UTR 20.0%
!!! ATAACCAATCTAAAATATGA+AGG + chr5_3:24563665-24563684 None:intergenic 20.0%
!! CCAAAATGGATATTTATTAT+TGG + chr5_3:24563901-24563920 None:intergenic 20.0%
!!! CCAATAATAAATATCCATTT+TGG - chr5_3:24563898-24563917 Msa0806280:intron 20.0%
!! TTAATTCAGTGATTCATAAA+AGG + chr5_3:24564639-24564658 None:intergenic 20.0%
!! TGTATCATTTCAATATTCTT+TGG + chr5_3:24564877-24564896 None:intergenic 20.0%
!!! TTTTCAGAACAAATTAAGAT+GGG + chr5_3:24564923-24564942 None:intergenic 20.0%
!! TATATATTAGTTAAGATGGA+TGG - chr5_3:24564958-24564977 Msa0806280:intron 20.0%
!!! AATTCTGAAGACATAAATAA+GGG - chr5_3:24565077-24565096 Msa0806280:intron 20.0%
!!! TATATCATATTTTGCATCAA+GGG + chr5_3:24565629-24565648 None:intergenic 20.0%
!!! ATATATCATATTTTGCATCA+AGG + chr5_3:24565630-24565649 None:intergenic 20.0%
!!! AAACTATTTGGTTTTGTATT+CGG - chr5_3:24565651-24565670 Msa0806280:intron 20.0%
!!! TATATCATATTTTGCATCAA+GGG + chr5_3:24565629-24565648 None:intergenic 20.0%
!!! ATATATCATATTTTGCATCA+AGG + chr5_3:24565630-24565649 None:intergenic 20.0%
!!! AAACTATTTGGTTTTGTATT+CGG - chr5_3:24565651-24565670 Msa0806280:intron 20.0%
!!! TATATCATATTTTGCATCAA+GGG + chr5_3:24565629-24565648 None:intergenic 20.0%
!!! ATATATCATATTTTGCATCA+AGG + chr5_3:24565630-24565649 None:intergenic 20.0%
!!! AAACTATTTGGTTTTGTATT+CGG - chr5_3:24565651-24565670 Msa0806280:intron 20.0%
!! AACATAATATTGAACCTATT+TGG - chr5_3:24566079-24566098 Msa0806280:intron 20.0%
!! TAGAAGTTTGATAAATATGA+AGG - chr5_3:24566316-24566335 Msa0806280:intron 20.0%
!! TACAAAAATGATAAATGAGA+AGG - chr5_3:24566491-24566510 Msa0806280:intron 20.0%
!!! GAAGGTTTTAAAAGATAAAT+TGG - chr5_3:24566718-24566737 Msa0806280:intron 20.0%
!! ATAGTCTAAATTCAGTAAAT+TGG - chr5_3:24566880-24566899 Msa0806280:intron 20.0%
!! TTTATCAAACTTCAAAACAA+TGG + chr5_3:24566930-24566949 None:intergenic 20.0%
!! TGATACGAAAATTGATATTT+AGG - chr5_3:24566969-24566988 Msa0806280:intron 20.0%
!!! AATTCTGAAGACATAAATAA+GGG - chr5_3:24565077-24565096 Msa0806280:intron 20.0%
!!! TATATCATATTTTGCATCAA+GGG + chr5_3:24565629-24565648 None:intergenic 20.0%
!!! ATATATCATATTTTGCATCA+AGG + chr5_3:24565630-24565649 None:intergenic 20.0%
!!! AAACTATTTGGTTTTGTATT+CGG - chr5_3:24565651-24565670 Msa0806280:intron 20.0%
!!! TATATCATATTTTGCATCAA+GGG + chr5_3:24565629-24565648 None:intergenic 20.0%
!!! ATATATCATATTTTGCATCA+AGG + chr5_3:24565630-24565649 None:intergenic 20.0%
!!! AAACTATTTGGTTTTGTATT+CGG - chr5_3:24565651-24565670 Msa0806280:intron 20.0%
!!! TATATCATATTTTGCATCAA+GGG + chr5_3:24565629-24565648 None:intergenic 20.0%
!!! ATATATCATATTTTGCATCA+AGG + chr5_3:24565630-24565649 None:intergenic 20.0%
!!! AAACTATTTGGTTTTGTATT+CGG - chr5_3:24565651-24565670 Msa0806280:intron 20.0%
!! AACATAATATTGAACCTATT+TGG - chr5_3:24566079-24566098 Msa0806280:intron 20.0%
!! TAGAAGTTTGATAAATATGA+AGG - chr5_3:24566316-24566335 Msa0806280:intron 20.0%
!!! GACCTATTTTGTTTTAAATT+TGG - chr5_3:24568485-24568504 Msa0806280:intron 20.0%
!! TACAAAAATGATAAATGAGA+AGG - chr5_3:24566491-24566510 Msa0806280:intron 20.0%
!!! GAAGGTTTTAAAAGATAAAT+TGG - chr5_3:24566718-24566737 Msa0806280:intron 20.0%
!! ATAGTCTAAATTCAGTAAAT+TGG - chr5_3:24566880-24566899 Msa0806280:intron 20.0%
!! TTTATCAAACTTCAAAACAA+TGG + chr5_3:24566930-24566949 None:intergenic 20.0%
!! TGATACGAAAATTGATATTT+AGG - chr5_3:24566969-24566988 Msa0806280:intron 20.0%
!!! AATTCTGAAGACATAAATAA+GGG - chr5_3:24565077-24565096 Msa0806280:intron 20.0%
!!! TTTGTTTGATGATGATTACT+AGG - chr5_3:24557786-24557805 Msa0806280:intron 25.0%
!!! TTGTTTGATGATGATTACTA+GGG - chr5_3:24557787-24557806 Msa0806280:intron 25.0%
!!! TTTTTGGAGAAGAAGTTTAT+TGG - chr5_3:24557968-24557987 Msa0806280:intron 25.0%
!!! TCATGTTATGGTTTTGTTAT+TGG - chr5_3:24558053-24558072 Msa0806280:intron 25.0%
!!! GTTTTGTTATTGGAAATGTT+AGG - chr5_3:24558063-24558082 Msa0806280:intron 25.0%
!!! TTTGTTATTGGAAATGTTAG+GGG - chr5_3:24558065-24558084 Msa0806280:intron 25.0%
!!! TCTTGTTATGGTTTTGTTAT+TGG - chr5_3:24558179-24558198 Msa0806280:intron 25.0%
!! ATTTTTGTCCTTTTCGTATT+TGG - chr5_3:24558385-24558404 Msa0806280:intron 25.0%
! TCAATATTTATGCGTATCAT+AGG - chr5_3:24558599-24558618 Msa0806280:intron 25.0%
! CAATATTTATGCGTATCATA+GGG - chr5_3:24558600-24558619 Msa0806280:intron 25.0%
! AATATTTATGCGTATCATAG+GGG - chr5_3:24558601-24558620 Msa0806280:intron 25.0%
!!! TTATATTGATTTAAACGTGC+AGG - chr5_3:24558646-24558665 Msa0806280:intron 25.0%
! AAATGTTTGAGAACCTTAAT+AGG - chr5_3:24558925-24558944 Msa0806280:intron 25.0%
! TCTATATATATTGCTTTGAC+TGG - chr5_3:24559001-24559020 Msa0806280:intron 25.0%
! TTTCAACATAACATAACCTA+GGG + chr5_3:24559057-24559076 None:intergenic 25.0%
! ATTTCAACATAACATAACCT+AGG + chr5_3:24559058-24559077 None:intergenic 25.0%
! GATAACATTAGAGTAAGTTA+AGG - chr5_3:24559102-24559121 Msa0806280:intron 25.0%
!! AAATCTTATTTGGCAAATAG+TGG - chr5_3:24559434-24559453 Msa0806280:intron 25.0%
! TAGTTCATACAATTTCTCAT+CGG + chr5_3:24559814-24559833 None:intergenic 25.0%
! GTATCATAGCTTATCAATTT+GGG + chr5_3:24560165-24560184 None:intergenic 25.0%
!!! TCACTTAAAACCTTTTTTCA+TGG - chr5_3:24560361-24560380 Msa0806280:intron 25.0%
! AGATTGTTTGTTTAATAGCA+TGG - chr5_3:24560552-24560571 Msa0806280:intron 25.0%
! TTGGATATTTAATAACACTC+GGG - chr5_3:24560716-24560735 Msa0806280:intron 25.0%
! ATACTTCAATCACACTTAAT+TGG + chr5_3:24560882-24560901 None:intergenic 25.0%
!! TAAAAATACTAGGGACTTTT+GGG + chr5_3:24560970-24560989 None:intergenic 25.0%
!! ATTTTATGTGTGAATGTGTA+TGG + chr5_3:24561005-24561024 None:intergenic 25.0%
! TGTAACCAAAAAAAAAAGGA+TGG - chr5_3:24561326-24561345 Msa0806280:intron 25.0%
! AAAAAAAAAAGGATGGTAGT+GGG - chr5_3:24561333-24561352 Msa0806280:intron 25.0%
! AAATTTGATCTGAACAAAGT+GGG + chr5_3:24561369-24561388 None:intergenic 25.0%
! TAAATTTGATCTGAACAAAG+TGG + chr5_3:24561370-24561389 None:intergenic 25.0%
!! CATTCAGAATAATCTTTTGT+TGG - chr5_3:24562036-24562055 Msa0806280:three_prime_UTR 25.0%
! GAAGATAACATTTCTAATGT+CGG + chr5_3:24562117-24562136 None:intergenic 25.0%
! TCTTGAAAAGTGAACATTTA+TGG + chr5_3:24562310-24562329 None:intergenic 25.0%
!! AAAGAGTTAACCAAATCTTT+TGG - chr5_3:24563054-24563073 Msa0806280:CDS 25.0%
!!! TGAAGGTAAAGGTTTTTTAA+TGG - chr5_3:24563157-24563176 Msa0806280:intron 25.0%
!!! GTTTCTCATAGTTATTTTGT+AGG - chr5_3:24563182-24563201 Msa0806280:intron 25.0%
! ATTCAATATAGTTCATATGG+TGG + chr5_3:24563328-24563347 None:intergenic 25.0%
! TGCATTCAATATAGTTCATA+TGG + chr5_3:24563331-24563350 None:intergenic 25.0%
!! GAAAAGAATCATTTTATGGT+AGG - chr5_3:24563375-24563394 Msa0806280:intron 25.0%
!!! TAACCATGTATTTTAGCTTT+TGG - chr5_3:24563606-24563625 Msa0806280:intron 25.0%
!! ATGATTGTGATTTCATTTTC+AGG - chr5_3:24563696-24563715 Msa0806280:five_prime_UTR 25.0%
! ACAAGAATATAGAAAGTGAA+GGG + chr5_3:24563850-24563869 None:intergenic 25.0%
! TACAAGAATATAGAAAGTGA+AGG + chr5_3:24563851-24563870 None:intergenic 25.0%
! AAATATTTAAACACCAGAGT+AGG + chr5_3:24563974-24563993 None:intergenic 25.0%
!!! TTTGATGATTATTTTGCCAT+TGG - chr5_3:24564008-24564027 Msa0806280:five_prime_UTR 25.0%
! TATCAAGATCTAATTGTAAG+GGG + chr5_3:24564148-24564167 None:intergenic 25.0%
! CTATCAAGATCTAATTGTAA+GGG + chr5_3:24564149-24564168 None:intergenic 25.0%
! CTTACAATTAGATCTTGATA+GGG - chr5_3:24564148-24564167 Msa0806280:five_prime_UTR 25.0%
!!! TCTTCTTGAAATGTGTTTTT+TGG - chr5_3:24564604-24564623 Msa0806280:intron 25.0%
! GATGAATGCAAAATATTAGA+TGG + chr5_3:24564789-24564808 None:intergenic 25.0%
! TTTCAGAACAAATTAAGATG+GGG + chr5_3:24564922-24564941 None:intergenic 25.0%
!! CTTTTCAGAACAAATTAAGA+TGG + chr5_3:24564924-24564943 None:intergenic 25.0%
! CCAATAGAAATATGTACATA+TGG + chr5_3:24565046-24565065 None:intergenic 25.0%
!! CCATATGTACATATTTCTAT+TGG - chr5_3:24565043-24565062 Msa0806280:intron 25.0%
!! GAATTCTGAAGACATAAATA+AGG - chr5_3:24565076-24565095 Msa0806280:intron 25.0%
! AGACATAAATAAGGGTAATA+TGG - chr5_3:24565085-24565104 Msa0806280:intron 25.0%
! AAATCAAAAGAAGAGAACAA+TGG + chr5_3:24565219-24565238 None:intergenic 25.0%
! TACTGTATACAAAACCAAAT+AGG + chr5_3:24565290-24565309 None:intergenic 25.0%
!!! GGTAAAATGAAAGTATTAGA+AGG - chr5_3:24565455-24565474 Msa0806280:intron 25.0%
!! TTGCTATTCATCAAACTTAT+AGG + chr5_3:24565516-24565535 None:intergenic 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG + chr5_3:24565872-24565891 None:intergenic 25.0%
! TATGGTTAGAAGTTTGATAA+AGG - chr5_3:24565873-24565892 Msa0806280:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG + chr5_3:24565872-24565891 None:intergenic 25.0%
! TAGAAGTTTGATAAACATGA+AGG - chr5_3:24566024-24566043 Msa0806280:intron 25.0%
! AATATTATGTTACGCATCAA+AGG + chr5_3:24566070-24566089 None:intergenic 25.0%
!! AACCTATTTGGTTTCATATT+CGG - chr5_3:24566235-24566254 Msa0806280:intron 25.0%
!! ATTCGGTAAAATGAAAGTAT+TGG - chr5_3:24565451-24565470 Msa0806280:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG + chr5_3:24565872-24565891 None:intergenic 25.0%
! AATATCATGTTTCGCATAAA+GGG + chr5_3:24566362-24566381 None:intergenic 25.0%
! AAATATCATGTTTCGCATAA+AGG + chr5_3:24566363-24566382 None:intergenic 25.0%
!!! AAATGAGGTTTTAGCATTTA+TGG - chr5_3:24566467-24566486 Msa0806280:intron 25.0%
!!! GTTTTGAAGTTTGATAAAGA+AGG - chr5_3:24566932-24566951 Msa0806280:intron 25.0%
!!! TTGATATTTAGGACTAGTTA+TGG - chr5_3:24566980-24566999 Msa0806280:intron 25.0%
! CCAATAGAAATATGTACATA+TGG + chr5_3:24565046-24565065 None:intergenic 25.0%
!! CCATATGTACATATTTCTAT+TGG - chr5_3:24565043-24565062 Msa0806280:intron 25.0%
!! GAATTCTGAAGACATAAATA+AGG - chr5_3:24565076-24565095 Msa0806280:intron 25.0%
! AGACATAAATAAGGGTAATA+TGG - chr5_3:24565085-24565104 Msa0806280:intron 25.0%
! AAATCAAAAGAAGAGAACAA+TGG + chr5_3:24565219-24565238 None:intergenic 25.0%
! AAATCAAAAGAAGAGAACAA+TGG + chr5_3:24565219-24565238 None:intergenic 25.0%
!! TGTTCACATATCATGTTTTA+TGG + chr5_3:24567375-24567394 None:intergenic 25.0%
! ACATGATATGTGAACATATT+TGG - chr5_3:24567379-24567398 Msa0806280:intron 25.0%
!! TTGCTATTCATCAAACTTAT+AGG + chr5_3:24565516-24565535 None:intergenic 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
!! ATATCATATTTTGCATCAAG+GGG + chr5_3:24565628-24565647 None:intergenic 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG + chr5_3:24565872-24565891 None:intergenic 25.0%
! TATGGTTAGAAGTTTGATAA+AGG - chr5_3:24565873-24565892 Msa0806280:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG + chr5_3:24565872-24565891 None:intergenic 25.0%
! TATGGTTAGAAGTTTGATAA+AGG - chr5_3:24565873-24565892 Msa0806280:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:24565572-24565591 Msa0806280:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG + chr5_3:24565872-24565891 None:intergenic 25.0%
! TAGAAGTTTGATAAACATGA+AGG - chr5_3:24566024-24566043 Msa0806280:intron 25.0%
! AATATTATGTTACGCATCAA+AGG + chr5_3:24566070-24566089 None:intergenic 25.0%
!! AACCTATTTGGTTTCATATT+CGG - chr5_3:24566235-24566254 Msa0806280:intron 25.0%
!! ATTCGGTAAAATGAAAGTAT+TGG - chr5_3:24565451-24565470 Msa0806280:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG + chr5_3:24565872-24565891 None:intergenic 25.0%
! AATATCATGTTTCGCATAAA+GGG + chr5_3:24566362-24566381 None:intergenic 25.0%
! AAATATCATGTTTCGCATAA+AGG + chr5_3:24566363-24566382 None:intergenic 25.0%
! TTTATGCGAAACATGATATT+TGG - chr5_3:24566362-24566381 Msa0806280:intron 25.0%
!!! AAATGAGGTTTTAGCATTTA+TGG - chr5_3:24566467-24566486 Msa0806280:intron 25.0%
! AAAATCATATTTCGCATCAA+GGG + chr5_3:24568617-24568636 None:intergenic 25.0%
! AAAAATCATATTTCGCATCA+AGG + chr5_3:24568618-24568637 None:intergenic 25.0%
!!! ATTTTTAAGCTGAGTTTGTT+TGG - chr5_3:24568632-24568651 Msa0806280:intron 25.0%
!!! GTTTTGAAGTTTGATAAAGA+AGG - chr5_3:24566932-24566951 Msa0806280:intron 25.0%
!!! TTGATATTTAGGACTAGTTA+TGG - chr5_3:24566980-24566999 Msa0806280:intron 25.0%
! CCAATAGAAATATGTACATA+TGG + chr5_3:24565046-24565065 None:intergenic 25.0%
!! CCATATGTACATATTTCTAT+TGG - chr5_3:24565043-24565062 Msa0806280:intron 25.0%
!! GAATTCTGAAGACATAAATA+AGG - chr5_3:24565076-24565095 Msa0806280:intron 25.0%
! AGACATAAATAAGGGTAATA+TGG - chr5_3:24565085-24565104 Msa0806280:intron 25.0%
! AAATCAAAAGAAGAGAACAA+TGG + chr5_3:24565219-24565238 None:intergenic 25.0%
TGTGAATAATAAGCGAAGAA+GGG + chr5_3:24557498-24557517 None:intergenic 30.0%
ATGTGAATAATAAGCGAAGA+AGG + chr5_3:24557499-24557518 None:intergenic 30.0%
! TTACTAGGGTTTAAGATATC+TGG - chr5_3:24557801-24557820 Msa0806280:intron 30.0%
!!! GCAATGTGATGGTTATTTTT+TGG - chr5_3:24557952-24557971 Msa0806280:intron 30.0%
!! GGTGTCAACTTAATTTGTAA+CGG - chr5_3:24558108-24558127 Msa0806280:intron 30.0%
AAGGACAAAAATCAAACTAG+CGG + chr5_3:24558377-24558396 None:intergenic 30.0%
AACTACTACCAAATACGAAA+AGG + chr5_3:24558396-24558415 None:intergenic 30.0%
ACATCGGAATAATGTTTCTT+CGG + chr5_3:24558512-24558531 None:intergenic 30.0%
! TATTCCGATGTTTTCACTAT+TGG - chr5_3:24558521-24558540 Msa0806280:intron 30.0%
TATATAGATGTTACAGATGC+AGG - chr5_3:24558717-24558736 Msa0806280:intron 30.0%
AGTAAATATTCCGTCAGAAA+AGG - chr5_3:24558804-24558823 Msa0806280:intron 30.0%
! AGAAGAATAACCTTTTCTGA+CGG + chr5_3:24558817-24558836 None:intergenic 30.0%
! TTTTACACGAACTCCTATTA+AGG + chr5_3:24558941-24558960 None:intergenic 30.0%
ATTAAGAAATGAAGGGCAAT+AGG - chr5_3:24558961-24558980 Msa0806280:intron 30.0%
TTAAGAAATGAAGGGCAATA+GGG - chr5_3:24558962-24558981 Msa0806280:intron 30.0%
! AATTGATTTATTATGGCCCT+AGG - chr5_3:24559038-24559057 Msa0806280:intron 30.0%
TAGTTAAGGGATTAATCAGA+TGG - chr5_3:24559141-24559160 Msa0806280:intron 30.0%
CCAAACATGGAACTAATAAT+AGG + chr5_3:24559239-24559258 None:intergenic 30.0%
CCTATTATTAGTTCCATGTT+TGG - chr5_3:24559236-24559255 Msa0806280:intron 30.0%
TCAATTCTACCTTAAAGCTA+AGG - chr5_3:24559379-24559398 Msa0806280:intron 30.0%
CAATTCTACCTTAAAGCTAA+GGG - chr5_3:24559380-24559399 Msa0806280:intron 30.0%
TGATCTGATATAAGTAACAC+TGG + chr5_3:24559410-24559429 None:intergenic 30.0%
CTTCGATATTTCCAAAATAG+CGG + chr5_3:24559943-24559962 None:intergenic 30.0%
TCGAAGTTGCTAAATCATAT+CGG - chr5_3:24559957-24559976 Msa0806280:intron 30.0%
ATAACTCATCCTTACAAAAC+AGG - chr5_3:24560007-24560026 Msa0806280:intron 30.0%
! CTCTTTTCACAAATTCTCAT+CGG - chr5_3:24560051-24560070 Msa0806280:intron 30.0%
GGTATCATAGCTTATCAATT+TGG + chr5_3:24560166-24560185 None:intergenic 30.0%
!! ACGATTTTGACCATGAAAAA+AGG + chr5_3:24560374-24560393 None:intergenic 30.0%
! CTAAAAATACTAGGGACTTT+TGG + chr5_3:24560971-24560990 None:intergenic 30.0%
CTTGGAAGCTAAAAATACTA+GGG + chr5_3:24560979-24560998 None:intergenic 30.0%
ACTTGGAAGCTAAAAATACT+AGG + chr5_3:24560980-24560999 None:intergenic 30.0%
ATGTAGTGTTAAATGAACAG+AGG - chr5_3:24561155-24561174 Msa0806280:intron 30.0%
!!! CACTACCATCCTTTTTTTTT+TGG + chr5_3:24561334-24561353 None:intergenic 30.0%
CAAAAAAAAAAGGATGGTAG+TGG - chr5_3:24561332-24561351 Msa0806280:intron 30.0%
TCAGATCAAATTTAAACCGT+TGG - chr5_3:24561376-24561395 Msa0806280:intron 30.0%
ACATCGAAAACACCAAAAAA+CGG - chr5_3:24561472-24561491 Msa0806280:intron 30.0%
! TTTCTCATGTTTTCGTGTTT+TGG + chr5_3:24561541-24561560 None:intergenic 30.0%
TTACAATTGAGGTTATTCCA+TGG - chr5_3:24561725-24561744 Msa0806280:intron 30.0%
!!! TTTTTTTTATCACAGCCTTG+AGG - chr5_3:24561858-24561877 Msa0806280:three_prime_UTR 30.0%
!!! TTTTTTTATCACAGCCTTGA+GGG - chr5_3:24561859-24561878 Msa0806280:three_prime_UTR 30.0%
TAGTGTTAGATATCCAGTTT+GGG - chr5_3:24561906-24561925 Msa0806280:three_prime_UTR 30.0%
! TATAACATAGTTCTGTTGTG+TGG - chr5_3:24562225-24562244 Msa0806280:intron 30.0%
! TTATGGATTGTTGAGAGAAA+AGG + chr5_3:24562293-24562312 None:intergenic 30.0%
AGAACAGAAATACAAGGAAA+TGG + chr5_3:24562377-24562396 None:intergenic 30.0%
AAAGACAGAACAGAAATACA+AGG + chr5_3:24562383-24562402 None:intergenic 30.0%
!!! TCATGTTTTTTGTCTTTCTG+AGG - chr5_3:24562508-24562527 Msa0806280:intron 30.0%
! TGTGTTTCTGCAATATCAAA+AGG + chr5_3:24562587-24562606 None:intergenic 30.0%
AAAAAAGAAACTGGTTGTGT+CGG - chr5_3:24562767-24562786 Msa0806280:intron 30.0%
! TCACATTCCTTATTTCAGAA+AGG - chr5_3:24562844-24562863 Msa0806280:intron 30.0%
!! TGACTAACCTTTCTGAAATA+AGG + chr5_3:24562854-24562873 None:intergenic 30.0%
! AGTTAACCAAATCTTTTGGA+TGG - chr5_3:24563058-24563077 Msa0806280:intron 30.0%
! GTTAACCAAATCTTTTGGAT+GGG - chr5_3:24563059-24563078 Msa0806280:intron 30.0%
ATGATGTCTAAGAACTTAAC+AGG - chr5_3:24563106-24563125 Msa0806280:intron 30.0%
TGATGTCTAAGAACTTAACA+GGG - chr5_3:24563107-24563126 Msa0806280:intron 30.0%
AAAGCTAGAAGACAAAATGA+AGG - chr5_3:24563140-24563159 Msa0806280:intron 30.0%
AGAAGACAAAATGAAGGTAA+AGG - chr5_3:24563146-24563165 Msa0806280:intron 30.0%
GTCTCGAAGATTATTTATTG+AGG - chr5_3:24563247-24563266 Msa0806280:CDS 30.0%
CTATATTGAATGCATGAATG+TGG - chr5_3:24563337-24563356 Msa0806280:intron 30.0%
GAAGAATGATGTGTAAACAA+TGG + chr5_3:24563421-24563440 None:intergenic 30.0%
! TGCTTCTTTTGATAAGTATG+TGG - chr5_3:24563517-24563536 Msa0806280:intron 30.0%
CAACCAAAAGCTAAAATACA+TGG + chr5_3:24563612-24563631 None:intergenic 30.0%
TTCTTCAGCTTCAGTTAAAA+CGG - chr5_3:24563758-24563777 Msa0806280:five_prime_UTR 30.0%
GGTGAGAAACAAATATTACA+GGG + chr5_3:24563940-24563959 None:intergenic 30.0%
TGGTGAGAAACAAATATTAC+AGG + chr5_3:24563941-24563960 None:intergenic 30.0%
CAAAACAAAATCACATCCAA+TGG + chr5_3:24564027-24564046 None:intergenic 30.0%
!!! TGGATGTGATTTTGTTTTGT+TGG - chr5_3:24564028-24564047 Msa0806280:five_prime_UTR 30.0%
TCTGTTTGCAATCAAGTTAA+TGG + chr5_3:24564106-24564125 None:intergenic 30.0%
CCTATCAAGATCTAATTGTA+AGG + chr5_3:24564150-24564169 None:intergenic 30.0%
CCTTACAATTAGATCTTGAT+AGG - chr5_3:24564147-24564166 Msa0806280:five_prime_UTR 30.0%
TTAGATCTTGATAGGGATAA+TGG - chr5_3:24564155-24564174 Msa0806280:five_prime_UTR 30.0%
TAGATCTTGATAGGGATAAT+GGG - chr5_3:24564156-24564175 Msa0806280:five_prime_UTR 30.0%
AATACCTGTGAAGTGTATAA+AGG + chr5_3:24564220-24564239 None:intergenic 30.0%
CAGAAAATGAGAAAAACATG+AGG + chr5_3:24564548-24564567 None:intergenic 30.0%
! GTATTATTTGAAACTTCCCA+GGG + chr5_3:24564575-24564594 None:intergenic 30.0%
! AGTATTATTTGAAACTTCCC+AGG + chr5_3:24564576-24564595 None:intergenic 30.0%
TTAAGATGGATGGTAAGTTA+TGG - chr5_3:24564968-24564987 Msa0806280:intron 30.0%
ACATGATATGTGAACCTATT+TGG - chr5_3:24565273-24565292 Msa0806280:intron 30.0%
!! AAATCTCATTTTCGAGACAA+GGG + chr5_3:24565333-24565352 None:intergenic 30.0%
!! AAAATCTCATTTTCGAGACA+AGG + chr5_3:24565334-24565353 None:intergenic 30.0%
! TTGTCTCGAAAATGAGATTT+TGG - chr5_3:24565333-24565352 Msa0806280:intron 30.0%
! TGGCTACAAGTTTGATAATT+AGG - chr5_3:24565362-24565381 Msa0806280:intron 30.0%
ACATATCATGTTTCGCATTA+AGG + chr5_3:24565413-24565432 None:intergenic 30.0%
!!! ACCCTATTTGGTTTTGTATT+CGG - chr5_3:24565434-24565453 Msa0806280:intron 30.0%
ACCGAATACAAAACCAAATA+GGG + chr5_3:24565438-24565457 None:intergenic 30.0%
TACCGAATACAAAACCAAAT+AGG + chr5_3:24565439-24565458 None:intergenic 30.0%
TAGCCTATATGGTTAGATAA+AGG - chr5_3:24565583-24565602 Msa0806280:intron 30.0%
CAACCTTTATCTAACCATAT+AGG + chr5_3:24565589-24565608 None:intergenic 30.0%
TCGGTAAAATGTAAGTGTAT+TGG - chr5_3:24565670-24565689 Msa0806280:intron 30.0%
!! AAATCTCATTTTTGCGACAA+GGG + chr5_3:24565701-24565720 None:intergenic 30.0%
!! AAAATCTCATTTTTGCGACA+AGG + chr5_3:24565702-24565721 None:intergenic 30.0%
!! ATTTTAGCCTATATGGTTAG+AGG - chr5_3:24565579-24565598 Msa0806280:intron 30.0%
TATCAAACCTCTAACCATAT+AGG + chr5_3:24565727-24565746 None:intergenic 30.0%
TATGGTTAGAGGTTTGATAA+AGG - chr5_3:24565728-24565747 Msa0806280:intron 30.0%
! TCGGTAAAATGAAAGTGTAT+TGG - chr5_3:24565815-24565834 Msa0806280:intron 30.0%
!! AAATCTCATTTTTGCGACAA+GGG + chr5_3:24565701-24565720 None:intergenic 30.0%
!! AAAATCTCATTTTTGCGACA+AGG + chr5_3:24565702-24565721 None:intergenic 30.0%
! TCGGTAAAATGAAAGTGTAT+TGG - chr5_3:24565815-24565834 Msa0806280:intron 30.0%
!! AAATCTCATTTTTGCGACAA+GGG + chr5_3:24565701-24565720 None:intergenic 30.0%
!! AAAATCTCATTTTTGCGACA+AGG + chr5_3:24565702-24565721 None:intergenic 30.0%
ACATGATATGTGAACCTATT+TGG - chr5_3:24565273-24565292 Msa0806280:intron 30.0%
TACCGAATATGAAACCAAAT+AGG + chr5_3:24566240-24566259 None:intergenic 30.0%
AAACGAGAATTTAGCCTATA+TGG - chr5_3:24566292-24566311 Msa0806280:intron 30.0%
TTCGCATAAAGGGATATATA+GGG + chr5_3:24566352-24566371 None:intergenic 30.0%
TTTCGCATAAAGGGATATAT+AGG + chr5_3:24566353-24566372 None:intergenic 30.0%
GAAATCATATTTCGCATCAA+GGG + chr5_3:24566537-24566556 None:intergenic 30.0%
AGAAATCATATTTCGCATCA+AGG + chr5_3:24566538-24566557 None:intergenic 30.0%
! ATTTCTAAGCTGAGTTTGTT+TGG - chr5_3:24566552-24566571 Msa0806280:intron 30.0%
! AAACTGGAAGTATGAAAATG+TGG - chr5_3:24566583-24566602 Msa0806280:intron 30.0%
!! CTAAAATCATTTTCGGTTTG+AGG + chr5_3:24566618-24566637 None:intergenic 30.0%
ATGTGATATTTGAGCATAGA+AGG - chr5_3:24566700-24566719 Msa0806280:intron 30.0%
CTTCAAAACAATGGTCATAA+AGG + chr5_3:24566921-24566940 None:intergenic 30.0%
ATAAAGAAGGTTGAACTTGT+CGG - chr5_3:24566945-24566964 Msa0806280:intron 30.0%
AGTATATGCATCAAAAACAC+AGG + chr5_3:24567181-24567200 None:intergenic 30.0%
!! AAATCTCATTTTCGAGACAA+GGG + chr5_3:24565333-24565352 None:intergenic 30.0%
!! AAAATCTCATTTTCGAGACA+AGG + chr5_3:24565334-24565353 None:intergenic 30.0%
! TTGTCTCGAAAATGAGATTT+TGG - chr5_3:24565333-24565352 Msa0806280:intron 30.0%
! TGGCTACAAGTTTGATAATT+AGG - chr5_3:24565362-24565381 Msa0806280:intron 30.0%
CATATCATGTTTCGCATTAA+GGG + chr5_3:24565412-24565431 None:intergenic 30.0%
ACATATCATGTTTCGCATTA+AGG + chr5_3:24565413-24565432 None:intergenic 30.0%
!!! ACCCTATTTGGTTTTGTATT+CGG - chr5_3:24565434-24565453 Msa0806280:intron 30.0%
ACCGAATACAAAACCAAATA+GGG + chr5_3:24565438-24565457 None:intergenic 30.0%
TACCGAATACAAAACCAAAT+AGG + chr5_3:24565439-24565458 None:intergenic 30.0%
TAGCCTATATGGTTAGATAA+AGG - chr5_3:24565583-24565602 Msa0806280:intron 30.0%
CAACCTTTATCTAACCATAT+AGG + chr5_3:24565589-24565608 None:intergenic 30.0%
! TCGGTAAAATGAAAGTGTAT+TGG - chr5_3:24565815-24565834 Msa0806280:intron 30.0%
!! AAATCTCATTTTTGCGACAA+GGG + chr5_3:24565701-24565720 None:intergenic 30.0%
!! AAAATCTCATTTTTGCGACA+AGG + chr5_3:24565702-24565721 None:intergenic 30.0%
!! AGGCTAAAATCTCATTTTTG+CGG + chr5_3:24565707-24565726 None:intergenic 30.0%
! TCGGTAAAATGAAAGTGTAT+TGG - chr5_3:24565815-24565834 Msa0806280:intron 30.0%
!! AAATCTCATTTTTGCGACAA+GGG + chr5_3:24565701-24565720 None:intergenic 30.0%
!! AAAATCTCATTTTTGCGACA+AGG + chr5_3:24565702-24565721 None:intergenic 30.0%
ACATGATATGTGAACCTATT+TGG - chr5_3:24565273-24565292 Msa0806280:intron 30.0%
TACCGAATATGAAACCAAAT+AGG + chr5_3:24566240-24566259 None:intergenic 30.0%
!! AAACGAGATTTTAGCCTATA+TGG - chr5_3:24568393-24568412 Msa0806280:intron 30.0%
TTCGCATAAAGGGATATATA+GGG + chr5_3:24566352-24566371 None:intergenic 30.0%
TTTCGCATAAAGGGATATAT+AGG + chr5_3:24566353-24566372 None:intergenic 30.0%
! AAACTGGAAGTATGAAAATG+TGG - chr5_3:24566583-24566602 Msa0806280:intron 30.0%
!! CTAAAATCATTTTCGGTTTG+AGG + chr5_3:24566618-24566637 None:intergenic 30.0%
ATGTGATATTTGAGCATAGA+AGG - chr5_3:24566700-24566719 Msa0806280:intron 30.0%
CTTCAAAACAATGGTCATAA+AGG + chr5_3:24566921-24566940 None:intergenic 30.0%
ATAAAGAAGGTTGAACTTGT+CGG - chr5_3:24566945-24566964 Msa0806280:intron 30.0%
GTGAATAATAAGCGAAGAAG+GGG + chr5_3:24557497-24557516 None:intergenic 35.0%
ATGCGGAAATCGAAATCTTT+CGG + chr5_3:24557710-24557729 None:intergenic 35.0%
ATTGCAAGAACAACGAAATG+CGG + chr5_3:24557727-24557746 None:intergenic 35.0%
GATTTCAGTGAATGAATGTG+TGG - chr5_3:24558288-24558307 Msa0806280:intron 35.0%
! GGACTATTGACAATTTTTCG+AGG - chr5_3:24558483-24558502 Msa0806280:intron 35.0%
! TCACTATTGGTGGCTATAAA+TGG - chr5_3:24558534-24558553 Msa0806280:intron 35.0%
!! TATTGATTTAAACGTGCAGG+CGG - chr5_3:24558649-24558668 Msa0806280:intron 35.0%
!! TGAAATTTGCTCCCTTTTGT+GGG - chr5_3:24558897-24558916 Msa0806280:intron 35.0%
!! ACCCATTGATTCTGTAGTTA+AGG - chr5_3:24559127-24559146 Msa0806280:intron 35.0%
CCCTTAACTACAGAATCAAT+GGG + chr5_3:24559131-24559150 None:intergenic 35.0%
!! CCCATTGATTCTGTAGTTAA+GGG - chr5_3:24559128-24559147 Msa0806280:intron 35.0%
TCCCTTAACTACAGAATCAA+TGG + chr5_3:24559132-24559151 None:intergenic 35.0%
TTAAGGGATTAATCAGATGG+AGG - chr5_3:24559144-24559163 Msa0806280:intron 35.0%
! ATAGTCTATTTGCTAGACGT+TGG - chr5_3:24559167-24559186 Msa0806280:intron 35.0%
! TAGTCTATTTGCTAGACGTT+GGG - chr5_3:24559168-24559187 Msa0806280:intron 35.0%
GATTTGACCACACATTTGTT+AGG - chr5_3:24559292-24559311 Msa0806280:intron 35.0%
TTAGCTTCCAACTTCAACAT+TGG - chr5_3:24559342-24559361 Msa0806280:intron 35.0%
TTCCTCTATTCATGCCATTA+TGG - chr5_3:24559899-24559918 Msa0806280:intron 35.0%
TCCTCTATTCATGCCATTAT+GGG - chr5_3:24559900-24559919 Msa0806280:intron 35.0%
! CATATCGGTTATACCCATAA+TGG + chr5_3:24559916-24559935 None:intergenic 35.0%
! TTACAAAGGCCTGTTTTGTA+AGG + chr5_3:24560019-24560038 None:intergenic 35.0%
TTACAAAACAGGCCTTTGTA+AGG - chr5_3:24560018-24560037 Msa0806280:intron 35.0%
CGATGAGAATTTGTGAAAAG+AGG + chr5_3:24560053-24560072 None:intergenic 35.0%
ACCATGTTGAGATTGTATCT+CGG - chr5_3:24560183-24560202 Msa0806280:intron 35.0%
TGTATCTCGGTTGTTAATAG+CGG - chr5_3:24560196-24560215 Msa0806280:intron 35.0%
CATGGTCAAAATCGTACAAT+CGG - chr5_3:24560379-24560398 Msa0806280:intron 35.0%
CATTTCAGCATTGTTAACAG+AGG - chr5_3:24560646-24560665 Msa0806280:intron 35.0%
GCTATACCGCTATATTGTAT+AGG + chr5_3:24560687-24560706 None:intergenic 35.0%
ATAACACTCGGGTATATGTT+TGG - chr5_3:24560727-24560746 Msa0806280:intron 35.0%
TGTGAATGTGTATGGTAACT+TGG + chr5_3:24560997-24561016 None:intergenic 35.0%
TTAATACGGTGAGACAAAGT+GGG + chr5_3:24561289-24561308 None:intergenic 35.0%
ATTAATACGGTGAGACAAAG+TGG + chr5_3:24561290-24561309 None:intergenic 35.0%
TGTCTCACCGTATTAATAGA+TGG - chr5_3:24561293-24561312 Msa0806280:intron 35.0%
ACCGTATTAATAGATGGTAG+TGG - chr5_3:24561299-24561318 Msa0806280:intron 35.0%
CCCACTACCATCTATTAATA+CGG + chr5_3:24561303-24561322 None:intergenic 35.0%
CCGTATTAATAGATGGTAGT+GGG - chr5_3:24561300-24561319 Msa0806280:intron 35.0%
AAGACGAAAGAGAATATGGT+GGG + chr5_3:24561415-24561434 None:intergenic 35.0%
AACACGAAAACATGAGAAAG+CGG - chr5_3:24561542-24561561 Msa0806280:intron 35.0%
TGACTCTTCTTAAAGTAACC+CGG + chr5_3:24561757-24561776 None:intergenic 35.0%
GTAGTGTTAGATATCCAGTT+TGG - chr5_3:24561905-24561924 Msa0806280:three_prime_UTR 35.0%
! ATCTTTTGTTGGAACCTAAG+AGG - chr5_3:24562047-24562066 Msa0806280:three_prime_UTR 35.0%
GGAGAGTTGAATACTTATGT+TGG - chr5_3:24562448-24562467 Msa0806280:intron 35.0%
!! CTTTCTGAGGATAACTTGTT+TGG - chr5_3:24562521-24562540 Msa0806280:intron 35.0%
GAATTGTATGATCCTAGTAG+AGG - chr5_3:24562665-24562684 Msa0806280:intron 35.0%
TGCGCAAAAATCTTGATTAC+TGG - chr5_3:24562732-24562751 Msa0806280:intron 35.0%
GCGCAAAAATCTTGATTACT+GGG - chr5_3:24562733-24562752 Msa0806280:intron 35.0%
CGTGACTCAAAAAAAGAAAC+TGG - chr5_3:24562758-24562777 Msa0806280:intron 35.0%
! TTTCAGAAAGGTTAGTCAGT+AGG - chr5_3:24562856-24562875 Msa0806280:intron 35.0%
! TTCAGAAAGGTTAGTCAGTA+GGG - chr5_3:24562857-24562876 Msa0806280:intron 35.0%
CATAAGACACATCCTTCTTT+CGG + chr5_3:24562904-24562923 None:intergenic 35.0%
ACTGAAAATGATATGCCATC+TGG - chr5_3:24562964-24562983 Msa0806280:intron 35.0%
CTGAAAATGATATGCCATCT+GGG - chr5_3:24562965-24562984 Msa0806280:intron 35.0%
TGTATCCCATCCAAAAGATT+TGG + chr5_3:24563067-24563086 None:intergenic 35.0%
ACCATACAGAAGTTGTTTGA+AGG - chr5_3:24563302-24563321 Msa0806280:intron 35.0%
!!! GGTAGGTATTTTTTGGCTTT+AGG - chr5_3:24563392-24563411 Msa0806280:intron 35.0%
!! TCATTTTCAGGAAGCAAGAA+AGG - chr5_3:24563708-24563727 Msa0806280:five_prime_UTR 35.0%
!! CATTTTCAGGAAGCAAGAAA+GGG - chr5_3:24563709-24563728 Msa0806280:five_prime_UTR 35.0%
TTTAACTGAAGCTGAAGAAC+AGG + chr5_3:24563757-24563776 None:intergenic 35.0%
AAATTCACAGAAGCCCAAAA+TGG + chr5_3:24563915-24563934 None:intergenic 35.0%
TTAATGGCCATTACAGTTAC+AGG + chr5_3:24564090-24564109 None:intergenic 35.0%
CTCCTAACTGAACATGATAT+CGG - chr5_3:24564400-24564419 Msa0806280:intron 35.0%
TTCCGATATCATGTTCAGTT+AGG + chr5_3:24564405-24564424 None:intergenic 35.0%
ATACCTGTCTATCTTACATG+TGG - chr5_3:24564680-24564699 Msa0806280:intron 35.0%
GCAACCACTTCTGTTTATAT+CGG - chr5_3:24564840-24564859 Msa0806280:intron 35.0%
CAACCACTTCTGTTTATATC+GGG - chr5_3:24564841-24564860 Msa0806280:intron 35.0%
TTTCCCGATATAAACAGAAG+TGG + chr5_3:24564847-24564866 None:intergenic 35.0%
!!! TGGTAAGTTATGGTTTTAGC+AGG - chr5_3:24564978-24564997 Msa0806280:intron 35.0%
CTCTTATAGAGTAGATGCAT+CGG + chr5_3:24565178-24565197 None:intergenic 35.0%
GGTTCACATATCATGTTTCA+TGG + chr5_3:24565269-24565288 None:intergenic 35.0%
!! AAATGAGATTTTGGCCTACA+TGG - chr5_3:24565342-24565361 Msa0806280:intron 35.0%
TATCAAACTTGTAGCCATGT+AGG + chr5_3:24565359-24565378 None:intergenic 35.0%
TTCGCATTAAGGAACATCAA+GGG + chr5_3:24565402-24565421 None:intergenic 35.0%
TTTCGCATTAAGGAACATCA+AGG + chr5_3:24565403-24565422 None:intergenic 35.0%
ACATGATATGTGACCCTATT+TGG - chr5_3:24565422-24565441 Msa0806280:intron 35.0%
! AAAATCTCATTTTCGCGACA+AGG + chr5_3:24565483-24565502 None:intergenic 35.0%
! TTGTCGCGAAAATGAGATTT+TGG - chr5_3:24565482-24565501 Msa0806280:intron 35.0%
CATATCATGTTTCGCATCAA+GGG + chr5_3:24566213-24566232 None:intergenic 35.0%
ACATATCATGTTTCGCATCA+AGG + chr5_3:24566214-24566233 None:intergenic 35.0%
TTGTTTGGATTTCGCTAAAC+TGG - chr5_3:24566567-24566586 Msa0806280:intron 35.0%
!! AAATGAGATTTTGGCCTACA+TGG - chr5_3:24565342-24565361 Msa0806280:intron 35.0%
TATCAAACTTGTAGCCATGT+AGG + chr5_3:24565359-24565378 None:intergenic 35.0%
ACATGATATGTGACCCTATT+TGG - chr5_3:24565422-24565441 Msa0806280:intron 35.0%
! AAAATCTCATTTTCGCGACA+AGG + chr5_3:24565483-24565502 None:intergenic 35.0%
! TTGTCGCGAAAATGAGATTT+TGG - chr5_3:24565482-24565501 Msa0806280:intron 35.0%
! TCGGTAAACTGAAAGTGTAT+TGG - chr5_3:24567921-24567940 Msa0806280:intron 35.0%
!! GGCTAAAATCTCATTTTTGC+GGG + chr5_3:24565706-24565725 None:intergenic 35.0%
CATATCATGTTTCGCATCAA+GGG + chr5_3:24566213-24566232 None:intergenic 35.0%
ACATATCATGTTTCGCATCA+AGG + chr5_3:24566214-24566233 None:intergenic 35.0%
TTGTTTGGATTTCGCTAAAC+TGG - chr5_3:24566567-24566586 Msa0806280:intron 35.0%
AGTATATGCATCAGAAACAC+AGG + chr5_3:24567275-24567294 None:intergenic 35.0%
AGCATCAGTTGCGTTTACTA+CGG + chr5_3:24557444-24557463 None:intergenic 40.0%
ACGCGATTGATTACCTCTAA+CGG + chr5_3:24557649-24557668 None:intergenic 40.0%
GTAGCAACAGAATCTTGAAG+TGG - chr5_3:24557861-24557880 Msa0806280:intron 40.0%
ACAACAACAGCATCAGAGTT+AGG + chr5_3:24557904-24557923 None:intergenic 40.0%
! TCTGATGCTGTTGTTGTTGA+AGG - chr5_3:24557907-24557926 Msa0806280:intron 40.0%
CACATTGCATTACCTTCCAT+AGG + chr5_3:24557940-24557959 None:intergenic 40.0%
TGGAAGGTAATGCAATGTGA+TGG - chr5_3:24557941-24557960 Msa0806280:intron 40.0%
AGCAGAAAACACAAGTACAG+TGG - chr5_3:24558418-24558437 Msa0806280:intron 40.0%
! TCCGATGTTTTCACTATTGG+TGG - chr5_3:24558524-24558543 Msa0806280:intron 40.0%
GCCACCAATAGTGAAAACAT+CGG + chr5_3:24558528-24558547 None:intergenic 40.0%
GCAAATCTAGTCCAACCATA+AGG + chr5_3:24558750-24558769 None:intergenic 40.0%
!! CTGAAATTTGCTCCCTTTTG+TGG - chr5_3:24558896-24558915 Msa0806280:intron 40.0%
!! GAAATTTGCTCCCTTTTGTG+GGG - chr5_3:24558898-24558917 Msa0806280:intron 40.0%
ACATTTAGCACCCCACAAAA+GGG + chr5_3:24558911-24558930 None:intergenic 40.0%
AACATTTAGCACCCCACAAA+AGG + chr5_3:24558912-24558931 None:intergenic 40.0%
! AGTCTATTTGCTAGACGTTG+GGG - chr5_3:24559169-24559188 Msa0806280:intron 40.0%
TAACCCAAAGTGAATCTAGG+TGG + chr5_3:24559263-24559282 None:intergenic 40.0%
GACTAACCCAAAGTGAATCT+AGG + chr5_3:24559266-24559285 None:intergenic 40.0%
! GACCACACATTTGTTAGGTT+TGG - chr5_3:24559297-24559316 Msa0806280:intron 40.0%
AGCCAAACCTAACAAATGTG+TGG + chr5_3:24559302-24559321 None:intergenic 40.0%
GCAAGAACCAATGTTGAAGT+TGG + chr5_3:24559352-24559371 None:intergenic 40.0%
! AAATAGTGGAAGCCGCAAAA+CGG - chr5_3:24559448-24559467 Msa0806280:intron 40.0%
! TTCTCATCGGACTTTTGTCT+CGG + chr5_3:24559801-24559820 None:intergenic 40.0%
ACCCATAATGGCATGAATAG+AGG + chr5_3:24559904-24559923 None:intergenic 40.0%
CAAAATAGCGGCAAGCATAT+CGG + chr5_3:24559931-24559950 None:intergenic 40.0%
TTTGTATCGTCCGTTGAAGT+TGG - chr5_3:24559982-24560001 Msa0806280:intron 40.0%
TTGTATCGTCCGTTGAAGTT+GGG - chr5_3:24559983-24560002 Msa0806280:intron 40.0%
TGAGTTATGCCCAACTTCAA+CGG + chr5_3:24559995-24560014 None:intergenic 40.0%
TGAGAAAAGCCCAATAGTGT+AGG + chr5_3:24560082-24560101 None:intergenic 40.0%
ACCGAGATACAATCTCAACA+TGG + chr5_3:24560187-24560206 None:intergenic 40.0%
!!! GCATCGCGTTTTGTCATTTT+AGG + chr5_3:24560248-24560267 None:intergenic 40.0%
!! GTACCCTTCATCCTTTTTCA+CGG - chr5_3:24560427-24560446 Msa0806280:intron 40.0%
TGACCGTGAAAAAGGATGAA+GGG + chr5_3:24560433-24560452 None:intergenic 40.0%
TTGACCGTGAAAAAGGATGA+AGG + chr5_3:24560434-24560453 None:intergenic 40.0%
TCTTCTCTTGACCGTGAAAA+AGG + chr5_3:24560441-24560460 None:intergenic 40.0%
GATTGTACTGTGAAAAACCG+AGG - chr5_3:24560510-24560529 Msa0806280:intron 40.0%
TTTCATTCACTTCTCCTCCT+CGG + chr5_3:24560530-24560549 None:intergenic 40.0%
AACAATGCTGAAATGCAGCA+CGG + chr5_3:24560641-24560660 None:intergenic 40.0%
TATGTTTGGATGGAAGGTCT+TGG - chr5_3:24560741-24560760 Msa0806280:intron 40.0%
! TTTGGGAGGAGAATTTTGGA+GGG + chr5_3:24560953-24560972 None:intergenic 40.0%
!! TTTTGGGAGGAGAATTTTGG+AGG + chr5_3:24560954-24560973 None:intergenic 40.0%
!! GACTTTTGGGAGGAGAATTT+TGG + chr5_3:24560957-24560976 None:intergenic 40.0%
! AAATACTAGGGACTTTTGGG+AGG + chr5_3:24560967-24560986 None:intergenic 40.0%
GGGATTGAAGATTGATCCAA+CGG + chr5_3:24561395-24561414 None:intergenic 40.0%
GAAGACGAAAGAGAATATGG+TGG + chr5_3:24561416-24561435 None:intergenic 40.0%
GAGGAAGACGAAAGAGAATA+TGG + chr5_3:24561419-24561438 None:intergenic 40.0%
!!! GGTGTTTTCGATGTTGTTTC+CGG + chr5_3:24561466-24561485 None:intergenic 40.0%
!! CTCATGTTTTCGTGTTTTGG+AGG + chr5_3:24561538-24561557 None:intergenic 40.0%
GACAACAGAGGTTACAATTG+AGG - chr5_3:24561714-24561733 Msa0806280:intron 40.0%
GACTCTTCTTAAAGTAACCC+GGG + chr5_3:24561756-24561775 None:intergenic 40.0%
!! TGATGTGACCAGTTTGTTAC+AGG - chr5_3:24561974-24561993 Msa0806280:three_prime_UTR 40.0%
TGTTGGAACCTAAGAGGTTT+AGG - chr5_3:24562053-24562072 Msa0806280:three_prime_UTR 40.0%
TCTCTCTTCCTAAACCTCTT+AGG + chr5_3:24562064-24562083 None:intergenic 40.0%
AGAGAGACATGTCTCTTCTT+TGG - chr5_3:24562079-24562098 Msa0806280:three_prime_UTR 40.0%
GAGAGACATGTCTCTTCTTT+GGG - chr5_3:24562080-24562099 Msa0806280:three_prime_UTR 40.0%
AGAGACATGTCTCTTCTTTG+GGG - chr5_3:24562081-24562100 Msa0806280:three_prime_UTR 40.0%
GGATCATACAATTCAGCAAG+AGG + chr5_3:24562659-24562678 None:intergenic 40.0%
!! TGTGTCGGTTTGAAAAACCA+AGG - chr5_3:24562782-24562801 Msa0806280:intron 40.0%
TCATGTAACAAGTAGCTCCT+TGG + chr5_3:24562802-24562821 None:intergenic 40.0%
! GGCATATCATTTTCAGTCGT+GGG + chr5_3:24562961-24562980 None:intergenic 40.0%
! TGGCATATCATTTTCAGTCG+TGG + chr5_3:24562962-24562981 None:intergenic 40.0%
ACAAACTCTGTAATGCCAGA+GGG + chr5_3:24562996-24563015 None:intergenic 40.0%
AACAAACTCTGTAATGCCAG+AGG + chr5_3:24562997-24563016 None:intergenic 40.0%
!! TATTGAGGCTTCCACTTTTC+AGG - chr5_3:24563262-24563281 Msa0806280:CDS 40.0%
!! ATTGAGGCTTCCACTTTTCA+GGG - chr5_3:24563263-24563282 Msa0806280:CDS 40.0%
GCCTTCAAACAACTTCTGTA+TGG + chr5_3:24563306-24563325 None:intergenic 40.0%
GATCTTCAGCTTGATGTCAA+AGG - chr5_3:24563479-24563498 Msa0806280:CDS 40.0%
AAGTATCATGCAGAGCAGTA+TGG - chr5_3:24563566-24563585 Msa0806280:intron 40.0%
CCAGAGTAGGAAAAGAAGTT+TGG + chr5_3:24563961-24563980 None:intergenic 40.0%
! CCAAACTTCTTTTCCTACTC+TGG - chr5_3:24563958-24563977 Msa0806280:five_prime_UTR 40.0%
ATTGTAAGGGGAACTCATAG+CGG + chr5_3:24564136-24564155 None:intergenic 40.0%
CGAATACTTCTATCTGCGTT+AGG + chr5_3:24564194-24564213 None:intergenic 40.0%
GCAACCTTTATACACTTCAC+AGG - chr5_3:24564213-24564232 Msa0806280:intron 40.0%
TGCAGGCATAAGTTGTCAAT+CGG - chr5_3:24564475-24564494 Msa0806280:intron 40.0%
CATAAGTTGTCAATCGGAAG+TGG - chr5_3:24564481-24564500 Msa0806280:intron 40.0%
CAACTTAGCTATCTCTGACT+CGG + chr5_3:24564525-24564544 None:intergenic 40.0%
! TTCTCATTTTCTGACTTCCC+TGG - chr5_3:24564555-24564574 Msa0806280:intron 40.0%
! TCTCATTTTCTGACTTCCCT+GGG - chr5_3:24564556-24564575 Msa0806280:intron 40.0%
TATCTTACATGTGGCGATGT+AGG - chr5_3:24564689-24564708 Msa0806280:intron 40.0%
GTAAAGCTTGTGCACTTCAT+AGG - chr5_3:24564744-24564763 Msa0806280:intron 40.0%
! AAAATCTCGTTTTCGCAGCA+AGG + chr5_3:24566140-24566159 None:intergenic 40.0%
TATAAAGGTTGAACCCTCGA+TGG - chr5_3:24566187-24566206 Msa0806280:intron 40.0%
! AATTCTCGTTTTCGCGACAA+AGG + chr5_3:24566283-24566302 None:intergenic 40.0%
! GTTTCCAATTTTCGCGTCAA+GGG + chr5_3:24566784-24566803 None:intergenic 40.0%
! AGTTTCCAATTTTCGCGTCA+AGG + chr5_3:24566785-24566804 None:intergenic 40.0%
TTCACATCAACTGACATCGA+GGG + chr5_3:24566845-24566864 None:intergenic 40.0%
TTTCACATCAACTGACATCG+AGG + chr5_3:24566846-24566865 None:intergenic 40.0%
!!! GGACTAGTTATGGTTTTAGC+AGG - chr5_3:24566990-24567009 Msa0806280:intron 40.0%
TTCGCATTAAGGGACATCAA+GGG + chr5_3:24567508-24567527 None:intergenic 40.0%
TTTCGCATTAAGGGACATCA+AGG + chr5_3:24567509-24567528 None:intergenic 40.0%
! AAAATCTCGTTTTCGCAGCA+AGG + chr5_3:24566140-24566159 None:intergenic 40.0%
TATAAAGGTTGAACCCTCGA+TGG - chr5_3:24566187-24566206 Msa0806280:intron 40.0%
! AAATCTCGTTTTCGCGACAA+GGG + chr5_3:24568384-24568403 None:intergenic 40.0%
! AAAATCTCGTTTTCGCGACA+AGG + chr5_3:24568385-24568404 None:intergenic 40.0%
TGATTCTTGTCGCGAAAATG+AGG - chr5_3:24568532-24568551 Msa0806280:intron 40.0%
! GTTTCCAATTTTCGCGTCAA+GGG + chr5_3:24566784-24566803 None:intergenic 40.0%
! AGTTTCCAATTTTCGCGTCA+AGG + chr5_3:24566785-24566804 None:intergenic 40.0%
TTCACATCAACTGACATCGA+GGG + chr5_3:24566845-24566864 None:intergenic 40.0%
TTTCACATCAACTGACATCG+AGG + chr5_3:24566846-24566865 None:intergenic 40.0%
!!! GGACTAGTTATGGTTTTAGC+AGG - chr5_3:24566990-24567009 Msa0806280:intron 40.0%
!!! GGGAAGATGGGTTTTGGTTT+GGG + chr5_3:24557477-24557496 None:intergenic 45.0%
!! AAGAAGGGGAAGATGGGTTT+TGG + chr5_3:24557483-24557502 None:intergenic 45.0%
TAAGCGAAGAAGGGGAAGAT+GGG + chr5_3:24557489-24557508 None:intergenic 45.0%
ATAAGCGAAGAAGGGGAAGA+TGG + chr5_3:24557490-24557509 None:intergenic 45.0%
GGGGTTTGCGAATGATGAAA+GGG + chr5_3:24557571-24557590 None:intergenic 45.0%
TGGGGTTTGCGAATGATGAA+AGG + chr5_3:24557572-24557591 None:intergenic 45.0%
ATGAAGCGAGCGAAGAAACT+GGG + chr5_3:24557591-24557610 None:intergenic 45.0%
CGATTGATTACCTCTAACGG+AGG + chr5_3:24557646-24557665 None:intergenic 45.0%
TGTTGAAGGTCCTCAACCTA+TGG - chr5_3:24557921-24557940 Msa0806280:intron 45.0%
GCATTACCTTCCATAGGTTG+AGG + chr5_3:24557934-24557953 None:intergenic 45.0%
GATGAATGTGCGCAACGAAA+TGG - chr5_3:24558087-24558106 Msa0806280:intron 45.0%
CAGTTGAAGATCCGCCAATT+GGG - chr5_3:24558450-24558469 Msa0806280:intron 45.0%
CATGTGAATCTCCCAATTGG+CGG + chr5_3:24558464-24558483 None:intergenic 45.0%
GTCCATGTGAATCTCCCAAT+TGG + chr5_3:24558467-24558486 None:intergenic 45.0%
TGGATTAACAGCGTCAGAAG+TGG + chr5_3:24558569-24558588 None:intergenic 45.0%
CGGATACTGATCTTTCCGAA+GGG - chr5_3:24558669-24558688 Msa0806280:intron 45.0%
GGATACTGATCTTTCCGAAG+GGG - chr5_3:24558670-24558689 Msa0806280:intron 45.0%
TGTTCAGCATTGTTCCCCTT+CGG + chr5_3:24558687-24558706 None:intergenic 45.0%
TGCACAGTTCAGCTTAACTG+TGG - chr5_3:24558767-24558786 Msa0806280:intron 45.0%
CAGCTTAACTGTGGTCAATC+AGG - chr5_3:24558776-24558795 Msa0806280:intron 45.0%
AATGAAGGGCAATAGGGTCT+TGG - chr5_3:24558968-24558987 Msa0806280:intron 45.0%
GAATCTAGGTGGTCCAAACA+TGG + chr5_3:24559252-24559271 None:intergenic 45.0%
TGGACCACCTAGATTCACTT+TGG - chr5_3:24559256-24559275 Msa0806280:intron 45.0%
GGACCACCTAGATTCACTTT+GGG - chr5_3:24559257-24559276 Msa0806280:intron 45.0%
!! CTGGCATACCCTTAGCTTTA+AGG + chr5_3:24559391-24559410 None:intergenic 45.0%
! TCTCATCGGACTTTTGTCTC+GGG + chr5_3:24559800-24559819 None:intergenic 45.0%
! CGATATGCTTGCCGCTATTT+TGG - chr5_3:24559929-24559948 Msa0806280:intron 45.0%
AAACAGGCCTTTGTAAGGTG+AGG - chr5_3:24560023-24560042 Msa0806280:intron 45.0%
AGGTACTCCTCACCTTACAA+AGG + chr5_3:24560033-24560052 None:intergenic 45.0%
ATCGGAGAGTCCTACACTAT+TGG - chr5_3:24560069-24560088 Msa0806280:intron 45.0%
TCGGAGAGTCCTACACTATT+GGG - chr5_3:24560070-24560089 Msa0806280:intron 45.0%
!! GCTTGGTGCGTGTGTATAAT+TGG - chr5_3:24560132-24560151 Msa0806280:intron 45.0%
GGTGCGTGTGTATAATTGGT+CGG - chr5_3:24560136-24560155 Msa0806280:intron 45.0%
TGTACTGTGAAAAACCGAGG+AGG - chr5_3:24560513-24560532 Msa0806280:intron 45.0%
GAGGAGGAGAAGTGAATGAA+AGG - chr5_3:24560529-24560548 Msa0806280:intron 45.0%
!! GCGGTATAGCGCTGATATAT+TGG - chr5_3:24560697-24560716 Msa0806280:intron 45.0%
CACTCGGGTATATGTTTGGA+TGG - chr5_3:24560731-24560750 Msa0806280:intron 45.0%
CGGGTATATGTTTGGATGGA+AGG - chr5_3:24560735-24560754 Msa0806280:intron 45.0%
TTTGGATGGAAGGTCTTGGA+GGG - chr5_3:24560745-24560764 Msa0806280:intron 45.0%
!! TTGGGAGGAGAATTTTGGAG+GGG + chr5_3:24560952-24560971 None:intergenic 45.0%
AACACCAAAAAACGGCCGTT+TGG - chr5_3:24561480-24561499 Msa0806280:intron 45.0%
!!! CGTGTTTTGGAGGTTGTTTC+CGG + chr5_3:24561528-24561547 None:intergenic 45.0%
TTTGTGGAATGCGGGAATAG+CGG + chr5_3:24561613-24561632 None:intergenic 45.0%
GTAACCTCTGTTGTCAAACG+CGG + chr5_3:24561709-24561728 None:intergenic 45.0%
GTCACAAAGATCTCTTCCTC+TGG - chr5_3:24561773-24561792 Msa0806280:intron 45.0%
AGATCTCTTCCTCTGGTCAT+AGG - chr5_3:24561780-24561799 Msa0806280:intron 45.0%
! CAAAAATAGCCTTGCCCTCA+AGG + chr5_3:24561876-24561895 None:intergenic 45.0%
!!! GGGCAAGGCTATTTTTGTAG+CGG - chr5_3:24561879-24561898 Msa0806280:three_prime_UTR 45.0%
!!! AAGGCTATTTTTGTAGCGGC+AGG - chr5_3:24561883-24561902 Msa0806280:three_prime_UTR 45.0%
!! AAGTGGGCTGGATAGGAAAT+GGG - chr5_3:24561941-24561960 Msa0806280:three_prime_UTR 45.0%
!! TGTGACCAGTTTGTTACAGG+AGG - chr5_3:24561977-24561996 Msa0806280:three_prime_UTR 45.0%
!! CAGTTTGTTACAGGAGGATC+CGG - chr5_3:24561983-24562002 Msa0806280:three_prime_UTR 45.0%
!! AGTTTGTTACAGGAGGATCC+GGG - chr5_3:24561984-24562003 Msa0806280:three_prime_UTR 45.0%
TTAATGCGCGTGAGAGTGAT+TGG - chr5_3:24562615-24562634 Msa0806280:CDS 45.0%
TAATGCGCGTGAGAGTGATT+GGG - chr5_3:24562616-24562635 Msa0806280:CDS 45.0%
TCCTAGTAGAGGCTATGTTG+TGG - chr5_3:24562676-24562695 Msa0806280:intron 45.0%
TCCACAACATAGCCTCTACT+AGG + chr5_3:24562680-24562699 None:intergenic 45.0%
GGAAGACAGATGCATACTTG+AGG - chr5_3:24562697-24562716 Msa0806280:intron 45.0%
CACAACAGTTCCCTGAAAAG+TGG + chr5_3:24563276-24563295 None:intergenic 45.0%
!! CACTTTTCAGGGAACTGTTG+TGG - chr5_3:24563274-24563293 Msa0806280:CDS 45.0%
TTTCAGGGAACTGTTGTGGA+AGG - chr5_3:24563278-24563297 Msa0806280:CDS 45.0%
TGTGGAAGTAGAACAGCTTG+AGG - chr5_3:24563535-24563554 Msa0806280:intron 45.0%
GTGGAAGTAGAACAGCTTGA+GGG - chr5_3:24563536-24563555 Msa0806280:intron 45.0%
TGCAGAGCAGTATGGTTTAC+AGG - chr5_3:24563574-24563593 Msa0806280:intron 45.0%
AACTGAAGCTGAAGAACAGG+TGG + chr5_3:24563754-24563773 None:intergenic 45.0%
! TGATTTTGCGCGAGACACTA+TGG - chr5_3:24563789-24563808 Msa0806280:five_prime_UTR 45.0%
TTCGACGCCTGTAACTGTAA+TGG - chr5_3:24564080-24564099 Msa0806280:five_prime_UTR 45.0%
CTTGACACTGATGCATCTAG+CGG + chr5_3:24564373-24564392 None:intergenic 45.0%
! AGTACTGAAACTGAAGCTGC+AGG - chr5_3:24564458-24564477 Msa0806280:intron 45.0%
TTGTCAATCGGAAGTGGAGA+TGG - chr5_3:24564487-24564506 Msa0806280:intron 45.0%
TCGCCACATGTAAGATAGAC+AGG + chr5_3:24564686-24564705 None:intergenic 45.0%
!! TGTAGGCTTTGAAGAGACGT+TGG - chr5_3:24564706-24564725 Msa0806280:intron 45.0%
AGTAGATGCATCGGAAACAC+AGG + chr5_3:24565169-24565188 None:intergenic 45.0%
CGCATCATGTTTCGCATCAA+GGG + chr5_3:24565551-24565570 None:intergenic 45.0%
TCGCATCATGTTTCGCATCA+AGG + chr5_3:24565552-24565571 None:intergenic 45.0%
TTTGCATCAAGGGACATCGA+GGG + chr5_3:24565619-24565638 None:intergenic 45.0%
! TTTTGCATCAAGGGACATCG+AGG + chr5_3:24565620-24565639 None:intergenic 45.0%
TTTGCATCAAGGGACATCGA+GGG + chr5_3:24565619-24565638 None:intergenic 45.0%
! TTTTGCATCAAGGGACATCG+AGG + chr5_3:24565620-24565639 None:intergenic 45.0%
TTTGCATCAAGGGACATCGA+GGG + chr5_3:24565619-24565638 None:intergenic 45.0%
! TTTTGCATCAAGGGACATCG+AGG + chr5_3:24565620-24565639 None:intergenic 45.0%
TACGCATCAAAGGACATCGA+GGG + chr5_3:24566060-24566079 None:intergenic 45.0%
TTACGCATCAAAGGACATCG+AGG + chr5_3:24566061-24566080 None:intergenic 45.0%
TGACTCTTGTCGCGAAAATG+AGG - chr5_3:24566452-24566471 Msa0806280:intron 45.0%
ATGACCCTTGACGCGAAAAT+TGG - chr5_3:24566777-24566796 Msa0806280:intron 45.0%
CGCATCATGTTTCGCATCAA+GGG + chr5_3:24565551-24565570 None:intergenic 45.0%
TCGCATCATGTTTCGCATCA+AGG + chr5_3:24565552-24565571 None:intergenic 45.0%
TTTGCATCAAGGGACATCGA+GGG + chr5_3:24565619-24565638 None:intergenic 45.0%
! TTTTGCATCAAGGGACATCG+AGG + chr5_3:24565620-24565639 None:intergenic 45.0%
TTTGCATCAAGGGACATCGA+GGG + chr5_3:24565619-24565638 None:intergenic 45.0%
! TTTTGCATCAAGGGACATCG+AGG + chr5_3:24565620-24565639 None:intergenic 45.0%
TACGCATCAAAGGACATCGA+GGG + chr5_3:24566060-24566079 None:intergenic 45.0%
TTACGCATCAAAGGACATCG+AGG + chr5_3:24566061-24566080 None:intergenic 45.0%
ATGACCCTTGACGCGAAAAT+TGG - chr5_3:24566777-24566796 Msa0806280:intron 45.0%
!! TTAATATAAATTTGATAAAT+AGG - chr5_3:24566639-24566658 Msa0806280:intron 5.0%
!! TTAATATAAATTTGATAAAT+AGG - chr5_3:24566639-24566658 Msa0806280:intron 5.0%
!!! GGGGAAGATGGGTTTTGGTT+TGG + chr5_3:24557478-24557497 None:intergenic 50.0%
TGAAGCGAGCGAAGAAACTG+GGG + chr5_3:24557590-24557609 None:intergenic 50.0%
GATGAAGCGAGCGAAGAAAC+TGG + chr5_3:24557592-24557611 None:intergenic 50.0%
! AGGAGTGGTGGTGATAGTCA+TGG + chr5_3:24557626-24557645 None:intergenic 50.0%
GATTACCTCTAACGGAGGAG+TGG + chr5_3:24557641-24557660 None:intergenic 50.0%
GAAGGTCCTCAACCTATGGA+AGG - chr5_3:24557925-24557944 Msa0806280:intron 50.0%
CACAAGTACAGTGGATGCTG+TGG - chr5_3:24558427-24558446 Msa0806280:intron 50.0%
GCAGTTGAAGATCCGCCAAT+TGG - chr5_3:24558449-24558468 Msa0806280:intron 50.0%
CGCCAATTGGGAGATTCACA+TGG - chr5_3:24558462-24558481 Msa0806280:intron 50.0%
GCGGATACTGATCTTTCCGA+AGG - chr5_3:24558668-24558687 Msa0806280:intron 50.0%
GATGCAGGTTCGATGCCTTA+TGG - chr5_3:24558732-24558751 Msa0806280:intron 50.0%
CAGGTTCGATGCCTTATGGT+TGG - chr5_3:24558736-24558755 Msa0806280:intron 50.0%
GCAATAGGGTCTTGGCAGTT+TGG - chr5_3:24558976-24558995 Msa0806280:intron 50.0%
! AATAGTGTTGGGCGCAAGGA+GGG + chr5_3:24560110-24560129 None:intergenic 50.0%
TCCTTGCGCCCAACACTATT+GGG - chr5_3:24560110-24560129 Msa0806280:intron 50.0%
GCACCAAGCCCAATAGTGTT+GGG + chr5_3:24560121-24560140 None:intergenic 50.0%
GCGTGTGTATAATTGGTCGG+TGG - chr5_3:24560139-24560158 Msa0806280:intron 50.0%
TTGTTAATAGCGGCCGCTAC+CGG - chr5_3:24560206-24560225 Msa0806280:intron 50.0%
GTTGGAGAAAGCGAGTGAAG+CGG - chr5_3:24560287-24560306 Msa0806280:intron 50.0%
TGGCCAAAATCGGGTCTAAG+CGG - chr5_3:24560331-24560350 Msa0806280:intron 50.0%
AAGCGTATACTCCGATCCAG+CGG + chr5_3:24560407-24560426 None:intergenic 50.0%
GTTTGGATGGAAGGTCTTGG+AGG - chr5_3:24560744-24560763 Msa0806280:intron 50.0%
TTGGATGGAAGGTCTTGGAG+GGG - chr5_3:24560746-24560765 Msa0806280:intron 50.0%
!! GAGGAGAATTTTGGAGGGGA+GGG + chr5_3:24560948-24560967 None:intergenic 50.0%
AGAGAGAGAGAAAGGGGAGA+AGG + chr5_3:24561441-24561460 None:intergenic 50.0%
TCCGGCAAGAGAGAGAGAAA+GGG + chr5_3:24561448-24561467 None:intergenic 50.0%
TTCCGGCAAGAGAGAGAGAA+AGG + chr5_3:24561449-24561468 None:intergenic 50.0%
!!! GACACCAAACGGCCGTTTTT+TGG + chr5_3:24561487-24561506 None:intergenic 50.0%
GGATCCAAAGCAGGTCAAAG+CGG + chr5_3:24561568-24561587 None:intergenic 50.0%
AGTTGCGCGTTTGTGGAATG+CGG + chr5_3:24561622-24561641 None:intergenic 50.0%
CATTCCACAAACGCGCAACT+CGG - chr5_3:24561622-24561641 Msa0806280:intron 50.0%
GGTTATTCCATGGTCATGCC+CGG - chr5_3:24561735-24561754 Msa0806280:intron 50.0%
GTTATTCCATGGTCATGCCC+GGG - chr5_3:24561736-24561755 Msa0806280:intron 50.0%
TTATCACAGCCTTGAGGGCA+AGG - chr5_3:24561864-24561883 Msa0806280:three_prime_UTR 50.0%
TCCTATCCAGCCCACTTGTT+GGG + chr5_3:24561938-24561957 None:intergenic 50.0%
TTCCTATCCAGCCCACTTGT+TGG + chr5_3:24561939-24561958 None:intergenic 50.0%
!! CAAGTGGGCTGGATAGGAAA+TGG - chr5_3:24561940-24561959 Msa0806280:three_prime_UTR 50.0%
CGGATCCTCCTGTAACAAAC+TGG + chr5_3:24561985-24562004 None:intergenic 50.0%
AATGCGCGTGAGAGTGATTG+GGG - chr5_3:24562617-24562636 Msa0806280:CDS 50.0%
TGCGCGAGACACTATGGTAA+AGG - chr5_3:24563795-24563814 Msa0806280:five_prime_UTR 50.0%
CATGATATCGGAAGCTGCAG+TGG - chr5_3:24564412-24564431 Msa0806280:intron 50.0%
GGAGATTGATGCTCTTGCAG+AGG - chr5_3:24564433-24564452 Msa0806280:intron 50.0%
TTTCGCATCAAGGGACATCG+AGG + chr5_3:24566528-24566547 None:intergenic 50.0%
!! TTTGCATCAAGGGGCATCGA+AGG + chr5_3:24567725-24567744 None:intergenic 50.0%
TTTCGCATCAAGGGACATCG+AGG + chr5_3:24566528-24566547 None:intergenic 50.0%
TACCTCTAACGGAGGAGTGG+TGG + chr5_3:24557638-24557657 None:intergenic 55.0%
! CAATAGTGTTGGGCGCAAGG+AGG + chr5_3:24560111-24560130 None:intergenic 55.0%
CTCCTTGCGCCCAACACTAT+TGG - chr5_3:24560109-24560128 Msa0806280:intron 55.0%
CGCACCAAGCCCAATAGTGT+TGG + chr5_3:24560122-24560141 None:intergenic 55.0%
AAACGCGATGCAGCGCTACA+AGG - chr5_3:24560257-24560276 Msa0806280:intron 55.0%
CGAGTGAAGCGGCCGATATT+CGG - chr5_3:24560298-24560317 Msa0806280:intron 55.0%
!! AATCGTACAATCGGTGCCGC+TGG - chr5_3:24560388-24560407 Msa0806280:intron 55.0%
!! TACAATCGGTGCCGCTGGAT+CGG - chr5_3:24560393-24560412 Msa0806280:intron 55.0%
!! GGAGGAGAATTTTGGAGGGG+AGG + chr5_3:24560949-24560968 None:intergenic 55.0%
GAGAGAGAAAGGGGAGAAGG+AGG + chr5_3:24561438-24561457 None:intergenic 55.0%
CCGGCAAGAGAGAGAGAAAG+GGG + chr5_3:24561447-24561466 None:intergenic 55.0%
CCCCTTTCTCTCTCTCTTGC+CGG - chr5_3:24561444-24561463 Msa0806280:intron 55.0%
CCGGAGAAAGGGACACCAAA+CGG + chr5_3:24561498-24561517 None:intergenic 55.0%
!! CCGTTTGGTGTCCCTTTCTC+CGG - chr5_3:24561495-24561514 Msa0806280:intron 55.0%
GTTGCGCGTTTGTGGAATGC+GGG + chr5_3:24561621-24561640 None:intergenic 55.0%
AAGTAACCCGGGCATGACCA+TGG + chr5_3:24561745-24561764 None:intergenic 55.0%
CTCTTCCTCTGGTCATAGGC+TGG - chr5_3:24561784-24561803 Msa0806280:intron 55.0%
TCTGTCCAGCCTATGACCAG+AGG + chr5_3:24561792-24561811 None:intergenic 55.0%
ACAGGAGGATCCGGGCATTT+AGG - chr5_3:24561992-24562011 Msa0806280:three_prime_UTR 55.0%
CAGGAGGATCCGGGCATTTA+GGG - chr5_3:24561993-24562012 Msa0806280:three_prime_UTR 55.0%
GATCCGGGCATTTAGGGAGA+GGG - chr5_3:24561999-24562018 Msa0806280:three_prime_UTR 55.0%
ATCCGGGCATTTAGGGAGAG+GGG - chr5_3:24562000-24562019 Msa0806280:three_prime_UTR 55.0%
ATCCCCTCTCCCTAAATGCC+CGG + chr5_3:24562005-24562024 None:intergenic 55.0%
CACTGATGCATCTAGCGGTG+CGG + chr5_3:24564368-24564387 None:intergenic 55.0%
TTCGCATCAAGGGCCATCGA+GGG + chr5_3:24566203-24566222 None:intergenic 55.0%
TTTCGCATCAAGGGCCATCG+AGG + chr5_3:24566204-24566223 None:intergenic 55.0%
TTCGCATCAAGGGCCATCGA+GGG + chr5_3:24566203-24566222 None:intergenic 55.0%
TTTCGCATCAAGGGCCATCG+AGG + chr5_3:24566204-24566223 None:intergenic 55.0%
CACCACCACTCCTCCGTTAG+AGG - chr5_3:24557633-24557652 Msa0806280:three_prime_UTR 60.0%
! GCCCAATAGTGTTGGGCGCA+AGG + chr5_3:24560114-24560133 None:intergenic 60.0%
GCGCCCAACACTATTGGGCT+TGG - chr5_3:24560115-24560134 Msa0806280:intron 60.0%
GTGAAGCGGCCGATATTCGG+TGG - chr5_3:24560301-24560320 Msa0806280:intron 60.0%
CACCCCGCTCCACCGAATAT+CGG + chr5_3:24560313-24560332 None:intergenic 60.0%
TGGAGCGGGGTGGCCAAAAT+CGG - chr5_3:24560321-24560340 Msa0806280:intron 60.0%
! CGGCCGCTTAGACCCGATTT+TGG + chr5_3:24560337-24560356 None:intergenic 60.0%
! CGTAGCAGGCGCTATTTCGG+CGG + chr5_3:24560609-24560628 None:intergenic 60.0%
GCGCGTAGCAGGCGCTATTT+CGG + chr5_3:24560612-24560631 None:intergenic 60.0%
GATGGAAGGTCTTGGAGGGG+AGG - chr5_3:24560749-24560768 Msa0806280:intron 60.0%
!! CTTGGAGGGGAGGCGTCATT+AGG - chr5_3:24560759-24560778 Msa0806280:intron 60.0%
! GGTTGTTTCCGGCGAGTTGC+CGG + chr5_3:24561517-24561536 None:intergenic 60.0%
GAATAGCGGCCGCGAAATGG+TGG + chr5_3:24561599-24561618 None:intergenic 60.0%
TCCACAAACGCGCAACTCGG+TGG - chr5_3:24561625-24561644 Msa0806280:intron 60.0%
! AACTCGGTGGCGTTGTGACG+CGG - chr5_3:24561638-24561657 Msa0806280:intron 60.0%
! GTGACGCGGCTGCTCGTTTT+TGG - chr5_3:24561652-24561671 Msa0806280:intron 60.0%
!! GCCCAACAAGTGGGCTGGAT+AGG - chr5_3:24561934-24561953 Msa0806280:three_prime_UTR 60.0%
GGATCCGGGCATTTAGGGAG+AGG - chr5_3:24561998-24562017 Msa0806280:three_prime_UTR 60.0%
GGGCATTTAGGGAGAGGGGA+TGG - chr5_3:24562004-24562023 Msa0806280:three_prime_UTR 60.0%
GGGAGAGGGGATGGAGAGAA+AGG - chr5_3:24562013-24562032 Msa0806280:three_prime_UTR 60.0%
TCTAGCGGTGCGGATGCAAG+TGG + chr5_3:24564358-24564377 None:intergenic 60.0%
CGCGATGCAGCGCTACAAGG+CGG - chr5_3:24560260-24560279 Msa0806280:intron 65.0%
TGCAGCGCTACAAGGCGGAG+CGG - chr5_3:24560265-24560284 Msa0806280:intron 65.0%
! GCGGCCGATATTCGGTGGAG+CGG - chr5_3:24560306-24560325 Msa0806280:intron 65.0%
! CGGCCGATATTCGGTGGAGC+GGG - chr5_3:24560307-24560326 Msa0806280:intron 65.0%
! GGCCGATATTCGGTGGAGCG+GGG - chr5_3:24560308-24560327 Msa0806280:intron 65.0%
! CGATATTCGGTGGAGCGGGG+TGG - chr5_3:24560311-24560330 Msa0806280:intron 65.0%
GGAGCGGGGTGGCCAAAATC+GGG - chr5_3:24560322-24560341 Msa0806280:intron 65.0%
CTGAAATGCAGCACGGCGCG+TGG + chr5_3:24560634-24560653 None:intergenic 65.0%
CCGGCGAGTTGCCGGAGAAA+GGG + chr5_3:24561509-24561528 None:intergenic 65.0%
CCCTTTCTCCGGCAACTCGC+CGG - chr5_3:24561506-24561525 Msa0806280:intron 65.0%
TCCGGCGAGTTGCCGGAGAA+AGG + chr5_3:24561510-24561529 None:intergenic 65.0%
! GCGGCCGCTTTGACCTGCTT+TGG - chr5_3:24561561-24561580 Msa0806280:intron 65.0%
CGGGAATAGCGGCCGCGAAA+TGG + chr5_3:24561602-24561621 None:intergenic 65.0%
GCCACCGAGTTGCGCGTTTG+TGG + chr5_3:24561629-24561648 None:intergenic 65.0%
TTGTCAAACGCGGCCGCTCC+CGG + chr5_3:24561699-24561718 None:intergenic 65.0%
GCGGCCGCGTTTGACAACAG+AGG - chr5_3:24561702-24561721 Msa0806280:intron 65.0%
!! TGTTGGGCGTCGGCCCAAAC+TGG + chr5_3:24561922-24561941 None:intergenic 65.0%
TTGGGCCGACGCCCAACAAG+TGG - chr5_3:24561924-24561943 Msa0806280:three_prime_UTR 65.0%
TGGGCCGACGCCCAACAAGT+GGG - chr5_3:24561925-24561944 Msa0806280:three_prime_UTR 65.0%
! CCAGCCCACTTGTTGGGCGT+CGG + chr5_3:24561932-24561951 None:intergenic 65.0%
!! GCCATCTGGGAGCATCCCTC+TGG - chr5_3:24562978-24562997 Msa0806280:CDS 65.0%
GCCAGAGGGATGCTCCCAGA+TGG + chr5_3:24562982-24563001 None:intergenic 65.0%
!! GGCCGCTACCGGTGCTATCG+CGG - chr5_3:24560217-24560236 Msa0806280:intron 70.0%
!! CGCCGCGATAGCACCGGTAG+CGG + chr5_3:24560222-24560241 None:intergenic 70.0%
!! CTACCGGTGCTATCGCGGCG+CGG - chr5_3:24560222-24560241 Msa0806280:intron 70.0%
GCGCTACAAGGCGGAGCGGT+TGG - chr5_3:24560269-24560288 Msa0806280:intron 70.0%
GAGCGGGGCGGATCCAAAGC+AGG + chr5_3:24561577-24561596 None:intergenic 70.0%
! CGCGAAATGGTGGAGCGGGG+CGG + chr5_3:24561589-24561608 None:intergenic 70.0%
CGCCCCGCTCCACCATTTCG+CGG - chr5_3:24561587-24561606 Msa0806280:intron 70.0%
! GGCCGCGAAATGGTGGAGCG+GGG + chr5_3:24561592-24561611 None:intergenic 70.0%
! CGGCCGCGAAATGGTGGAGC+GGG + chr5_3:24561593-24561612 None:intergenic 70.0%
! GCGGCCGCGAAATGGTGGAG+CGG + chr5_3:24561594-24561613 None:intergenic 70.0%
CCGACGCCCAACAAGTGGGC+TGG - chr5_3:24561929-24561948 Msa0806280:three_prime_UTR 70.0%
AGGCCGCGCCGCGATAGCAC+CGG + chr5_3:24560228-24560247 None:intergenic 75.0%
! CACGGCGCGTGGCGCGTAGC+AGG + chr5_3:24560623-24560642 None:intergenic 80.0%
! GGCGCTATCGCGGCGCGGAG+CGG + chr5_3:24561678-24561697 None:intergenic 80.0%
! GCTCCGCGCCGCGATAGCGC+CGG - chr5_3:24561677-24561696 Msa0806280:intron 80.0%
! CTCCGCGCCGCGATAGCGCC+GGG - chr5_3:24561678-24561697 Msa0806280:intron 80.0%
! CTCCCGGCGCTATCGCGGCG+CGG + chr5_3:24561683-24561702 None:intergenic 80.0%
!! CGCCGCGATAGCGCCGGGAG+CGG - chr5_3:24561683-24561702 Msa0806280:intron 80.0%
! GGCCGCTCCCGGCGCTATCG+CGG + chr5_3:24561688-24561707 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 24557436 24569355 24557436 ID=Msa0806280;Name=Msa0806280
chr5_3 mRNA 24557436 24569355 24557436 ID=Msa0806280-mRNA-1;Parent=Msa0806280;Name=Msa0806280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1063|1|1|1|0.53|0.35|14|639|164
chr5_3 exon 24557436 24557698 24557436 ID=Msa0806280-mRNA-1:exon:9392;Parent=Msa0806280-mRNA-1
chr5_3 exon 24561792 24562111 24561792 ID=Msa0806280-mRNA-1:exon:9391;Parent=Msa0806280-mRNA-1
chr5_3 exon 24562337 24562447 24562337 ID=Msa0806280-mRNA-1:exon:9390;Parent=Msa0806280-mRNA-1
chr5_3 exon 24562557 24562666 24562557 ID=Msa0806280-mRNA-1:exon:9389;Parent=Msa0806280-mRNA-1
chr5_3 exon 24562975 24563073 24562975 ID=Msa0806280-mRNA-1:exon:9388;Parent=Msa0806280-mRNA-1
chr5_3 exon 24563196 24563311 24563196 ID=Msa0806280-mRNA-1:exon:9387;Parent=Msa0806280-mRNA-1
chr5_3 exon 24563399 24563507 24563399 ID=Msa0806280-mRNA-1:exon:9386;Parent=Msa0806280-mRNA-1
chr5_3 exon 24563630 24563848 24563630 ID=Msa0806280-mRNA-1:exon:9385;Parent=Msa0806280-mRNA-1
chr5_3 exon 24563926 24564191 24563926 ID=Msa0806280-mRNA-1:exon:9384;Parent=Msa0806280-mRNA-1
chr5_3 exon 24567966 24568123 24567966 ID=Msa0806280-mRNA-1:exon:9383;Parent=Msa0806280-mRNA-1
chr5_3 exon 24568236 24568380 24568236 ID=Msa0806280-mRNA-1:exon:9382;Parent=Msa0806280-mRNA-1
chr5_3 exon 24568845 24568926 24568845 ID=Msa0806280-mRNA-1:exon:9381;Parent=Msa0806280-mRNA-1
chr5_3 exon 24569137 24569274 24569137 ID=Msa0806280-mRNA-1:exon:9380;Parent=Msa0806280-mRNA-1
chr5_3 exon 24569295 24569355 24569295 ID=Msa0806280-mRNA-1:exon:9379;Parent=Msa0806280-mRNA-1
chr5_3 five_prime_UTR 24569295 24569355 24569295 ID=Msa0806280-mRNA-1:five_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 five_prime_UTR 24569137 24569274 24569137 ID=Msa0806280-mRNA-1:five_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 five_prime_UTR 24568845 24568926 24568845 ID=Msa0806280-mRNA-1:five_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 five_prime_UTR 24568236 24568380 24568236 ID=Msa0806280-mRNA-1:five_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 five_prime_UTR 24567966 24568123 24567966 ID=Msa0806280-mRNA-1:five_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 five_prime_UTR 24563926 24564191 24563926 ID=Msa0806280-mRNA-1:five_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 five_prime_UTR 24563636 24563848 24563636 ID=Msa0806280-mRNA-1:five_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 CDS 24563630 24563635 24563630 ID=Msa0806280-mRNA-1:cds;Parent=Msa0806280-mRNA-1
chr5_3 CDS 24563399 24563507 24563399 ID=Msa0806280-mRNA-1:cds;Parent=Msa0806280-mRNA-1
chr5_3 CDS 24563196 24563311 24563196 ID=Msa0806280-mRNA-1:cds;Parent=Msa0806280-mRNA-1
chr5_3 CDS 24562975 24563073 24562975 ID=Msa0806280-mRNA-1:cds;Parent=Msa0806280-mRNA-1
chr5_3 CDS 24562557 24562666 24562557 ID=Msa0806280-mRNA-1:cds;Parent=Msa0806280-mRNA-1
chr5_3 CDS 24562393 24562447 24562393 ID=Msa0806280-mRNA-1:cds;Parent=Msa0806280-mRNA-1
chr5_3 three_prime_UTR 24562337 24562392 24562337 ID=Msa0806280-mRNA-1:three_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 three_prime_UTR 24561792 24562111 24561792 ID=Msa0806280-mRNA-1:three_prime_utr;Parent=Msa0806280-mRNA-1
chr5_3 three_prime_UTR 24557436 24557698 24557436 ID=Msa0806280-mRNA-1:three_prime_utr;Parent=Msa0806280-mRNA-1
Gene Sequence

>Msa0806280

ATGAAGGGAACTGTTGTGGAAGGCACCATACAGAAGTTGTTTGAAGGCCACCATATGAACTATATTGAATGCATGAATGTGGATTATAAATCAACAAGAAAAGAATCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTACAGATGTGTATGCTTCTTTTGATAAGTATGTGGAAGTAGAACAGCTTGAGGGTGATAACAAGTATCATGCAGAGCAGTATGGTTTACAGGAAGCAAGAAAGGGTGTATTGTTCATTGATTTTCCACCTGTTCTTCAGCTTCAGTTAAAACGGTTTGAGTATGATTTTGCGCGAGACACTATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTACAATTAGATCTTGATAGGGATAATGGGAAGTATCTATCTCCTAACGCAGATAGAAGTATTCGCAACCTTTATACACTTCACAGTTGTTACAGAACCACTTGCATCCGCACCGCTAGATGCATCAGTGTCAAGTTTTGA
Protein sequence

>Msa0806280

MKGTVVEGTIQKLFEGHHMNYIECMNVDYKSTRKESFYDLQLDVKGCTDVYASFDKYVEVEQLEGDNKYHAEQYGLQEARKGVLFIDFPPVLQLQLKRFEYDFARDTMVKINDRYEFPLQLDLDRDNGKYLSPNADRSIRNLYTLHSCYRTTCIRTARCISVKF*