Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048000 | AET03809.1 | 86.957 | 46 | 6 | 0 | 74 | 119 | 323 | 368 | 1.51e-18 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048000 | G7LC59 | 86.957 | 46 | 6 | 0 | 74 | 119 | 323 | 368 | 7.20e-19 | 91.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135500 | Msa1048000 | 0.884090 | 2.581039e-71 | -8.615850e-47 |
| Msa0222760 | Msa1048000 | 0.867746 | 1.090692e-65 | -8.615850e-47 |
| Msa1048000 | Msa1068790 | 0.825380 | 4.838431e-54 | -8.615850e-47 |
| Msa0309150 | Msa1048000 | 0.934274 | 5.204824e-96 | -8.615850e-47 |
| Msa0537300 | Msa1048000 | 0.811588 | 6.496297e-51 | -8.615850e-47 |
| Msa0858800 | Msa1048000 | 0.844823 | 5.953847e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048000 | MtrunA17_Chr8g0372031 | 86.957 | 46 | 6 | 0 | 74 | 119 | 323 | 368 | 1.39e-22 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGATTATTTCTAACAATT+TGG | 0.175913 | 7_2:-9244364 | Msa1048000:three_prime_UTR |
| TCATCTATGTCAATGTCTTT+TGG | 0.217326 | 7_2:-9242256 | Msa1048000:three_prime_UTR |
| TGCTATGAATGATCATTATT+TGG | 0.244241 | 7_2:-9244124 | Msa1048000:three_prime_UTR |
| ATAGATCGACGCCGGAAAAT+TGG | 0.281594 | 7_2:+9246836 | None:intergenic |
| TTGCTGAGAGTAAACTTCTT+TGG | 0.302363 | 7_2:-9244544 | Msa1048000:CDS |
| GTTGTGGTTGTTGGTGAATC+AGG | 0.314504 | 7_2:+9244439 | None:intergenic |
| ATGATTGGAAGAAAGGAAAA+AGG | 0.318633 | 7_2:-9243012 | Msa1048000:three_prime_UTR |
| ATCAGAACTGCAATTGATAT+TGG | 0.325051 | 7_2:-9245417 | Msa1048000:CDS |
| GACATTGATTGAGATCATAT+TGG | 0.347392 | 7_2:+9242423 | None:intergenic |
| AGGTCAAGGTTCTCTGCATC+TGG | 0.349914 | 7_2:+9244508 | None:intergenic |
| TAACTATTTATTCATTCGTT+TGG | 0.352162 | 7_2:+9242329 | None:intergenic |
| ATAGACCCACCTTTGATTCC+TGG | 0.357837 | 7_2:+9245438 | None:intergenic |
| GTTCTGTTGGTTGTGGTTGT+TGG | 0.365408 | 7_2:+9244430 | None:intergenic |
| AAGTAGCAGGCCTGCACATC+TGG | 0.365591 | 7_2:-9244404 | Msa1048000:three_prime_UTR |
| GGTGAACGGCGGTGGAAAAT+TGG | 0.381098 | 7_2:+9246857 | None:intergenic |
| GTAATGCTTTCTTGTGTGTC+TGG | 0.386959 | 7_2:+9242397 | None:intergenic |
| CTCTCTGAATCGCGTCCAAC+TGG | 0.394223 | 7_2:-9246385 | Msa1048000:intron |
| AAAGCATTACATTGCAGGAT+TGG | 0.404999 | 7_2:-9242384 | Msa1048000:three_prime_UTR |
| GGTGGTGAGTTGAAGGAGGA+AGG | 0.408998 | 7_2:+9246887 | None:intergenic |
| AGAAACGCGTACAGTGGGAG+TGG | 0.410651 | 7_2:+9246912 | None:intergenic |
| ACAAGAAAGCATTACATTGC+AGG | 0.412715 | 7_2:-9242389 | Msa1048000:three_prime_UTR |
| ATGTGTTTAGGATGCAGATT+GGG | 0.422576 | 7_2:-9246418 | Msa1048000:intron |
| TTTACCTTTCATTTATGTAC+TGG | 0.422959 | 7_2:+9243992 | None:intergenic |
| TTTACCTTTCATTTATGTAC+TGG | 0.422959 | 7_2:+9244094 | None:intergenic |
| AGCAGTGACACTTGCGTGTT+TGG | 0.424113 | 7_2:-9245291 | Msa1048000:CDS |
| ATTGCTTTGTAGTATGTTCA+AGG | 0.424344 | 7_2:-9242951 | Msa1048000:three_prime_UTR |
| CGTTTCCTCTCTATTCTCTC+TGG | 0.426876 | 7_2:-9246797 | Msa1048000:five_prime_UTR |
| TTGTGCATGTTAGAGTTGTT+TGG | 0.429724 | 7_2:-9242218 | Msa1048000:three_prime_UTR |
| CACTGCAGTTGGTCGATGAT+AGG | 0.431065 | 7_2:-9243035 | Msa1048000:three_prime_UTR |
| ATTAACGAAAACTTACTCCT+TGG | 0.431112 | 7_2:-9242168 | Msa1048000:three_prime_UTR |
| TTATAATTATGTCATAGTCT+TGG | 0.441239 | 7_2:+9244297 | None:intergenic |
| ACTTTAAGTTCTGTTGGTTG+TGG | 0.451121 | 7_2:+9244423 | None:intergenic |
| GGAAAATTGGTGAACGGCGG+TGG | 0.451680 | 7_2:+9246849 | None:intergenic |
| CCTGCTACTTTAAGTTCTGT+TGG | 0.454245 | 7_2:+9244417 | None:intergenic |
| TGATAGGATGATTGGAAGAA+AGG | 0.455775 | 7_2:-9243019 | Msa1048000:three_prime_UTR |
| TGGTGAGTTGAAGGAGGAAG+GGG | 0.460435 | 7_2:+9246889 | None:intergenic |
| TTGGTCGATGATAGGATGAT+TGG | 0.463209 | 7_2:-9243027 | Msa1048000:three_prime_UTR |
| TGAAGGCGGTGGTGAGTTGA+AGG | 0.464477 | 7_2:+9246880 | None:intergenic |
| GGTGTAACATGCTGCAACTC+AGG | 0.473231 | 7_2:-9245270 | Msa1048000:intron |
| GATCAGAGATGGATCGGAGA+TGG | 0.477627 | 7_2:-9244019 | Msa1048000:three_prime_UTR |
| GAAAATGCTAATGGTGCTAA+TGG | 0.479270 | 7_2:-9245498 | Msa1048000:five_prime_UTR |
| CATGTGTTTAGGATGCAGAT+TGG | 0.480175 | 7_2:-9246419 | Msa1048000:intron |
| TAGACCCACCTTTGATTCCT+GGG | 0.486233 | 7_2:+9245439 | None:intergenic |
| TGGAAAATTGGTGAAGGCGG+TGG | 0.507133 | 7_2:+9246869 | None:intergenic |
| GGCGAGGACGGCGAGATTGA+CGG | 0.509255 | 7_2:+9246730 | None:intergenic |
| AACTCTAACATGCACAAAGA+TGG | 0.512557 | 7_2:+9242224 | None:intergenic |
| GGCGAGATTGACGGCGAGGA+CGG | 0.517260 | 7_2:+9246718 | None:intergenic |
| CGTCCGTCGCGACCCATCTC+CGG | 0.517830 | 7_2:+9244051 | None:intergenic |
| TAGTCTTGGATGATTTCAAA+AGG | 0.517943 | 7_2:+9244339 | None:intergenic |
| GTGGTGAGTTGAAGGAGGAA+GGG | 0.520390 | 7_2:+9246888 | None:intergenic |
| ATGAATGATCATTATTTGGT+CGG | 0.522563 | 7_2:-9244120 | Msa1048000:three_prime_UTR |
| GTGTTCAACGGCGAGATTGA+CGG | 0.525496 | 7_2:+9246709 | None:intergenic |
| GTGCCTAGTGTGCTTGAAGT+TGG | 0.526165 | 7_2:+9243055 | None:intergenic |
| ATCAGAGATGGATCGGAGAT+GGG | 0.543382 | 7_2:-9244018 | Msa1048000:three_prime_UTR |
| TTGCTTTGTAGTATGTTCAA+GGG | 0.543873 | 7_2:-9242950 | Msa1048000:three_prime_UTR |
| CTGCAATTGATATTGGTTGT+GGG | 0.551899 | 7_2:-9245410 | Msa1048000:CDS |
| TACAGTGGGAGTGGGAAAGA+AGG | 0.553012 | 7_2:+9246921 | None:intergenic |
| ACTCCAACTTCAAGCACACT+AGG | 0.554262 | 7_2:-9243058 | Msa1048000:three_prime_UTR |
| TTAATGCAAGATCTGATCCC+AGG | 0.555758 | 7_2:-9245456 | Msa1048000:CDS |
| ATAGCAGAGACCAGATGTGC+AGG | 0.557264 | 7_2:+9244394 | None:intergenic |
| TAATTAATTTGTAAAGAGTG+TGG | 0.558143 | 7_2:+9245322 | None:intergenic |
| ACTGCAATTGATATTGGTTG+TGG | 0.558336 | 7_2:-9245411 | Msa1048000:CDS |
| TGCGGAGATCAGAGATGGAT+CGG | 0.559175 | 7_2:-9244025 | Msa1048000:three_prime_UTR |
| CGATGTATCTGCTAGAAATG+AGG | 0.560357 | 7_2:-9242919 | Msa1048000:intron |
| GATCTGATCCCAGGAATCAA+AGG | 0.569822 | 7_2:-9245447 | Msa1048000:CDS |
| CCAACAGAACTTAAAGTAGC+AGG | 0.571176 | 7_2:-9244417 | Msa1048000:exon |
| AGGCGGTGGTGAGTTGAAGG+AGG | 0.573338 | 7_2:+9246883 | None:intergenic |
| GGGTCGCGACGGACGTGCTG+CGG | 0.574083 | 7_2:-9244043 | Msa1048000:three_prime_UTR |
| GACGGCGAGATTGACGGCGC+TGG | 0.574936 | 7_2:+9246736 | None:intergenic |
| ATAAATGAAAGGTAAAGTGA+TGG | 0.578660 | 7_2:-9244087 | Msa1048000:three_prime_UTR |
| GGTCAAGGTTCTCTGCATCT+GGG | 0.580936 | 7_2:+9244509 | None:intergenic |
| GTCTCCAGTACATAAATGAA+AGG | 0.584106 | 7_2:-9244098 | Msa1048000:three_prime_UTR |
| TGAAACATAAAGACACAGCT+AGG | 0.592036 | 7_2:+9242299 | None:intergenic |
| CGTGCTGCGGAGATCAGAGA+TGG | 0.597433 | 7_2:-9244030 | Msa1048000:three_prime_UTR |
| GTCTCCAGTACATAAATGAA+AGG | 0.600118 | 7_2:-9243996 | Msa1048000:intron |
| GCTAATGGTGCTAATGGTGT+TGG | 0.600330 | 7_2:-9245492 | Msa1048000:five_prime_UTR |
| AGGGGAGAAACGCGTACAGT+GGG | 0.601790 | 7_2:+9246907 | None:intergenic |
| CTGATCCCAGGAATCAAAGG+TGG | 0.603151 | 7_2:-9245444 | Msa1048000:CDS |
| AAAGAAGTTTACTCTCAGCA+AGG | 0.612122 | 7_2:+9244546 | None:intergenic |
| CGGTGGAAAATTGGTGAAGG+CGG | 0.617965 | 7_2:+9246866 | None:intergenic |
| AGCACACTAGGCACTGCAGT+TGG | 0.625724 | 7_2:-9243046 | Msa1048000:three_prime_UTR |
| GAAACGCGTACAGTGGGAGT+GGG | 0.625806 | 7_2:+9246913 | None:intergenic |
| TGCAATTGATATTGGTTGTG+GGG | 0.628618 | 7_2:-9245409 | Msa1048000:CDS |
| AAGGGGAGAAACGCGTACAG+TGG | 0.637071 | 7_2:+9246906 | None:intergenic |
| CGGCGGTGGAAAATTGGTGA+AGG | 0.637441 | 7_2:+9246863 | None:intergenic |
| AGACCGGAGATGGGTCGCGA+CGG | 0.641892 | 7_2:-9244054 | Msa1048000:three_prime_UTR |
| GAGAGAGAATAGATCGACGC+CGG | 0.646401 | 7_2:+9246828 | None:intergenic |
| GACGCCGGAAAATTGGTGAA+CGG | 0.648610 | 7_2:+9246843 | None:intergenic |
| TGATCCCAGGAATCAAAGGT+GGG | 0.659793 | 7_2:-9245443 | Msa1048000:CDS |
| TGTGTCCAGAGAGAATAGAG+AGG | 0.669997 | 7_2:+9246792 | None:intergenic |
| GTGGAGATTAGTGTGTTCAA+CGG | 0.674151 | 7_2:+9246697 | None:intergenic |
| CAACGGCGAGATTGACGGCG+AGG | 0.686231 | 7_2:+9246714 | None:intergenic |
| GCCGGAAAATTGGTGAACGG+CGG | 0.696737 | 7_2:+9246846 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr7_2:9245408-9245427 | Msa1048000:CDS | 0.0% |
| !!! | TTAAACATAAATATTGATTT+AGG | + | chr7_2:9245253-9245272 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAAAAATTATCCA+AGG | - | chr7_2:9246234-9246253 | Msa1048000:intron | 10.0% |
| !! | TAAATAATGAATAACTAAAT+CGG | + | chr7_2:9246524-9246543 | None:intergenic | 10.0% |
| !! | ATAAAAACAAACACAAAAAA+AGG | + | chr7_2:9242390-9242409 | None:intergenic | 15.0% |
| !! | TGAATTTGATTAAATTAAAC+AGG | - | chr7_2:9242806-9242825 | Msa1048000:intron | 15.0% |
| !! | CAAAAGAAAAAAAACATAAA+TGG | + | chr7_2:9243109-9243128 | None:intergenic | 15.0% |
| !!! | TAGCAAAATAATTTTTGAAT+AGG | - | chr7_2:9243261-9243280 | Msa1048000:intron | 15.0% |
| !!! | AAAATAATTTTTGAATAGGA+TGG | - | chr7_2:9243265-9243284 | Msa1048000:intron | 15.0% |
| !! | AATATTCAAAAGTAAAAAGA+AGG | + | chr7_2:9243640-9243659 | None:intergenic | 15.0% |
| !!! | TTTTGAATATTTAGTTTCAA+TGG | - | chr7_2:9243649-9243668 | Msa1048000:intron | 15.0% |
| !!! | TTTATTTTTAACACTTCATT+TGG | - | chr7_2:9243784-9243803 | Msa1048000:intron | 15.0% |
| !!! | TTATTTTGTAGATATTTTTC+AGG | - | chr7_2:9244007-9244026 | Msa1048000:three_prime_UTR | 15.0% |
| !!! | TTGGTAATAATTTAAGAAAA+TGG | + | chr7_2:9244178-9244197 | None:intergenic | 15.0% |
| !! | TAAACTTGAACATATAATAA+CGG | + | chr7_2:9244335-9244354 | None:intergenic | 15.0% |
| !! | TTAAAAAAATCATATAGTCT+TGG | + | chr7_2:9244691-9244710 | None:intergenic | 15.0% |
| !!! | AAGACTATATGATTTTTTTA+AGG | - | chr7_2:9244690-9244709 | Msa1048000:intron | 15.0% |
| !!! | TATAATTAGTTTATGAGATT+AGG | - | chr7_2:9245464-9245483 | Msa1048000:exon | 15.0% |
| !! | TAGGAATTAACATAATATTT+AGG | - | chr7_2:9245483-9245502 | Msa1048000:five_prime_UTR | 15.0% |
| !! | TATCCAAAATTATAAAAAAG+AGG | - | chr7_2:9245551-9245570 | Msa1048000:intron | 15.0% |
| !!! | TAACCTCTTTTTTATAATTT+TGG | + | chr7_2:9245557-9245576 | None:intergenic | 15.0% |
| !! | TTTATATGTTATGAAGTAAA+TGG | + | chr7_2:9245707-9245726 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTACAAAGAAATG+TGG | - | chr7_2:9245837-9245856 | Msa1048000:intron | 15.0% |
| !! | TTAGTTATTCATTATTTAGT+TGG | - | chr7_2:9246526-9246545 | Msa1048000:intron | 15.0% |
| !!! | TTTTCTCTACTTTTTTGATT+TGG | - | chr7_2:9242415-9242434 | Msa1048000:three_prime_UTR | 20.0% |
| !! | TCAATACACAAAAAAAATTC+TGG | + | chr7_2:9242559-9242578 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTGTATTGATGT+TGG | - | chr7_2:9242562-9242581 | Msa1048000:intron | 20.0% |
| !!! | ACTTTTTCCTGAAATAATAA+GGG | + | chr7_2:9243242-9243261 | None:intergenic | 20.0% |
| !!! | TACTTTTTCCTGAAATAATA+AGG | + | chr7_2:9243243-9243262 | None:intergenic | 20.0% |
| !! | TTCTAAACTCTATAAAGTAA+AGG | - | chr7_2:9243418-9243437 | Msa1048000:intron | 20.0% |
| !! | CATATTCAATGAAAATGTAT+TGG | - | chr7_2:9243473-9243492 | Msa1048000:intron | 20.0% |
| !!! | TAATTTTGAGAAAATGCTAA+TGG | - | chr7_2:9243506-9243525 | Msa1048000:intron | 20.0% |
| !!! | TAATTAATTTGTAAAGAGTG+TGG | + | chr7_2:9243694-9243713 | None:intergenic | 20.0% |
| !! | ATATTGTAAGAAGTCAATTA+AGG | - | chr7_2:9243882-9243901 | Msa1048000:intron | 20.0% |
| !!! | CAATTAAGGATTTTTAGAAA+AGG | - | chr7_2:9243896-9243915 | Msa1048000:intron | 20.0% |
| !!! | TATAAATAAATTTTGTCAGC+CGG | - | chr7_2:9244054-9244073 | Msa1048000:three_prime_UTR | 20.0% |
| !! | TTATAATTATGTCATAGTCT+TGG | + | chr7_2:9244719-9244738 | None:intergenic | 20.0% |
| !! | GAATTTATGTTAATTCATGT+AGG | - | chr7_2:9244780-9244799 | Msa1048000:intron | 20.0% |
| !! | ACTATAATTATGAAATGACA+AGG | + | chr7_2:9244826-9244845 | None:intergenic | 20.0% |
| !!! | AATTCAGAACTTTTATATAC+CGG | - | chr7_2:9245130-9245149 | Msa1048000:intron | 20.0% |
| !!! | AATTAGTCGATTATTGATTT+AGG | + | chr7_2:9245282-9245301 | None:intergenic | 20.0% |
| !!! | ATATTTAGGATGAAAACAAT+TGG | - | chr7_2:9245497-9245516 | Msa1048000:five_prime_UTR | 20.0% |
| !! | TAGAATGATAAATTAGTAAG+AGG | + | chr7_2:9246127-9246146 | None:intergenic | 20.0% |
| !!! | TATGATAATTTGAAACCTTT+AGG | + | chr7_2:9246496-9246515 | None:intergenic | 20.0% |
| !! | TAACTATTTATTCATTCGTT+TGG | + | chr7_2:9246687-9246706 | None:intergenic | 20.0% |
| !!! | AGTAAGTTTTCGTTAATTAA+TGG | + | chr7_2:9246842-9246861 | None:intergenic | 20.0% |
| !! | TTTTTGTTGATCTCATTTGA+TGG | - | chr7_2:9242480-9242499 | Msa1048000:intron | 25.0% |
| ! | ATATGCATTCAAACATGATT+TGG | + | chr7_2:9242509-9242528 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACCATACCAGT+TGG | + | chr7_2:9242646-9242665 | None:intergenic | 25.0% |
| !!! | TTTTTGCTGTTGTAAATATG+AGG | - | chr7_2:9242674-9242693 | Msa1048000:intron | 25.0% |
| !!! | TATTGTGTTTTTGTTACAGA+GGG | - | chr7_2:9242733-9242752 | Msa1048000:intron | 25.0% |
| !! | CAGGTATGAAATTATAGTTT+TGG | - | chr7_2:9242825-9242844 | Msa1048000:intron | 25.0% |
| ! | ATGTATGATATGATAGAAAC+AGG | + | chr7_2:9242928-9242947 | None:intergenic | 25.0% |
| !!! | GAATTGGGTTTTTTTAGTAA+TGG | - | chr7_2:9242957-9242976 | Msa1048000:three_prime_UTR | 25.0% |
| ! | ATGGTATCTGATGTATATTT+AGG | - | chr7_2:9242976-9242995 | Msa1048000:three_prime_UTR | 25.0% |
| ! | ATTTAGGAGGAAATTAATGT+TGG | - | chr7_2:9242992-9243011 | Msa1048000:three_prime_UTR | 25.0% |
| ! | TTTAGGAGGAAATTAATGTT+GGG | - | chr7_2:9242993-9243012 | Msa1048000:three_prime_UTR | 25.0% |
| !!! | TTTCATGTAGATATTGACTT+AGG | - | chr7_2:9243072-9243091 | Msa1048000:intron | 25.0% |
| !! | TTTTCTTTTGTCTGCATATA+TGG | - | chr7_2:9243119-9243138 | Msa1048000:intron | 25.0% |
| !! | TTTCTTTTGTCTGCATATAT+GGG | - | chr7_2:9243120-9243139 | Msa1048000:intron | 25.0% |
| !!! | AGGTTATTAGTTTTCAAAGA+TGG | + | chr7_2:9243213-9243232 | None:intergenic | 25.0% |
| !!! | TGAAATAATAAGGGTATCTT+AGG | + | chr7_2:9243233-9243252 | None:intergenic | 25.0% |
| ! | TAAGATACCCTTATTATTTC+AGG | - | chr7_2:9243232-9243251 | Msa1048000:intron | 25.0% |
| ! | AAACTCTATAAAGTAAAGGA+CGG | - | chr7_2:9243422-9243441 | Msa1048000:intron | 25.0% |
| !!! | TTTTCAGGAAAATCAAGTAT+TGG | - | chr7_2:9244022-9244041 | Msa1048000:three_prime_UTR | 25.0% |
| !! | ATAAATAAATTTTGTCAGCC+GGG | - | chr7_2:9244055-9244074 | Msa1048000:three_prime_UTR | 25.0% |
| !!! | GCACTTTTAATTTTTAGTGT+CGG | + | chr7_2:9244112-9244131 | None:intergenic | 25.0% |
| !! | CTAAAAATTAAAAGTGCATC+TGG | - | chr7_2:9244115-9244134 | Msa1048000:three_prime_UTR | 25.0% |
| !!! | TGCGATTATTTCTAACAATT+TGG | - | chr7_2:9244649-9244668 | Msa1048000:intron | 25.0% |
| ! | TGCTATGAATGATCATTATT+TGG | - | chr7_2:9244889-9244908 | Msa1048000:intron | 25.0% |
| ! | ATGAATGATCATTATTTGGT+CGG | - | chr7_2:9244893-9244912 | Msa1048000:intron | 25.0% |
| ! | TTTACCTTTCATTTATGTAC+TGG | + | chr7_2:9244922-9244941 | None:intergenic | 25.0% |
| ! | ATAAATGAAAGGTAAAGTGA+TGG | - | chr7_2:9244926-9244945 | Msa1048000:intron | 25.0% |
| ! | TTTACCTTTCATTTATGTAC+TGG | + | chr7_2:9244922-9244941 | None:intergenic | 25.0% |
| ! | ATAAATGAAAGGTAAAGTGA+TGG | - | chr7_2:9244926-9244945 | Msa1048000:intron | 25.0% |
| !!! | AGTTTTGGTTTTTCCAAAAA+CGG | - | chr7_2:9245074-9245093 | Msa1048000:intron | 25.0% |
| ! | GAACTAATATTAAACTGAAC+CGG | + | chr7_2:9245152-9245171 | None:intergenic | 25.0% |
| ! | GGTTCAGTTTAATATTAGTT+CGG | - | chr7_2:9245151-9245170 | Msa1048000:intron | 25.0% |
| ! | AATTAGATGATGAATAGTAG+GGG | + | chr7_2:9245224-9245243 | None:intergenic | 25.0% |
| ! | CAATTAGATGATGAATAGTA+GGG | + | chr7_2:9245225-9245244 | None:intergenic | 25.0% |
| ! | TCAATTAGATGATGAATAGT+AGG | + | chr7_2:9245226-9245245 | None:intergenic | 25.0% |
| ! | AATCATAATTCACACATCAT+TGG | + | chr7_2:9245525-9245544 | None:intergenic | 25.0% |
| !!! | TTTTTGTCACCTTTTTAAGA+TGG | - | chr7_2:9245907-9245926 | Msa1048000:intron | 25.0% |
| !!! | TTTTGTCACCTTTTTAAGAT+GGG | - | chr7_2:9245908-9245927 | Msa1048000:intron | 25.0% |
| ! | TCTCATAATATTAAGACGTA+GGG | - | chr7_2:9246189-9246208 | Msa1048000:intron | 25.0% |
| ! | TAGCTTAATAGAGTTAGAAT+GGG | - | chr7_2:9246260-9246279 | Msa1048000:intron | 25.0% |
| ! | ATGTACAAGTAATAATCAAG+TGG | - | chr7_2:9246297-9246316 | Msa1048000:intron | 25.0% |
| !!! | GGAAATTGTCTATTGTTTTT+CGG | - | chr7_2:9246324-9246343 | Msa1048000:intron | 25.0% |
| !! | TTTTCCTGTTACCTATAAAT+GGG | + | chr7_2:9246358-9246377 | None:intergenic | 25.0% |
| ! | TGCAATTCTGATTATAGTTT+AGG | + | chr7_2:9246453-9246472 | None:intergenic | 25.0% |
| ! | TTGTGTATTGATGTTGGTTA+TGG | - | chr7_2:9242568-9242587 | Msa1048000:intron | 30.0% |
| !! | GTATTGTGTTTTTGTTACAG+AGG | - | chr7_2:9242732-9242751 | Msa1048000:intron | 30.0% |
| AACTGCACTGTCTTTATAAA+GGG | + | chr7_2:9242771-9242790 | None:intergenic | 30.0% | |
| AAACTGCACTGTCTTTATAA+AGG | + | chr7_2:9242772-9242791 | None:intergenic | 30.0% | |
| GTGCAGTTTATGTGATTATT+TGG | - | chr7_2:9242783-9242802 | Msa1048000:intron | 30.0% | |
| ! | CAAAAAAAGGTGTACATCAA+GGG | + | chr7_2:9242873-9242892 | None:intergenic | 30.0% |
| ! | ACAAAAAAAGGTGTACATCA+AGG | + | chr7_2:9242874-9242893 | None:intergenic | 30.0% |
| GCAGCAATATCTACAAAAAA+AGG | + | chr7_2:9242886-9242905 | None:intergenic | 30.0% | |
| TCATATCATACATATGACAG+TGG | - | chr7_2:9242935-9242954 | Msa1048000:three_prime_UTR | 30.0% | |
| ATACATATGACAGTGGAATT+GGG | - | chr7_2:9242942-9242961 | Msa1048000:three_prime_UTR | 30.0% | |
| GTATCTGATGTATATTTAGG+AGG | - | chr7_2:9242979-9242998 | Msa1048000:three_prime_UTR | 30.0% | |
| TTAGGAGGAAATTAATGTTG+GGG | - | chr7_2:9242994-9243013 | Msa1048000:three_prime_UTR | 30.0% | |
| ! | TTCTTTTGTCTGCATATATG+GGG | - | chr7_2:9243121-9243140 | Msa1048000:intron | 30.0% |
| ! | ACTGTTAGTAGAGATTTTGT+CGG | - | chr7_2:9243184-9243203 | Msa1048000:intron | 30.0% |
| ! | TTTTGAATAGGATGGTGAAA+TGG | - | chr7_2:9243273-9243292 | Msa1048000:intron | 30.0% |
| AACTCTATAAAGTAAAGGAC+GGG | - | chr7_2:9243423-9243442 | Msa1048000:intron | 30.0% | |
| ATCAGAACTGCAATTGATAT+TGG | - | chr7_2:9243596-9243615 | Msa1048000:intron | 30.0% | |
| ! | ACTCTACTTTGGTGATAATT+TGG | - | chr7_2:9243847-9243866 | Msa1048000:intron | 30.0% |
| ! | TAAATAAATTTTGTCAGCCG+GGG | - | chr7_2:9244056-9244075 | Msa1048000:three_prime_UTR | 30.0% |
| GTTATGACATGTATTAGTGT+CGG | + | chr7_2:9244144-9244163 | None:intergenic | 30.0% | |
| AGATTTGAGCTAAAGATAAC+TGG | - | chr7_2:9244277-9244296 | Msa1048000:intron | 30.0% | |
| GATTTGAGCTAAAGATAACT+GGG | - | chr7_2:9244278-9244297 | Msa1048000:intron | 30.0% | |
| TAGTTCTTGATTAATGAGCT+AGG | - | chr7_2:9244353-9244372 | Msa1048000:three_prime_UTR | 30.0% | |
| ! | ATTTTGTGTGACATTGAGTT+AGG | - | chr7_2:9244408-9244427 | Msa1048000:exon | 30.0% |
| ! | TAGTCTTGGATGATTTCAAA+AGG | + | chr7_2:9244677-9244696 | None:intergenic | 30.0% |
| !!! | TGTGAGTACTCTTTTAAGTT+TGG | - | chr7_2:9244850-9244869 | Msa1048000:intron | 30.0% |
| ! | GTTATTAACTGAACCGTTTT+TGG | + | chr7_2:9245090-9245109 | None:intergenic | 30.0% |
| ! | TTCAGTTTAGTTCAACAGTT+TGG | - | chr7_2:9245174-9245193 | Msa1048000:intron | 30.0% |
| AAGAAGAGATGTTAAAACGA+CGG | - | chr7_2:9245375-9245394 | Msa1048000:CDS | 30.0% | |
| TTATTCAATTAGAAAGCAGC+TGG | + | chr7_2:9245759-9245778 | None:intergenic | 30.0% | |
| AAAAAGGACCCATCTTAAAA+AGG | + | chr7_2:9245919-9245938 | None:intergenic | 30.0% | |
| ATGATTGGAAGAAAGGAAAA+AGG | - | chr7_2:9246001-9246020 | Msa1048000:intron | 30.0% | |
| ATTGCTTTGTAGTATGTTCA+AGG | - | chr7_2:9246062-9246081 | Msa1048000:intron | 30.0% | |
| TTGCTTTGTAGTATGTTCAA+GGG | - | chr7_2:9246063-9246082 | Msa1048000:intron | 30.0% | |
| CTCTCATAATATTAAGACGT+AGG | - | chr7_2:9246188-9246207 | Msa1048000:intron | 30.0% | |
| GTAGCTTAATAGAGTTAGAA+TGG | - | chr7_2:9246259-9246278 | Msa1048000:intron | 30.0% | |
| AAGTAATAATCAAGTGGAAG+TGG | - | chr7_2:9246303-9246322 | Msa1048000:intron | 30.0% | |
| ! | GTTTTCCTGTTACCTATAAA+TGG | + | chr7_2:9246359-9246378 | None:intergenic | 30.0% |
| CTATAATCAGAATTGCATCA+TGG | - | chr7_2:9246456-9246475 | Msa1048000:intron | 30.0% | |
| AGTTGGTTACTAAAGTATGT+TGG | - | chr7_2:9246543-9246562 | Msa1048000:intron | 30.0% | |
| ! | GACATTGATTGAGATCATAT+TGG | + | chr7_2:9246593-9246612 | None:intergenic | 30.0% |
| ! | TCATCTATGTCAATGTCTTT+TGG | - | chr7_2:9246757-9246776 | Msa1048000:five_prime_UTR | 30.0% |
| ATTAACGAAAACTTACTCCT+TGG | - | chr7_2:9246845-9246864 | Msa1048000:five_prime_UTR | 30.0% | |
| !!! | ACATATTTTTCAAGCATCCA+AGG | + | chr7_2:9246865-9246884 | None:intergenic | 30.0% |
| TGCTGAAAAAAGATGGAGAA+CGG | + | chr7_2:9242341-9242360 | None:intergenic | 35.0% | |
| ACATGCATGCTGAAAAAAGA+TGG | + | chr7_2:9242348-9242367 | None:intergenic | 35.0% | |
| !!! | TTTTTTCAGCATGCATGTCT+AGG | - | chr7_2:9242350-9242369 | Msa1048000:three_prime_UTR | 35.0% |
| ! | TTCCTTTTTGATCGATTGAG+AGG | - | chr7_2:9242451-9242470 | Msa1048000:intron | 35.0% |
| ATCCTCTCAATCGATCAAAA+AGG | + | chr7_2:9242456-9242475 | None:intergenic | 35.0% | |
| ! | TTTTGATCGATTGAGAGGAT+TGG | - | chr7_2:9242456-9242475 | Msa1048000:intron | 35.0% |
| TTTGATCGATTGAGAGGATT+GGG | - | chr7_2:9242457-9242476 | Msa1048000:intron | 35.0% | |
| GGTTATGGTTTCATGTGTTT+AGG | - | chr7_2:9242583-9242602 | Msa1048000:intron | 35.0% | |
| ! | ATGTGTTTAGGATGCAGATT+GGG | - | chr7_2:9242595-9242614 | Msa1048000:intron | 35.0% |
| CATACATATGACAGTGGAAT+TGG | - | chr7_2:9242941-9242960 | Msa1048000:three_prime_UTR | 35.0% | |
| AGGAAATTAATGTTGGGGTT+TGG | - | chr7_2:9242999-9243018 | Msa1048000:three_prime_UTR | 35.0% | |
| GGAAATTAATGTTGGGGTTT+GGG | - | chr7_2:9243000-9243019 | Msa1048000:three_prime_UTR | 35.0% | |
| !! | GTAGATATTGACTTAGGCAA+AGG | - | chr7_2:9243078-9243097 | Msa1048000:intron | 35.0% |
| ! | ATTTAAGATCCCTCGAAAGA+AGG | - | chr7_2:9243313-9243332 | Msa1048000:intron | 35.0% |
| ! | GAAAATGCTAATGGTGCTAA+TGG | - | chr7_2:9243515-9243534 | Msa1048000:intron | 35.0% |
| ! | ACTGCAATTGATATTGGTTG+TGG | - | chr7_2:9243602-9243621 | Msa1048000:intron | 35.0% |
| ! | CTGCAATTGATATTGGTTGT+GGG | - | chr7_2:9243603-9243622 | Msa1048000:intron | 35.0% |
| ! | TGCAATTGATATTGGTTGTG+GGG | - | chr7_2:9243604-9243623 | Msa1048000:intron | 35.0% |
| !! | GTTCCACTTTTACTCTACTT+TGG | - | chr7_2:9243836-9243855 | Msa1048000:intron | 35.0% |
| TCACCAAAGTAGAGTAAAAG+TGG | + | chr7_2:9243842-9243861 | None:intergenic | 35.0% | |
| ATAATTGTTACGATCAACCC+CGG | + | chr7_2:9244076-9244095 | None:intergenic | 35.0% | |
| AAAGAAGTTTACTCTCAGCA+AGG | + | chr7_2:9244470-9244489 | None:intergenic | 35.0% | |
| TTGCTGAGAGTAAACTTCTT+TGG | - | chr7_2:9244469-9244488 | Msa1048000:CDS | 35.0% | |
| ! | CAGTTTCACTGTACTTTTGA+AGG | + | chr7_2:9244528-9244547 | None:intergenic | 35.0% |
| ! | ACTTTAAGTTCTGTTGGTTG+TGG | + | chr7_2:9244593-9244612 | None:intergenic | 35.0% |
| GTCTCCAGTACATAAATGAA+AGG | - | chr7_2:9244915-9244934 | Msa1048000:intron | 35.0% | |
| GTCTCCAGTACATAAATGAA+AGG | - | chr7_2:9244915-9244934 | Msa1048000:intron | 35.0% | |
| !! | GTTTGGGTTAAGTTCAGTTT+TGG | - | chr7_2:9245059-9245078 | Msa1048000:intron | 35.0% |
| TGAATTGAACCATACCTAGA+GGG | + | chr7_2:9245116-9245135 | None:intergenic | 35.0% | |
| !! | CAACAGTTTGGTTCAGTTTT+TGG | - | chr7_2:9245186-9245205 | Msa1048000:intron | 35.0% |
| AAAGTGAGTAACATGTCAAC+AGG | - | chr7_2:9245576-9245595 | Msa1048000:intron | 35.0% | |
| ATAAATTGTGTCATCACCTC+TGG | - | chr7_2:9245775-9245794 | Msa1048000:intron | 35.0% | |
| !!! | GTACTGACTTTTAAGCATCA+TGG | - | chr7_2:9245797-9245816 | Msa1048000:intron | 35.0% |
| ! | TGACTTTTAAGCATCATGGT+TGG | - | chr7_2:9245801-9245820 | Msa1048000:intron | 35.0% |
| TGTAGTCCTGTGATTCAAAA+AGG | + | chr7_2:9245935-9245954 | None:intergenic | 35.0% | |
| TGATAGGATGATTGGAAGAA+AGG | - | chr7_2:9245994-9246013 | Msa1048000:intron | 35.0% | |
| ATTGGAAGAAAGGAAAAAGG+AGG | - | chr7_2:9246004-9246023 | Msa1048000:intron | 35.0% | |
| AAAGGAAAAAGGAGGCTTAT+TGG | - | chr7_2:9246012-9246031 | Msa1048000:intron | 35.0% | |
| ACTCTATTAAGCTACAACCT+TGG | + | chr7_2:9246254-9246273 | None:intergenic | 35.0% | |
| !! | TCTATTGTTTTTCGGTTAGC+AGG | - | chr7_2:9246332-9246351 | Msa1048000:intron | 35.0% |
| CTAACAAAGTGCACAATGTT+TGG | - | chr7_2:9246383-9246402 | Msa1048000:intron | 35.0% | |
| !! | ACAAGAAAGCATTACATTGC+AGG | - | chr7_2:9246624-9246643 | Msa1048000:intron | 35.0% |
| ! | AAAGCATTACATTGCAGGAT+TGG | - | chr7_2:9246629-9246648 | Msa1048000:intron | 35.0% |
| TGAAACATAAAGACACAGCT+AGG | + | chr7_2:9246717-9246736 | None:intergenic | 35.0% | |
| AACTCTAACATGCACAAAGA+TGG | + | chr7_2:9246792-9246811 | None:intergenic | 35.0% | |
| TTGTGCATGTTAGAGTTGTT+TGG | - | chr7_2:9246795-9246814 | Msa1048000:five_prime_UTR | 35.0% | |
| GTGGAGATTAGTGTGTTCAA+CGG | + | chr7_2:9242319-9242338 | None:intergenic | 40.0% | |
| TGAAAAAAGATGGAGAACGG+TGG | + | chr7_2:9242338-9242357 | None:intergenic | 40.0% | |
| ! | CATGTGTTTAGGATGCAGAT+TGG | - | chr7_2:9242594-9242613 | Msa1048000:intron | 40.0% |
| TTCACAGAAAGTCCTCAAAC+TGG | + | chr7_2:9242706-9242725 | None:intergenic | 40.0% | |
| TGTTACAGAGGGATTTCTGA+TGG | - | chr7_2:9242744-9242763 | Msa1048000:intron | 40.0% | |
| TGTACATCAAGGGCAACAAA+AGG | + | chr7_2:9242863-9242882 | None:intergenic | 40.0% | |
| ! | TGCTGCTTGCTTGAATTGTT+TGG | - | chr7_2:9242900-9242919 | Msa1048000:intron | 40.0% |
| !! | GATATTGACTTAGGCAAAGG+AGG | - | chr7_2:9243081-9243100 | Msa1048000:intron | 40.0% |
| ACATGTCCTTCACTAACAAC+AGG | + | chr7_2:9243352-9243371 | None:intergenic | 40.0% | |
| TTAATGCAAGATCTGATCCC+AGG | - | chr7_2:9243557-9243576 | Msa1048000:intron | 40.0% | |
| TGACTCAAACACGTTGACAT+TGG | + | chr7_2:9244197-9244216 | None:intergenic | 40.0% | |
| !! | CACTGTACTTTTGAAGGTCA+AGG | + | chr7_2:9244522-9244541 | None:intergenic | 40.0% |
| !! | CCTGCTACTTTAAGTTCTGT+TGG | + | chr7_2:9244599-9244618 | None:intergenic | 40.0% |
| CCAACAGAACTTAAAGTAGC+AGG | - | chr7_2:9244596-9244615 | Msa1048000:intron | 40.0% | |
| !! | AGGTAAAGTGATGGAGCTTT+TGG | - | chr7_2:9244935-9244954 | Msa1048000:intron | 40.0% |
| !! | AAGTGATGGAGCTTTTGGTT+TGG | - | chr7_2:9245042-9245061 | Msa1048000:intron | 40.0% |
| !!! | AGTGATGGAGCTTTTGGTTT+GGG | - | chr7_2:9245043-9245062 | Msa1048000:intron | 40.0% |
| GAATTGAACCATACCTAGAG+GGG | + | chr7_2:9245115-9245134 | None:intergenic | 40.0% | |
| CTGAATTGAACCATACCTAG+AGG | + | chr7_2:9245117-9245136 | None:intergenic | 40.0% | |
| AGATGATGAATAGTAGGGGT+GGG | + | chr7_2:9245220-9245239 | None:intergenic | 40.0% | |
| TAGATGATGAATAGTAGGGG+TGG | + | chr7_2:9245221-9245240 | None:intergenic | 40.0% | |
| TGCTTAAAAGTCAGTACCAG+AGG | + | chr7_2:9245794-9245813 | None:intergenic | 40.0% | |
| ! | ATGGGTCCTTTTTGAATCAC+AGG | - | chr7_2:9245926-9245945 | Msa1048000:intron | 40.0% |
| TTGGTCGATGATAGGATGAT+TGG | - | chr7_2:9245986-9246005 | Msa1048000:intron | 40.0% | |
| CGATGTATCTGCTAGAAATG+AGG | - | chr7_2:9246094-9246113 | Msa1048000:intron | 40.0% | |
| AGTTAGAATGGGATAGACAC+AGG | - | chr7_2:9246271-9246290 | Msa1048000:intron | 40.0% | |
| GTCATTTAGCACACTCCTAA+AGG | - | chr7_2:9246478-9246497 | Msa1048000:intron | 40.0% | |
| GTAATGCTTTCTTGTGTGTC+TGG | + | chr7_2:9246619-9246638 | None:intergenic | 40.0% | |
| ATAGATCGACGCCGGAAAAT+TGG | + | chr7_2:9242180-9242199 | None:intergenic | 45.0% | |
| CGTTTCCTCTCTATTCTCTC+TGG | - | chr7_2:9242216-9242235 | Msa1048000:three_prime_UTR | 45.0% | |
| TGTGTCCAGAGAGAATAGAG+AGG | + | chr7_2:9242224-9242243 | None:intergenic | 45.0% | |
| !! | ATGAGGTGTTGTCCAGTTTG+AGG | - | chr7_2:9242691-9242710 | Msa1048000:intron | 45.0% |
| CTAGGACCTGTTGTTAGTGA+AGG | - | chr7_2:9243343-9243362 | Msa1048000:intron | 45.0% | |
| AAAGTAAAGGACGGGTGCTT+TGG | - | chr7_2:9243431-9243450 | Msa1048000:intron | 45.0% | |
| ! | GCTAATGGTGCTAATGGTGT+TGG | - | chr7_2:9243521-9243540 | Msa1048000:intron | 45.0% |
| GATCTGATCCCAGGAATCAA+AGG | - | chr7_2:9243566-9243585 | Msa1048000:intron | 45.0% | |
| TGATCCCAGGAATCAAAGGT+GGG | - | chr7_2:9243570-9243589 | Msa1048000:intron | 45.0% | |
| TAGACCCACCTTTGATTCCT+GGG | + | chr7_2:9243577-9243596 | None:intergenic | 45.0% | |
| ATAGACCCACCTTTGATTCC+TGG | + | chr7_2:9243578-9243597 | None:intergenic | 45.0% | |
| ! | GTTGTGGTTGTTGGTGAATC+AGG | + | chr7_2:9244577-9244596 | None:intergenic | 45.0% |
| ! | GTTCTGTTGGTTGTGGTTGT+TGG | + | chr7_2:9244586-9244605 | None:intergenic | 45.0% |
| ATCAGAGATGGATCGGAGAT+GGG | - | chr7_2:9244995-9245014 | Msa1048000:intron | 45.0% | |
| CAGTTAATAACTGCCCCTCT+AGG | - | chr7_2:9245099-9245118 | Msa1048000:intron | 45.0% | |
| AATAACTGCCCCTCTAGGTA+TGG | - | chr7_2:9245104-9245123 | Msa1048000:intron | 45.0% | |
| GTAACATGTCAACAGGCAAG+TGG | - | chr7_2:9245583-9245602 | Msa1048000:intron | 45.0% | |
| AGGCAAGTGGCACATATCTT+TGG | - | chr7_2:9245596-9245615 | Msa1048000:intron | 45.0% | |
| GTGGCACATATCTTTGGACA+TGG | - | chr7_2:9245602-9245621 | Msa1048000:intron | 45.0% | |
| ACTCCAACTTCAAGCACACT+AGG | - | chr7_2:9245955-9245974 | Msa1048000:intron | 45.0% | |
| CAGGCCCATTTATAGGTAAC+AGG | - | chr7_2:9246351-9246370 | Msa1048000:intron | 45.0% | |
| TACAGTGGGAGTGGGAAAGA+AGG | + | chr7_2:9242095-9242114 | None:intergenic | 50.0% | |
| ! | TGGTGAGTTGAAGGAGGAAG+GGG | + | chr7_2:9242127-9242146 | None:intergenic | 50.0% |
| ! | GTGGTGAGTTGAAGGAGGAA+GGG | + | chr7_2:9242128-9242147 | None:intergenic | 50.0% |
| TGGAAAATTGGTGAAGGCGG+TGG | + | chr7_2:9242147-9242166 | None:intergenic | 50.0% | |
| CGGTGGAAAATTGGTGAAGG+CGG | + | chr7_2:9242150-9242169 | None:intergenic | 50.0% | |
| ! | ACCGCCGTTCACCAATTTTC+CGG | - | chr7_2:9242166-9242185 | Msa1048000:three_prime_UTR | 50.0% |
| GACGCCGGAAAATTGGTGAA+CGG | + | chr7_2:9242173-9242192 | None:intergenic | 50.0% | |
| GAGAGAGAATAGATCGACGC+CGG | + | chr7_2:9242188-9242207 | None:intergenic | 50.0% | |
| GTGTTCAACGGCGAGATTGA+CGG | + | chr7_2:9242307-9242326 | None:intergenic | 50.0% | |
| TGAATCGCGTCCAACTGGTA+TGG | - | chr7_2:9242633-9242652 | Msa1048000:intron | 50.0% | |
| ATCCCTCGAAAGAAGGTTGC+AGG | - | chr7_2:9243320-9243339 | Msa1048000:intron | 50.0% | |
| AGCCTGCAACCTTCTTTCGA+GGG | + | chr7_2:9243325-9243344 | None:intergenic | 50.0% | |
| TAGCCTGCAACCTTCTTTCG+AGG | + | chr7_2:9243326-9243345 | None:intergenic | 50.0% | |
| TCGAAAGAAGGTTGCAGGCT+AGG | - | chr7_2:9243325-9243344 | Msa1048000:intron | 50.0% | |
| CTGATCCCAGGAATCAAAGG+TGG | - | chr7_2:9243569-9243588 | Msa1048000:intron | 50.0% | |
| AGCAGTGACACTTGCGTGTT+TGG | - | chr7_2:9243722-9243741 | Msa1048000:intron | 50.0% | |
| GGTGTAACATGCTGCAACTC+AGG | - | chr7_2:9243743-9243762 | Msa1048000:intron | 50.0% | |
| GGTCAAGGTTCTCTGCATCT+GGG | + | chr7_2:9244507-9244526 | None:intergenic | 50.0% | |
| AGGTCAAGGTTCTCTGCATC+TGG | + | chr7_2:9244508-9244527 | None:intergenic | 50.0% | |
| ATAGCAGAGACCAGATGTGC+AGG | + | chr7_2:9244622-9244641 | None:intergenic | 50.0% | |
| ! | TGATGGAGCTTTTGCGAGAC+CGG | - | chr7_2:9244943-9244962 | Msa1048000:intron | 50.0% |
| TGCGGAGATCAGAGATGGAT+CGG | - | chr7_2:9244988-9245007 | Msa1048000:intron | 50.0% | |
| GATCAGAGATGGATCGGAGA+TGG | - | chr7_2:9244994-9245013 | Msa1048000:intron | 50.0% | |
| GTGCCTAGTGTGCTTGAAGT+TGG | + | chr7_2:9245961-9245980 | None:intergenic | 50.0% | |
| CACTGCAGTTGGTCGATGAT+AGG | - | chr7_2:9245978-9245997 | Msa1048000:intron | 50.0% | |
| CGGTTAGCAGGCCCATTTAT+AGG | - | chr7_2:9246344-9246363 | Msa1048000:intron | 50.0% | |
| GAAACGCGTACAGTGGGAGT+GGG | + | chr7_2:9242103-9242122 | None:intergenic | 55.0% | |
| AGAAACGCGTACAGTGGGAG+TGG | + | chr7_2:9242104-9242123 | None:intergenic | 55.0% | |
| AGGGGAGAAACGCGTACAGT+GGG | + | chr7_2:9242109-9242128 | None:intergenic | 55.0% | |
| AAGGGGAGAAACGCGTACAG+TGG | + | chr7_2:9242110-9242129 | None:intergenic | 55.0% | |
| ! | GGTGGTGAGTTGAAGGAGGA+AGG | + | chr7_2:9242129-9242148 | None:intergenic | 55.0% |
| ! | TGAAGGCGGTGGTGAGTTGA+AGG | + | chr7_2:9242136-9242155 | None:intergenic | 55.0% |
| CGGCGGTGGAAAATTGGTGA+AGG | + | chr7_2:9242153-9242172 | None:intergenic | 55.0% | |
| GGTGAACGGCGGTGGAAAAT+TGG | + | chr7_2:9242159-9242178 | None:intergenic | 55.0% | |
| GGAAAATTGGTGAACGGCGG+TGG | + | chr7_2:9242167-9242186 | None:intergenic | 55.0% | |
| GCCGGAAAATTGGTGAACGG+CGG | + | chr7_2:9242170-9242189 | None:intergenic | 55.0% | |
| CTCTCTGAATCGCGTCCAAC+TGG | - | chr7_2:9242628-9242647 | Msa1048000:intron | 55.0% | |
| AAGTAGCAGGCCTGCACATC+TGG | - | chr7_2:9244609-9244628 | Msa1048000:intron | 55.0% | |
| ! | AGCTTTTGCGAGACCGGAGA+TGG | - | chr7_2:9244949-9244968 | Msa1048000:intron | 55.0% |
| ! | GCTTTTGCGAGACCGGAGAT+GGG | - | chr7_2:9244950-9244969 | Msa1048000:intron | 55.0% |
| ! | AGCACACTAGGCACTGCAGT+TGG | - | chr7_2:9245967-9245986 | Msa1048000:intron | 55.0% |
| ! | AGGCGGTGGTGAGTTGAAGG+AGG | + | chr7_2:9242133-9242152 | None:intergenic | 60.0% |
| CGTGCTGCGGAGATCAGAGA+TGG | - | chr7_2:9244983-9245002 | Msa1048000:intron | 60.0% | |
| GGCGAGGACGGCGAGATTGA+CGG | + | chr7_2:9242286-9242305 | None:intergenic | 65.0% | |
| GGCGAGATTGACGGCGAGGA+CGG | + | chr7_2:9242298-9242317 | None:intergenic | 65.0% | |
| CAACGGCGAGATTGACGGCG+AGG | + | chr7_2:9242302-9242321 | None:intergenic | 65.0% | |
| AGACCGGAGATGGGTCGCGA+CGG | - | chr7_2:9244959-9244978 | Msa1048000:intron | 65.0% | |
| GACGGCGAGATTGACGGCGC+TGG | + | chr7_2:9242280-9242299 | None:intergenic | 70.0% | |
| CGTCCGTCGCGACCCATCTC+CGG | + | chr7_2:9244965-9244984 | None:intergenic | 70.0% | |
| GGGTCGCGACGGACGTGCTG+CGG | - | chr7_2:9244970-9244989 | Msa1048000:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 9242088 | 9246947 | 9242088 | ID=Msa1048000;Name=Msa1048000 |
| chr7_2 | mRNA | 9242088 | 9246947 | 9242088 | ID=Msa1048000-mRNA-1;Parent=Msa1048000;Name=Msa1048000-mRNA-1;_AED=0.29;_eAED=0.29;_QI=373|0.83|0.85|1|0.16|0|7|823|119 |
| chr7_2 | exon | 9242088 | 9242452 | 9242088 | ID=Msa1048000-mRNA-1:exon:2446;Parent=Msa1048000-mRNA-1 |
| chr7_2 | exon | 9242920 | 9243087 | 9242920 | ID=Msa1048000-mRNA-1:exon:2445;Parent=Msa1048000-mRNA-1 |
| chr7_2 | exon | 9243997 | 9244146 | 9243997 | ID=Msa1048000-mRNA-1:exon:2444;Parent=Msa1048000-mRNA-1 |
| chr7_2 | exon | 9244286 | 9244580 | 9244286 | ID=Msa1048000-mRNA-1:exon:2443;Parent=Msa1048000-mRNA-1 |
| chr7_2 | exon | 9245271 | 9245519 | 9245271 | ID=Msa1048000-mRNA-1:exon:2442;Parent=Msa1048000-mRNA-1 |
| chr7_2 | exon | 9246386 | 9246430 | 9246386 | ID=Msa1048000-mRNA-1:exon:2441;Parent=Msa1048000-mRNA-1 |
| chr7_2 | exon | 9246664 | 9246947 | 9246664 | ID=Msa1048000-mRNA-1:exon:2440;Parent=Msa1048000-mRNA-1 |
| chr7_2 | five_prime_UTR | 9246664 | 9246947 | 9246664 | ID=Msa1048000-mRNA-1:five_prime_utr;Parent=Msa1048000-mRNA-1 |
| chr7_2 | five_prime_UTR | 9246386 | 9246430 | 9246386 | ID=Msa1048000-mRNA-1:five_prime_utr;Parent=Msa1048000-mRNA-1 |
| chr7_2 | five_prime_UTR | 9245476 | 9245519 | 9245476 | ID=Msa1048000-mRNA-1:five_prime_utr;Parent=Msa1048000-mRNA-1 |
| chr7_2 | CDS | 9245271 | 9245475 | 9245271 | ID=Msa1048000-mRNA-1:cds;Parent=Msa1048000-mRNA-1 |
| chr7_2 | CDS | 9244426 | 9244580 | 9244426 | ID=Msa1048000-mRNA-1:cds;Parent=Msa1048000-mRNA-1 |
| chr7_2 | three_prime_UTR | 9244286 | 9244425 | 9244286 | ID=Msa1048000-mRNA-1:three_prime_utr;Parent=Msa1048000-mRNA-1 |
| chr7_2 | three_prime_UTR | 9243997 | 9244146 | 9243997 | ID=Msa1048000-mRNA-1:three_prime_utr;Parent=Msa1048000-mRNA-1 |
| chr7_2 | three_prime_UTR | 9242920 | 9243087 | 9242920 | ID=Msa1048000-mRNA-1:three_prime_utr;Parent=Msa1048000-mRNA-1 |
| chr7_2 | three_prime_UTR | 9242088 | 9242452 | 9242088 | ID=Msa1048000-mRNA-1:three_prime_utr;Parent=Msa1048000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
