Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868190 | XP_003598367.2 | 84.175 | 297 | 8 | 2 | 1 | 258 | 1 | 297 | 3.74e-175 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868190 | sp|Q94BZ1|ZIFL1_ARATH | 48.000 | 300 | 98 | 5 | 7 | 258 | 6 | 295 | 4.15e-91 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868190 | G7IVI0 | 84.175 | 297 | 8 | 2 | 1 | 258 | 1 | 297 | 1.79e-175 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010800 | Msa0868190 | 0.818673 | 1.733549e-52 | -8.615850e-47 |
| Msa0789560 | Msa0868190 | 0.803374 | 3.594080e-49 | -8.615850e-47 |
| Msa0376420 | Msa0868190 | 0.814315 | 1.640305e-51 | -8.615850e-47 |
| Msa0516240 | Msa0868190 | 0.811226 | 7.783549e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868190 | MtrunA17_Chr3g0080421 | 84.175 | 297 | 8 | 2 | 1 | 258 | 1 | 297 | 3.44e-179 | 501 |
| Msa0868190 | MtrunA17_Chr8g0364441 | 71.726 | 336 | 17 | 3 | 1 | 258 | 1 | 336 | 5.59e-164 | 462 |
| Msa0868190 | MtrunA17_Chr8g0354831 | 61.409 | 298 | 74 | 4 | 1 | 258 | 1 | 297 | 3.81e-125 | 364 |
| Msa0868190 | MtrunA17_Chr8g0354841 | 60.764 | 288 | 70 | 3 | 10 | 258 | 7 | 290 | 1.95e-122 | 357 |
| Msa0868190 | MtrunA17_Chr8g0354851 | 59.028 | 288 | 75 | 3 | 10 | 258 | 7 | 290 | 3.94e-118 | 347 |
| Msa0868190 | MtrunA17_Chr3g0080431 | 62.752 | 298 | 65 | 6 | 1 | 258 | 1 | 292 | 3.48e-117 | 343 |
| Msa0868190 | MtrunA17_Chr8g0354891 | 57.383 | 298 | 83 | 4 | 1 | 258 | 1 | 294 | 1.20e-110 | 327 |
| Msa0868190 | MtrunA17_Chr3g0123421 | 56.250 | 208 | 52 | 2 | 1 | 169 | 1 | 208 | 4.45e-73 | 222 |
| Msa0868190 | MtrunA17_Chr8g0354861 | 68.254 | 126 | 36 | 1 | 133 | 258 | 28 | 149 | 3.89e-59 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868190 | AT5G13750.3 | 48.000 | 300 | 98 | 5 | 7 | 258 | 6 | 295 | 1.80e-92 | 278 |
| Msa0868190 | AT5G13750.4 | 48.000 | 300 | 98 | 5 | 7 | 258 | 6 | 295 | 1.80e-92 | 278 |
| Msa0868190 | AT5G13750.1 | 48.000 | 300 | 98 | 5 | 7 | 258 | 6 | 295 | 4.21e-92 | 280 |
| Msa0868190 | AT3G43790.5 | 48.185 | 303 | 105 | 6 | 1 | 258 | 1 | 296 | 1.35e-88 | 268 |
| Msa0868190 | AT5G13740.2 | 48.658 | 298 | 105 | 7 | 8 | 258 | 7 | 303 | 1.64e-88 | 270 |
| Msa0868190 | AT5G13740.1 | 48.658 | 298 | 105 | 7 | 8 | 258 | 7 | 303 | 6.35e-88 | 269 |
| Msa0868190 | AT3G43790.1 | 48.185 | 303 | 105 | 6 | 1 | 258 | 1 | 296 | 1.17e-87 | 268 |
| Msa0868190 | AT3G43790.4 | 48.185 | 303 | 105 | 6 | 1 | 258 | 1 | 296 | 1.17e-87 | 268 |
| Msa0868190 | AT3G43790.2 | 48.185 | 303 | 105 | 6 | 1 | 258 | 1 | 296 | 1.27e-87 | 268 |
| Msa0868190 | AT3G43790.3 | 48.185 | 303 | 105 | 6 | 1 | 258 | 1 | 296 | 1.27e-87 | 268 |
| Msa0868190 | AT5G13750.2 | 44.292 | 219 | 64 | 5 | 88 | 258 | 1 | 209 | 2.30e-52 | 175 |
Find 59 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAGCTTTGGGAGGTTATT+TGG | 0.181938 | 6_1:-1708940 | Msa0868190:CDS |
| TGGGGCATGGGTTTAATAAT+TGG | 0.228616 | 6_1:-1708963 | Msa0868190:CDS |
| GAATCCTTTGGAAATAGATT+TGG | 0.269266 | 6_1:+1708639 | None:intergenic |
| TTTAATAATTGGACCAGCTT+TGG | 0.269939 | 6_1:-1708952 | Msa0868190:CDS |
| CACAACAATAGATGACATTA+AGG | 0.296857 | 6_1:+1707889 | None:intergenic |
| CTTTCCATACCTATATTTCA+TGG | 0.306308 | 6_1:-1710337 | Msa0868190:intron |
| CGGTAGTAATTGCCTGCATC+TGG | 0.308405 | 6_1:-1708437 | Msa0868190:CDS |
| AAAATGGAAGATGGAAATAT+TGG | 0.310584 | 6_1:-1710744 | Msa0868190:CDS |
| GAAATGGAAGGCAAGAAATA+TGG | 0.321659 | 6_1:+1708480 | None:intergenic |
| TTCGAAATCTCTTGAACATA+TGG | 0.324637 | 6_1:-1710635 | Msa0868190:CDS |
| TATTTCCAAAGGATTCCTTT+TGG | 0.332250 | 6_1:-1708632 | Msa0868190:CDS |
| AATCCTTTGGAAATAGATTT+GGG | 0.340594 | 6_1:+1708640 | None:intergenic |
| GCTTTAGAAACTGGAAGAAA+TGG | 0.345551 | 6_1:-1707968 | Msa0868190:CDS |
| TTCAGTGCAGCTTGGGGCAT+GGG | 0.362285 | 6_1:-1708975 | Msa0868190:CDS |
| TTAATAATTGGACCAGCTTT+GGG | 0.379847 | 6_1:-1708951 | Msa0868190:CDS |
| ATGAAAACCTCTTCCTAAAC+TGG | 0.393957 | 6_1:-1707913 | Msa0868190:CDS |
| ATTTCAGTTCAGTGCAGCTT+GGG | 0.399921 | 6_1:-1708982 | Msa0868190:intron |
| AATTGCCTGCATCTGGCTTC+CGG | 0.400402 | 6_1:-1708430 | Msa0868190:intron |
| TTGTCCCAAAAGGAATCCTT+TGG | 0.400863 | 6_1:+1708627 | None:intergenic |
| TTAAACTTACCATGAAATAT+AGG | 0.402640 | 6_1:+1710328 | None:intergenic |
| GATGCTGAAGCTTTAGAAAC+TGG | 0.405641 | 6_1:-1707977 | Msa0868190:CDS |
| ATGACATTAAGGGCCAGTTT+AGG | 0.411844 | 6_1:+1707900 | None:intergenic |
| GTGTTGATTGGTACCTTCAT+TGG | 0.414762 | 6_1:+1709460 | None:intergenic |
| TGCAAAAGCTGATATTGAAA+TGG | 0.424887 | 6_1:+1708464 | None:intergenic |
| GGATGTTTAAATGGTTTGCT+TGG | 0.432632 | 6_1:-1709484 | Msa0868190:CDS |
| GTTCAGTGCAGCTTGGGGCA+TGG | 0.433976 | 6_1:-1708976 | Msa0868190:CDS |
| TTTGGGAGGTTATTTGGCTC+AGG | 0.435359 | 6_1:-1708934 | Msa0868190:intron |
| TAAAGCTTCAGCATCATCAA+TGG | 0.462778 | 6_1:+1707985 | None:intergenic |
| GCCAAATAACCTCCCAAAGC+TGG | 0.467939 | 6_1:+1708939 | None:intergenic |
| TATGGAAAGAGAGATGATAT+AGG | 0.473840 | 6_1:+1710351 | None:intergenic |
| GATTTCAGTTCAGTGCAGCT+TGG | 0.482930 | 6_1:-1708983 | Msa0868190:intron |
| TGGTTTGCTTGGACCAATGA+AGG | 0.487662 | 6_1:-1709473 | Msa0868190:intron |
| CTTTAGAAACTGGAAGAAAT+GGG | 0.487764 | 6_1:-1707967 | Msa0868190:CDS |
| ACTGGAAGAAATGGGAAAGC+AGG | 0.507810 | 6_1:-1707959 | Msa0868190:CDS |
| ACATTACACAACCACCCTCT+TGG | 0.508399 | 6_1:-1708016 | Msa0868190:CDS |
| AAGTGCTTATGCTGGTTATG+TGG | 0.512014 | 6_1:-1710109 | Msa0868190:CDS |
| ATTCACTTACTTGTCCCAAA+AGG | 0.515012 | 6_1:+1708617 | None:intergenic |
| ACAACAATAGATGACATTAA+GGG | 0.521167 | 6_1:+1707890 | None:intergenic |
| AACAAAGAATTCGGTGAAGA+GGG | 0.527031 | 6_1:-1710806 | Msa0868190:five_prime_UTR |
| AAGTACTATGACAATTGTCC+TGG | 0.541237 | 6_1:-1710702 | Msa0868190:CDS |
| CAATGGACTCATTGCCAAGA+GGG | 0.541868 | 6_1:+1708002 | None:intergenic |
| CTTACCATGAAATATAGGTA+TGG | 0.543067 | 6_1:+1710333 | None:intergenic |
| TTATGATATTTCTTATCAAG+AGG | 0.544878 | 6_1:-1707849 | None:intergenic |
| TTAAGGGCCAGTTTAGGAAG+AGG | 0.546629 | 6_1:+1707906 | None:intergenic |
| ACATACCGGAAGCCAGATGC+AGG | 0.551614 | 6_1:+1708425 | None:intergenic |
| AAACAAAGAATTCGGTGAAG+AGG | 0.555418 | 6_1:-1710807 | None:intergenic |
| GTAGGATCTGCATTCATGCT+TGG | 0.560726 | 6_1:-1709992 | Msa0868190:intron |
| ATACCCAAATCTATTTCCAA+AGG | 0.569665 | 6_1:-1708643 | Msa0868190:CDS |
| AAAGCTGATATTGAAATGGA+AGG | 0.572666 | 6_1:+1708468 | None:intergenic |
| AAATCTCTTGAACATATGGA+TGG | 0.593890 | 6_1:-1710631 | Msa0868190:CDS |
| GAGGACATAAGTGCTTATGC+TGG | 0.604864 | 6_1:-1710117 | Msa0868190:CDS |
| TTTCAGTTCAGTGCAGCTTG+GGG | 0.620914 | 6_1:-1708981 | Msa0868190:intron |
| TCTCTTGAACATATGGATGG+TGG | 0.621234 | 6_1:-1710628 | Msa0868190:CDS |
| GCTTTGTCAACTTTACAACC+AGG | 0.622810 | 6_1:+1710684 | None:intergenic |
| AGTGCTTATGCTGGTTATGT+GGG | 0.629937 | 6_1:-1710108 | Msa0868190:intron |
| ATAATTGGACCAGCTTTGGG+AGG | 0.649173 | 6_1:-1708948 | Msa0868190:CDS |
| TGGACTCATTGCCAAGAGGG+TGG | 0.655428 | 6_1:+1708005 | None:intergenic |
| TTTGGATGGCCGTTACAACG+CGG | 0.675301 | 6_1:-1709516 | Msa0868190:CDS |
| TCAATGGACTCATTGCCAAG+AGG | 0.702775 | 6_1:+1708001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTAACAATTTAGT+TGG | - | chr6_1:1710080-1710099 | Msa0868190:intron | 10.0% |
| !! | ATTTATAGTAATTATATTGA+TGG | + | chr6_1:1710594-1710613 | None:intergenic | 10.0% |
| !!! | TCATTTGTATATTTTGATAT+CGG | - | chr6_1:1709268-1709287 | Msa0868190:intron | 15.0% |
| !! | TTAAACTTACCATGAAATAT+AGG | + | chr6_1:1708328-1708347 | None:intergenic | 20.0% |
| !!! | TTTGTGACATTATTATTTCT+TGG | - | chr6_1:1708380-1708399 | Msa0868190:intron | 20.0% |
| !!! | TTTTAATATTGCAAAAAGAG+AGG | - | chr6_1:1708514-1708533 | Msa0868190:intron | 20.0% |
| !!! | TTTTTTCTTGGATGTTTAAA+TGG | - | chr6_1:1709160-1709179 | Msa0868190:intron | 20.0% |
| !! | GAATATAAAAGACATTATCT+AGG | + | chr6_1:1709525-1709544 | None:intergenic | 20.0% |
| !!! | AGATCTATTTTCATTACAAA+AGG | + | chr6_1:1709763-1709782 | None:intergenic | 20.0% |
| !! | AAAATAGATCTTGAGAAAAA+TGG | - | chr6_1:1709772-1709791 | Msa0868190:intron | 20.0% |
| !! | TATGTTTGAATATACAAGTA+GGG | + | chr6_1:1709903-1709922 | None:intergenic | 20.0% |
| !!! | TTTTTTGCAACACAAAACAA+TGG | + | chr6_1:1707893-1707912 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTGTTGCAAAAAA+TGG | - | chr6_1:1707893-1707912 | Msa0868190:CDS | 25.0% |
| ! | AAAATGGAAGATGGAAATAT+TGG | - | chr6_1:1707909-1707928 | Msa0868190:CDS | 25.0% |
| !!! | ATGTAAAGTTTGCTACATTT+TGG | - | chr6_1:1708440-1708459 | Msa0868190:CDS | 25.0% |
| ! | ATACTGTTCACATTAAATGT+TGG | + | chr6_1:1708476-1708495 | None:intergenic | 25.0% |
| ! | ATGAAGATAAAACACATCAA+AGG | + | chr6_1:1708600-1708619 | None:intergenic | 25.0% |
| !! | TTGATGTGTTTTATCTTCAT+AGG | - | chr6_1:1708600-1708619 | Msa0868190:intron | 25.0% |
| !! | AACATTTTCATAGTCATAGT+AGG | + | chr6_1:1708641-1708660 | None:intergenic | 25.0% |
| ! | TATGACTATGAAAATGTTGT+AGG | - | chr6_1:1708643-1708662 | Msa0868190:CDS | 25.0% |
| ! | TTAACTAAAGAGAGCAAATA+CGG | - | chr6_1:1709024-1709043 | Msa0868190:intron | 25.0% |
| !! | TTAGGTATTATTGTGTTGAT+TGG | + | chr6_1:1709208-1709227 | None:intergenic | 25.0% |
| ! | TGTTGAAGGATGAAAAATTT+AGG | + | chr6_1:1709226-1709245 | None:intergenic | 25.0% |
| ! | AGTCAATTTATATCTACTCA+AGG | + | chr6_1:1709563-1709582 | None:intergenic | 25.0% |
| ! | ATCAAGTTATGAATCCAATT+GGG | + | chr6_1:1709810-1709829 | None:intergenic | 25.0% |
| ! | CTATGTTTGAATATACAAGT+AGG | + | chr6_1:1709904-1709923 | None:intergenic | 25.0% |
| !!! | GACTTGTTACATGTTTATTT+TGG | - | chr6_1:1709923-1709942 | Msa0868190:intron | 25.0% |
| !! | AATCCTTTGGAAATAGATTT+GGG | + | chr6_1:1710016-1710035 | None:intergenic | 25.0% |
| ! | TCAAAACATAATATTGTTGC+AGG | - | chr6_1:1710147-1710166 | Msa0868190:CDS | 25.0% |
| !!! | CTATATCATTGATTTTGATG+TGG | - | chr6_1:1710328-1710347 | Msa0868190:intron | 25.0% |
| !!! | AAAGAGAATTGAGTTGATTT+TGG | + | chr6_1:1710429-1710448 | None:intergenic | 25.0% |
| ! | ACAACAATAGATGACATTAA+GGG | + | chr6_1:1710766-1710785 | None:intergenic | 25.0% |
| TTCGAAATCTCTTGAACATA+TGG | - | chr6_1:1708018-1708037 | Msa0868190:CDS | 30.0% | |
| AAATCTCTTGAACATATGGA+TGG | - | chr6_1:1708022-1708041 | Msa0868190:CDS | 30.0% | |
| TATGGAAAGAGAGATGATAT+AGG | + | chr6_1:1708305-1708324 | None:intergenic | 30.0% | |
| CTTTCCATACCTATATTTCA+TGG | - | chr6_1:1708316-1708335 | Msa0868190:intron | 30.0% | |
| CTTACCATGAAATATAGGTA+TGG | + | chr6_1:1708323-1708342 | None:intergenic | 30.0% | |
| ! | GGAAGTTTTTCTTACACAAT+AGG | - | chr6_1:1708401-1708420 | Msa0868190:intron | 30.0% |
| TAATATTGCAAAAAGAGAGG+AGG | - | chr6_1:1708517-1708536 | Msa0868190:intron | 30.0% | |
| ATCTTTGACATCAATATCGT+GGG | - | chr6_1:1708687-1708706 | Msa0868190:intron | 30.0% | |
| TGTAAGTATACATGTCATTG+AGG | - | chr6_1:1708767-1708786 | Msa0868190:intron | 30.0% | |
| TAAGCTATCATCGAAACTTA+TGG | + | chr6_1:1708904-1708923 | None:intergenic | 30.0% | |
| ! | ATCATTTTCAACACGCTATT+TGG | - | chr6_1:1709100-1709119 | Msa0868190:intron | 30.0% |
| TCAAACATGACATTAACATG+TGG | + | chr6_1:1709473-1709492 | None:intergenic | 30.0% | |
| TTTAATAATTGGACCAGCTT+TGG | - | chr6_1:1709701-1709720 | Msa0868190:intron | 30.0% | |
| TTAATAATTGGACCAGCTTT+GGG | - | chr6_1:1709702-1709721 | Msa0868190:intron | 30.0% | |
| CATCAAGTTATGAATCCAAT+TGG | + | chr6_1:1709811-1709830 | None:intergenic | 30.0% | |
| ATGTATAGTGAGAATACGAT+AGG | - | chr6_1:1709828-1709847 | Msa0868190:intron | 30.0% | |
| ACCTTTATATGTCATGATCA+AGG | - | chr6_1:1709853-1709872 | Msa0868190:intron | 30.0% | |
| TCCTTGATCATGACATATAA+AGG | + | chr6_1:1709857-1709876 | None:intergenic | 30.0% | |
| ! | AGATTTGGGTATTTTACAGT+TGG | + | chr6_1:1710002-1710021 | None:intergenic | 30.0% |
| ATACCCAAATCTATTTCCAA+AGG | - | chr6_1:1710010-1710029 | Msa0868190:intron | 30.0% | |
| ! | GAATCCTTTGGAAATAGATT+TGG | + | chr6_1:1710017-1710036 | None:intergenic | 30.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | - | chr6_1:1710021-1710040 | Msa0868190:intron | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | - | chr6_1:1710022-1710041 | Msa0868190:intron | 30.0% |
| !!! | TATGTTTTGACAATGACAGT+CGG | + | chr6_1:1710137-1710156 | None:intergenic | 30.0% |
| AAAGCTGATATTGAAATGGA+AGG | + | chr6_1:1710188-1710207 | None:intergenic | 30.0% | |
| TGCAAAAGCTGATATTGAAA+TGG | + | chr6_1:1710192-1710211 | None:intergenic | 30.0% | |
| ! | AATATCAGCTTTTGCATTTG+CGG | - | chr6_1:1710196-1710215 | Msa0868190:intron | 30.0% |
| CAACCATTTATGCTAAACTT+AGG | - | chr6_1:1710287-1710306 | Msa0868190:intron | 30.0% | |
| CTACCTAAGTTTAGCATAAA+TGG | + | chr6_1:1710293-1710312 | None:intergenic | 30.0% | |
| ATGTGGTATCAGTAAAAGTA+GGG | - | chr6_1:1710345-1710364 | Msa0868190:CDS | 30.0% | |
| TAAAAAGGGAAGTAAAAGCA+GGG | + | chr6_1:1710535-1710554 | None:intergenic | 30.0% | |
| ATAAAAAGGGAAGTAAAAGC+AGG | + | chr6_1:1710536-1710555 | None:intergenic | 30.0% | |
| ! | CTTTAGAAACTGGAAGAAAT+GGG | - | chr6_1:1710686-1710705 | Msa0868190:CDS | 30.0% |
| CACAACAATAGATGACATTA+AGG | + | chr6_1:1710767-1710786 | None:intergenic | 30.0% | |
| GTGTTGCAAAAAATGGAAGA+TGG | - | chr6_1:1707900-1707919 | Msa0868190:CDS | 35.0% | |
| AAGTACTATGACAATTGTCC+TGG | - | chr6_1:1707951-1707970 | Msa0868190:CDS | 35.0% | |
| GATCTTTGACATCAATATCG+TGG | - | chr6_1:1708686-1708705 | Msa0868190:intron | 35.0% | |
| TCTTTGACATCAATATCGTG+GGG | - | chr6_1:1708688-1708707 | Msa0868190:intron | 35.0% | |
| ! | AGAAAACCTGTGGCAATTTT+AGG | - | chr6_1:1708733-1708752 | Msa0868190:intron | 35.0% |
| ! | GAAAACCTGTGGCAATTTTA+GGG | - | chr6_1:1708734-1708753 | Msa0868190:intron | 35.0% |
| ATAATCCCTAAAATTGCCAC+AGG | + | chr6_1:1708742-1708761 | None:intergenic | 35.0% | |
| !! | GGCAATTTTAGGGATTATCT+CGG | - | chr6_1:1708744-1708763 | Msa0868190:intron | 35.0% |
| ! | CATGTCATTGAGGTTTTCTT+CGG | - | chr6_1:1708777-1708796 | Msa0868190:intron | 35.0% |
| CATCATCATCGATGATGTAA+TGG | + | chr6_1:1709054-1709073 | None:intergenic | 35.0% | |
| AAGAAAAAACCGCGTTGTAA+CGG | + | chr6_1:1709149-1709168 | None:intergenic | 35.0% | |
| !! | GGATGTTTAAATGGTTTGCT+TGG | - | chr6_1:1709169-1709188 | Msa0868190:intron | 35.0% |
| ! | TCACATCCTTTTCTGATAAC+AGG | - | chr6_1:1709301-1709320 | Msa0868190:intron | 35.0% |
| AGTAAGCCTGTTATCAGAAA+AGG | + | chr6_1:1709310-1709329 | None:intergenic | 35.0% | |
| GTTATGAATCCAATTGGGAA+TGG | + | chr6_1:1709805-1709824 | None:intergenic | 35.0% | |
| ATTCACTTACTTGTCCCAAA+AGG | + | chr6_1:1710039-1710058 | None:intergenic | 35.0% | |
| GAAATGGAAGGCAAGAAATA+TGG | + | chr6_1:1710176-1710195 | None:intergenic | 35.0% | |
| TTCCGGTATGTATATCTGAT+TGG | - | chr6_1:1710240-1710259 | Msa0868190:intron | 35.0% | |
| GTCCAATCAGATATACATAC+CGG | + | chr6_1:1710245-1710264 | None:intergenic | 35.0% | |
| GATGTGGTATCAGTAAAAGT+AGG | - | chr6_1:1710344-1710363 | Msa0868190:CDS | 35.0% | |
| TAAAGCTTCAGCATCATCAA+TGG | + | chr6_1:1710671-1710690 | None:intergenic | 35.0% | |
| !! | GCTTTAGAAACTGGAAGAAA+TGG | - | chr6_1:1710685-1710704 | Msa0868190:CDS | 35.0% |
| ! | GGAAGAGGTTTTCATCTTTT+TGG | + | chr6_1:1710735-1710754 | None:intergenic | 35.0% |
| ATGAAAACCTCTTCCTAAAC+TGG | - | chr6_1:1710740-1710759 | Msa0868190:CDS | 35.0% | |
| GCTTTGTCAACTTTACAACC+AGG | + | chr6_1:1707972-1707991 | None:intergenic | 40.0% | |
| TCTCTTGAACATATGGATGG+TGG | - | chr6_1:1708025-1708044 | Msa0868190:intron | 40.0% | |
| ! | AAGTGCTTATGCTGGTTATG+TGG | - | chr6_1:1708544-1708563 | Msa0868190:intron | 40.0% |
| ! | AGTGCTTATGCTGGTTATGT+GGG | - | chr6_1:1708545-1708564 | Msa0868190:intron | 40.0% |
| GGAATCATAGCAGATCGTTA+TGG | - | chr6_1:1708709-1708728 | Msa0868190:intron | 40.0% | |
| TCGTTATGGTAGAAAACCTG+TGG | - | chr6_1:1708723-1708742 | Msa0868190:intron | 40.0% | |
| TCTATTCACATGACACTCGT+AGG | - | chr6_1:1708817-1708836 | Msa0868190:intron | 40.0% | |
| GGACTGTTTGAGAGATCTTA+TGG | - | chr6_1:1708838-1708857 | Msa0868190:intron | 40.0% | |
| !!! | TTGGCCTTAGCACAAGTTTT+TGG | - | chr6_1:1709119-1709138 | Msa0868190:intron | 40.0% |
| CCATCCAAAAACTTGTGCTA+AGG | + | chr6_1:1709126-1709145 | None:intergenic | 40.0% | |
| !! | CCTTAGCACAAGTTTTTGGA+TGG | - | chr6_1:1709123-1709142 | Msa0868190:intron | 40.0% |
| !!! | GTTACAACGCGGTTTTTTCT+TGG | - | chr6_1:1709148-1709167 | Msa0868190:intron | 40.0% |
| !! | GTGTTGATTGGTACCTTCAT+TGG | + | chr6_1:1709196-1709215 | None:intergenic | 40.0% |
| TGATTGCTCTCTGATGTTGA+AGG | + | chr6_1:1709240-1709259 | None:intergenic | 40.0% | |
| AATCTTTGTCCGACACCTAT+AGG | - | chr6_1:1709389-1709408 | Msa0868190:intron | 40.0% | |
| ATCTTTGTCCGACACCTATA+GGG | - | chr6_1:1709390-1709409 | Msa0868190:intron | 40.0% | |
| TTGACACACGTGGTTACATT+CGG | - | chr6_1:1709415-1709434 | Msa0868190:intron | 40.0% | |
| ATTTCAGTTCAGTGCAGCTT+GGG | - | chr6_1:1709671-1709690 | Msa0868190:intron | 40.0% | |
| TGGGGCATGGGTTTAATAAT+TGG | - | chr6_1:1709690-1709709 | Msa0868190:intron | 40.0% | |
| TTGTCCCAAAAGGAATCCTT+TGG | + | chr6_1:1710029-1710048 | None:intergenic | 40.0% | |
| !! | AGTTCTCTGAGATTCCTCTT+TGG | - | chr6_1:1710388-1710407 | Msa0868190:intron | 40.0% |
| TGCTTGTATCTGAACCAAAG+AGG | + | chr6_1:1710405-1710424 | None:intergenic | 40.0% | |
| ! | TTTTCGCGTGCGCATAAAAA+GGG | + | chr6_1:1710456-1710475 | None:intergenic | 40.0% |
| ! | TTTTTCGCGTGCGCATAAAA+AGG | + | chr6_1:1710457-1710476 | None:intergenic | 40.0% |
| ! | TTTTCGCGTGCGCATAAAAA+GGG | + | chr6_1:1710456-1710475 | None:intergenic | 40.0% |
| ! | TTTTTCGCGTGCGCATAAAA+AGG | + | chr6_1:1710457-1710476 | None:intergenic | 40.0% |
| !! | GATGCTGAAGCTTTAGAAAC+TGG | - | chr6_1:1710676-1710695 | Msa0868190:CDS | 40.0% |
| ATGACATTAAGGGCCAGTTT+AGG | + | chr6_1:1710756-1710775 | None:intergenic | 40.0% | |
| GAGGACATAAGTGCTTATGC+TGG | - | chr6_1:1708536-1708555 | Msa0868190:intron | 45.0% | |
| GTAGGATCTGCATTCATGCT+TGG | - | chr6_1:1708661-1708680 | Msa0868190:intron | 45.0% | |
| !! | TGGTTTGCTTGGACCAATGA+AGG | - | chr6_1:1709180-1709199 | Msa0868190:intron | 45.0% |
| CGAGAAGAAAAGCAAGCTCT+TGG | - | chr6_1:1709344-1709363 | Msa0868190:intron | 45.0% | |
| TGTCAATGCCCTATAGGTGT+CGG | + | chr6_1:1709401-1709420 | None:intergenic | 45.0% | |
| GTTTCACCATCTCATGTCTC+AGG | - | chr6_1:1709606-1709625 | Msa0868190:intron | 45.0% | |
| GATTTCAGTTCAGTGCAGCT+TGG | - | chr6_1:1709670-1709689 | Msa0868190:intron | 45.0% | |
| TTTCAGTTCAGTGCAGCTTG+GGG | - | chr6_1:1709672-1709691 | Msa0868190:intron | 45.0% | |
| !! | ATAATTGGACCAGCTTTGGG+AGG | - | chr6_1:1709705-1709724 | Msa0868190:intron | 45.0% |
| !! | ACCAGCTTTGGGAGGTTATT+TGG | - | chr6_1:1709713-1709732 | Msa0868190:intron | 45.0% |
| ! | TTTGGGAGGTTATTTGGCTC+AGG | - | chr6_1:1709719-1709738 | Msa0868190:intron | 45.0% |
| CGGAACATCAACAATACGCT+TGG | + | chr6_1:1710111-1710130 | None:intergenic | 45.0% | |
| TTGACAATGACAGTCGGAGT+CGG | + | chr6_1:1710131-1710150 | None:intergenic | 45.0% | |
| ATGCATGTCTGCTTGACTGT+AGG | - | chr6_1:1710612-1710631 | Msa0868190:intron | 45.0% | |
| ACATTACACAACCACCCTCT+TGG | - | chr6_1:1710637-1710656 | Msa0868190:CDS | 45.0% | |
| ! | CAATGGACTCATTGCCAAGA+GGG | + | chr6_1:1710654-1710673 | None:intergenic | 45.0% |
| ! | TCAATGGACTCATTGCCAAG+AGG | + | chr6_1:1710655-1710674 | None:intergenic | 45.0% |
| ACTGGAAGAAATGGGAAAGC+AGG | - | chr6_1:1710694-1710713 | Msa0868190:CDS | 45.0% | |
| TTAAGGGCCAGTTTAGGAAG+AGG | + | chr6_1:1710750-1710769 | None:intergenic | 45.0% | |
| TTTGGATGGCCGTTACAACG+CGG | - | chr6_1:1709137-1709156 | Msa0868190:intron | 50.0% | |
| CACGTGTGTCAATGCCCTAT+AGG | + | chr6_1:1709407-1709426 | None:intergenic | 50.0% | |
| !! | CTATAGGGCATTGACACACG+TGG | - | chr6_1:1709405-1709424 | Msa0868190:intron | 50.0% |
| !! | TATCTAGGAAGCGCTAACGC+AGG | + | chr6_1:1709510-1709529 | None:intergenic | 50.0% |
| GAGAGACCTGAGACATGAGA+TGG | + | chr6_1:1709615-1709634 | None:intergenic | 50.0% | |
| GCCAAATAACCTCCCAAAGC+TGG | + | chr6_1:1709717-1709736 | None:intergenic | 50.0% | |
| GGCATGAGACCATTCCCAAT+TGG | - | chr6_1:1709793-1709812 | Msa0868190:intron | 50.0% | |
| CGGTAGTAATTGCCTGCATC+TGG | - | chr6_1:1710216-1710235 | Msa0868190:intron | 50.0% | |
| ! | AATTGCCTGCATCTGGCTTC+CGG | - | chr6_1:1710223-1710242 | Msa0868190:intron | 50.0% |
| TTCAGTGCAGCTTGGGGCAT+GGG | - | chr6_1:1709678-1709697 | Msa0868190:intron | 55.0% | |
| ACATACCGGAAGCCAGATGC+AGG | + | chr6_1:1710231-1710250 | None:intergenic | 55.0% | |
| TGGACTCATTGCCAAGAGGG+TGG | + | chr6_1:1710651-1710670 | None:intergenic | 55.0% | |
| GTTCAGTGCAGCTTGGGGCA+TGG | - | chr6_1:1709677-1709696 | Msa0868190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 1707850 | 1710825 | 1707850 | ID=Msa0868190;Name=Msa0868190 |
| chr6_1 | mRNA | 1707850 | 1710825 | 1707850 | ID=Msa0868190-mRNA-1;Parent=Msa0868190;Name=Msa0868190-mRNA-1;_AED=0.19;_eAED=0.19;_QI=62|0.75|0.77|1|0.75|0.88|9|0|258 |
| chr6_1 | exon | 1707850 | 1708041 | 1707850 | ID=Msa0868190-mRNA-1:exon:467;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1708431 | 1708506 | 1708431 | ID=Msa0868190-mRNA-1:exon:466;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1708627 | 1708676 | 1708627 | ID=Msa0868190-mRNA-1:exon:465;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1708935 | 1708997 | 1708935 | ID=Msa0868190-mRNA-1:exon:464;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1709474 | 1709576 | 1709474 | ID=Msa0868190-mRNA-1:exon:463;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1709971 | 1710010 | 1709971 | ID=Msa0868190-mRNA-1:exon:462;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1710109 | 1710169 | 1710109 | ID=Msa0868190-mRNA-1:exon:461;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1710338 | 1710378 | 1710338 | ID=Msa0868190-mRNA-1:exon:460;Parent=Msa0868190-mRNA-1 |
| chr6_1 | exon | 1710616 | 1710825 | 1710616 | ID=Msa0868190-mRNA-1:exon:459;Parent=Msa0868190-mRNA-1 |
| chr6_1 | five_prime_UTR | 1710764 | 1710825 | 1710764 | ID=Msa0868190-mRNA-1:five_prime_utr;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1710616 | 1710763 | 1710616 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1710338 | 1710378 | 1710338 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1710109 | 1710169 | 1710109 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1709971 | 1710010 | 1709971 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1709474 | 1709576 | 1709474 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1708935 | 1708997 | 1708935 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1708627 | 1708676 | 1708627 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1708431 | 1708506 | 1708431 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| chr6_1 | CDS | 1707850 | 1708041 | 1707850 | ID=Msa0868190-mRNA-1:cds;Parent=Msa0868190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
