Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355170 | XP_013468026.1 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355170 | A0A072VKV4 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0355170 | 0.848439 | 6.123370e-60 | -8.615850e-47 |
| Msa0204770 | Msa0355170 | 0.817705 | 2.870960e-52 | -8.615850e-47 |
| Msa0355170 | Msa0355180 | 0.977554 | 5.166886e-144 | -8.615850e-47 |
| Msa0355170 | Msa0355190 | 0.964302 | 3.719469e-123 | -8.615850e-47 |
| Msa0355170 | Msa0402240 | 0.959206 | 3.459693e-117 | -8.615850e-47 |
| Msa0355170 | Msa0402250 | 0.957650 | 1.626434e-115 | -8.615850e-47 |
| Msa0355170 | Msa0708900 | 0.917945 | 2.857763e-86 | -8.615850e-47 |
| Msa0355170 | Msa0708910 | 0.914647 | 1.498636e-84 | -8.615850e-47 |
| Msa0355170 | Msa0717890 | 0.808768 | 2.633349e-50 | -8.615850e-47 |
| Msa0355170 | Msa0806260 | 0.826602 | 2.479559e-54 | -8.615850e-47 |
| Msa0355170 | Msa0806270 | 0.822456 | 2.346586e-53 | -8.615850e-47 |
| Msa0355170 | Msa0806280 | 0.820670 | 6.068268e-53 | -8.615850e-47 |
| Msa0355170 | Msa0858800 | 0.803454 | 3.459566e-49 | -8.615850e-47 |
| Msa0355170 | Msa0880950 | 0.800895 | 1.162826e-48 | -8.615850e-47 |
| Msa0355170 | Msa0927290 | 0.805301 | 1.425927e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355170 | MtrunA17_Chr1g0178981 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355170 | AT1G19485.1 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
| Msa0355170 | AT1G19485.2 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
Find 131 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 3_1:-28999775 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 3_1:+28999333 | Msa0355170:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 3_1:+28999389 | Msa0355170:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 3_1:-29000069 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 3_1:-28999911 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 3_1:+28996333 | Msa0355170:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 3_1:-28999983 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.291928 | 3_1:-28996430 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 3_1:-28999961 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 3_1:+28997351 | Msa0355170:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 3_1:+29000287 | Msa0355170:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 3_1:+29000288 | Msa0355170:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 3_1:+28997334 | Msa0355170:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 3_1:+28996391 | Msa0355170:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 3_1:+28999349 | Msa0355170:CDS |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 3_1:+28999835 | Msa0355170:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 3_1:-28999789 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 3_1:-28999817 | None:intergenic |
| TAAATAGTGTGGCAAAAGTT+AGG | 0.358408 | 3_1:-28996474 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 3_1:+29000302 | Msa0355170:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 3_1:-29000084 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 3_1:-28997637 | None:intergenic |
| GCAGAGGTGCCGTGCAAATA+TGG | 0.381854 | 3_1:+28999371 | Msa0355170:CDS |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 3_1:+29000031 | Msa0355170:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 3_1:+28996325 | Msa0355170:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 3_1:+28996355 | Msa0355170:five_prime_UTR |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 3_1:+28996326 | Msa0355170:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 3_1:+28997352 | Msa0355170:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 3_1:-28996631 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 3_1:-29000135 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 3_1:+28996392 | Msa0355170:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 3_1:+28999313 | Msa0355170:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 3_1:+29000294 | Msa0355170:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 3_1:-28999841 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 3_1:+28997852 | Msa0355170:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 3_1:+29000122 | Msa0355170:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 3_1:+28999649 | Msa0355170:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 3_1:+29000223 | Msa0355170:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 3_1:-28997896 | None:intergenic |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 3_1:+28997610 | Msa0355170:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 3_1:-28997878 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 3_1:+28997431 | Msa0355170:CDS |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 3_1:+28996660 | Msa0355170:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 3_1:+28997345 | Msa0355170:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 3_1:-29000206 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 3_1:+28997609 | Msa0355170:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 3_1:+29000267 | Msa0355170:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 3_1:+29000198 | Msa0355170:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 3_1:+28999429 | Msa0355170:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 3_1:+28996305 | Msa0355170:five_prime_UTR |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 3_1:+28999334 | Msa0355170:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 3_1:+28997861 | Msa0355170:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 3_1:-28999799 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 3_1:-28996485 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 3_1:-28999601 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 3_1:+29000017 | Msa0355170:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 3_1:+29000089 | Msa0355170:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 3_1:+28997840 | Msa0355170:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 3_1:+28999485 | Msa0355170:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 3_1:+28996304 | Msa0355170:five_prime_UTR |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 3_1:+29000211 | Msa0355170:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 3_1:-28996630 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 3_1:+29000032 | Msa0355170:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 3_1:+29000013 | Msa0355170:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 3_1:-28996614 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 3_1:+28997870 | Msa0355170:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 3_1:-28999508 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 3_1:+29000266 | Msa0355170:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 3_1:+28999634 | Msa0355170:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 3_1:-28999638 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 3_1:+28997869 | Msa0355170:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 3_1:+28996615 | Msa0355170:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 3_1:-28997642 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 3_1:+28997827 | Msa0355170:intron |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 3_1:+28999916 | Msa0355170:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 3_1:+28999952 | Msa0355170:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 3_1:-29000068 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 3_1:+28999650 | Msa0355170:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 3_1:+28997305 | Msa0355170:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 3_1:+28996577 | Msa0355170:CDS |
| ACACCATTGCTAAACTCTGT+GGG | 0.562879 | 3_1:+28996683 | Msa0355170:CDS |
| TTCCCCACAGAGTTTAGCAA+TGG | 0.564444 | 3_1:-28996686 | None:intergenic |
| TAGAAGACACCATATTTGCA+CGG | 0.566075 | 3_1:-28999380 | None:intergenic |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 3_1:+29000061 | Msa0355170:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 3_1:+28996356 | Msa0355170:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 3_1:+28997830 | Msa0355170:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 3_1:+28999951 | Msa0355170:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 3_1:+28996564 | Msa0355170:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 3_1:+28999497 | Msa0355170:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 3_1:-28996307 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 3_1:-28999853 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 3_1:+28999355 | Msa0355170:CDS |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 3_1:+29000212 | Msa0355170:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 3_1:+28999422 | Msa0355170:CDS |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 3_1:+28999597 | Msa0355170:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 3_1:+28999915 | Msa0355170:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 3_1:+28999614 | Msa0355170:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 3_1:+28999390 | Msa0355170:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 3_1:-29000134 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 3_1:+28996293 | Msa0355170:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 3_1:+28996586 | Msa0355170:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 3_1:+28997599 | Msa0355170:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 3_1:+28996441 | Msa0355170:exon |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 3_1:+28999421 | Msa0355170:CDS |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 3_1:-28996310 | None:intergenic |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 3_1:-28999359 | None:intergenic |
| GACACCATTGCTAAACTCTG+TGG | 0.614594 | 3_1:+28996682 | Msa0355170:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 3_1:-29000249 | None:intergenic |
| AATTGCAAACAAGAGAGTAA+TGG | 0.617423 | 3_1:+28996435 | Msa0355170:exon |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 3_1:+29000206 | Msa0355170:CDS |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 3_1:-28996390 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 3_1:+28999613 | Msa0355170:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 3_1:+29000203 | Msa0355170:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 3_1:+28997898 | Msa0355170:CDS |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 3_1:-29000268 | None:intergenic |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 3_1:-29000189 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 3_1:+28997841 | Msa0355170:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 3_1:-29000147 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 3_1:+28997611 | Msa0355170:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 3_1:+28999493 | Msa0355170:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 3_1:+28996583 | Msa0355170:CDS |
| CACCATTGCTAAACTCTGTG+GGG | 0.668610 | 3_1:+28996684 | Msa0355170:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 3_1:+28996601 | Msa0355170:CDS |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 3_1:+29000226 | Msa0355170:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 3_1:-28997439 | None:intergenic |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 3_1:-29000123 | None:intergenic |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 3_1:+29000108 | Msa0355170:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 3_1:+28997871 | Msa0355170:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 3_1:-28999328 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 3_1:+28996580 | Msa0355170:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 3_1:-28997423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAGAGTAAAATAT+AGG | - | chr3_1:28997467-28997486 | None:intergenic | 10.0% |
| !!! | TAAGTATATATTTTGCTTTT+AGG | + | chr3_1:28997516-28997535 | Msa0355170:intron | 15.0% |
| !! | TAAAAGGATTTAGATTTAAA+TGG | + | chr3_1:28998602-28998621 | Msa0355170:intron | 15.0% |
| !! | TTTACTACATATATGAATAT+AGG | - | chr3_1:28999187-28999206 | None:intergenic | 15.0% |
| !! | TCTTCAAGTAAATATTTGAT+TGG | - | chr3_1:28997117-28997136 | None:intergenic | 20.0% |
| !! | AATCAAATATTTACTTGAAG+AGG | + | chr3_1:28997116-28997135 | Msa0355170:intron | 20.0% |
| !! | ATCAAATATTTACTTGAAGA+GGG | + | chr3_1:28997117-28997136 | Msa0355170:intron | 20.0% |
| !! | AACCAAAAAAAGAAATTAAG+GGG | - | chr3_1:28997280-28997299 | None:intergenic | 20.0% |
| !! | CAACCAAAAAAAGAAATTAA+GGG | - | chr3_1:28997281-28997300 | None:intergenic | 20.0% |
| !! | TCAACCAAAAAAAGAAATTA+AGG | - | chr3_1:28997282-28997301 | None:intergenic | 20.0% |
| !! | AAATTAGAGTAAAATATAGG+AGG | - | chr3_1:28997464-28997483 | None:intergenic | 20.0% |
| !! | TTTATTCAATGACATTTCTA+TGG | + | chr3_1:28997688-28997707 | Msa0355170:intron | 20.0% |
| !!! | ATATTGTTTTGTTACTTCTT+TGG | + | chr3_1:28997976-28997995 | Msa0355170:intron | 20.0% |
| !!! | TATTGTTTTGTTACTTCTTT+GGG | + | chr3_1:28997977-28997996 | Msa0355170:intron | 20.0% |
| !!! | AGATTTTATTTGAAGTTTGA+TGG | + | chr3_1:28998081-28998100 | Msa0355170:intron | 20.0% |
| !!! | TATTGTTCTTTTAAGAGTTA+AGG | + | chr3_1:28998140-28998159 | Msa0355170:intron | 20.0% |
| !!! | ATTGTTCTTTTAAGAGTTAA+GGG | + | chr3_1:28998141-28998160 | Msa0355170:intron | 20.0% |
| !! | TTCTTAAATTGTGTTGAATT+TGG | - | chr3_1:28998299-28998318 | None:intergenic | 20.0% |
| !!! | TCAACACAATTTAAGAATTT+TGG | + | chr3_1:28998302-28998321 | Msa0355170:intron | 20.0% |
| !!! | TTTCATTGTTATTTGTTTCA+TGG | - | chr3_1:28998330-28998349 | None:intergenic | 20.0% |
| !!! | AGCACATATTTTTGAAAAAA+TGG | + | chr3_1:28998505-28998524 | Msa0355170:intron | 20.0% |
| !!! | TTTTATTCCAAACTGTTAAA+AGG | + | chr3_1:28998586-28998605 | Msa0355170:intron | 20.0% |
| !! | CATAATTAACAAAAGGATTT+AGG | - | chr3_1:28999014-28999033 | None:intergenic | 20.0% |
| !!! | AATCCTTTTGTTAATTATGA+TGG | + | chr3_1:28999015-28999034 | Msa0355170:intron | 20.0% |
| !! | TATCAAAATAGGTATATGTA+TGG | - | chr3_1:28999130-28999149 | None:intergenic | 20.0% |
| !! | TTACATACAAGAGTAAAAAA+AGG | + | chr3_1:28999704-28999723 | Msa0355170:CDS | 20.0% |
| !!! | ACAACAATTTTCTAATACAA+AGG | + | chr3_1:28999879-28999898 | Msa0355170:CDS | 20.0% |
| !!! | CAACAATTTTCTAATACAAA+GGG | + | chr3_1:28999880-28999899 | Msa0355170:CDS | 20.0% |
| ! | CTCTTTGATATTAAATAGTG+TGG | - | chr3_1:28996488-28996507 | None:intergenic | 25.0% |
| ! | TATCAAACAAAGAAACCTTA+GGG | - | chr3_1:28996633-28996652 | None:intergenic | 25.0% |
| ! | ATATCAAACAAAGAAACCTT+AGG | - | chr3_1:28996634-28996653 | None:intergenic | 25.0% |
| ! | ATCATACCTTAAAAAAGTGA+CGG | - | chr3_1:28996764-28996783 | None:intergenic | 25.0% |
| ! | ATAATCATTGAATGACTAAG+TGG | + | chr3_1:28997072-28997091 | Msa0355170:intron | 25.0% |
| !!! | AACCCCTTAATTTCTTTTTT+TGG | + | chr3_1:28997275-28997294 | Msa0355170:intron | 25.0% |
| !!! | AATATCCATCTAAAAGCATT+AGG | + | chr3_1:28997334-28997353 | Msa0355170:CDS | 25.0% |
| !!! | AAAAGCATTAGGTTTACTTA+CGG | + | chr3_1:28997345-28997364 | Msa0355170:CDS | 25.0% |
| !! | TTTTCAGCATAATATGCAAA+AGG | + | chr3_1:28997596-28997615 | Msa0355170:intron | 25.0% |
| ! | AGTTAATATCAAACCATACT+TGG | - | chr3_1:28997655-28997674 | None:intergenic | 25.0% |
| !!! | GATATTAACTTATTTTGTCG+TGG | + | chr3_1:28997665-28997684 | Msa0355170:intron | 25.0% |
| ! | TCACATTTAATTGAACAATC+AGG | - | chr3_1:28997899-28997918 | None:intergenic | 25.0% |
| ! | TGATTGTTCAATTAAATGTG+AGG | + | chr3_1:28997898-28997917 | Msa0355170:CDS | 25.0% |
| !! | TCTAAATCCTTTTAACAGTT+TGG | - | chr3_1:28998596-28998615 | None:intergenic | 25.0% |
| ! | TTTATCACTAGAAATGATCT+AGG | + | chr3_1:28998625-28998644 | Msa0355170:intron | 25.0% |
| ! | CTAAATAGTATACACAATTG+CGG | + | chr3_1:28998762-28998781 | Msa0355170:intron | 25.0% |
| ! | AAAAAAAGTGAACGACAAAA+AGG | - | chr3_1:28998863-28998882 | None:intergenic | 25.0% |
| ! | TCTCCATCATAATTAACAAA+AGG | - | chr3_1:28999021-28999040 | None:intergenic | 25.0% |
| !!! | TACCTATTTTGATAGTTTTG+TGG | + | chr3_1:28999136-28999155 | Msa0355170:intron | 25.0% |
| ! | ACAAATCGATAGAAATAAAG+AGG | + | chr3_1:28999485-28999504 | Msa0355170:CDS | 25.0% |
| !!! | CTTTTTCTCTTGTTTGTAAT+AGG | - | chr3_1:28999562-28999581 | None:intergenic | 25.0% |
| ! | ATTACAAACAAGAGAAAAAG+AGG | + | chr3_1:28999562-28999581 | Msa0355170:CDS | 25.0% |
| !!! | ATTACAGTTGGATTCTTTTT+TGG | - | chr3_1:28999592-28999611 | None:intergenic | 25.0% |
| !! | CCATCTTTTGAATTCTTTTT+CGG | - | chr3_1:28999742-28999761 | None:intergenic | 25.0% |
| !! | TAGGTTGGATATTAATCATA+GGG | + | chr3_1:29000032-29000051 | Msa0355170:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | + | chr3_1:28996293-28996312 | Msa0355170:five_prime_UTR | 30.0% |
| AATTGCAAACAAGAGAGTAA+TGG | + | chr3_1:28996435-28996454 | Msa0355170:exon | 30.0% | |
| TAAATAGTGTGGCAAAAGTT+AGG | - | chr3_1:28996477-28996496 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAAAAGACGA+AGG | + | chr3_1:28996519-28996538 | Msa0355170:CDS | 30.0% | |
| !!! | TTTCTTCCGTCACTTTTTTA+AGG | + | chr3_1:28996755-28996774 | Msa0355170:CDS | 30.0% |
| GTTAATCTGTTGTGAAGAAA+TGG | + | chr3_1:28996827-28996846 | Msa0355170:intron | 30.0% | |
| TTATAACCAACTCAAAGAGT+TGG | - | chr3_1:28996991-28997010 | None:intergenic | 30.0% | |
| !! | AACTCTTTGAGTTGGTTATA+AGG | + | chr3_1:28996990-28997009 | Msa0355170:intron | 30.0% |
| GATTGGATAGACATAATTGT+AGG | - | chr3_1:28997100-28997119 | None:intergenic | 30.0% | |
| AATATTTACTTGAAGAGGGA+AGG | + | chr3_1:28997121-28997140 | Msa0355170:intron | 30.0% | |
| ATATTTACTTGAAGAGGGAA+GGG | + | chr3_1:28997122-28997141 | Msa0355170:intron | 30.0% | |
| AAAGAAATTAAGGGGTTGTT+TGG | - | chr3_1:28997272-28997291 | None:intergenic | 30.0% | |
| ! | GTAAACCTAATGCTTTTAGA+TGG | - | chr3_1:28997342-28997361 | None:intergenic | 30.0% |
| ATTAGGTTTACTTACGGAAT+TGG | + | chr3_1:28997351-28997370 | Msa0355170:CDS | 30.0% | |
| TTAGGTTTACTTACGGAATT+GGG | + | chr3_1:28997352-28997371 | Msa0355170:CDS | 30.0% | |
| CTCTAATTTAATTGTTTGCC+AGG | + | chr3_1:28997475-28997494 | Msa0355170:intron | 30.0% | |
| ATATACTATAACTTCATGCC+TGG | - | chr3_1:28997496-28997515 | None:intergenic | 30.0% | |
| ! | TCGCTGATTATTGTTTAACT+TGG | + | chr3_1:28997785-28997804 | Msa0355170:intron | 30.0% |
| !! | AGTCAATTCTGTCTTTTTCA+TGG | + | chr3_1:28998030-28998049 | Msa0355170:intron | 30.0% |
| !! | TTATTTGAAGTTTGATGGTG+AGG | + | chr3_1:28998086-28998105 | Msa0355170:intron | 30.0% |
| TAGCAGTAAAACATAGTGTA+CGG | + | chr3_1:28998209-28998228 | Msa0355170:intron | 30.0% | |
| TACGGCATATATTATAAGCA+AGG | + | chr3_1:28998227-28998246 | Msa0355170:intron | 30.0% | |
| ACGGCATATATTATAAGCAA+GGG | + | chr3_1:28998228-28998247 | Msa0355170:intron | 30.0% | |
| ACATAATTGTAGAATAGAGG+TGG | + | chr3_1:28998253-28998272 | Msa0355170:intron | 30.0% | |
| ATTAACCTAAAGGATTCAAG+TGG | + | chr3_1:28998359-28998378 | Msa0355170:intron | 30.0% | |
| TTAACCTAAAGGATTCAAGT+GGG | + | chr3_1:28998360-28998379 | Msa0355170:intron | 30.0% | |
| AATGCGTTAAAGAGAAAGTT+TGG | + | chr3_1:28998480-28998499 | Msa0355170:intron | 30.0% | |
| ATGCGTTAAAGAGAAAGTTT+GGG | + | chr3_1:28998481-28998500 | Msa0355170:intron | 30.0% | |
| AATAGGTATATGTATGGAGT+AGG | - | chr3_1:28999124-28999143 | None:intergenic | 30.0% | |
| GACCACAAAACTATCAAAAT+AGG | - | chr3_1:28999141-28999160 | None:intergenic | 30.0% | |
| TAAACCAAGTATCAGAAAGA+AGG | - | chr3_1:28999286-28999305 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATAAGATGAACC+AGG | - | chr3_1:28999334-28999353 | None:intergenic | 30.0% |
| TGGTTCATCTTATCACAAAA+TGG | + | chr3_1:28999333-28999352 | Msa0355170:CDS | 30.0% | |
| GGTTCATCTTATCACAAAAT+GGG | + | chr3_1:28999334-28999353 | Msa0355170:CDS | 30.0% | |
| TATGGTGTCTTCTAAATATC+AGG | + | chr3_1:28999389-28999408 | Msa0355170:CDS | 30.0% | |
| ATGGTGTCTTCTAAATATCA+GGG | + | chr3_1:28999390-28999409 | Msa0355170:CDS | 30.0% | |
| ! | TTTTCAGTAGGATTCTTTCT+AGG | - | chr3_1:28999523-28999542 | None:intergenic | 30.0% |
| AAGAGTAAAAAAAGGCCTAA+AGG | + | chr3_1:28999712-28999731 | Msa0355170:CDS | 30.0% | |
| CCGAAAAAGAATTCAAAAGA+TGG | + | chr3_1:28999739-28999758 | Msa0355170:CDS | 30.0% | |
| ! | ACAAATTGGTTCTCACAATT+TGG | - | chr3_1:28999778-28999797 | None:intergenic | 30.0% |
| GAAATAAATTCAGCTGAATC+TGG | - | chr3_1:28999820-28999839 | None:intergenic | 30.0% | |
| ! | GTAGGTTGGATATTAATCAT+AGG | + | chr3_1:29000031-29000050 | Msa0355170:CDS | 30.0% |
| TTCTCACACTGAATCAATAA+TGG | - | chr3_1:29000087-29000106 | None:intergenic | 30.0% | |
| ! | AATGCTACATTTTGTGGAAT+GGG | - | chr3_1:29000168-29000187 | None:intergenic | 30.0% |
| AAATGCCCTTTACTTTACCT+AGG | - | chr3_1:28996313-28996332 | None:intergenic | 35.0% | |
| GGCATTTACCTTTCACAAAA+GGG | + | chr3_1:28996326-28996345 | Msa0355170:five_prime_UTR | 35.0% | |
| ACCTTTCACAAAAGGGATTA+AGG | + | chr3_1:28996333-28996352 | Msa0355170:five_prime_UTR | 35.0% | |
| CGTTGTTTATCAACAGAACA+GGG | + | chr3_1:28996356-28996375 | Msa0355170:five_prime_UTR | 35.0% | |
| AGGGTTTGAATATCAGTTCT+GGG | + | chr3_1:28996392-28996411 | Msa0355170:five_prime_UTR | 35.0% | |
| ! | AAACAAGAGAGTAATGGAAG+AGG | + | chr3_1:28996441-28996460 | Msa0355170:exon | 35.0% |
| ! | CGAGAATTTCTTTGAAGACA+TGG | + | chr3_1:28996660-28996679 | Msa0355170:CDS | 35.0% |
| TGTTCTTGAGCAATACGATT+TGG | + | chr3_1:28996861-28996880 | Msa0355170:intron | 35.0% | |
| ! | AGAGTTGGTTAGGATTGATT+AGG | - | chr3_1:28996976-28996995 | None:intergenic | 35.0% |
| TATGAACCGAATCTCTAAGT+TGG | + | chr3_1:28997189-28997208 | Msa0355170:intron | 35.0% | |
| ATGAACCGAATCTCTAAGTT+GGG | + | chr3_1:28997190-28997209 | Msa0355170:intron | 35.0% | |
| ACCATTAAATGTGCAGAGAA+TGG | + | chr3_1:28997301-28997320 | Msa0355170:intron | 35.0% | |
| TCCATTCTCTGCACATTTAA+TGG | - | chr3_1:28997305-28997324 | None:intergenic | 35.0% | |
| TTAAATGTGCAGAGAATGGA+AGG | + | chr3_1:28997305-28997324 | Msa0355170:intron | 35.0% | |
| TCAGCATAATATGCAAAAGG+AGG | + | chr3_1:28997599-28997618 | Msa0355170:intron | 35.0% | |
| ATACTTGGATTCTTGAGGTT+TGG | - | chr3_1:28997640-28997659 | None:intergenic | 35.0% | |
| AAACCTCAAGAATCCAAGTA+TGG | + | chr3_1:28997639-28997658 | Msa0355170:intron | 35.0% | |
| AAACCATACTTGGATTCTTG+AGG | - | chr3_1:28997645-28997664 | None:intergenic | 35.0% | |
| AACTTGGCTAAACACTTTGT+TGG | + | chr3_1:28997801-28997820 | Msa0355170:intron | 35.0% | |
| AGAGACTTTGTGATGAATGT+TGG | + | chr3_1:28997827-28997846 | Msa0355170:intron | 35.0% | |
| TGTGATGTTTCATACGTTGA+GGG | + | chr3_1:28998058-28998077 | Msa0355170:intron | 35.0% | |
| CTCTTAAAAGAACAATACGC+TGG | - | chr3_1:28998137-28998156 | None:intergenic | 35.0% | |
| CGGCATATATTATAAGCAAG+GGG | + | chr3_1:28998229-28998248 | Msa0355170:intron | 35.0% | |
| GGCACATAATTGTAGAATAG+AGG | + | chr3_1:28998250-28998269 | Msa0355170:intron | 35.0% | |
| GTGTTGAATTTGGTATGCTA+TGG | - | chr3_1:28998289-28998308 | None:intergenic | 35.0% | |
| ACAGAGCGAAATTAACCTAA+AGG | + | chr3_1:28998349-28998368 | Msa0355170:intron | 35.0% | |
| ! | GTAATTTTCGATCACAAAGC+AGG | - | chr3_1:28998407-28998426 | None:intergenic | 35.0% |
| AAATGGAAAAACACTGCCTT+AGG | + | chr3_1:28998522-28998541 | Msa0355170:intron | 35.0% | |
| GATATAGTACTATTGCTGAG+AGG | - | chr3_1:28998709-28998728 | None:intergenic | 35.0% | |
| CTATCAAATAGCGACTATAG+TGG | - | chr3_1:28998733-28998752 | None:intergenic | 35.0% | |
| GACATTTGGCATACAGAAAA+TGG | - | chr3_1:28998931-28998950 | None:intergenic | 35.0% | |
| ! | GTTAATTATGATGGAGACAC+TGG | + | chr3_1:28999024-28999043 | Msa0355170:intron | 35.0% |
| TTATTTCCTACTTCCAAGTC+TGG | - | chr3_1:28999230-28999249 | None:intergenic | 35.0% | |
| ATGACCTTCTTTCTGATACT+TGG | + | chr3_1:28999279-28999298 | Msa0355170:intron | 35.0% | |
| TAGAAGACACCATATTTGCA+CGG | - | chr3_1:28999383-28999402 | None:intergenic | 35.0% | |
| !!! | AGGTTTTTTTTCCTTCTTCC+CGG | - | chr3_1:28999443-28999462 | None:intergenic | 35.0% |
| !!! | TTTGTGCACGTGTCTTTTTT+AGG | - | chr3_1:28999463-28999482 | None:intergenic | 35.0% |
| ATAGAAATAAAGAGGCCTAG+AGG | + | chr3_1:28999493-28999512 | Msa0355170:CDS | 35.0% | |
| !! | ATTGCTTCGTTGTTTTCAGT+AGG | - | chr3_1:28999535-28999554 | None:intergenic | 35.0% |
| CAGTGGATAGTACAAATTGT+GGG | + | chr3_1:28999614-28999633 | Msa0355170:CDS | 35.0% | |
| !!! | TTCTTTTTCGGTCTTCCTTT+AGG | - | chr3_1:28999730-28999749 | None:intergenic | 35.0% |
| GAACAGTAAGAGGAACAAAT+TGG | - | chr3_1:28999792-28999811 | None:intergenic | 35.0% | |
| GCATTCTTTCCCTTTGTATT+CGG | - | chr3_1:28999892-28999911 | None:intergenic | 35.0% | |
| AAACTCTTGTTGCAAGAAGT+AGG | + | chr3_1:29000013-29000032 | Msa0355170:CDS | 35.0% | |
| ATAATGGCCTACTTGTATCT+GGG | - | chr3_1:29000071-29000090 | None:intergenic | 35.0% | |
| AATAATGGCCTACTTGTATC+TGG | - | chr3_1:29000072-29000091 | None:intergenic | 35.0% | |
| ! | ATTGATTCAGTGTGAGAATG+AGG | + | chr3_1:29000089-29000108 | Msa0355170:CDS | 35.0% |
| ! | CAATGCTACATTTTGTGGAA+TGG | - | chr3_1:29000169-29000188 | None:intergenic | 35.0% |
| TGTCCACCTAGGTAAAGTAA+AGG | + | chr3_1:28996304-28996323 | Msa0355170:five_prime_UTR | 40.0% | |
| GTCCACCTAGGTAAAGTAAA+GGG | + | chr3_1:28996305-28996324 | Msa0355170:five_prime_UTR | 40.0% | |
| GGGCATTTACCTTTCACAAA+AGG | + | chr3_1:28996325-28996344 | Msa0355170:five_prime_UTR | 40.0% | |
| ! | GCCTTAATCCCTTTTGTGAA+AGG | - | chr3_1:28996337-28996356 | None:intergenic | 40.0% |
| GCGTTGTTTATCAACAGAAC+AGG | + | chr3_1:28996355-28996374 | Msa0355170:five_prime_UTR | 40.0% | |
| CAGAACTGATATTCAAACCC+TGG | - | chr3_1:28996393-28996412 | None:intergenic | 40.0% | |
| CAGGGTTTGAATATCAGTTC+TGG | + | chr3_1:28996391-28996410 | Msa0355170:five_prime_UTR | 40.0% | |
| ! | ACTCTCTTGTTTGCAATTGC+AGG | - | chr3_1:28996433-28996452 | None:intergenic | 40.0% |
| ACACCATTGCTAAACTCTGT+GGG | + | chr3_1:28996683-28996702 | Msa0355170:CDS | 40.0% | |
| ATGTATCAGCTATGATGCTC+TGG | + | chr3_1:28996901-28996920 | Msa0355170:intron | 40.0% | |
| TCCTAACCAACTCTTTGAGT+TGG | + | chr3_1:28996982-28997001 | Msa0355170:intron | 40.0% | |
| ! | ACCAACTCAAAGAGTTGGTT+AGG | - | chr3_1:28996986-28997005 | None:intergenic | 40.0% |
| AGGCAGTGCTAATCTATGTA+AGG | + | chr3_1:28997010-28997029 | Msa0355170:intron | 40.0% | |
| CGAAACCCAACTTAGAGATT+CGG | - | chr3_1:28997198-28997217 | None:intergenic | 40.0% | |
| TATAGGAGGACTTGTACCTT+AGG | - | chr3_1:28997450-28997469 | None:intergenic | 40.0% | |
| GACTTTGTGATGAATGTTGG+AGG | + | chr3_1:28997830-28997849 | Msa0355170:CDS | 40.0% | |
| TGAATGTTGGAGGTTCTGTA+TGG | + | chr3_1:28997840-28997859 | Msa0355170:CDS | 40.0% | |
| GAATGTTGGAGGTTCTGTAT+GGG | + | chr3_1:28997841-28997860 | Msa0355170:CDS | 40.0% | |
| GTTCTGTATGGGCATTAGAT+TGG | + | chr3_1:28997852-28997871 | Msa0355170:CDS | 40.0% | |
| GTGTGATGTTTCATACGTTG+AGG | + | chr3_1:28998057-28998076 | Msa0355170:intron | 40.0% | |
| !! | TGAAGTTTGATGGTGAGGTA+AGG | + | chr3_1:28998091-28998110 | Msa0355170:intron | 40.0% |
| !! | GAAGTTTGATGGTGAGGTAA+GGG | + | chr3_1:28998092-28998111 | Msa0355170:intron | 40.0% |
| !! | AAGTTTGATGGTGAGGTAAG+GGG | + | chr3_1:28998093-28998112 | Msa0355170:intron | 40.0% |
| GCTACTTCTACTCACACATT+CGG | - | chr3_1:28998193-28998212 | None:intergenic | 40.0% | |
| ATACATGTCCAAACCACCTA+AGG | - | chr3_1:28998541-28998560 | None:intergenic | 40.0% | |
| ! | TGGTTTGGACATGTATTGAG+AGG | + | chr3_1:28998545-28998564 | Msa0355170:intron | 40.0% |
| GTGTTGTCAATCTCAGATAG+TGG | + | chr3_1:28998671-28998690 | Msa0355170:intron | 40.0% | |
| ! | CACTATAACGTGGTGGAATT+TGG | - | chr3_1:28998793-28998812 | None:intergenic | 40.0% |
| CAAATTCCACCACGTTATAG+TGG | + | chr3_1:28998791-28998810 | Msa0355170:intron | 40.0% | |
| GATGCTATACCACTATAACG+TGG | - | chr3_1:28998803-28998822 | None:intergenic | 40.0% | |
| AAGGAATTACCCACATCACA+GGG | - | chr3_1:28998844-28998863 | None:intergenic | 40.0% | |
| AAAGGAATTACCCACATCAC+AGG | - | chr3_1:28998845-28998864 | None:intergenic | 40.0% | |
| TTGGCATACAGAAAATGGTG+AGG | - | chr3_1:28998926-28998945 | None:intergenic | 40.0% | |
| ! | CATGGTGTCAACTAGCTATT+AGG | - | chr3_1:28998971-28998990 | None:intergenic | 40.0% |
| CACCATGTTAAATTACCACC+TGG | + | chr3_1:28998984-28999003 | Msa0355170:intron | 40.0% | |
| AGCCAGGTGGTAATTTAACA+TGG | - | chr3_1:28998989-28999008 | None:intergenic | 40.0% | |
| CAAAAGGATTTAGGTAAGCC+AGG | - | chr3_1:28999005-28999024 | None:intergenic | 40.0% | |
| ACTTACCTTTGTTCCAGACT+TGG | + | chr3_1:28999214-28999233 | Msa0355170:intron | 40.0% | |
| ! | TACTTCCAAGTCTGGAACAA+AGG | - | chr3_1:28999222-28999241 | None:intergenic | 40.0% |
| TTTGTTCCAGACTTGGAAGT+AGG | + | chr3_1:28999221-28999240 | Msa0355170:intron | 40.0% | |
| TTGTGATAAGATGAACCAGG+CGG | - | chr3_1:28999331-28999350 | None:intergenic | 40.0% | |
| !! | GAAGAAGTATCATATCTCCC+CGG | + | chr3_1:28999421-28999440 | Msa0355170:CDS | 40.0% |
| !! | AAGAAGTATCATATCTCCCC+GGG | + | chr3_1:28999422-28999441 | Msa0355170:CDS | 40.0% |
| !!! | GTTTTTTTTCCTTCTTCCCG+GGG | - | chr3_1:28999441-28999460 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTTCCTTCTTCCC+GGG | - | chr3_1:28999442-28999461 | None:intergenic | 40.0% |
| AAATAAAGAGGCCTAGAGGA+AGG | + | chr3_1:28999497-28999516 | Msa0355170:CDS | 40.0% | |
| GAATCCAACTGTAATAGCAG+TGG | + | chr3_1:28999597-28999616 | Msa0355170:CDS | 40.0% | |
| CTATCCACTGCTATTACAGT+TGG | - | chr3_1:28999604-28999623 | None:intergenic | 40.0% | |
| GCAGTGGATAGTACAAATTG+TGG | + | chr3_1:28999613-28999632 | Msa0355170:CDS | 40.0% | |
| ACTACCAGATGCTATGTACT+TGG | - | chr3_1:28999641-28999660 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTGTCTCAAAT+GGG | + | chr3_1:28999650-28999669 | Msa0355170:CDS | 40.0% |
| TCTGGAAGTTGAACAGTAAG+AGG | - | chr3_1:28999802-28999821 | None:intergenic | 40.0% | |
| ATTTCTCCAGATGTAGTTCC+TGG | + | chr3_1:28999835-28999854 | Msa0355170:CDS | 40.0% | |
| AAAGCTGCTGCGAATACAAA+GGG | + | chr3_1:28999916-28999935 | Msa0355170:CDS | 40.0% | |
| AAAGCTGCTCCGAATACAAA+GGG | + | chr3_1:28999952-28999971 | Msa0355170:CDS | 40.0% | |
| TCTTGTTGCAAGAAGTAGGT+TGG | + | chr3_1:29000017-29000036 | Msa0355170:CDS | 40.0% | |
| ATGCTTGAGGTTCCAATACA+GGG | - | chr3_1:29000137-29000156 | None:intergenic | 40.0% | |
| ! | CTAGGCAATGCTACATTTTG+TGG | - | chr3_1:29000174-29000193 | None:intergenic | 40.0% |
| ! | ATGCCTAGCTCATAATGGAA+AGG | + | chr3_1:29000203-29000222 | Msa0355170:CDS | 40.0% |
| ! | TCATAATGGAAAGGTGGCAT+GGG | + | chr3_1:29000212-29000231 | Msa0355170:CDS | 40.0% |
| GAGGAATCAAGATTGCTAAG+AGG | - | chr3_1:29000252-29000271 | None:intergenic | 40.0% | |
| TGCCCTTTACTTTACCTAGG+TGG | - | chr3_1:28996310-28996329 | None:intergenic | 45.0% | |
| !!! | AACAGGGTTTTAGCTTGTCC+AGG | + | chr3_1:28996372-28996391 | Msa0355170:five_prime_UTR | 45.0% |
| !!! | ACAGGGTTTTAGCTTGTCCA+GGG | + | chr3_1:28996373-28996392 | Msa0355170:five_prime_UTR | 45.0% |
| TGCTGATGATTCTGCTACAG+CGG | + | chr3_1:28996564-28996583 | Msa0355170:CDS | 45.0% | |
| GACACCATTGCTAAACTCTG+TGG | + | chr3_1:28996682-28996701 | Msa0355170:CDS | 45.0% | |
| CACCATTGCTAAACTCTGTG+GGG | + | chr3_1:28996684-28996703 | Msa0355170:CDS | 45.0% | |
| TTCCCCACAGAGTTTAGCAA+TGG | - | chr3_1:28996689-28996708 | None:intergenic | 45.0% | |
| GGCGATAGTGATACAAACTG+AGG | - | chr3_1:28996955-28996974 | None:intergenic | 45.0% | |
| TTGAAGAGGGAAGGGAAAGT+TGG | + | chr3_1:28997130-28997149 | Msa0355170:intron | 45.0% | |
| ACAGTGGCAGATGAAAACTG+AGG | - | chr3_1:28997426-28997445 | None:intergenic | 45.0% | |
| TTCATCTGCCACTGTTCCTA+AGG | + | chr3_1:28997431-28997450 | Msa0355170:CDS | 45.0% | |
| GACTTGTACCTTAGGAACAG+TGG | - | chr3_1:28997442-28997461 | None:intergenic | 45.0% | |
| ATGCAAAAGGAGGAGCAACT+TGG | + | chr3_1:28997609-28997628 | Msa0355170:CDS | 45.0% | |
| TGCAAAAGGAGGAGCAACTT+GGG | + | chr3_1:28997610-28997629 | Msa0355170:CDS | 45.0% | |
| ! | ATTGGTGTCCTAGGATGCAT+GGG | + | chr3_1:28997870-28997889 | Msa0355170:CDS | 45.0% |
| ! | GGTAAGGGGCACATAGTATA+TGG | + | chr3_1:28998107-28998126 | Msa0355170:intron | 45.0% |
| CTCACCCACTTGAATCCTTT+AGG | - | chr3_1:28998367-28998386 | None:intergenic | 45.0% | |
| TTCAAGTGGGTGAGATGCAA+AGG | + | chr3_1:28998373-28998392 | Msa0355170:intron | 45.0% | |
| TCAAGTGGGTGAGATGCAAA+GGG | + | chr3_1:28998374-28998393 | Msa0355170:intron | 45.0% | |
| TGGAAAAACACTGCCTTAGG+TGG | + | chr3_1:28998525-28998544 | Msa0355170:intron | 45.0% | |
| AAACACTGCCTTAGGTGGTT+TGG | + | chr3_1:28998530-28998549 | Msa0355170:intron | 45.0% | |
| GCTATACCACTATAACGTGG+TGG | - | chr3_1:28998800-28998819 | None:intergenic | 45.0% | |
| TGCTATTATCCCCTGTGATG+TGG | + | chr3_1:28998831-28998850 | Msa0355170:intron | 45.0% | |
| GCTATTATCCCCTGTGATGT+GGG | + | chr3_1:28998832-28998851 | Msa0355170:intron | 45.0% | |
| AGGAATTACCCACATCACAG+GGG | - | chr3_1:28998843-28998862 | None:intergenic | 45.0% | |
| ATGCCAAATGTCAGATGCCA+TGG | + | chr3_1:28998939-28998958 | Msa0355170:intron | 45.0% | |
| AGTCCATGGCATCTGACATT+TGG | - | chr3_1:28998945-28998964 | None:intergenic | 45.0% | |
| AATGTCAGATGCCATGGACT+CGG | + | chr3_1:28998945-28998964 | Msa0355170:intron | 45.0% | |
| AAGGATTTAGGTAAGCCAGG+TGG | - | chr3_1:28999002-28999021 | None:intergenic | 45.0% | |
| AAAATGGGTGCCTCACTTAC+TGG | + | chr3_1:28999349-28999368 | Msa0355170:CDS | 45.0% | |
| TTCTTTCTAGGCCTTCCTCT+AGG | - | chr3_1:28999511-28999530 | None:intergenic | 45.0% | |
| ! | GCATCTGGTAGTGTCTCAAA+TGG | + | chr3_1:28999649-28999668 | Msa0355170:CDS | 45.0% |
| TGATGTTCATCAGAACTGCC+AGG | - | chr3_1:28999856-28999875 | None:intergenic | 45.0% | |
| TGTATTCGCAGCAGCTTTCT+TGG | - | chr3_1:28999914-28999933 | None:intergenic | 45.0% | |
| GAAAGCTGCTGCGAATACAA+AGG | + | chr3_1:28999915-28999934 | Msa0355170:CDS | 45.0% | |
| GAAAGCTGCTCCGAATACAA+AGG | + | chr3_1:28999951-28999970 | Msa0355170:CDS | 45.0% | |
| GTATGCAGAAGCAGCTTTCT+TGG | - | chr3_1:28999986-29000005 | None:intergenic | 45.0% | |
| GTTGTAGCCCAGATACAAGT+AGG | + | chr3_1:29000061-29000080 | Msa0355170:CDS | 45.0% | |
| GAGGCAAATCATCAACCACA+TGG | + | chr3_1:29000108-29000127 | Msa0355170:CDS | 45.0% | |
| GATGCTTGAGGTTCCAATAC+AGG | - | chr3_1:29000138-29000157 | None:intergenic | 45.0% | |
| ATGGGACAAGTAGATGCTTG+AGG | - | chr3_1:29000150-29000169 | None:intergenic | 45.0% | |
| GTGTCATGCCTAGCTCATAA+TGG | + | chr3_1:29000198-29000217 | Msa0355170:CDS | 45.0% | |
| CCACCTTTCCATTATGAGCT+AGG | - | chr3_1:29000209-29000228 | None:intergenic | 45.0% | |
| ! | CCTAGCTCATAATGGAAAGG+TGG | + | chr3_1:29000206-29000225 | Msa0355170:CDS | 45.0% |
| ! | CTCATAATGGAAAGGTGGCA+TGG | + | chr3_1:29000211-29000230 | Msa0355170:CDS | 45.0% |
| !! | TTCCTCATGCAAGCATCGAA+TGG | + | chr3_1:29000266-29000285 | Msa0355170:CDS | 45.0% |
| !! | TCCTCATGCAAGCATCGAAT+GGG | + | chr3_1:29000267-29000286 | Msa0355170:CDS | 45.0% |
| ! | GGCTATCTTGCTGTCTTGTT+GGG | + | chr3_1:29000288-29000307 | Msa0355170:CDS | 45.0% |
| GCTACAGCGGCAAATGATGA+AGG | + | chr3_1:28996577-28996596 | Msa0355170:CDS | 50.0% | |
| ACAGCGGCAAATGATGAAGG+TGG | + | chr3_1:28996580-28996599 | Msa0355170:CDS | 50.0% | |
| ! | GCAAATGATGAAGGTGGTGG+TGG | + | chr3_1:28996586-28996605 | Msa0355170:CDS | 50.0% |
| GCAAAAGGAGGAGCAACTTG+GGG | + | chr3_1:28997611-28997630 | Msa0355170:CDS | 50.0% | |
| ! | GGGCATTAGATTGGTGTCCT+AGG | + | chr3_1:28997861-28997880 | Msa0355170:CDS | 50.0% |
| ! | GATTGGTGTCCTAGGATGCA+TGG | + | chr3_1:28997869-28997888 | Msa0355170:CDS | 50.0% |
| ! | TTGGTGTCCTAGGATGCATG+GGG | + | chr3_1:28997871-28997890 | Msa0355170:CDS | 50.0% |
| CAAGTGGGTGAGATGCAAAG+GGG | + | chr3_1:28998375-28998394 | Msa0355170:intron | 50.0% | |
| TAGCTATTAGGCCGAGTCCA+TGG | - | chr3_1:28998959-28998978 | None:intergenic | 50.0% | |
| ATCATATCTCCCCGGGAAGA+AGG | + | chr3_1:28999429-28999448 | Msa0355170:CDS | 50.0% | |
| GGGACCAAGTACATAGCATC+TGG | + | chr3_1:28999634-28999653 | Msa0355170:CDS | 50.0% | |
| GAACTGCCAGGAACTACATC+TGG | - | chr3_1:28999844-28999863 | None:intergenic | 50.0% | |
| ACCACATGGTAGCCCTGTAT+TGG | + | chr3_1:29000122-29000141 | Msa0355170:CDS | 50.0% | |
| TCCAATACAGGGCTACCATG+TGG | - | chr3_1:29000126-29000145 | None:intergenic | 50.0% | |
| GCTAGGCATGACACAACTCT+AGG | - | chr3_1:29000192-29000211 | None:intergenic | 50.0% | |
| AGGTGGCATGGGATGTCAAA+TGG | + | chr3_1:29000223-29000242 | Msa0355170:CDS | 50.0% | |
| TGGCATGGGATGTCAAATGG+AGG | + | chr3_1:29000226-29000245 | Msa0355170:CDS | 50.0% | |
| ! | GGGCTATCTTGCTGTCTTGT+TGG | + | chr3_1:29000287-29000306 | Msa0355170:CDS | 50.0% |
| ! | CTTGCTGTCTTGTTGGGCAA+TGG | + | chr3_1:29000294-29000313 | Msa0355170:CDS | 50.0% |
| CTTGTTGGGCAATGGATCTC+TGG | + | chr3_1:29000302-29000321 | Msa0355170:CDS | 50.0% | |
| GCGGCAAATGATGAAGGTGG+TGG | + | chr3_1:28996583-28996602 | Msa0355170:CDS | 55.0% | |
| ! | CTTAGGGTTAGCACCACTGC+TGG | - | chr3_1:28996617-28996636 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGCTAACCCTA+AGG | + | chr3_1:28996615-28996634 | Msa0355170:CDS | 55.0% |
| !! | GCAGAGGTGCCGTGCAAATA+TGG | + | chr3_1:28999371-28999390 | Msa0355170:CDS | 55.0% |
| GCCCATTCGATGCTTGCATG+AGG | - | chr3_1:29000271-29000290 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTAGTACCAGCAG+TGG | + | chr3_1:28996601-28996620 | Msa0355170:CDS | 60.0% |
| TCAGGCTCCCCATGCATCCT+AGG | - | chr3_1:28997881-28997900 | None:intergenic | 60.0% | |
| GGTGCCTCACTTACTGGCAG+AGG | + | chr3_1:28999355-28999374 | Msa0355170:CDS | 60.0% | |
| GGCACCTCTGCCAGTAAGTG+AGG | - | chr3_1:28999362-28999381 | None:intergenic | 60.0% | |
| GCTGTTGCTGCTCATCCGCC+TGG | + | chr3_1:28999313-28999332 | Msa0355170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 28996275 | 29000332 | 28996275 | ID=Msa0355170;Name=Msa0355170 |
| chr3_1 | mRNA | 28996275 | 29000332 | 28996275 | ID=Msa0355170-mRNA-1;Parent=Msa0355170;Name=Msa0355170-mRNA-1;_AED=0.35;_eAED=0.35;_QI=179|1|0.8|1|1|1|5|0|542 |
| chr3_1 | exon | 28996275 | 28996776 | 28996275 | ID=Msa0355170-mRNA-1:exon:6070;Parent=Msa0355170-mRNA-1 |
| chr3_1 | exon | 28997317 | 28997452 | 28997317 | ID=Msa0355170-mRNA-1:exon:6071;Parent=Msa0355170-mRNA-1 |
| chr3_1 | exon | 28997603 | 28997655 | 28997603 | ID=Msa0355170-mRNA-1:exon:6072;Parent=Msa0355170-mRNA-1 |
| chr3_1 | exon | 28997829 | 28997919 | 28997829 | ID=Msa0355170-mRNA-1:exon:6073;Parent=Msa0355170-mRNA-1 |
| chr3_1 | exon | 28999307 | 29000332 | 28999307 | ID=Msa0355170-mRNA-1:exon:6074;Parent=Msa0355170-mRNA-1 |
| chr3_1 | five_prime_UTR | 28996275 | 28996453 | 28996275 | ID=Msa0355170-mRNA-1:five_prime_utr;Parent=Msa0355170-mRNA-1 |
| chr3_1 | CDS | 28996454 | 28996776 | 28996454 | ID=Msa0355170-mRNA-1:cds;Parent=Msa0355170-mRNA-1 |
| chr3_1 | CDS | 28997317 | 28997452 | 28997317 | ID=Msa0355170-mRNA-1:cds;Parent=Msa0355170-mRNA-1 |
| chr3_1 | CDS | 28997603 | 28997655 | 28997603 | ID=Msa0355170-mRNA-1:cds;Parent=Msa0355170-mRNA-1 |
| chr3_1 | CDS | 28997829 | 28997919 | 28997829 | ID=Msa0355170-mRNA-1:cds;Parent=Msa0355170-mRNA-1 |
| chr3_1 | CDS | 28999307 | 29000332 | 28999307 | ID=Msa0355170-mRNA-1:cds;Parent=Msa0355170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
