AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0860640


Find 271 sgRNAs with CRISPR-Local

Find 1022 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr5_4 gene 59479051 59495249 59479051 ID=Msa0860640;Name=Msa0860640
chr5_4 mRNA 59479051 59495249 59479051 ID=Msa0860640-mRNA-1;Parent=Msa0860640;Name=Msa0860640-mRNA-1;_AED=0.14;_eAED=0.14;_QI=122|0.96|1|1|0.96|0.96|30|642|1056
chr5_4 exon 59479051 59479734 59479051 ID=Msa0860640-mRNA-1:exon:18312;Parent=Msa0860640-mRNA-1
chr5_4 exon 59479887 59479973 59479887 ID=Msa0860640-mRNA-1:exon:18311;Parent=Msa0860640-mRNA-1
chr5_4 exon 59480095 59480169 59480095 ID=Msa0860640-mRNA-1:exon:18310;Parent=Msa0860640-mRNA-1
chr5_4 exon 59480319 59480435 59480319 ID=Msa0860640-mRNA-1:exon:18309;Parent=Msa0860640-mRNA-1
chr5_4 exon 59480537 59480623 59480537 ID=Msa0860640-mRNA-1:exon:18308;Parent=Msa0860640-mRNA-1
chr5_4 exon 59480791 59480856 59480791 ID=Msa0860640-mRNA-1:exon:18307;Parent=Msa0860640-mRNA-1
chr5_4 exon 59481059 59481124 59481059 ID=Msa0860640-mRNA-1:exon:18306;Parent=Msa0860640-mRNA-1
chr5_4 exon 59481396 59481467 59481396 ID=Msa0860640-mRNA-1:exon:18305;Parent=Msa0860640-mRNA-1
chr5_4 exon 59481634 59481735 59481634 ID=Msa0860640-mRNA-1:exon:18304;Parent=Msa0860640-mRNA-1
chr5_4 exon 59481817 59481994 59481817 ID=Msa0860640-mRNA-1:exon:18303;Parent=Msa0860640-mRNA-1
chr5_4 exon 59482097 59482152 59482097 ID=Msa0860640-mRNA-1:exon:18302;Parent=Msa0860640-mRNA-1
chr5_4 exon 59482390 59482500 59482390 ID=Msa0860640-mRNA-1:exon:18301;Parent=Msa0860640-mRNA-1
chr5_4 exon 59482581 59482649 59482581 ID=Msa0860640-mRNA-1:exon:18300;Parent=Msa0860640-mRNA-1
chr5_4 exon 59482973 59483081 59482973 ID=Msa0860640-mRNA-1:exon:18299;Parent=Msa0860640-mRNA-1
chr5_4 exon 59483166 59483254 59483166 ID=Msa0860640-mRNA-1:exon:18298;Parent=Msa0860640-mRNA-1
chr5_4 exon 59483346 59483423 59483346 ID=Msa0860640-mRNA-1:exon:18297;Parent=Msa0860640-mRNA-1
chr5_4 exon 59483923 59484045 59483923 ID=Msa0860640-mRNA-1:exon:18296;Parent=Msa0860640-mRNA-1
chr5_4 exon 59485913 59486059 59485913 ID=Msa0860640-mRNA-1:exon:18295;Parent=Msa0860640-mRNA-1
chr5_4 exon 59486154 59486232 59486154 ID=Msa0860640-mRNA-1:exon:18294;Parent=Msa0860640-mRNA-1
chr5_4 exon 59487495 59487569 59487495 ID=Msa0860640-mRNA-1:exon:18293;Parent=Msa0860640-mRNA-1
chr5_4 exon 59488156 59488265 59488156 ID=Msa0860640-mRNA-1:exon:18292;Parent=Msa0860640-mRNA-1
chr5_4 exon 59488975 59489073 59488975 ID=Msa0860640-mRNA-1:exon:18291;Parent=Msa0860640-mRNA-1
chr5_4 exon 59490730 59490845 59490730 ID=Msa0860640-mRNA-1:exon:18290;Parent=Msa0860640-mRNA-1
chr5_4 exon 59490993 59491101 59490993 ID=Msa0860640-mRNA-1:exon:18289;Parent=Msa0860640-mRNA-1
chr5_4 exon 59491187 59491405 59491187 ID=Msa0860640-mRNA-1:exon:18288;Parent=Msa0860640-mRNA-1
chr5_4 exon 59491501 59491766 59491501 ID=Msa0860640-mRNA-1:exon:18287;Parent=Msa0860640-mRNA-1
chr5_4 exon 59492487 59492644 59492487 ID=Msa0860640-mRNA-1:exon:18286;Parent=Msa0860640-mRNA-1
chr5_4 exon 59492847 59492991 59492847 ID=Msa0860640-mRNA-1:exon:18285;Parent=Msa0860640-mRNA-1
chr5_4 exon 59494644 59494734 59494644 ID=Msa0860640-mRNA-1:exon:18284;Parent=Msa0860640-mRNA-1
chr5_4 exon 59495098 59495249 59495098 ID=Msa0860640-mRNA-1:exon:18283;Parent=Msa0860640-mRNA-1
chr5_4 five_prime_UTR 59495128 59495249 59495128 ID=Msa0860640-mRNA-1:five_prime_utr;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59495098 59495127 59495098 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59494644 59494734 59494644 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59492847 59492991 59492847 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59492487 59492644 59492487 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59491501 59491766 59491501 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59491187 59491405 59491187 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59490993 59491101 59490993 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59490730 59490845 59490730 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59488975 59489073 59488975 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59488156 59488265 59488156 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59487495 59487569 59487495 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59486154 59486232 59486154 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59485913 59486059 59485913 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59483923 59484045 59483923 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59483346 59483423 59483346 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59483166 59483254 59483166 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59482973 59483081 59482973 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59482581 59482649 59482581 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59482390 59482500 59482390 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59482097 59482152 59482097 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59481817 59481994 59481817 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59481634 59481735 59481634 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59481396 59481467 59481396 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59481059 59481124 59481059 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59480791 59480856 59480791 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59480537 59480623 59480537 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59480319 59480435 59480319 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59480095 59480169 59480095 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59479887 59479973 59479887 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 CDS 59479693 59479734 59479693 ID=Msa0860640-mRNA-1:cds;Parent=Msa0860640-mRNA-1
chr5_4 three_prime_UTR 59479051 59479692 59479051 ID=Msa0860640-mRNA-1:three_prime_utr;Parent=Msa0860640-mRNA-1
Gene Sequence

>Msa0860640

ATGACCATCATGACTCCTGCTCCGATTGACCCACAACAGCAGGAGGATGAAGAGATGCTTGTGCCGCACGCGGTTCCGCATGCGGATTTGGCTGAGAACAATAATCATCAACCAATGGATGTGGTTGCTCAACCTGAAACCGCCAACACTGTGGAGCCTGTTGAGGATCCTTCACCATCAAGATTCACATGGAGAATTGACAACTTTTCTAGGGTGAATTTGAAAAAGCTCTATTCAGATGTATTTGTTGTTGGGAGTTACAAATGGCGTGTACTTATTTTTCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAACTAGTCTGCCCTACGGTTGGAGTAGATATGCACAGTTTAGCTTGGCTGTTGTTAATCAGATCCATAATAAGTACACTGTGAGAAAAGATACGCAGCATCAGTTCAATGCACGGGAAAGTGACTGGGGTTTCACATCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTATGAATGATACTCTTATAATTGAAGCCGAGGTCCTTGTCCGTAGGATTGTTGATTACTGGACATATGATTCAAAAAAGGAGACTGGATATGTTGGGCTTAAGAACCAGGGAGCTACATGCTATATGAATTCTCTGCTTCAAACTCTGTATCATATTCCTTATTTCCGAAAGGCTGTATACCACATGCCTACAACAGAGAATGATATGCCCTCTGGAAGCATCCCCCTGGCTCTGCAAAGTTTGTTCTACAAGCTCCAGTATAGTGACACCAGTGTTGCAACAAAAGAGCTGACAAAATCTTTTGGATGGGATACATATGATTCTTTCTTGCAGCATGATGTTCAAGAACTAAATAGAGTCCTTTGTGAAAAACTTGAAGACAAAATGAAGGCAACTGTCGTTGAGGGAACTATACAGAAATTGTTTGAAGGGCACCATATGAACTACATCGAGTGCATCAATGTGGACTATAAATCAACACGAAAGGAGTCATTTTATGATCTTCAACTTGATGTCAAAGGTTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAGGGGGACAACAAATACCATGCTGAACAATATGGTTTGCAGGATGCTAAGAAAGGTGTCCTGTTCATCGATTTTCCTCCGGTCTTGCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGATCGTTATGAGTTTCCATTGCAACTTGATCTTGATCGTGACAATGGAAAATATCTATCACCTGATGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGCGTTCTGGTTCACAGTGGTGGTGTGCATGGTGGACATTACTATGCTTTTATCAGGCCGACTCTCTCTGATCAGTGGTACAAATTTGATGATGAGAGGGTGACAAAAGAAGACCCTAAACGGGCAATGGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAGACAAATCCCGGATTCAATAACACTCCTTTTAAATTCACCAAATATTCAAATGCTTACATGCTGGTGTATATACGTGAAGCGGACAAGGAAAAAGTAATATGCAATGTGGACGAGAAAGATATTGCTGAGCATTTAAGGGAAGAGGTTGCTAAAGAGTTCGGCATACCTGTACAATTCCAGCGCTTTTGGCTTTGGGCAAAGCGTCAAAACCATACATATCGTCCTAATCGGCCATTGACACAAATTGAGGAAGCACAATCCGTTGGACAATTGAGAGAGATATCGAACAAGGTTCACAATGCAGAATTAAAATTGTTTTTGGAAGTGGAGCGTGGACCGGATTTATGTCCCATTGCACCACCTGAGAAGACAAAGGATGATATATTACTTTTTTTCAAGTTATATGATCCTGAGAAAGAGGAGCTACGTTATGTTGGCAGACTCTTTGTGAACAACACTGGTAAACCATCAGAAATCTTAGCAAGGTTAAATAAAATGGCTGGTTATGATCCTGAAGAAGAGATTGGACTTTATGAGGAAATTAAGTTTGAACCAAACGTGATGTGTGAGCCTATTGACAAGAAATTAACATTTCGAGCAAGCCAGCTTGAAGATGGAGATATTATATGCTTTCAGAAGGCTCCTGCTACGGATAATGAGGAGCATATCCGCTATCCTGATGTGCCTTCTTACTTGGAATATGTGCACAATCGCCAGGTTGTTCACTTTCGGTCCCTAGATAAACCAAAGGAAGATGACTTCTGCCTGGAGATGTCAAGGCTTTTCACATATGATGATGTTGTGGAGAGAGTAGCTGAACAACTTGGTTTGGACGACCCATCCAAAATCAGGCTCACCCCACACAACTGCTATTCTCAACAACCAAAACCCCAGCCTATCAAGTACCGAGGGGTGGAACATTTATCTGATATGCTCGTTCACTACAATCAGACATCCGACATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTTTGAAAACTCTGAAAGTTGCGTTTCATCATGCTACCAAGGATGAAGCGGTTATCCACACCATCAGACTTCCAAAGCAAAGCACTGTAGGAGATGTCCTTGAGGATCTTAAAAAGAAGGTTGAATTGTCTCGTCCTGATACTGAGCTTAGGTTGCTTGAAGTCTTTTATCACAAGATATACAAGGTTTTCCCTCCCAATGAAAAGATTGAAAACATAAATGATCAATACTGGACACTACGAGCCGAGGAGATACCAGAAGAAGAGAAAAATCTCGGTCCCCATGATCGTCTAATCCACGTGTATCATTTTACTAAAGACACTACTCAGAACCAAATGCAAATTCAGAATTTTGGGGAACCTTTTTTCTTGGTCATACACGAATGTGAGACTTTGGCTGAAATTAGATTGCGAATACAGAAGAAGCTTCAAGTTCCAGACGATGAGTTTGTCAAGTGGAAATTTGCTTTTTTCTCATTAGGGCGTCCTGAGTACCTTGAGGACTCTGAAGTTGTATCAAATCGTTTTCAGAGAAGAGACGTATATGGTGCCTGGGAGCAGTATCTTGGCTTGGAGCATACTGATAATGCTCCTAAAAGATCATATGCTGCTAATCAGAATCGTCACACATTTGAGAAGCCAGTAAAGATTTATAATTAG

Protein sequence

>Msa0860640

MTIMTPAPIDPQQQEDEEMLVPHAVPHADLAENNNHQPMDVVAQPETANTVEPVEDPSPSRFTWRIDNFSRVNLKKLYSDVFVVGSYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAVVNQIHNKYTVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLMNDTLIIEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKATVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDPKRAMEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKEKVICNVDEKDIAEHLREEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTQIEEAQSVGQLREISNKVHNAELKLFLEVERGPDLCPIAPPEKTKDDILLFFKLYDPEKEELRYVGRLFVNNTGKPSEILARLNKMAGYDPEEEIGLYEEIKFEPNVMCEPIDKKLTFRASQLEDGDIICFQKAPATDNEEHIRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLFTYDDVVERVAEQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEAVIHTIRLPKQSTVGDVLEDLKKKVELSRPDTELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTTQNQMQIQNFGEPFFLVIHECETLAEIRLRIQKKLQVPDDEFVKWKFAFFSLGRPEYLEDSEVVSNRFQRRDVYGAWEQYLGLEHTDNAPKRSYAANQNRHTFEKPVKIYN*