Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868640 | XP_013451466.1 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868640 | sp|Q0JKZ0|SNL6_ORYSJ | 49.359 | 312 | 150 | 5 | 55 | 358 | 62 | 373 | 4.54e-102 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868640 | A0A072U6Q4 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104810 | Msa0868640 | 0.815525 | 8.842825e-52 | -8.615850e-47 |
| Msa0685240 | Msa0868640 | 0.804420 | 2.179115e-49 | -8.615850e-47 |
| Msa0868640 | Msa0933940 | 0.806725 | 7.156304e-50 | -8.615850e-47 |
| Msa0868640 | Msa0971060 | 0.865044 | 7.852079e-65 | -8.615850e-47 |
| Msa0868640 | Msa1266030 | 0.829945 | 3.873900e-55 | -8.615850e-47 |
| Msa0868640 | Msa1303550 | 0.805382 | 1.371658e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868640 | MtrunA17_Chr6g0450211 | 96.639 | 357 | 12 | 0 | 1 | 357 | 1 | 357 | 0.0 | 713 |
| Msa0868640 | MtrunA17_Chr5g0411071 | 31.699 | 306 | 185 | 8 | 49 | 348 | 6 | 293 | 1.36e-48 | 166 |
| Msa0868640 | MtrunA17_Chr4g0001321 | 33.557 | 298 | 183 | 6 | 51 | 344 | 13 | 299 | 3.14e-36 | 134 |
| Msa0868640 | MtrunA17_Chr2g0333781 | 33.003 | 303 | 188 | 6 | 46 | 344 | 11 | 302 | 1.03e-35 | 132 |
| Msa0868640 | MtrunA17_Chr3g0077231 | 30.100 | 299 | 179 | 11 | 54 | 337 | 5 | 288 | 7.96e-34 | 127 |
| Msa0868640 | MtrunA17_Chr5g0423551 | 31.541 | 279 | 174 | 9 | 56 | 326 | 5 | 274 | 2.88e-32 | 123 |
| Msa0868640 | MtrunA17_Chr3g0077221 | 28.986 | 276 | 171 | 9 | 54 | 318 | 9 | 270 | 2.55e-31 | 120 |
| Msa0868640 | MtrunA17_Chr4g0002661 | 31.939 | 263 | 170 | 4 | 55 | 314 | 13 | 269 | 1.69e-30 | 118 |
| Msa0868640 | MtrunA17_Chr7g0245741 | 30.000 | 260 | 162 | 7 | 51 | 300 | 4 | 253 | 3.00e-30 | 117 |
| Msa0868640 | MtrunA17_Chr2g0331211 | 29.630 | 297 | 193 | 8 | 55 | 344 | 5 | 292 | 7.77e-30 | 117 |
| Msa0868640 | MtrunA17_Chr5g0431311 | 31.159 | 276 | 177 | 7 | 54 | 322 | 4 | 273 | 1.42e-29 | 115 |
| Msa0868640 | MtrunA17_Chr4g0039321 | 29.139 | 302 | 188 | 13 | 54 | 343 | 8 | 295 | 5.67e-29 | 114 |
| Msa0868640 | MtrunA17_Chr8g0363831 | 28.676 | 272 | 176 | 7 | 54 | 318 | 8 | 268 | 2.04e-28 | 112 |
| Msa0868640 | MtrunA17_Chr4g0039311 | 27.483 | 302 | 193 | 11 | 54 | 343 | 10 | 297 | 1.94e-27 | 110 |
| Msa0868640 | MtrunA17_Chr7g0245731 | 30.337 | 267 | 152 | 9 | 51 | 300 | 54 | 303 | 5.80e-27 | 109 |
| Msa0868640 | MtrunA17_Chr1g0155431 | 29.688 | 256 | 160 | 10 | 55 | 300 | 8 | 253 | 1.85e-25 | 105 |
| Msa0868640 | MtrunA17_Chr1g0155411 | 30.078 | 256 | 159 | 9 | 55 | 300 | 8 | 253 | 3.91e-25 | 103 |
| Msa0868640 | MtrunA17_Chr8g0364051 | 27.431 | 288 | 181 | 10 | 54 | 328 | 7 | 279 | 6.79e-25 | 103 |
| Msa0868640 | MtrunA17_Chr7g0245671 | 29.434 | 265 | 160 | 11 | 51 | 300 | 4 | 256 | 4.67e-24 | 100 |
| Msa0868640 | MtrunA17_Chr7g0245641 | 29.811 | 265 | 159 | 10 | 51 | 300 | 41 | 293 | 7.88e-24 | 100 |
| Msa0868640 | MtrunA17_Chr3g0106111 | 29.961 | 257 | 164 | 7 | 55 | 304 | 5 | 252 | 1.14e-23 | 99.8 |
| Msa0868640 | MtrunA17_Chr4g0002961 | 31.179 | 263 | 172 | 4 | 55 | 314 | 13 | 269 | 2.37e-23 | 99.0 |
| Msa0868640 | MtrunA17_Chr2g0291541 | 28.889 | 270 | 170 | 9 | 54 | 312 | 9 | 267 | 4.64e-22 | 95.5 |
| Msa0868640 | MtrunA17_Chr7g0245691 | 28.788 | 264 | 164 | 10 | 51 | 300 | 4 | 257 | 1.15e-21 | 94.4 |
| Msa0868640 | MtrunA17_Chr7g0245711 | 30.244 | 205 | 115 | 6 | 109 | 300 | 26 | 215 | 2.22e-21 | 92.8 |
| Msa0868640 | MtrunA17_Chr4g0048961 | 26.429 | 280 | 172 | 8 | 42 | 300 | 1 | 267 | 1.92e-20 | 90.9 |
| Msa0868640 | MtrunA17_Chr4g0042101 | 25.952 | 289 | 182 | 9 | 56 | 321 | 25 | 304 | 1.99e-20 | 91.3 |
| Msa0868640 | MtrunA17_Chr7g0245631 | 27.857 | 280 | 172 | 10 | 51 | 315 | 4 | 268 | 5.22e-19 | 86.7 |
| Msa0868640 | MtrunA17_Chr4g0010991 | 27.338 | 278 | 178 | 9 | 52 | 316 | 5 | 271 | 3.66e-16 | 78.6 |
| Msa0868640 | MtrunA17_Chr3g0133771 | 28.796 | 191 | 115 | 7 | 55 | 245 | 4 | 173 | 7.95e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868640 | AT5G14700.1 | 53.351 | 373 | 152 | 8 | 1 | 357 | 1 | 367 | 8.63e-133 | 384 |
| Msa0868640 | AT5G14700.2 | 55.678 | 273 | 107 | 4 | 1 | 264 | 1 | 268 | 1.14e-100 | 299 |
| Msa0868640 | AT2G23910.1 | 35.179 | 307 | 178 | 8 | 56 | 354 | 11 | 304 | 2.98e-54 | 181 |
| Msa0868640 | AT2G23910.2 | 37.363 | 273 | 153 | 7 | 56 | 321 | 11 | 272 | 7.43e-54 | 179 |
| Msa0868640 | AT2G23910.3 | 37.363 | 273 | 153 | 7 | 56 | 321 | 11 | 272 | 8.72e-54 | 179 |
| Msa0868640 | AT4G30470.1 | 34.185 | 313 | 190 | 7 | 47 | 354 | 2 | 303 | 3.41e-51 | 173 |
| Msa0868640 | AT2G23910.4 | 35.926 | 270 | 155 | 7 | 90 | 354 | 14 | 270 | 1.06e-48 | 165 |
| Msa0868640 | AT4G35420.1 | 33.333 | 267 | 163 | 8 | 49 | 308 | 2 | 260 | 5.58e-38 | 139 |
| Msa0868640 | AT1G09510.1 | 35.019 | 257 | 149 | 7 | 51 | 299 | 4 | 250 | 3.90e-37 | 136 |
| Msa0868640 | AT5G19440.1 | 32.776 | 299 | 181 | 10 | 54 | 343 | 9 | 296 | 1.12e-36 | 135 |
| Msa0868640 | AT1G15950.2 | 34.853 | 307 | 172 | 11 | 51 | 347 | 10 | 298 | 5.19e-35 | 131 |
| Msa0868640 | AT1G15950.3 | 34.853 | 307 | 172 | 11 | 51 | 347 | 10 | 298 | 5.56e-35 | 131 |
| Msa0868640 | AT1G15950.1 | 34.853 | 307 | 172 | 11 | 51 | 347 | 10 | 298 | 5.56e-35 | 131 |
| Msa0868640 | AT1G51410.1 | 31.788 | 302 | 178 | 11 | 55 | 343 | 9 | 295 | 7.47e-35 | 130 |
| Msa0868640 | AT1G80820.1 | 33.866 | 313 | 184 | 11 | 50 | 353 | 3 | 301 | 4.19e-34 | 129 |
| Msa0868640 | AT1G15950.6 | 35.870 | 276 | 148 | 10 | 51 | 316 | 10 | 266 | 3.18e-33 | 125 |
| Msa0868640 | AT1G15950.5 | 35.870 | 276 | 148 | 10 | 51 | 316 | 10 | 266 | 3.22e-33 | 125 |
| Msa0868640 | AT1G15950.4 | 36.364 | 275 | 148 | 10 | 51 | 316 | 10 | 266 | 4.43e-33 | 125 |
| Msa0868640 | AT1G80820.2 | 36.059 | 269 | 152 | 9 | 54 | 316 | 7 | 261 | 9.36e-33 | 123 |
| Msa0868640 | AT2G33590.1 | 32.075 | 318 | 185 | 11 | 49 | 352 | 3 | 303 | 9.40e-33 | 124 |
| Msa0868640 | AT5G58490.1 | 31.359 | 287 | 177 | 8 | 45 | 322 | 2 | 277 | 6.73e-31 | 120 |
| Msa0868640 | AT1G68540.1 | 31.496 | 254 | 162 | 7 | 57 | 304 | 6 | 253 | 4.54e-30 | 117 |
| Msa0868640 | AT1G09500.3 | 31.395 | 258 | 158 | 7 | 51 | 299 | 4 | 251 | 7.77e-30 | 115 |
| Msa0868640 | AT1G09500.1 | 31.395 | 258 | 158 | 7 | 51 | 299 | 4 | 251 | 1.55e-29 | 116 |
| Msa0868640 | AT2G33600.1 | 30.915 | 317 | 188 | 10 | 50 | 352 | 4 | 303 | 2.60e-29 | 115 |
| Msa0868640 | AT1G09480.2 | 31.679 | 262 | 151 | 10 | 51 | 299 | 4 | 250 | 2.93e-29 | 115 |
| Msa0868640 | AT1G09480.1 | 31.679 | 262 | 151 | 10 | 51 | 299 | 51 | 297 | 5.75e-29 | 115 |
| Msa0868640 | AT1G66800.1 | 31.923 | 260 | 149 | 8 | 54 | 302 | 7 | 249 | 9.61e-29 | 114 |
| Msa0868640 | AT1G61720.1 | 31.734 | 271 | 151 | 8 | 51 | 300 | 9 | 266 | 2.43e-28 | 113 |
| Msa0868640 | AT2G02400.1 | 30.000 | 260 | 168 | 8 | 50 | 304 | 1 | 251 | 4.84e-27 | 109 |
| Msa0868640 | AT1G09490.1 | 29.008 | 262 | 158 | 9 | 51 | 299 | 4 | 250 | 1.56e-25 | 105 |
| Msa0868640 | AT5G42800.1 | 29.730 | 259 | 162 | 9 | 52 | 300 | 5 | 253 | 4.33e-24 | 102 |
| Msa0868640 | AT4G27250.1 | 27.052 | 329 | 204 | 10 | 45 | 347 | 3 | 321 | 8.72e-24 | 100 |
| Msa0868640 | AT4G27250.2 | 27.586 | 319 | 205 | 9 | 45 | 347 | 3 | 311 | 2.17e-23 | 99.8 |
| Msa0868640 | AT1G09500.2 | 31.884 | 207 | 123 | 6 | 101 | 299 | 21 | 217 | 4.90e-23 | 97.8 |
| Msa0868640 | AT1G25460.1 | 28.520 | 277 | 185 | 9 | 57 | 327 | 6 | 275 | 2.06e-21 | 94.0 |
| Msa0868640 | AT1G15950.7 | 33.971 | 209 | 122 | 6 | 146 | 347 | 1 | 200 | 1.36e-20 | 90.1 |
| Msa0868640 | AT2G45400.2 | 28.352 | 261 | 166 | 8 | 54 | 300 | 39 | 292 | 2.71e-20 | 90.9 |
| Msa0868640 | AT2G45400.1 | 28.352 | 261 | 166 | 8 | 54 | 300 | 39 | 292 | 3.25e-20 | 90.9 |
| Msa0868640 | AT1G76470.1 | 29.044 | 272 | 175 | 6 | 52 | 314 | 4 | 266 | 6.79e-19 | 86.7 |
| Msa0868640 | AT1G09490.2 | 28.436 | 211 | 124 | 8 | 101 | 299 | 24 | 219 | 2.08e-18 | 84.7 |
| Msa0868640 | AT2G45400.4 | 27.477 | 222 | 143 | 6 | 54 | 262 | 39 | 255 | 6.44e-17 | 80.1 |
| Msa0868640 | AT1G68540.2 | 33.553 | 152 | 90 | 6 | 158 | 304 | 1 | 146 | 2.96e-16 | 77.0 |
Find 89 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAGTGGTGTTTCTTATC+TGG | 0.160894 | 6_1:-2328652 | Msa0868640:CDS |
| CATCACTAGCTGCTTGTATT+TGG | 0.218694 | 6_1:-2324644 | Msa0868640:CDS |
| TGAAGAGATGAGAAATAATT+TGG | 0.235206 | 6_1:-2325975 | Msa0868640:CDS |
| TGCTTTGGTCAACCATCTTT+TGG | 0.239008 | 6_1:-2328625 | Msa0868640:CDS |
| ATAGAGAAATTTAGAGAAAT+AGG | 0.249947 | 6_1:-2326001 | Msa0868640:CDS |
| AATAAAGATATAAAGATAAT+TGG | 0.261104 | 6_1:+2323352 | None:intergenic |
| GCTAAATGATGTTGATAGTT+TGG | 0.289039 | 6_1:-2325936 | Msa0868640:CDS |
| ATTTGGCATTTCTTTGTCTT+AGG | 0.298324 | 6_1:-2323476 | Msa0868640:three_prime_UTR |
| TACTCACTAAAGCACCTAAT+TGG | 0.309558 | 6_1:+2323542 | None:intergenic |
| TGGTTTGTGTATGGTTTATA+TGG | 0.313534 | 6_1:+2328937 | None:intergenic |
| CATGAGCCATGGTTAATAAT+AGG | 0.320121 | 6_1:+2324591 | None:intergenic |
| GAGAAGCTAGCAAAGGATAT+TGG | 0.331332 | 6_1:-2323659 | Msa0868640:CDS |
| GTGCTTTAGTGAGTATTAGA+TGG | 0.336507 | 6_1:-2323534 | Msa0868640:exon |
| GAGTTTCAAACCTCTTTCTT+TGG | 0.338234 | 6_1:+2324178 | None:intergenic |
| ATGATATGTAGTTAGGAATA+TGG | 0.338439 | 6_1:+2328881 | None:intergenic |
| TTCTTATCTGGGTCTTGCTT+TGG | 0.339545 | 6_1:-2328640 | Msa0868640:CDS |
| ATGCCTTATGTCGTAAGATT+TGG | 0.353834 | 6_1:-2323493 | Msa0868640:three_prime_UTR |
| TTTGGTTATGATATGTAGTT+AGG | 0.354900 | 6_1:+2328874 | None:intergenic |
| GGGTTCCTATGACAAAATTC+AGG | 0.360299 | 6_1:+2324125 | None:intergenic |
| ATCACTCTGCATAGACAAAA+AGG | 0.372903 | 6_1:-2324559 | Msa0868640:intron |
| GTTAGGAATATGGAAAATAA+TGG | 0.373799 | 6_1:+2328891 | None:intergenic |
| ACTAGTGGTGTTTCTTATCT+GGG | 0.380794 | 6_1:-2328651 | Msa0868640:CDS |
| TCTTGTACTTGGTTTGTGTA+TGG | 0.387946 | 6_1:+2328928 | None:intergenic |
| AATATGTAGTTTGTTTAGTA+AGG | 0.393784 | 6_1:-2323393 | Msa0868640:three_prime_UTR |
| AAAATAGATGAGGTATGCTT+AGG | 0.398195 | 6_1:-2323444 | Msa0868640:three_prime_UTR |
| AAATAGATGAGGTATGCTTA+GGG | 0.398846 | 6_1:-2323443 | Msa0868640:three_prime_UTR |
| CAAAGTTGAGAACAATGGTT+TGG | 0.404423 | 6_1:+2328856 | None:intergenic |
| AGTTGAAAGGGAGTTATAGA+AGG | 0.405084 | 6_1:+2328967 | None:intergenic |
| GACTCATGTCTAGGCCAATT+AGG | 0.409683 | 6_1:-2323556 | Msa0868640:CDS |
| ACCGACCCTGCTGGTCTCTC+TGG | 0.432331 | 6_1:-2325866 | Msa0868640:CDS |
| ATGCCAAATCTTACGACATA+AGG | 0.444610 | 6_1:+2323490 | None:intergenic |
| GAAATGAAAGAAAATGCTTA+TGG | 0.447338 | 6_1:-2323728 | Msa0868640:CDS |
| AGCTCATGCATGTGTGTTCA+AGG | 0.459174 | 6_1:-2323750 | Msa0868640:CDS |
| CGGCAGCAGCCACTAGATTC+CGG | 0.459501 | 6_1:+2328769 | None:intergenic |
| TATGGTTAAGAAAGTTGAAA+GGG | 0.463115 | 6_1:+2328955 | None:intergenic |
| TCTTTAGATGATGAAGATGT+TGG | 0.471639 | 6_1:-2328693 | Msa0868640:CDS |
| GGTAAGCAATTGTTGCTGTT+GGG | 0.473684 | 6_1:+2324105 | None:intergenic |
| TGGCAGCTATGGTATGCATT+AGG | 0.477270 | 6_1:-2324236 | Msa0868640:intron |
| TATGTTTATGAAAGTTGAAA+GGG | 0.478441 | 6_1:+2328992 | None:intergenic |
| TGAGGGCTGAAAAGGCTGCT+TGG | 0.484203 | 6_1:-2324208 | Msa0868640:CDS |
| AGGTAAGCAATTGTTGCTGT+TGG | 0.485134 | 6_1:+2324104 | None:intergenic |
| AGGCAAGATGAGGGCTGAAA+AGG | 0.486804 | 6_1:-2324216 | Msa0868640:CDS |
| AGATGGAAATCATGAAATCA+TGG | 0.486897 | 6_1:-2323517 | Msa0868640:three_prime_UTR |
| AACATCTTCATCATCTAAAG+AGG | 0.488950 | 6_1:+2328695 | None:intergenic |
| TTATAATATATAGAAATCAA+TGG | 0.492063 | 6_1:-2324748 | Msa0868640:intron |
| TAGTTTGGAGAAAGCATTTG+AGG | 0.492619 | 6_1:-2325921 | Msa0868640:CDS |
| TCAGGACCTGTGATAAGTGC+TGG | 0.495879 | 6_1:+2324143 | None:intergenic |
| GTGTATCCAGAGAGACCAGC+AGG | 0.497284 | 6_1:+2325860 | None:intergenic |
| AACAGTTGATGTAAAGAAAG+TGG | 0.500773 | 6_1:-2323777 | Msa0868640:CDS |
| TTGGTTACATAGTACCTTTG+AGG | 0.509131 | 6_1:+2324084 | None:intergenic |
| TGCCTAAAGAAAAGATATGT+GGG | 0.511259 | 6_1:-2323634 | Msa0868640:CDS |
| ATGCCTAAAGAAAAGATATG+TGG | 0.515158 | 6_1:-2323635 | Msa0868640:CDS |
| TGGCTGCTGCCGGCATACAC+CGG | 0.519967 | 6_1:-2328758 | Msa0868640:CDS |
| TGTGATAAGTGCTGGACAAA+TGG | 0.525063 | 6_1:+2324151 | None:intergenic |
| CTATTATTAACCATGGCTCA+TGG | 0.530599 | 6_1:-2324590 | Msa0868640:CDS |
| TGGAGAATAGCCAAAGAAAG+AGG | 0.536882 | 6_1:-2324188 | Msa0868640:CDS |
| ATATGTTTATGAAAGTTGAA+AGG | 0.538149 | 6_1:+2328991 | None:intergenic |
| TCTGCATTTACCGACCCTGC+TGG | 0.539280 | 6_1:-2325875 | Msa0868640:CDS |
| ATATGGTTAAGAAAGTTGAA+AGG | 0.539599 | 6_1:+2328954 | None:intergenic |
| GGTTAATAATAGGAGTAGTA+AGG | 0.539956 | 6_1:+2324601 | None:intergenic |
| AGTTTGGAGAAAGCATTTGA+GGG | 0.540148 | 6_1:-2325920 | Msa0868640:CDS |
| GCAACAATTGCTTACCTCAA+AGG | 0.544142 | 6_1:-2324098 | Msa0868640:intron |
| CGAATAATTGTTGACAACCC+AGG | 0.553344 | 6_1:-2328585 | Msa0868640:intron |
| CGGAATCTAGTGGCTGCTGC+CGG | 0.566719 | 6_1:-2328768 | Msa0868640:CDS |
| ATGAACAAAGTTGAGAACAA+TGG | 0.573120 | 6_1:+2328851 | None:intergenic |
| CAGAGCTTGATATCTTTCAC+CGG | 0.583324 | 6_1:-2328788 | Msa0868640:CDS |
| AAAGCATTTGAGGGCTGTCG+TGG | 0.583556 | 6_1:-2325911 | Msa0868640:CDS |
| TGAAGCAGAGAAGCTAGCAA+AGG | 0.583651 | 6_1:-2323666 | Msa0868640:CDS |
| AGTTATGCAGACTCATGTCT+AGG | 0.584860 | 6_1:-2323565 | Msa0868640:CDS |
| TGTTTATGAAAGTTGAAAGG+GGG | 0.595218 | 6_1:+2328994 | None:intergenic |
| TCCAGAGAGACCAGCAGGGT+CGG | 0.604189 | 6_1:+2325865 | None:intergenic |
| ATTTGTCCAGCACTTATCAC+AGG | 0.608102 | 6_1:-2324149 | Msa0868640:CDS |
| TATCTTTCACCGGAATCTAG+TGG | 0.614126 | 6_1:-2328778 | Msa0868640:CDS |
| ATGTTTATGAAAGTTGAAAG+GGG | 0.618438 | 6_1:+2328993 | None:intergenic |
| AGTAACCTAAGACCAAAAGA+TGG | 0.618500 | 6_1:+2328613 | None:intergenic |
| CACCGGAGAAAAGACGATGA+AGG | 0.622226 | 6_1:-2328741 | Msa0868640:CDS |
| CAATGTAACTGAGAATGTGA+TGG | 0.623543 | 6_1:-2324712 | Msa0868640:CDS |
| GGTATGCATTAGGCAAGATG+AGG | 0.624697 | 6_1:-2324226 | Msa0868640:CDS |
| GTATGCATTAGGCAAGATGA+GGG | 0.629882 | 6_1:-2324225 | Msa0868640:CDS |
| ACTACTCCTATTATTAACCA+TGG | 0.632241 | 6_1:-2324597 | Msa0868640:CDS |
| ATTCACTACTCCATGAGCCA+TGG | 0.641184 | 6_1:+2324580 | None:intergenic |
| AGCAGGGTCGGTAAATGCAG+AGG | 0.646459 | 6_1:+2325877 | None:intergenic |
| ATGCTTAGGGGTCTATGATG+TGG | 0.662252 | 6_1:-2323430 | Msa0868640:three_prime_UTR |
| GCCTAAAGAAAAGATATGTG+GGG | 0.665039 | 6_1:-2323633 | Msa0868640:CDS |
| ACCTTGGTTTGTGTCACTAG+TGG | 0.672627 | 6_1:-2328666 | Msa0868640:CDS |
| GAGTTGATAGAAAATAGATG+AGG | 0.674106 | 6_1:-2323454 | Msa0868640:three_prime_UTR |
| AATAGATGAGGTATGCTTAG+GGG | 0.689213 | 6_1:-2323442 | Msa0868640:three_prime_UTR |
| TGTATCCAGAGAGACCAGCA+GGG | 0.693157 | 6_1:+2325861 | None:intergenic |
| ACCACTAGTGACACAAACCA+AGG | 0.694749 | 6_1:+2328665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTATTTTTTATTAA+AGG | - | chr6_1:2324726-2324745 | Msa0868640:CDS | 0.0% |
| !! | ATTTCATAAATTATTCTATT+TGG | + | chr6_1:2324694-2324713 | None:intergenic | 10.0% |
| !! | TGAATATATATAATATAAGT+CGG | + | chr6_1:2325094-2325113 | None:intergenic | 10.0% |
| !!! | TTTTAGTAATTTTCAAATAT+TGG | + | chr6_1:2326727-2326746 | None:intergenic | 10.0% |
| !! | ATTAAACACTTATTAAATTT+GGG | + | chr6_1:2327307-2327326 | None:intergenic | 10.0% |
| !! | AATTAAACACTTATTAAATT+TGG | + | chr6_1:2327308-2327327 | None:intergenic | 10.0% |
| !! | TTATAATATATAGAAATCAA+TGG | - | chr6_1:2327576-2327595 | Msa0868640:intron | 10.0% |
| !! | AATAAAGATATAAAGATAAT+TGG | + | chr6_1:2328975-2328994 | None:intergenic | 10.0% |
| !! | AATAAATAAGGATATGAATT+TGG | + | chr6_1:2323842-2323861 | None:intergenic | 15.0% |
| !!! | TTCATATCCTTATTTATTTA+AGG | - | chr6_1:2323844-2323863 | Msa0868640:intron | 15.0% |
| !! | CTATAAACCTTAAATAAATA+AGG | + | chr6_1:2323854-2323873 | None:intergenic | 15.0% |
| !! | TGAAAAATAATATGAAAACA+TGG | - | chr6_1:2324141-2324160 | Msa0868640:CDS | 15.0% |
| !! | AATAAAACAAAATTGTAAGT+TGG | - | chr6_1:2324175-2324194 | Msa0868640:CDS | 15.0% |
| !! | AAAATGTTAGTAAATTTATG+TGG | - | chr6_1:2324248-2324267 | Msa0868640:intron | 15.0% |
| !! | AAATGTTAGTAAATTTATGT+GGG | - | chr6_1:2324249-2324268 | Msa0868640:intron | 15.0% |
| !! | TAGGTATATGATAAAAATAA+AGG | - | chr6_1:2324272-2324291 | Msa0868640:intron | 15.0% |
| !! | AGGTATATGATAAAAATAAA+GGG | - | chr6_1:2324273-2324292 | Msa0868640:intron | 15.0% |
| !!! | AACTTTAGAATTAAAATTAG+TGG | - | chr6_1:2324354-2324373 | Msa0868640:intron | 15.0% |
| !!! | ATGTAACATAATTTTGAAAA+GGG | - | chr6_1:2325699-2325718 | Msa0868640:intron | 15.0% |
| !! | AATTAATAGTATATTGAGAT+AGG | - | chr6_1:2325926-2325945 | Msa0868640:CDS | 15.0% |
| !! | TGATATTATCATATAATTTG+TGG | - | chr6_1:2325952-2325971 | Msa0868640:CDS | 15.0% |
| !! | TTGTAATTAATTAATAATGC+AGG | - | chr6_1:2326296-2326315 | Msa0868640:intron | 15.0% |
| !!! | ATGAAATATTTTACGATAAT+TGG | + | chr6_1:2326974-2326993 | None:intergenic | 15.0% |
| !! | ATAACATATTAACTTTAACT+TGG | - | chr6_1:2327470-2327489 | Msa0868640:intron | 15.0% |
| !! | ATGTAAACAAAAACAAAAAT+TGG | + | chr6_1:2328288-2328307 | None:intergenic | 15.0% |
| !! | TATGTTTATGAAAGTTGAAA+GGG | + | chr6_1:2323335-2323354 | None:intergenic | 20.0% |
| !! | ATATGTTTATGAAAGTTGAA+AGG | + | chr6_1:2323336-2323355 | None:intergenic | 20.0% |
| !! | AACTTTGTTCATCAAAAAAT+GGG | - | chr6_1:2323484-2323503 | Msa0868640:three_prime_UTR | 20.0% |
| !!! | AAGAACTAGTTTTTTTTTCA+TGG | + | chr6_1:2323810-2323829 | None:intergenic | 20.0% |
| !!! | AACATATGATTTTCTTTTGA+TGG | - | chr6_1:2324098-2324117 | Msa0868640:intron | 20.0% |
| !! | TAGTTTATCTTGATGAAATA+TGG | - | chr6_1:2324222-2324241 | Msa0868640:CDS | 20.0% |
| !!! | GTTATCTTTTTGTTACATTA+TGG | - | chr6_1:2324460-2324479 | Msa0868640:intron | 20.0% |
| !! | TAAGACAGTAAAATATGATA+TGG | - | chr6_1:2324582-2324601 | Msa0868640:CDS | 20.0% |
| !! | AAGACAGTAAAATATGATAT+GGG | - | chr6_1:2324583-2324602 | Msa0868640:CDS | 20.0% |
| !!! | ACATTAAGTTTTTCTTTTTG+AGG | + | chr6_1:2325548-2325567 | None:intergenic | 20.0% |
| !!! | CTTTTCAAAATTATGTTACA+TGG | + | chr6_1:2325700-2325719 | None:intergenic | 20.0% |
| !!! | CATGTAACATAATTTTGAAA+AGG | - | chr6_1:2325698-2325717 | Msa0868640:intron | 20.0% |
| !! | AATTATAACACTATCTAATG+TGG | - | chr6_1:2325988-2326007 | Msa0868640:CDS | 20.0% |
| !! | ATTATAACACTATCTAATGT+GGG | - | chr6_1:2325989-2326008 | Msa0868640:CDS | 20.0% |
| !!! | CTTTTTACTCAATTCTATTT+TGG | + | chr6_1:2326087-2326106 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTGTATTCATTTA+TGG | - | chr6_1:2326128-2326147 | Msa0868640:intron | 20.0% |
| !! | GATATGATATATGATATAGT+TGG | - | chr6_1:2326273-2326292 | Msa0868640:intron | 20.0% |
| !! | ATAGAGAAATTTAGAGAAAT+AGG | - | chr6_1:2326323-2326342 | Msa0868640:intron | 20.0% |
| !! | AATCGAACTTGATTAAATTA+CGG | + | chr6_1:2326822-2326841 | None:intergenic | 20.0% |
| !!! | ATTGTAACATTTAAGATTAG+AGG | + | chr6_1:2326914-2326933 | None:intergenic | 20.0% |
| !! | GTAGTACTTCAAATATAATA+AGG | - | chr6_1:2327342-2327361 | Msa0868640:intron | 20.0% |
| !! | AGTTAATATGTTATCTGTAA+AGG | + | chr6_1:2327464-2327483 | None:intergenic | 20.0% |
| !!! | TCATTTAGAACATTTTATGT+AGG | - | chr6_1:2327827-2327846 | Msa0868640:intron | 20.0% |
| !! | AATCAAACCAATCTATAAAT+TGG | + | chr6_1:2327943-2327962 | None:intergenic | 20.0% |
| !!! | AAATATTGCTTTTGATGATA+TGG | - | chr6_1:2328068-2328087 | Msa0868640:intron | 20.0% |
| !!! | ACAATTTAAAATGCAAATAC+AGG | - | chr6_1:2328491-2328510 | Msa0868640:intron | 20.0% |
| !!! | AATATGTAGTTTGTTTAGTA+AGG | - | chr6_1:2328931-2328950 | Msa0868640:five_prime_UTR | 20.0% |
| ! | TATGGTTAAGAAAGTTGAAA+GGG | + | chr6_1:2323372-2323391 | None:intergenic | 25.0% |
| ! | ATATGGTTAAGAAAGTTGAA+AGG | + | chr6_1:2323373-2323392 | None:intergenic | 25.0% |
| !!! | TCAACTATTTTTCTTGTACT+TGG | + | chr6_1:2323410-2323429 | None:intergenic | 25.0% |
| ! | GTTAGGAATATGGAAAATAA+TGG | + | chr6_1:2323436-2323455 | None:intergenic | 25.0% |
| ! | ATGATATGTAGTTAGGAATA+TGG | + | chr6_1:2323446-2323465 | None:intergenic | 25.0% |
| ! | TTTGGTTATGATATGTAGTT+AGG | + | chr6_1:2323453-2323472 | None:intergenic | 25.0% |
| ! | CAACTTTGTTCATCAAAAAA+TGG | - | chr6_1:2323483-2323502 | Msa0868640:three_prime_UTR | 25.0% |
| ! | AAAAACAGTTCTATTCATGA+GGG | - | chr6_1:2324052-2324071 | Msa0868640:intron | 25.0% |
| !!! | TATGATTTTCTTTTGATGGT+AGG | - | chr6_1:2324102-2324121 | Msa0868640:CDS | 25.0% |
| ! | ATAATATGAAAACATGGAAG+AGG | - | chr6_1:2324147-2324166 | Msa0868640:CDS | 25.0% |
| !! | AAAACAAAATTGTAAGTTGG+TGG | - | chr6_1:2324178-2324197 | Msa0868640:CDS | 25.0% |
| ! | TACAAAGTTGTTGAAATTTG+TGG | + | chr6_1:2324318-2324337 | None:intergenic | 25.0% |
| ! | ACAAATTTCAACAACTTTGT+AGG | - | chr6_1:2324317-2324336 | Msa0868640:intron | 25.0% |
| ! | CAAATTTCAACAACTTTGTA+GGG | - | chr6_1:2324318-2324337 | Msa0868640:intron | 25.0% |
| ! | TACTTTATAGATTGTAGATG+TGG | - | chr6_1:2324409-2324428 | Msa0868640:intron | 25.0% |
| ! | AAATTACATTGAAGACAGAA+AGG | + | chr6_1:2324661-2324680 | None:intergenic | 25.0% |
| !! | TAAAGGTCAACTGAATATTT+TGG | - | chr6_1:2324743-2324762 | Msa0868640:intron | 25.0% |
| ! | ACAATAACCTAAACACTATA+CGG | - | chr6_1:2324775-2324794 | Msa0868640:intron | 25.0% |
| ! | ACTTGAATAATCAATATGCA+TGG | + | chr6_1:2324984-2325003 | None:intergenic | 25.0% |
| !! | CTCCAATTTTGAATAAGAAT+TGG | - | chr6_1:2325004-2325023 | Msa0868640:intron | 25.0% |
| ! | GACCAATTCTTATTCAAAAT+TGG | + | chr6_1:2325009-2325028 | None:intergenic | 25.0% |
| !!! | ATGTGAGTTTCTTATTTTTC+TGG | + | chr6_1:2325439-2325458 | None:intergenic | 25.0% |
| ! | AAAAATAAGAAACTCACATG+TGG | - | chr6_1:2325440-2325459 | Msa0868640:intron | 25.0% |
| ! | AGAAATAAAGAAATCGACAT+AGG | + | chr6_1:2325477-2325496 | None:intergenic | 25.0% |
| !!! | AAAAGTCTGAACTTTTTTGA+AGG | - | chr6_1:2325779-2325798 | Msa0868640:intron | 25.0% |
| ! | AACTTATAATGTCTCATAGT+CGG | + | chr6_1:2325827-2325846 | None:intergenic | 25.0% |
| ! | AATTGAGTAAAAAGCTAGTT+AGG | - | chr6_1:2326093-2326112 | Msa0868640:intron | 25.0% |
| !!! | CCAAATTATAGTAGTTTGTT+TGG | + | chr6_1:2326175-2326194 | None:intergenic | 25.0% |
| ! | CCAAACAAACTACTATAATT+TGG | - | chr6_1:2326172-2326191 | Msa0868640:intron | 25.0% |
| ! | TGAAGAGATGAGAAATAATT+TGG | - | chr6_1:2326349-2326368 | Msa0868640:intron | 25.0% |
| !!! | TGTTTTAAAAATCGACTATG+TGG | - | chr6_1:2326567-2326586 | Msa0868640:intron | 25.0% |
| ! | ACATTGAGTTATATAGTCTA+AGG | - | chr6_1:2326697-2326716 | Msa0868640:intron | 25.0% |
| ! | AACATTAATGTCAACTAACA+TGG | - | chr6_1:2326749-2326768 | Msa0868640:intron | 25.0% |
| !! | AGAAGATATTTTTCCTCAAA+GGG | + | chr6_1:2327098-2327117 | None:intergenic | 25.0% |
| !! | AAGAAGATATTTTTCCTCAA+AGG | + | chr6_1:2327099-2327118 | None:intergenic | 25.0% |
| ! | AATCTATTGAACATATGTAG+TGG | + | chr6_1:2327229-2327248 | None:intergenic | 25.0% |
| ! | AACACTTATTAAATTTGGGT+TGG | + | chr6_1:2327303-2327322 | None:intergenic | 25.0% |
| !!! | AACACACATCTTTTAATTGA+AGG | + | chr6_1:2327655-2327674 | None:intergenic | 25.0% |
| ! | AAATCGACCAATTTATAGAT+TGG | - | chr6_1:2327933-2327952 | Msa0868640:intron | 25.0% |
| ! | GTTGAATTAGACGAAAAATA+AGG | + | chr6_1:2327974-2327993 | None:intergenic | 25.0% |
| ! | CAAAAATTGGAACAAGAAAT+TGG | + | chr6_1:2328275-2328294 | None:intergenic | 25.0% |
| ! | TCACAAAAAATGTACTCAAA+TGG | - | chr6_1:2328515-2328534 | Msa0868640:intron | 25.0% |
| ! | GAAATGAAAGAAAATGCTTA+TGG | - | chr6_1:2328596-2328615 | Msa0868640:CDS | 25.0% |
| ! | TGGTTTGTGTATGGTTTATA+TGG | + | chr6_1:2323390-2323409 | None:intergenic | 30.0% |
| ATGAACAAAGTTGAGAACAA+TGG | + | chr6_1:2323476-2323495 | None:intergenic | 30.0% | |
| AACATCTTCATCATCTAAAG+AGG | + | chr6_1:2323632-2323651 | None:intergenic | 30.0% | |
| TCTTTAGATGATGAAGATGT+TGG | - | chr6_1:2323631-2323650 | Msa0868640:CDS | 30.0% | |
| TATCATCTGAGTTTGAATTG+CGG | - | chr6_1:2324021-2324040 | Msa0868640:intron | 30.0% | |
| GAAAAACAGTTCTATTCATG+AGG | - | chr6_1:2324051-2324070 | Msa0868640:intron | 30.0% | |
| GTTAGTAAATTTATGTGGGT+AGG | - | chr6_1:2324253-2324272 | Msa0868640:intron | 30.0% | |
| AATTAAAATTAGTGGTCCTC+AGG | - | chr6_1:2324362-2324381 | Msa0868640:intron | 30.0% | |
| AGAAGAAAAAAAATGTCCTG+AGG | + | chr6_1:2324381-2324400 | None:intergenic | 30.0% | |
| ACCAAAAAAGTGGAGAAAAA+TGG | + | chr6_1:2324859-2324878 | None:intergenic | 30.0% | |
| TACGAAAAAGACCAAAAAAG+TGG | + | chr6_1:2324869-2324888 | None:intergenic | 30.0% | |
| TTTCTACGTGTTTGATCATA+TGG | - | chr6_1:2325129-2325148 | Msa0868640:intron | 30.0% | |
| !!! | GTGAATTGTGAGCTTTTTTT+GGG | + | chr6_1:2325405-2325424 | None:intergenic | 30.0% |
| !!! | TGTGAATTGTGAGCTTTTTT+TGG | + | chr6_1:2325406-2325425 | None:intergenic | 30.0% |
| TAAAGAAATCGACATAGGTA+GGG | + | chr6_1:2325472-2325491 | None:intergenic | 30.0% | |
| ATAAAGAAATCGACATAGGT+AGG | + | chr6_1:2325473-2325492 | None:intergenic | 30.0% | |
| ! | TGATTAGTCACATACATTGA+GGG | + | chr6_1:2325620-2325639 | None:intergenic | 30.0% |
| ! | TTGATTAGTCACATACATTG+AGG | + | chr6_1:2325621-2325640 | None:intergenic | 30.0% |
| ! | TATAATGCTACTTAAGCAAG+TGG | + | chr6_1:2325644-2325663 | None:intergenic | 30.0% |
| GTAGCATTATATTGAGTTTG+TGG | - | chr6_1:2325653-2325672 | Msa0868640:intron | 30.0% | |
| !! | GCTAAATGATGTTGATAGTT+TGG | - | chr6_1:2326388-2326407 | Msa0868640:intron | 30.0% |
| TAGTCAGATTACTAGTTCAT+TGG | - | chr6_1:2326617-2326636 | Msa0868640:intron | 30.0% | |
| AGTCACATGATTTAGTCATT+GGG | + | chr6_1:2326661-2326680 | None:intergenic | 30.0% | |
| AATGACTAAATCATGTGACT+CGG | - | chr6_1:2326661-2326680 | Msa0868640:intron | 30.0% | |
| TTGAGTTATATAGTCTAAGG+TGG | - | chr6_1:2326700-2326719 | Msa0868640:intron | 30.0% | |
| ! | TCTTTGAAAGTAGAAGTTTG+TGG | + | chr6_1:2326945-2326964 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTGTTAGTCCAT+AGG | - | chr6_1:2326995-2327014 | Msa0868640:intron | 30.0% |
| ! | AAAGTGCCATTCATATTATG+TGG | + | chr6_1:2327145-2327164 | None:intergenic | 30.0% |
| !! | ATGAATGGCACTTTTTGTAT+TGG | - | chr6_1:2327151-2327170 | Msa0868640:intron | 30.0% |
| !! | TGAATGGCACTTTTTGTATT+GGG | - | chr6_1:2327152-2327171 | Msa0868640:intron | 30.0% |
| AATTTGATGTAGTGAGAAAG+TGG | - | chr6_1:2327182-2327201 | Msa0868640:intron | 30.0% | |
| ! | TAATTGATTCCTACATCATG+TGG | - | chr6_1:2327387-2327406 | Msa0868640:intron | 30.0% |
| ! | GTCAAAAGTTTAAAGTTGCA+AGG | + | chr6_1:2327433-2327452 | None:intergenic | 30.0% |
| CATAGTAACACTTTCTAATG+TGG | + | chr6_1:2327516-2327535 | None:intergenic | 30.0% | |
| GGTTAATAATAGGAGTAGTA+AGG | + | chr6_1:2327726-2327745 | None:intergenic | 30.0% | |
| ACTACTCCTATTATTAACCA+TGG | - | chr6_1:2327727-2327746 | Msa0868640:intron | 30.0% | |
| !! | TATTTTAAACTAGACCGAAC+CGG | - | chr6_1:2327888-2327907 | Msa0868640:intron | 30.0% |
| TGGTTCAATCAGTTTAACTA+TGG | + | chr6_1:2327996-2328015 | None:intergenic | 30.0% | |
| AAGAAATTGGACAATGACTT+TGG | + | chr6_1:2328262-2328281 | None:intergenic | 30.0% | |
| CTCTAGATGAAAGTTTACAT+TGG | - | chr6_1:2328448-2328467 | Msa0868640:intron | 30.0% | |
| ! | AACAGTTGATGTAAAGAAAG+TGG | - | chr6_1:2328547-2328566 | Msa0868640:intron | 30.0% |
| ATGCCTAAAGAAAAGATATG+TGG | - | chr6_1:2328689-2328708 | Msa0868640:CDS | 30.0% | |
| TGCCTAAAGAAAAGATATGT+GGG | - | chr6_1:2328690-2328709 | Msa0868640:CDS | 30.0% | |
| AGATGGAAATCATGAAATCA+TGG | - | chr6_1:2328807-2328826 | Msa0868640:CDS | 30.0% | |
| ATTTGGCATTTCTTTGTCTT+AGG | - | chr6_1:2328848-2328867 | Msa0868640:five_prime_UTR | 30.0% | |
| !! | GAGTTGATAGAAAATAGATG+AGG | - | chr6_1:2328870-2328889 | Msa0868640:five_prime_UTR | 30.0% |
| AAAATAGATGAGGTATGCTT+AGG | - | chr6_1:2328880-2328899 | Msa0868640:five_prime_UTR | 30.0% | |
| AAATAGATGAGGTATGCTTA+GGG | - | chr6_1:2328881-2328900 | Msa0868640:five_prime_UTR | 30.0% | |
| AGTTGAAAGGGAGTTATAGA+AGG | + | chr6_1:2323360-2323379 | None:intergenic | 35.0% | |
| !! | TCTTGTACTTGGTTTGTGTA+TGG | + | chr6_1:2323399-2323418 | None:intergenic | 35.0% |
| CAAAGTTGAGAACAATGGTT+TGG | + | chr6_1:2323471-2323490 | None:intergenic | 35.0% | |
| TGAAGATGTTGGAAAAACCT+TGG | - | chr6_1:2323642-2323661 | Msa0868640:CDS | 35.0% | |
| ACTAGTGGTGTTTCTTATCT+GGG | - | chr6_1:2323673-2323692 | Msa0868640:CDS | 35.0% | |
| AGTAACCTAAGACCAAAAGA+TGG | + | chr6_1:2323714-2323733 | None:intergenic | 35.0% | |
| TAAGAAAGAGAAACCAACCT+GGG | + | chr6_1:2323759-2323778 | None:intergenic | 35.0% | |
| TTAAGAAAGAGAAACCAACC+TGG | + | chr6_1:2323760-2323779 | None:intergenic | 35.0% | |
| CAAAGAAAAACACGTGAACT+AGG | + | chr6_1:2323894-2323913 | None:intergenic | 35.0% | |
| !! | TGTGAAGAAGAAAGTATTGC+AGG | - | chr6_1:2323965-2323984 | Msa0868640:intron | 35.0% |
| !! | AATTGTAAGTTGGTGGCAAT+TGG | - | chr6_1:2324185-2324204 | Msa0868640:CDS | 35.0% |
| TGTTACATTATGGCAGAGTT+TGG | - | chr6_1:2324470-2324489 | Msa0868640:intron | 35.0% | |
| AACATGTGACTATGTGAGTA+TGG | - | chr6_1:2324815-2324834 | Msa0868640:intron | 35.0% | |
| !!! | GCCATTTTTCTCCACTTTTT+TGG | - | chr6_1:2324855-2324874 | Msa0868640:intron | 35.0% |
| TTGCTACGAGAAACTATGAT+CGG | - | chr6_1:2325224-2325243 | Msa0868640:intron | 35.0% | |
| AAGCTCACAATTCACATATG+TGG | - | chr6_1:2325410-2325429 | Msa0868640:intron | 35.0% | |
| !! | GTTGAGATTAGTCTCATAGT+CGG | - | chr6_1:2325753-2325772 | Msa0868640:intron | 35.0% |
| !! | TAGTTTGGAGAAAGCATTTG+AGG | - | chr6_1:2326403-2326422 | Msa0868640:intron | 35.0% |
| !! | AGTTTGGAGAAAGCATTTGA+GGG | - | chr6_1:2326404-2326423 | Msa0868640:intron | 35.0% |
| GAGTCACATGATTTAGTCAT+TGG | + | chr6_1:2326662-2326681 | None:intergenic | 35.0% | |
| GTCTCAGTCGTAAAATTGAA+AGG | + | chr6_1:2326800-2326819 | None:intergenic | 35.0% | |
| TAGCTGACCACTTATAAAGA+TGG | - | chr6_1:2327019-2327038 | Msa0868640:intron | 35.0% | |
| ACCCTACCACATAATATGAA+TGG | - | chr6_1:2327136-2327155 | Msa0868640:intron | 35.0% | |
| GCCATTCATATTATGTGGTA+GGG | + | chr6_1:2327140-2327159 | None:intergenic | 35.0% | |
| TGCCATTCATATTATGTGGT+AGG | + | chr6_1:2327141-2327160 | None:intergenic | 35.0% | |
| !! | GGTTATAGTCTTGTAGACTT+TGG | - | chr6_1:2327203-2327222 | Msa0868640:intron | 35.0% |
| !!! | GCTTTTTTTCCACATGATGT+AGG | + | chr6_1:2327399-2327418 | None:intergenic | 35.0% |
| CAATGTAACTGAGAATGTGA+TGG | - | chr6_1:2327612-2327631 | Msa0868640:intron | 35.0% | |
| CATGAGCCATGGTTAATAAT+AGG | + | chr6_1:2327736-2327755 | None:intergenic | 35.0% | |
| CTATTATTAACCATGGCTCA+TGG | - | chr6_1:2327734-2327753 | Msa0868640:intron | 35.0% | |
| ATCACTCTGCATAGACAAAA+AGG | - | chr6_1:2327765-2327784 | Msa0868640:intron | 35.0% | |
| CCTTCAAATCACGCTTTAAT+TGG | + | chr6_1:2328016-2328035 | None:intergenic | 35.0% | |
| CCAATTAAAGCGTGATTTGA+AGG | - | chr6_1:2328013-2328032 | Msa0868640:intron | 35.0% | |
| ATTTGAAGGTCTCACCAATT+CGG | - | chr6_1:2328027-2328046 | Msa0868640:intron | 35.0% | |
| !! | TTTTGATGATATGGCAGCTA+TGG | - | chr6_1:2328077-2328096 | Msa0868640:intron | 35.0% |
| GAGTTTCAAACCTCTTTCTT+TGG | + | chr6_1:2328149-2328168 | None:intergenic | 35.0% | |
| TTGGTTACATAGTACCTTTG+AGG | + | chr6_1:2328243-2328262 | None:intergenic | 35.0% | |
| GCCTAAAGAAAAGATATGTG+GGG | - | chr6_1:2328691-2328710 | Msa0868640:CDS | 35.0% | |
| ! | TCCCCACATATCTTTTCTTT+AGG | + | chr6_1:2328695-2328714 | None:intergenic | 35.0% |
| ! | TACTCACTAAAGCACCTAAT+TGG | + | chr6_1:2328785-2328804 | None:intergenic | 35.0% |
| GTGCTTTAGTGAGTATTAGA+TGG | - | chr6_1:2328790-2328809 | Msa0868640:CDS | 35.0% | |
| ATGCCTTATGTCGTAAGATT+TGG | - | chr6_1:2328831-2328850 | Msa0868640:exon | 35.0% | |
| ATGCCAAATCTTACGACATA+AGG | + | chr6_1:2328837-2328856 | None:intergenic | 35.0% | |
| AATAGATGAGGTATGCTTAG+GGG | - | chr6_1:2328882-2328901 | Msa0868640:five_prime_UTR | 35.0% | |
| CAGAGCTTGATATCTTTCAC+CGG | - | chr6_1:2323536-2323555 | Msa0868640:exon | 40.0% | |
| TATCTTTCACCGGAATCTAG+TGG | - | chr6_1:2323546-2323565 | Msa0868640:CDS | 40.0% | |
| ! | ATCCTTCATCGTCTTTTCTC+CGG | + | chr6_1:2323588-2323607 | None:intergenic | 40.0% |
| CACTAGTGGTGTTTCTTATC+TGG | - | chr6_1:2323672-2323691 | Msa0868640:CDS | 40.0% | |
| TTCTTATCTGGGTCTTGCTT+TGG | - | chr6_1:2323684-2323703 | Msa0868640:CDS | 40.0% | |
| ! | TGCTTTGGTCAACCATCTTT+TGG | - | chr6_1:2323699-2323718 | Msa0868640:CDS | 40.0% |
| !! | GTCAACCATCTTTTGGTCTT+AGG | - | chr6_1:2323706-2323725 | Msa0868640:CDS | 40.0% |
| CGAATAATTGTTGACAACCC+AGG | - | chr6_1:2323739-2323758 | Msa0868640:CDS | 40.0% | |
| TAATTGTTGACAACCCAGGT+TGG | - | chr6_1:2323743-2323762 | Msa0868640:CDS | 40.0% | |
| TGACTATGTGAGTATGGTGT+AGG | - | chr6_1:2324821-2324840 | Msa0868640:intron | 40.0% | |
| GACTATGTGAGTATGGTGTA+GGG | - | chr6_1:2324822-2324841 | Msa0868640:intron | 40.0% | |
| TTCTCGTAGCAACACTCTTT+GGG | + | chr6_1:2325216-2325235 | None:intergenic | 40.0% | |
| TTTCTCGTAGCAACACTCTT+TGG | + | chr6_1:2325217-2325236 | None:intergenic | 40.0% | |
| !! | ACATACATTGAGGGCATCTA+GGG | + | chr6_1:2325611-2325630 | None:intergenic | 40.0% |
| TTATCTTCCCCTTTACAAGC+TGG | + | chr6_1:2325899-2325918 | None:intergenic | 40.0% | |
| ATAAGTGGTCAGCTATCCTA+TGG | + | chr6_1:2327014-2327033 | None:intergenic | 40.0% | |
| CACTTATAAAGATGGTCCAC+CGG | - | chr6_1:2327027-2327046 | Msa0868640:intron | 40.0% | |
| AGAGTGTACACATTGCCAAA+AGG | + | chr6_1:2327053-2327072 | None:intergenic | 40.0% | |
| ! | TTTTTCCTCAAAGGGACTTC+AGG | + | chr6_1:2327090-2327109 | None:intergenic | 40.0% |
| CATCACTAGCTGCTTGTATT+TGG | - | chr6_1:2327680-2327699 | Msa0868640:intron | 40.0% | |
| AATCAGATCCACTACCGAAT+TGG | + | chr6_1:2328044-2328063 | None:intergenic | 40.0% | |
| GTATGCATTAGGCAAGATGA+GGG | - | chr6_1:2328099-2328118 | Msa0868640:intron | 40.0% | |
| TGGAGAATAGCCAAAGAAAG+AGG | - | chr6_1:2328136-2328155 | Msa0868640:intron | 40.0% | |
| !! | TGTGATAAGTGCTGGACAAA+TGG | + | chr6_1:2328176-2328195 | None:intergenic | 40.0% |
| ATTTGTCCAGCACTTATCAC+AGG | - | chr6_1:2328175-2328194 | Msa0868640:intron | 40.0% | |
| ! | CAGGTCCTGAATTTTGTCAT+AGG | - | chr6_1:2328194-2328213 | Msa0868640:intron | 40.0% |
| GGGTTCCTATGACAAAATTC+AGG | + | chr6_1:2328202-2328221 | None:intergenic | 40.0% | |
| ! | GGTAAGCAATTGTTGCTGTT+GGG | + | chr6_1:2328222-2328241 | None:intergenic | 40.0% |
| AGGTAAGCAATTGTTGCTGT+TGG | + | chr6_1:2328223-2328242 | None:intergenic | 40.0% | |
| GCAACAATTGCTTACCTCAA+AGG | - | chr6_1:2328226-2328245 | Msa0868640:intron | 40.0% | |
| GAGAAGCTAGCAAAGGATAT+TGG | - | chr6_1:2328665-2328684 | Msa0868640:CDS | 40.0% | |
| AGTTATGCAGACTCATGTCT+AGG | - | chr6_1:2328759-2328778 | Msa0868640:CDS | 40.0% | |
| !! | ACCTTGGTTTGTGTCACTAG+TGG | - | chr6_1:2323658-2323677 | Msa0868640:CDS | 45.0% |
| ACCACTAGTGACACAAACCA+AGG | + | chr6_1:2323662-2323681 | None:intergenic | 45.0% | |
| CGTTGTGCCGTATAGTGTTT+AGG | + | chr6_1:2324785-2324804 | None:intergenic | 45.0% | |
| !! | TTGAGGGCATCTAGGGTTTA+GGG | + | chr6_1:2325604-2325623 | None:intergenic | 45.0% |
| !! | ATTGAGGGCATCTAGGGTTT+AGG | + | chr6_1:2325605-2325624 | None:intergenic | 45.0% |
| !! | CACATACATTGAGGGCATCT+AGG | + | chr6_1:2325612-2325631 | None:intergenic | 45.0% |
| CCTAGTACCTCTATCTGAGT+CGG | + | chr6_1:2326593-2326612 | None:intergenic | 45.0% | |
| AGTCATTGGGCTCAATAACG+TGG | + | chr6_1:2326648-2326667 | None:intergenic | 45.0% | |
| CGGTGGACCATCTTTATAAG+TGG | + | chr6_1:2327029-2327048 | None:intergenic | 45.0% | |
| TGTACACATTGCCAAAAGGC+CGG | + | chr6_1:2327049-2327068 | None:intergenic | 45.0% | |
| !! | AAAGGGACTTCAGGTTGGTA+GGG | + | chr6_1:2327081-2327100 | None:intergenic | 45.0% |
| ATTCACTACTCCATGAGCCA+TGG | + | chr6_1:2327747-2327766 | None:intergenic | 45.0% | |
| TTAAACTAGACCGAACCGGT+CGG | - | chr6_1:2327892-2327911 | Msa0868640:intron | 45.0% | |
| TGGCAGCTATGGTATGCATT+AGG | - | chr6_1:2328088-2328107 | Msa0868640:intron | 45.0% | |
| GGTATGCATTAGGCAAGATG+AGG | - | chr6_1:2328098-2328117 | Msa0868640:intron | 45.0% | |
| AGCTCATGCATGTGTGTTCA+AGG | - | chr6_1:2328574-2328593 | Msa0868640:intron | 45.0% | |
| TGAAGCAGAGAAGCTAGCAA+AGG | - | chr6_1:2328658-2328677 | Msa0868640:CDS | 45.0% | |
| GACTCATGTCTAGGCCAATT+AGG | - | chr6_1:2328768-2328787 | Msa0868640:CDS | 45.0% | |
| ATGCTTAGGGGTCTATGATG+TGG | - | chr6_1:2328894-2328913 | Msa0868640:five_prime_UTR | 45.0% | |
| !!! | AAATATTGATTAAATTATTA+AGG | + | chr6_1:2327873-2327892 | None:intergenic | 5.0% |
| ! | GTCTTTTCTCCGGTGTATGC+CGG | + | chr6_1:2323578-2323597 | None:intergenic | 50.0% |
| CACCGGAGAAAAGACGATGA+AGG | - | chr6_1:2323583-2323602 | Msa0868640:CDS | 50.0% | |
| TATGGTGTAGGGCACACGTA+GGG | - | chr6_1:2324833-2324852 | Msa0868640:intron | 50.0% | |
| !! | TGAGGGCATCTAGGGTTTAG+GGG | + | chr6_1:2325603-2325622 | None:intergenic | 50.0% |
| TGCATGCTGCCAGCTTGTAA+AGG | - | chr6_1:2325887-2325906 | Msa0868640:CDS | 50.0% | |
| GCATGCTGCCAGCTTGTAAA+GGG | - | chr6_1:2325888-2325907 | Msa0868640:CDS | 50.0% | |
| CATGCTGCCAGCTTGTAAAG+GGG | - | chr6_1:2325889-2325908 | Msa0868640:CDS | 50.0% | |
| ! | AAAGCATTTGAGGGCTGTCG+TGG | - | chr6_1:2326413-2326432 | Msa0868640:intron | 50.0% |
| TGTATCCAGAGAGACCAGCA+GGG | + | chr6_1:2326466-2326485 | None:intergenic | 50.0% | |
| ! | TATGTGGCCGACTCAGATAG+AGG | - | chr6_1:2326583-2326602 | Msa0868640:intron | 50.0% |
| !! | CCGACTCAGATAGAGGTACT+AGG | - | chr6_1:2326590-2326609 | Msa0868640:intron | 50.0% |
| !! | CAAAGGGACTTCAGGTTGGT+AGG | + | chr6_1:2327082-2327101 | None:intergenic | 50.0% |
| ACCAACCTGAAGTCCCTTTG+AGG | - | chr6_1:2327082-2327101 | Msa0868640:intron | 50.0% | |
| TCCTCAAAGGGACTTCAGGT+TGG | + | chr6_1:2327086-2327105 | None:intergenic | 50.0% | |
| ACTCAACCAGTTGAACCGAC+CGG | + | chr6_1:2327910-2327929 | None:intergenic | 50.0% | |
| ! | GTCGGTTCAACTGGTTGAGT+TGG | - | chr6_1:2327910-2327929 | Msa0868640:intron | 50.0% |
| AGGTCTCACCAATTCGGTAG+TGG | - | chr6_1:2328033-2328052 | Msa0868640:intron | 50.0% | |
| AGGCAAGATGAGGGCTGAAA+AGG | - | chr6_1:2328108-2328127 | Msa0868640:intron | 50.0% | |
| TCAGGACCTGTGATAAGTGC+TGG | + | chr6_1:2328184-2328203 | None:intergenic | 50.0% | |
| GTATGGTGTAGGGCACACGT+AGG | - | chr6_1:2324832-2324851 | Msa0868640:intron | 55.0% | |
| AGCAGGGTCGGTAAATGCAG+AGG | + | chr6_1:2326450-2326469 | None:intergenic | 55.0% | |
| TCTGCATTTACCGACCCTGC+TGG | - | chr6_1:2326449-2326468 | Msa0868640:intron | 55.0% | |
| GTGTATCCAGAGAGACCAGC+AGG | + | chr6_1:2326467-2326486 | None:intergenic | 55.0% | |
| ! | AAGATGGTCCACCGGCCTTT+TGG | - | chr6_1:2327035-2327054 | Msa0868640:intron | 55.0% |
| ACACATTGCCAAAAGGCCGG+TGG | + | chr6_1:2327046-2327065 | None:intergenic | 55.0% | |
| ACCAGTTGAACCGACCGGTT+CGG | + | chr6_1:2327905-2327924 | None:intergenic | 55.0% | |
| TGAGGGCTGAAAAGGCTGCT+TGG | - | chr6_1:2328116-2328135 | Msa0868640:intron | 55.0% | |
| CGGCAGCAGCCACTAGATTC+CGG | + | chr6_1:2323558-2323577 | None:intergenic | 60.0% | |
| CGGAATCTAGTGGCTGCTGC+CGG | - | chr6_1:2323556-2323575 | Msa0868640:CDS | 60.0% | |
| TCCAGAGAGACCAGCAGGGT+CGG | + | chr6_1:2326462-2326481 | None:intergenic | 60.0% | |
| ! | ACCGAACCGGTCGGTTCAAC+TGG | - | chr6_1:2327901-2327920 | Msa0868640:intron | 60.0% |
| TGGCTGCTGCCGGCATACAC+CGG | - | chr6_1:2323566-2323585 | Msa0868640:CDS | 65.0% | |
| ! | ACCGACCCTGCTGGTCTCTC+TGG | - | chr6_1:2326458-2326477 | Msa0868640:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 2323332 | 2329014 | 2323332 | ID=Msa0868640;Name=Msa0868640 |
| chr6_1 | mRNA | 2323332 | 2329014 | 2323332 | ID=Msa0868640-mRNA-1;Parent=Msa0868640;Name=Msa0868640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|1|1|1|1|1|5|206|358 |
| chr6_1 | exon | 2323332 | 2323833 | 2323332 | ID=Msa0868640-mRNA-1:exon:689;Parent=Msa0868640-mRNA-1 |
| chr6_1 | exon | 2324099 | 2324252 | 2324099 | ID=Msa0868640-mRNA-1:exon:688;Parent=Msa0868640-mRNA-1 |
| chr6_1 | exon | 2324560 | 2324757 | 2324560 | ID=Msa0868640-mRNA-1:exon:687;Parent=Msa0868640-mRNA-1 |
| chr6_1 | exon | 2325859 | 2326028 | 2325859 | ID=Msa0868640-mRNA-1:exon:686;Parent=Msa0868640-mRNA-1 |
| chr6_1 | exon | 2328586 | 2329014 | 2328586 | ID=Msa0868640-mRNA-1:exon:685;Parent=Msa0868640-mRNA-1 |
| chr6_1 | five_prime_UTR | 2328845 | 2329014 | 2328845 | ID=Msa0868640-mRNA-1:five_prime_utr;Parent=Msa0868640-mRNA-1 |
| chr6_1 | CDS | 2328586 | 2328844 | 2328586 | ID=Msa0868640-mRNA-1:cds;Parent=Msa0868640-mRNA-1 |
| chr6_1 | CDS | 2325859 | 2326028 | 2325859 | ID=Msa0868640-mRNA-1:cds;Parent=Msa0868640-mRNA-1 |
| chr6_1 | CDS | 2324560 | 2324757 | 2324560 | ID=Msa0868640-mRNA-1:cds;Parent=Msa0868640-mRNA-1 |
| chr6_1 | CDS | 2324099 | 2324252 | 2324099 | ID=Msa0868640-mRNA-1:cds;Parent=Msa0868640-mRNA-1 |
| chr6_1 | CDS | 2323538 | 2323833 | 2323538 | ID=Msa0868640-mRNA-1:cds;Parent=Msa0868640-mRNA-1 |
| chr6_1 | three_prime_UTR | 2323332 | 2323537 | 2323332 | ID=Msa0868640-mRNA-1:three_prime_utr;Parent=Msa0868640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
